Query 029675
Match_columns 189
No_of_seqs 129 out of 1823
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 16:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 1.2E-38 2.7E-43 223.5 20.5 180 1-180 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 2.7E-38 5.9E-43 222.0 20.6 181 1-181 1-181 (182)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 3E-38 6.6E-43 214.2 12.5 167 15-185 7-179 (205)
4 smart00177 ARF ARF-like small 100.0 4.2E-36 9.1E-41 209.8 19.8 169 10-178 6-174 (175)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.9E-37 1.3E-41 207.4 12.9 167 12-181 17-188 (221)
6 cd04149 Arf6 Arf6 subfamily. 100.0 4.1E-36 8.9E-41 208.4 17.2 162 14-175 6-167 (168)
7 KOG0092 GTPase Rab5/YPT51 and 100.0 6.7E-37 1.4E-41 206.9 12.7 165 15-183 3-172 (200)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4E-35 8.6E-40 201.9 18.1 158 18-175 1-158 (159)
9 KOG0070 GTP-binding ADP-ribosy 100.0 2.8E-35 6E-40 198.5 15.9 180 1-180 1-180 (181)
10 PF00025 Arf: ADP-ribosylation 100.0 2.9E-34 6.3E-39 200.2 20.8 173 5-177 1-175 (175)
11 cd04158 ARD1 ARD1 subfamily. 100.0 7.4E-34 1.6E-38 197.4 19.5 163 19-181 1-164 (169)
12 KOG0078 GTP-binding protein SE 100.0 3.8E-35 8.2E-40 201.8 12.3 166 14-183 9-179 (207)
13 cd04154 Arl2 Arl2 subfamily. 100.0 8.1E-34 1.8E-38 198.0 18.8 166 10-175 7-172 (173)
14 KOG0080 GTPase Rab18, small G 100.0 2.4E-35 5.1E-40 193.6 10.0 163 16-181 10-177 (209)
15 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.3E-33 2.8E-38 197.1 19.5 170 6-175 4-173 (174)
16 cd04120 Rab12 Rab12 subfamily. 100.0 2.7E-34 5.8E-39 204.1 15.8 160 18-181 1-166 (202)
17 KOG0073 GTP-binding ADP-ribosy 100.0 2.6E-33 5.7E-38 184.5 17.3 181 1-182 1-182 (185)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.3E-34 5.1E-39 200.4 13.2 165 16-183 1-169 (172)
19 KOG0098 GTPase Rab2, small G p 100.0 6.9E-35 1.5E-39 195.9 9.9 164 15-182 4-172 (216)
20 cd04126 Rab20 Rab20 subfamily. 100.0 8.5E-34 1.8E-38 203.6 15.1 163 18-181 1-193 (220)
21 cd04121 Rab40 Rab40 subfamily. 100.0 7.5E-34 1.6E-38 200.0 14.5 160 16-182 5-171 (189)
22 smart00178 SAR Sar1p-like memb 100.0 7E-33 1.5E-37 194.9 19.4 173 4-176 3-183 (184)
23 cd01875 RhoG RhoG subfamily. 100.0 4.8E-34 1E-38 202.0 12.6 164 16-181 2-180 (191)
24 cd04151 Arl1 Arl1 subfamily. 100.0 7.7E-33 1.7E-37 190.3 17.8 157 19-175 1-157 (158)
25 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.2E-34 1.3E-38 199.5 12.1 163 15-179 3-181 (182)
26 cd04133 Rop_like Rop subfamily 100.0 1.3E-33 2.8E-38 196.8 12.8 159 18-178 2-173 (176)
27 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.8E-34 1.3E-38 195.3 10.8 163 15-181 12-179 (222)
28 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.4E-33 7.5E-38 195.0 13.6 159 18-177 2-174 (175)
29 PTZ00369 Ras-like protein; Pro 100.0 3.6E-33 7.7E-38 197.3 13.7 164 15-183 3-172 (189)
30 KOG0071 GTP-binding ADP-ribosy 100.0 3E-32 6.6E-37 175.1 16.6 178 1-178 1-178 (180)
31 cd04131 Rnd Rnd subfamily. Th 100.0 2E-33 4.3E-38 196.5 12.0 160 17-178 1-176 (178)
32 cd04157 Arl6 Arl6 subfamily. 100.0 3.3E-32 7.1E-37 187.7 17.5 157 19-175 1-161 (162)
33 cd04122 Rab14 Rab14 subfamily. 100.0 7.5E-33 1.6E-37 191.8 14.1 157 17-179 2-165 (166)
34 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5E-32 1.1E-36 190.5 18.4 168 16-183 2-175 (183)
35 cd04127 Rab27A Rab27a subfamil 100.0 5.6E-33 1.2E-37 194.8 13.5 160 16-180 3-179 (180)
36 cd00879 Sar1 Sar1 subfamily. 100.0 8.5E-32 1.8E-36 190.4 19.4 164 14-177 16-190 (190)
37 KOG0093 GTPase Rab3, small G p 100.0 2.1E-33 4.5E-38 181.9 9.9 163 16-182 20-187 (193)
38 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.2E-32 9.1E-37 187.7 17.0 155 19-175 1-163 (164)
39 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.7E-33 1.2E-37 200.4 13.0 163 16-180 12-190 (232)
40 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.7E-32 1.2E-36 187.5 17.5 157 19-175 1-166 (167)
41 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.1E-32 8.9E-37 193.6 17.2 164 18-185 1-175 (201)
42 KOG0086 GTPase Rab4, small G p 100.0 5.9E-33 1.3E-37 181.0 11.5 165 16-184 8-177 (214)
43 KOG0394 Ras-related GTPase [Ge 100.0 2.8E-33 6.2E-38 187.8 10.0 162 14-182 6-182 (210)
44 cd04136 Rap_like Rap-like subf 100.0 1.1E-32 2.4E-37 190.3 13.1 156 17-177 1-162 (163)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-32 2.3E-37 190.6 12.9 157 17-178 1-163 (164)
46 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2E-32 4.3E-37 196.7 14.3 165 17-182 1-180 (222)
47 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.7E-31 3.6E-36 183.6 17.9 157 19-175 1-157 (158)
48 cd04128 Spg1 Spg1p. Spg1p (se 100.0 6.3E-32 1.4E-36 189.6 16.0 160 18-180 1-168 (182)
49 cd00877 Ran Ran (Ras-related n 100.0 1.2E-31 2.6E-36 185.7 17.1 156 18-180 1-161 (166)
50 PLN03071 GTP-binding nuclear p 100.0 8.4E-32 1.8E-36 194.1 16.7 161 13-181 9-175 (219)
51 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.8E-31 3.8E-36 183.8 17.6 157 19-175 1-159 (160)
52 KOG0095 GTPase Rab30, small G 100.0 3.6E-33 7.9E-38 181.4 8.4 161 17-181 7-172 (213)
53 cd04111 Rab39 Rab39 subfamily. 100.0 6.6E-32 1.4E-36 193.6 14.8 163 17-184 2-172 (211)
54 cd04144 Ras2 Ras2 subfamily. 100.0 3E-32 6.4E-37 192.7 12.6 162 19-185 1-170 (190)
55 cd04155 Arl3 Arl3 subfamily. 100.0 5.7E-31 1.2E-35 183.5 18.7 166 10-175 7-172 (173)
56 KOG0079 GTP-binding protein H- 100.0 2.7E-33 5.8E-38 181.6 6.4 159 18-181 9-172 (198)
57 cd04119 RJL RJL (RabJ-Like) su 100.0 6.7E-32 1.4E-36 187.0 13.8 157 18-179 1-168 (168)
58 cd04134 Rho3 Rho3 subfamily. 100.0 6.3E-32 1.4E-36 190.9 13.4 162 18-181 1-177 (189)
59 cd01865 Rab3 Rab3 subfamily. 100.0 9.9E-32 2.2E-36 186.0 14.0 156 18-179 2-164 (165)
60 cd01867 Rab8_Rab10_Rab13_like 100.0 1.2E-31 2.6E-36 186.0 14.2 159 16-180 2-167 (167)
61 cd04117 Rab15 Rab15 subfamily. 100.0 1.2E-31 2.6E-36 184.9 13.8 153 18-176 1-160 (161)
62 cd01871 Rac1_like Rac1-like su 100.0 4.8E-32 1.1E-36 189.0 11.8 159 17-176 1-173 (174)
63 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.5E-31 3.3E-36 185.9 14.2 160 19-179 2-166 (170)
64 smart00173 RAS Ras subfamily o 100.0 1.1E-31 2.3E-36 185.6 13.4 157 18-179 1-163 (164)
65 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-31 2.5E-36 184.7 13.3 156 17-177 1-161 (162)
66 cd04176 Rap2 Rap2 subgroup. T 100.0 9.1E-32 2E-36 185.8 12.7 156 17-177 1-162 (163)
67 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.3E-31 2.9E-36 185.0 13.1 156 17-177 2-163 (164)
68 cd04110 Rab35 Rab35 subfamily. 100.0 2.9E-31 6.2E-36 188.9 15.1 160 16-182 5-171 (199)
69 cd04125 RabA_like RabA-like su 100.0 2E-31 4.3E-36 188.3 13.7 162 18-185 1-169 (188)
70 cd04109 Rab28 Rab28 subfamily. 100.0 3E-31 6.5E-36 191.0 14.4 158 18-180 1-168 (215)
71 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.2E-30 2.5E-35 180.9 16.8 157 19-175 1-166 (167)
72 cd04140 ARHI_like ARHI subfami 100.0 1.9E-31 4.2E-36 184.6 12.8 154 18-176 2-163 (165)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.4E-31 7.3E-36 183.5 13.9 157 17-179 2-165 (166)
74 cd04103 Centaurin_gamma Centau 100.0 2.7E-31 5.8E-36 182.4 13.2 153 18-176 1-157 (158)
75 PLN03110 Rab GTPase; Provision 100.0 5E-31 1.1E-35 189.8 14.3 162 15-181 10-177 (216)
76 KOG0091 GTPase Rab39, small G 100.0 6.7E-32 1.4E-36 177.9 8.3 166 15-183 6-178 (213)
77 cd04112 Rab26 Rab26 subfamily. 100.0 5.6E-31 1.2E-35 186.4 13.7 159 18-182 1-167 (191)
78 cd01868 Rab11_like Rab11-like. 100.0 1E-30 2.2E-35 180.8 13.8 155 17-177 3-164 (165)
79 cd04124 RabL2 RabL2 subfamily. 100.0 3.8E-30 8.2E-35 177.4 16.4 155 18-180 1-160 (161)
80 cd04159 Arl10_like Arl10-like 100.0 8.7E-30 1.9E-34 174.6 17.9 157 19-175 1-158 (159)
81 PF00071 Ras: Ras family; Int 100.0 5.4E-31 1.2E-35 181.7 11.8 154 19-178 1-161 (162)
82 cd04132 Rho4_like Rho4-like su 100.0 4.3E-30 9.3E-35 181.3 16.4 159 18-183 1-172 (187)
83 cd04118 Rab24 Rab24 subfamily. 100.0 1.8E-30 3.9E-35 184.0 14.4 163 18-182 1-170 (193)
84 cd01866 Rab2 Rab2 subfamily. 100.0 1.9E-30 4.2E-35 180.1 14.1 157 17-179 4-167 (168)
85 cd04106 Rab23_lke Rab23-like s 100.0 9.7E-31 2.1E-35 180.4 12.2 152 18-176 1-161 (162)
86 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.3E-30 2.8E-35 181.3 12.8 157 17-177 2-168 (170)
87 cd01864 Rab19 Rab19 subfamily. 100.0 6.3E-30 1.4E-34 177.0 16.3 156 16-176 2-164 (165)
88 cd04142 RRP22 RRP22 subfamily. 100.0 3.1E-30 6.7E-35 183.1 14.8 165 18-186 1-182 (198)
89 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-30 3.6E-35 179.1 13.0 154 18-177 1-161 (161)
90 cd04177 RSR1 RSR1 subgroup. R 100.0 2E-30 4.3E-35 180.0 13.3 158 17-179 1-165 (168)
91 cd01873 RhoBTB RhoBTB subfamil 100.0 1E-30 2.2E-35 185.1 11.9 156 17-176 2-194 (195)
92 PLN03118 Rab family protein; P 100.0 2.7E-30 5.9E-35 185.5 13.9 162 15-181 12-180 (211)
93 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-29 3.2E-34 175.8 17.2 155 15-179 2-167 (169)
94 KOG0081 GTPase Rab27, small G 100.0 1.5E-32 3.2E-37 180.3 1.9 164 18-184 10-187 (219)
95 smart00176 RAN Ran (Ras-relate 100.0 7.2E-30 1.6E-34 181.1 15.8 150 23-180 1-156 (200)
96 smart00174 RHO Rho (Ras homolo 100.0 1.8E-30 3.9E-35 181.1 12.3 158 20-179 1-173 (174)
97 smart00175 RAB Rab subfamily o 100.0 3.5E-30 7.5E-35 177.9 13.6 157 18-180 1-164 (164)
98 cd04143 Rhes_like Rhes_like su 100.0 1.5E-29 3.3E-34 184.9 17.3 158 18-179 1-172 (247)
99 cd04116 Rab9 Rab9 subfamily. 100.0 1.3E-29 2.9E-34 176.1 16.2 159 15-177 3-170 (170)
100 cd01860 Rab5_related Rab5-rela 100.0 3.4E-30 7.4E-35 177.8 12.9 155 17-177 1-162 (163)
101 KOG0075 GTP-binding ADP-ribosy 100.0 6E-30 1.3E-34 165.7 12.7 166 13-178 16-182 (186)
102 KOG0088 GTPase Rab21, small G 100.0 4.3E-31 9.4E-36 173.2 7.0 168 14-185 10-182 (218)
103 cd01861 Rab6 Rab6 subfamily. 100.0 6.9E-30 1.5E-34 176.0 13.5 153 18-176 1-160 (161)
104 cd04135 Tc10 TC10 subfamily. 100.0 7.2E-30 1.6E-34 178.1 13.5 160 18-178 1-174 (174)
105 PLN03108 Rab family protein; P 100.0 6.4E-30 1.4E-34 183.3 13.3 160 16-181 5-171 (210)
106 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.7E-30 1.5E-34 178.2 12.5 155 18-174 1-170 (173)
107 cd04101 RabL4 RabL4 (Rab-like4 100.0 9.6E-30 2.1E-34 175.8 13.1 154 18-177 1-163 (164)
108 cd04148 RGK RGK subfamily. Th 100.0 1.8E-29 3.9E-34 182.2 14.7 157 18-181 1-166 (221)
109 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-29 4.9E-34 173.7 14.3 157 18-179 1-163 (164)
110 cd01862 Rab7 Rab7 subfamily. 100.0 7.6E-29 1.6E-33 172.5 16.9 161 18-182 1-171 (172)
111 cd01863 Rab18 Rab18 subfamily. 100.0 2.5E-29 5.5E-34 173.2 14.0 154 18-176 1-160 (161)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2.9E-29 6.3E-34 173.8 14.3 158 18-179 1-165 (166)
113 cd04146 RERG_RasL11_like RERG/ 100.0 9.3E-30 2E-34 176.1 11.1 155 19-178 1-164 (165)
114 cd01870 RhoA_like RhoA-like su 100.0 1.9E-28 4.1E-33 171.0 15.2 160 17-177 1-174 (175)
115 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-28 2.3E-33 170.0 13.6 154 18-177 1-161 (162)
116 KOG0072 GTP-binding ADP-ribosy 100.0 6E-29 1.3E-33 160.6 10.8 180 1-180 1-181 (182)
117 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.5E-31 1.6E-35 167.6 1.3 157 21-186 1-168 (192)
118 cd04147 Ras_dva Ras-dva subfam 100.0 4.9E-28 1.1E-32 172.2 15.7 156 19-178 1-163 (198)
119 cd00157 Rho Rho (Ras homology) 100.0 1.1E-28 2.4E-33 171.5 11.9 157 18-175 1-170 (171)
120 cd04137 RheB Rheb (Ras Homolog 100.0 1.9E-28 4.1E-33 171.8 12.9 163 18-185 2-170 (180)
121 cd04129 Rho2 Rho2 subfamily. 100.0 6.8E-28 1.5E-32 170.0 15.8 170 17-188 1-183 (187)
122 KOG0395 Ras-related GTPase [Ge 100.0 1.4E-28 3.1E-33 173.3 11.4 161 16-179 2-166 (196)
123 cd04114 Rab30 Rab30 subfamily. 100.0 7.1E-28 1.5E-32 167.2 14.3 157 16-177 6-168 (169)
124 KOG0097 GTPase Rab14, small G 100.0 2E-28 4.3E-33 158.1 9.7 162 15-182 9-177 (215)
125 cd00154 Rab Rab family. Rab G 100.0 2.7E-27 5.9E-32 162.0 15.3 151 18-174 1-158 (159)
126 cd00876 Ras Ras family. The R 100.0 8.4E-28 1.8E-32 165.2 12.7 154 19-177 1-160 (160)
127 PTZ00132 GTP-binding nuclear p 100.0 6E-27 1.3E-31 168.7 17.3 164 12-182 4-172 (215)
128 KOG0076 GTP-binding ADP-ribosy 99.9 9.7E-28 2.1E-32 159.7 8.5 179 2-180 2-189 (197)
129 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.5E-26 5.3E-31 163.0 16.1 116 18-133 1-144 (202)
130 KOG0393 Ras-related small GTPa 99.9 2.7E-27 5.9E-32 163.7 9.0 166 15-181 2-182 (198)
131 cd01897 NOG NOG1 is a nucleola 99.9 1.8E-25 3.9E-30 155.0 16.2 153 19-178 2-168 (168)
132 cd01898 Obg Obg subfamily. Th 99.9 2.8E-25 6E-30 154.3 14.5 155 19-176 2-169 (170)
133 KOG0074 GTP-binding ADP-ribosy 99.9 3.5E-25 7.6E-30 142.8 12.1 165 13-177 13-178 (185)
134 cd01890 LepA LepA subfamily. 99.9 6.8E-25 1.5E-29 153.6 14.1 149 19-177 2-176 (179)
135 cd04171 SelB SelB subfamily. 99.9 7.6E-25 1.6E-29 151.1 13.3 151 19-175 2-163 (164)
136 PLN00023 GTP-binding protein; 99.9 9.4E-25 2E-29 162.3 13.4 124 10-133 14-166 (334)
137 cd01878 HflX HflX subfamily. 99.9 2.1E-24 4.6E-29 154.2 14.0 153 15-177 39-204 (204)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-24 7.2E-29 148.5 14.2 154 19-178 2-166 (168)
139 TIGR00231 small_GTP small GTP- 99.9 1.1E-23 2.3E-28 144.0 15.9 153 17-174 1-160 (161)
140 PRK03003 GTP-binding protein D 99.9 1.4E-23 3E-28 166.7 17.6 161 16-181 210-385 (472)
141 PRK15494 era GTPase Era; Provi 99.9 1.7E-23 3.7E-28 159.5 17.0 159 15-182 50-220 (339)
142 PRK04213 GTP-binding protein; 99.9 1.4E-24 3E-29 154.8 10.0 161 14-180 6-194 (201)
143 TIGR02528 EutP ethanolamine ut 99.9 2.1E-24 4.6E-29 145.7 10.0 134 19-174 2-141 (142)
144 PRK12299 obgE GTPase CgtA; Rev 99.9 1.4E-23 3E-28 159.1 15.4 159 18-180 159-330 (335)
145 COG1100 GTPase SAR1 and relate 99.9 1.4E-23 2.9E-28 151.6 13.7 167 16-182 4-189 (219)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 2.6E-23 5.5E-28 147.5 14.4 158 18-180 3-190 (194)
147 cd00881 GTP_translation_factor 99.9 7.4E-23 1.6E-27 144.2 16.6 154 19-177 1-186 (189)
148 PTZ00099 rab6; Provisional 99.9 7.4E-24 1.6E-28 147.7 11.0 133 44-182 8-146 (176)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1E-22 2.2E-27 139.3 16.5 143 18-177 2-156 (157)
150 cd01894 EngA1 EngA1 subfamily. 99.9 4.6E-23 9.9E-28 141.1 14.1 145 21-177 1-157 (157)
151 cd00882 Ras_like_GTPase Ras-li 99.9 1.5E-23 3.3E-28 142.0 11.6 150 22-174 1-156 (157)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-22 2.2E-27 159.7 17.6 152 15-182 201-364 (442)
153 TIGR00436 era GTP-binding prot 99.9 9.8E-23 2.1E-27 151.3 16.4 154 19-181 2-167 (270)
154 cd04105 SR_beta Signal recogni 99.9 5.8E-23 1.3E-27 146.4 14.5 157 19-175 2-202 (203)
155 TIGR03156 GTP_HflX GTP-binding 99.9 5.9E-23 1.3E-27 156.9 15.1 150 16-176 188-350 (351)
156 PRK03003 GTP-binding protein D 99.9 7.4E-23 1.6E-27 162.6 16.1 152 16-179 37-200 (472)
157 cd01881 Obg_like The Obg-like 99.9 2.9E-23 6.3E-28 144.8 12.0 152 22-176 1-175 (176)
158 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-22 2.9E-27 159.9 16.9 161 16-181 171-347 (429)
159 KOG4252 GTP-binding protein [S 99.9 1.8E-25 3.9E-30 149.8 0.2 161 16-183 19-186 (246)
160 cd01889 SelB_euk SelB subfamil 99.9 6.7E-23 1.5E-27 145.1 13.4 157 18-179 1-187 (192)
161 PRK05291 trmE tRNA modificatio 99.9 2.3E-22 5E-27 158.4 17.1 147 15-179 213-371 (449)
162 cd01879 FeoB Ferrous iron tran 99.9 3.7E-22 8E-27 136.9 15.4 145 22-177 1-156 (158)
163 cd01895 EngA2 EngA2 subfamily. 99.9 7E-22 1.5E-26 137.2 16.8 155 17-176 2-173 (174)
164 TIGR02729 Obg_CgtA Obg family 99.9 2.2E-22 4.9E-27 152.4 15.3 156 18-177 158-328 (329)
165 PF02421 FeoB_N: Ferrous iron 99.9 2.5E-22 5.5E-27 135.7 13.0 141 18-173 1-156 (156)
166 PRK11058 GTPase HflX; Provisio 99.9 1.5E-21 3.2E-26 152.3 17.5 155 18-180 198-364 (426)
167 PRK00454 engB GTP-binding prot 99.9 6E-22 1.3E-26 140.6 13.1 163 10-179 17-195 (196)
168 PF08477 Miro: Miro-like prote 99.9 7E-23 1.5E-27 134.2 7.7 109 19-129 1-119 (119)
169 cd04163 Era Era subfamily. Er 99.9 1.7E-21 3.7E-26 134.3 14.3 153 16-176 2-167 (168)
170 TIGR00487 IF-2 translation ini 99.9 2.3E-21 5E-26 156.3 16.8 157 14-176 84-248 (587)
171 PRK15467 ethanolamine utilizat 99.9 7.1E-22 1.5E-26 135.6 11.9 144 19-181 3-150 (158)
172 PRK09518 bifunctional cytidyla 99.9 3.5E-21 7.7E-26 159.5 17.1 161 16-181 449-624 (712)
173 PRK00093 GTP-binding protein D 99.9 4.1E-21 8.9E-26 151.7 16.2 161 15-180 171-346 (435)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 9.9E-22 2.1E-26 140.2 11.4 156 18-178 1-199 (203)
175 PRK00093 GTP-binding protein D 99.9 3E-21 6.4E-26 152.5 15.2 148 18-177 2-161 (435)
176 PF00009 GTP_EFTU: Elongation 99.9 6.8E-22 1.5E-26 139.5 10.3 156 16-177 2-186 (188)
177 PRK12296 obgE GTPase CgtA; Rev 99.9 4E-21 8.8E-26 151.1 15.5 159 18-181 160-343 (500)
178 TIGR01393 lepA GTP-binding pro 99.9 5.3E-21 1.1E-25 154.9 16.5 153 17-179 3-181 (595)
179 cd00880 Era_like Era (E. coli 99.9 4.8E-21 1E-25 130.9 14.0 150 22-176 1-162 (163)
180 TIGR03594 GTPase_EngA ribosome 99.9 3.5E-21 7.6E-26 151.9 14.8 148 19-179 1-161 (429)
181 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-20 2.9E-25 146.3 17.4 154 19-180 160-329 (424)
182 TIGR03598 GTPase_YsxC ribosome 99.9 1.3E-21 2.9E-26 137.0 10.6 149 10-167 11-179 (179)
183 PRK00089 era GTPase Era; Revie 99.9 9.5E-21 2.1E-25 142.4 15.6 158 16-181 4-174 (292)
184 PRK05306 infB translation init 99.9 1.7E-20 3.7E-25 154.8 17.4 157 14-176 287-450 (787)
185 COG2229 Predicted GTPase [Gene 99.9 1.8E-20 3.9E-25 126.8 14.1 157 13-176 6-176 (187)
186 COG1160 Predicted GTPases [Gen 99.9 4E-21 8.6E-26 146.8 12.0 148 18-177 4-164 (444)
187 TIGR00475 selB selenocysteine- 99.9 5.2E-21 1.1E-25 154.8 12.3 156 18-179 1-167 (581)
188 PRK09518 bifunctional cytidyla 99.9 2.4E-20 5.2E-25 154.6 15.9 154 14-179 272-437 (712)
189 CHL00189 infB translation init 99.9 2.7E-20 5.8E-25 152.5 15.8 158 14-177 241-409 (742)
190 PRK12317 elongation factor 1-a 99.9 1.6E-20 3.5E-25 147.7 13.4 155 14-170 3-197 (425)
191 KOG3883 Ras family small GTPas 99.8 5.3E-20 1.1E-24 120.5 13.1 163 16-181 8-178 (198)
192 PRK05433 GTP-binding protein L 99.8 1.1E-19 2.3E-24 147.5 17.2 156 15-180 5-186 (600)
193 TIGR00483 EF-1_alpha translati 99.8 1.2E-20 2.6E-25 148.5 11.3 155 14-170 4-199 (426)
194 cd01896 DRG The developmentall 99.8 2.9E-19 6.3E-24 129.8 17.2 149 19-177 2-225 (233)
195 PRK12298 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.8E-24 140.1 15.7 160 19-180 161-335 (390)
196 KOG1673 Ras GTPases [General f 99.8 1E-20 2.2E-25 124.2 7.9 170 15-186 18-194 (205)
197 COG0486 ThdF Predicted GTPase 99.8 3.4E-19 7.3E-24 136.7 16.7 155 12-180 212-378 (454)
198 COG1159 Era GTPase [General fu 99.8 9.1E-20 2E-24 132.6 12.8 159 15-181 4-175 (298)
199 cd04168 TetM_like Tet(M)-like 99.8 4.6E-19 1E-23 129.0 15.6 109 19-132 1-130 (237)
200 TIGR01394 TypA_BipA GTP-bindin 99.8 1.9E-19 4.1E-24 145.6 14.3 157 18-179 2-192 (594)
201 TIGR00437 feoB ferrous iron tr 99.8 1.8E-19 4E-24 146.0 14.2 139 24-177 1-154 (591)
202 TIGR00491 aIF-2 translation in 99.8 2.2E-19 4.8E-24 144.7 14.6 153 17-177 4-215 (590)
203 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5.9E-20 1.3E-24 124.4 9.3 157 17-180 10-171 (216)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.6E-19 3.5E-24 129.3 11.7 148 19-170 1-186 (208)
205 COG1160 Predicted GTPases [Gen 99.8 8.4E-19 1.8E-23 134.2 15.9 160 16-180 177-353 (444)
206 TIGR03680 eif2g_arch translati 99.8 1.2E-19 2.6E-24 141.7 11.6 159 15-178 2-196 (406)
207 PRK10218 GTP-binding protein; 99.8 5.9E-19 1.3E-23 142.7 15.4 159 15-178 3-195 (607)
208 PRK09554 feoB ferrous iron tra 99.8 1E-18 2.2E-23 144.9 15.7 147 16-177 2-167 (772)
209 PRK04004 translation initiatio 99.8 1.1E-18 2.3E-23 141.2 14.9 155 15-177 4-217 (586)
210 PRK04000 translation initiatio 99.8 5.2E-19 1.1E-23 138.1 12.2 161 14-179 6-202 (411)
211 cd01883 EF1_alpha Eukaryotic e 99.8 2.9E-19 6.3E-24 128.9 9.8 146 19-167 1-194 (219)
212 KOG0077 Vesicle coat complex C 99.8 1.9E-19 4.1E-24 119.5 7.2 161 15-175 18-190 (193)
213 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.9E-18 4.2E-23 122.1 12.8 146 17-167 2-172 (195)
214 PRK10512 selenocysteinyl-tRNA- 99.8 9.3E-19 2E-23 142.3 12.6 156 19-179 2-167 (614)
215 COG0218 Predicted GTPase [Gene 99.8 4.1E-18 8.8E-23 117.8 13.4 161 9-179 16-198 (200)
216 PF10662 PduV-EutP: Ethanolami 99.8 6.9E-19 1.5E-23 116.5 9.3 134 19-174 3-142 (143)
217 cd01876 YihA_EngB The YihA (En 99.8 1.9E-18 4.1E-23 119.3 11.6 152 19-176 1-169 (170)
218 KOG4423 GTP-binding protein-li 99.8 2.4E-20 5.2E-25 125.9 1.5 166 18-187 26-203 (229)
219 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.2E-18 9.1E-23 122.9 12.5 151 19-174 1-219 (224)
220 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.7E-18 8.1E-23 122.7 10.0 166 19-186 1-184 (232)
221 KOG0090 Signal recognition par 99.8 2.1E-17 4.5E-22 114.4 13.2 162 14-176 35-237 (238)
222 KOG1707 Predicted Ras related/ 99.8 1.8E-18 4E-23 134.9 8.8 165 14-184 6-181 (625)
223 cd04169 RF3 RF3 subfamily. Pe 99.8 2.4E-17 5.1E-22 121.9 13.9 124 17-145 2-153 (267)
224 PRK12736 elongation factor Tu; 99.8 7.9E-18 1.7E-22 131.1 11.7 159 14-177 9-200 (394)
225 cd01886 EF-G Elongation factor 99.8 2.9E-17 6.3E-22 121.6 14.1 109 19-132 1-130 (270)
226 cd04170 EF-G_bact Elongation f 99.8 4.5E-17 9.6E-22 121.0 15.1 110 19-133 1-131 (268)
227 PRK12735 elongation factor Tu; 99.8 1.2E-17 2.5E-22 130.2 11.9 158 15-177 10-202 (396)
228 COG0532 InfB Translation initi 99.7 5.3E-17 1.1E-21 126.3 14.4 156 16-177 4-169 (509)
229 cd04167 Snu114p Snu114p subfam 99.7 4.8E-17 1E-21 117.0 12.9 108 19-131 2-136 (213)
230 PRK13351 elongation factor G; 99.7 6.3E-17 1.4E-21 134.2 15.3 115 14-133 5-140 (687)
231 KOG1423 Ras-like GTPase ERA [C 99.7 3E-17 6.5E-22 119.5 11.2 163 14-182 69-275 (379)
232 COG1084 Predicted GTPase [Gene 99.7 7.4E-17 1.6E-21 118.7 13.4 158 16-180 167-338 (346)
233 PF09439 SRPRB: Signal recogni 99.7 6E-18 1.3E-22 116.8 7.2 124 16-140 2-134 (181)
234 cd04104 p47_IIGP_like p47 (47- 99.7 2.8E-17 6.1E-22 116.7 10.9 157 17-180 1-186 (197)
235 TIGR00485 EF-Tu translation el 99.7 9.7E-17 2.1E-21 125.1 14.8 146 14-164 9-179 (394)
236 COG0370 FeoB Fe2+ transport sy 99.7 1.1E-16 2.4E-21 127.8 14.6 151 16-181 2-167 (653)
237 PRK00741 prfC peptide chain re 99.7 3.2E-16 6.9E-21 125.5 17.0 114 15-133 8-146 (526)
238 CHL00071 tufA elongation facto 99.7 4.5E-17 9.8E-22 127.4 11.7 148 14-166 9-181 (409)
239 PLN00043 elongation factor 1-a 99.7 2.8E-17 6.1E-22 129.4 10.3 150 14-168 4-203 (447)
240 TIGR02034 CysN sulfate adenyly 99.7 5.1E-17 1.1E-21 127.0 11.0 147 18-168 1-187 (406)
241 PRK05124 cysN sulfate adenylyl 99.7 3.3E-17 7.2E-22 130.0 10.0 152 14-170 24-217 (474)
242 PRK05506 bifunctional sulfate 99.7 6E-17 1.3E-21 133.1 11.4 160 5-168 12-211 (632)
243 PRK00049 elongation factor Tu; 99.7 1.3E-16 2.8E-21 124.3 11.9 157 15-176 10-201 (396)
244 PLN03126 Elongation factor Tu; 99.7 8.1E-17 1.8E-21 127.4 10.7 147 14-165 78-249 (478)
245 KOG1489 Predicted GTP-binding 99.7 2.2E-16 4.8E-21 115.5 11.9 146 19-175 198-364 (366)
246 cd01885 EF2 EF2 (for archaea a 99.7 2.3E-16 4.9E-21 113.5 11.8 108 19-131 2-138 (222)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 1E-15 2.3E-20 99.7 13.6 103 19-127 1-116 (116)
248 KOG0462 Elongation factor-type 99.7 3.6E-16 7.8E-21 121.6 12.5 159 15-180 58-237 (650)
249 KOG1145 Mitochondrial translat 99.7 3.4E-16 7.3E-21 121.8 12.3 160 13-178 149-316 (683)
250 PTZ00141 elongation factor 1- 99.7 2.8E-16 6E-21 123.9 11.9 151 14-168 4-203 (446)
251 PLN03127 Elongation factor Tu; 99.7 1E-15 2.2E-20 120.6 14.0 159 14-177 58-251 (447)
252 smart00275 G_alpha G protein a 99.7 2E-15 4.4E-20 115.2 13.6 135 47-181 170-337 (342)
253 cd00066 G-alpha G protein alph 99.7 1.9E-15 4E-20 114.6 13.2 135 47-181 147-314 (317)
254 COG2262 HflX GTPases [General 99.7 7.9E-15 1.7E-19 111.1 15.6 156 15-181 190-359 (411)
255 TIGR00484 EF-G translation elo 99.7 3.2E-15 6.9E-20 124.0 14.8 116 14-134 7-143 (689)
256 PTZ00327 eukaryotic translatio 99.7 1.1E-15 2.5E-20 120.2 11.5 160 15-178 32-233 (460)
257 COG5256 TEF1 Translation elong 99.7 4.7E-16 1E-20 117.6 8.7 155 15-169 5-202 (428)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.5E-15 1.2E-19 105.0 13.3 160 18-179 1-185 (196)
259 COG1163 DRG Predicted GTPase [ 99.6 1.1E-14 2.4E-19 107.0 14.6 152 16-177 62-288 (365)
260 COG0481 LepA Membrane GTPase L 99.6 2.7E-15 5.8E-20 115.1 11.1 157 15-181 7-189 (603)
261 cd01899 Ygr210 Ygr210 subfamil 99.6 4.4E-15 9.5E-20 112.0 12.3 77 20-96 1-111 (318)
262 TIGR00503 prfC peptide chain r 99.6 5.9E-15 1.3E-19 118.3 12.6 113 15-132 9-146 (527)
263 KOG1191 Mitochondrial GTPase [ 99.6 2.1E-14 4.5E-19 110.7 14.2 164 15-182 266-454 (531)
264 COG0536 Obg Predicted GTPase [ 99.6 2E-14 4.4E-19 106.4 12.0 155 19-181 161-336 (369)
265 PRK12740 elongation factor G; 99.6 5.1E-14 1.1E-18 116.8 15.5 106 23-133 1-127 (668)
266 PRK12739 elongation factor G; 99.6 1.5E-14 3.3E-19 120.0 12.1 116 14-134 5-141 (691)
267 cd01850 CDC_Septin CDC/Septin. 99.6 1.3E-14 2.8E-19 107.9 10.5 112 17-133 4-158 (276)
268 PRK00007 elongation factor G; 99.6 4.2E-14 9.1E-19 117.3 12.2 116 14-134 7-143 (693)
269 PRK14845 translation initiatio 99.5 8.4E-14 1.8E-18 118.1 13.0 142 28-177 472-672 (1049)
270 KOG1490 GTP-binding protein CR 99.5 1.5E-14 3.3E-19 111.6 7.2 164 14-179 165-342 (620)
271 COG3596 Predicted GTPase [Gene 99.5 8.2E-14 1.8E-18 100.6 9.3 164 12-179 34-223 (296)
272 KOG0082 G-protein alpha subuni 99.5 1.3E-13 2.7E-18 103.9 10.7 135 47-181 181-347 (354)
273 PRK09602 translation-associate 99.5 5.6E-13 1.2E-17 103.5 13.9 78 18-95 2-113 (396)
274 COG2895 CysN GTPases - Sulfate 99.5 1.8E-13 3.8E-18 101.8 10.3 148 15-167 4-192 (431)
275 TIGR00490 aEF-2 translation el 99.5 8.2E-14 1.8E-18 116.0 9.4 113 15-132 17-152 (720)
276 PRK13768 GTPase; Provisional 99.5 8.4E-14 1.8E-18 102.4 8.3 117 61-178 97-247 (253)
277 PRK09866 hypothetical protein; 99.5 9.1E-13 2E-17 105.7 14.3 113 61-176 230-351 (741)
278 COG1217 TypA Predicted membran 99.5 3.2E-13 7E-18 103.7 11.2 161 16-181 4-198 (603)
279 KOG1532 GTPase XAB1, interacts 99.5 4.4E-14 9.6E-19 101.7 5.6 168 11-181 13-267 (366)
280 COG4917 EutP Ethanolamine util 99.5 7.1E-14 1.5E-18 88.9 5.8 137 19-175 3-143 (148)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.7E-12 3.8E-17 96.6 14.0 117 14-132 35-167 (313)
282 PRK09435 membrane ATPase/prote 99.5 3.5E-13 7.7E-18 101.9 9.3 111 59-181 147-263 (332)
283 cd01853 Toc34_like Toc34-like 99.5 2.1E-12 4.4E-17 94.6 12.9 119 13-133 27-164 (249)
284 PF04548 AIG1: AIG1 family; I 99.5 5.2E-13 1.1E-17 95.9 9.2 162 18-181 1-189 (212)
285 PF03029 ATP_bind_1: Conserved 99.4 3.2E-13 6.9E-18 98.2 7.7 112 62-177 92-236 (238)
286 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.1E-12 2.4E-17 95.0 10.4 142 15-165 37-183 (225)
287 TIGR00101 ureG urease accessor 99.4 7.1E-12 1.5E-16 89.0 12.3 104 61-179 92-197 (199)
288 COG3276 SelB Selenocysteine-sp 99.4 4.4E-12 9.6E-17 97.0 11.4 155 19-178 2-162 (447)
289 PTZ00416 elongation factor 2; 99.4 3.2E-12 7E-17 107.9 11.0 112 15-131 17-157 (836)
290 smart00010 small_GTPase Small 99.4 4.8E-13 1E-17 87.8 4.7 113 18-167 1-115 (124)
291 PLN00116 translation elongatio 99.4 2.2E-12 4.7E-17 109.1 9.7 113 14-131 16-163 (843)
292 KOG0458 Elongation factor 1 al 99.4 2.7E-12 5.8E-17 101.0 9.2 157 10-169 170-373 (603)
293 KOG3886 GTP-binding protein [S 99.4 1.1E-12 2.3E-17 92.4 6.0 160 16-178 3-178 (295)
294 PF03308 ArgK: ArgK protein; 99.4 2.8E-12 6E-17 92.5 7.9 151 16-178 28-230 (266)
295 KOG3905 Dynein light intermedi 99.4 6.2E-12 1.3E-16 92.8 9.7 163 16-179 51-291 (473)
296 PF00503 G-alpha: G-protein al 99.3 7.5E-12 1.6E-16 97.7 10.0 130 48-177 222-389 (389)
297 TIGR00157 ribosome small subun 99.3 7E-12 1.5E-16 91.8 8.3 95 72-175 24-120 (245)
298 PF05049 IIGP: Interferon-indu 99.3 2.8E-11 6.1E-16 92.5 11.6 159 13-180 31-220 (376)
299 PRK07560 elongation factor EF- 99.3 1.5E-11 3.3E-16 102.8 10.9 112 15-131 18-152 (731)
300 KOG3887 Predicted small GTPase 99.3 2.4E-11 5.2E-16 86.4 9.2 165 18-185 28-209 (347)
301 KOG1144 Translation initiation 99.3 2E-11 4.4E-16 98.4 9.1 158 16-181 474-690 (1064)
302 TIGR00750 lao LAO/AO transport 99.3 1.4E-10 3E-15 87.5 13.0 107 60-178 126-238 (300)
303 TIGR00073 hypB hydrogenase acc 99.3 3.8E-11 8.3E-16 86.0 9.4 150 12-176 17-205 (207)
304 KOG0461 Selenocysteine-specifi 99.3 2.3E-11 5E-16 90.6 8.1 161 16-182 6-197 (522)
305 KOG1707 Predicted Ras related/ 99.3 2.5E-10 5.5E-15 90.1 14.2 158 11-181 419-586 (625)
306 COG1703 ArgK Putative periplas 99.3 7.1E-11 1.5E-15 86.6 10.0 111 60-182 143-258 (323)
307 TIGR02836 spore_IV_A stage IV 99.2 2.4E-10 5.2E-15 87.7 12.7 113 15-130 15-192 (492)
308 PF00350 Dynamin_N: Dynamin fa 99.2 9.3E-11 2E-15 81.1 9.8 64 61-128 101-168 (168)
309 COG0480 FusA Translation elong 99.2 1.3E-10 2.8E-15 95.6 12.0 115 14-133 7-143 (697)
310 COG4108 PrfC Peptide chain rel 99.2 5.7E-11 1.2E-15 90.9 8.6 127 15-146 10-164 (528)
311 COG5257 GCD11 Translation init 99.2 6.3E-11 1.4E-15 87.5 7.3 161 15-182 8-206 (415)
312 PF00735 Septin: Septin; Inte 99.2 1.6E-10 3.5E-15 86.1 9.1 121 17-142 4-166 (281)
313 COG0050 TufB GTPases - transla 99.2 2.2E-10 4.7E-15 83.7 9.1 144 15-162 10-177 (394)
314 PF05783 DLIC: Dynein light in 99.2 6.3E-10 1.4E-14 88.0 11.7 164 16-181 24-267 (472)
315 TIGR00993 3a0901s04IAP86 chlor 99.1 9.8E-10 2.1E-14 88.9 12.4 115 16-132 117-250 (763)
316 KOG0468 U5 snRNP-specific prot 99.1 3.9E-10 8.4E-15 90.3 8.6 112 14-130 125-261 (971)
317 PRK10463 hydrogenase nickel in 99.0 1.6E-10 3.4E-15 85.7 3.7 152 11-177 98-288 (290)
318 smart00053 DYNc Dynamin, GTPas 99.0 2.3E-08 4.9E-13 72.8 14.7 69 61-133 125-207 (240)
319 PTZ00258 GTP-binding protein; 99.0 1.5E-09 3.3E-14 83.9 8.2 81 15-95 19-126 (390)
320 KOG1954 Endocytosis/signaling 99.0 4.4E-09 9.6E-14 79.3 10.1 121 15-139 56-232 (532)
321 KOG0705 GTPase-activating prot 99.0 6.8E-10 1.5E-14 87.2 5.7 159 16-180 29-191 (749)
322 cd01900 YchF YchF subfamily. 99.0 1.5E-09 3.3E-14 80.3 6.9 76 20-95 1-103 (274)
323 KOG1486 GTP-binding protein DR 99.0 3.8E-08 8.2E-13 70.8 13.1 85 15-99 60-154 (364)
324 COG0378 HypB Ni2+-binding GTPa 99.0 1E-08 2.3E-13 71.0 9.6 148 15-177 10-200 (202)
325 cd04178 Nucleostemin_like Nucl 99.0 2.9E-09 6.2E-14 73.9 6.9 54 16-70 116-171 (172)
326 PRK09601 GTP-binding protein Y 98.9 4.8E-09 1E-13 80.3 8.4 78 18-95 3-107 (364)
327 KOG0099 G protein subunit Galp 98.9 6.1E-09 1.3E-13 75.1 8.3 133 48-180 189-371 (379)
328 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.6E-09 1E-13 71.9 7.5 55 15-70 100-156 (157)
329 cd01859 MJ1464 MJ1464. This f 98.9 4.4E-09 9.5E-14 71.9 6.8 95 74-178 2-96 (156)
330 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.6E-09 1E-13 70.7 6.5 52 19-71 85-138 (141)
331 KOG0410 Predicted GTP binding 98.9 3.9E-09 8.6E-14 78.2 6.2 149 16-179 177-342 (410)
332 PRK12289 GTPase RsgA; Reviewed 98.9 9.8E-09 2.1E-13 78.8 7.6 90 78-176 83-173 (352)
333 COG5019 CDC3 Septin family pro 98.9 2.7E-08 5.8E-13 75.1 9.6 123 15-142 21-186 (373)
334 KOG0085 G protein subunit Galp 98.8 2E-09 4.3E-14 76.3 3.2 134 47-181 185-352 (359)
335 KOG0459 Polypeptide release fa 98.8 5.1E-09 1.1E-13 79.7 5.4 160 12-171 74-279 (501)
336 cd01855 YqeH YqeH. YqeH is an 98.8 1.1E-08 2.3E-13 72.4 6.4 97 74-178 24-125 (190)
337 KOG2655 Septin family protein 98.8 7.3E-08 1.6E-12 73.2 11.0 122 16-142 20-182 (366)
338 COG5258 GTPBP1 GTPase [General 98.8 2.7E-08 5.8E-13 75.5 7.3 160 14-178 114-339 (527)
339 cd01859 MJ1464 MJ1464. This f 98.8 3.2E-08 6.8E-13 67.7 6.9 55 16-70 100-155 (156)
340 PRK00098 GTPase RsgA; Reviewed 98.8 2.5E-08 5.3E-13 75.3 6.7 87 81-175 77-164 (298)
341 PRK12288 GTPase RsgA; Reviewed 98.7 5E-08 1.1E-12 74.9 8.2 89 82-176 118-206 (347)
342 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.5E-08 9.8E-13 73.5 7.8 88 79-175 73-161 (287)
343 cd01856 YlqF YlqF. Proteins o 98.7 3.4E-08 7.3E-13 68.6 6.3 56 15-71 113-170 (171)
344 cd01855 YqeH YqeH. YqeH is an 98.7 3.7E-08 8E-13 69.6 6.5 54 16-70 126-189 (190)
345 COG5192 BMS1 GTP-binding prote 98.7 7.5E-08 1.6E-12 76.5 8.6 140 16-162 68-210 (1077)
346 KOG0467 Translation elongation 98.7 6.2E-08 1.3E-12 79.0 8.3 108 14-129 6-135 (887)
347 KOG2486 Predicted GTPase [Gene 98.7 1.7E-08 3.7E-13 73.4 4.4 156 13-174 132-312 (320)
348 COG1161 Predicted GTPases [Gen 98.7 4.5E-08 9.8E-13 74.5 6.6 58 14-72 129-188 (322)
349 TIGR03596 GTPase_YlqF ribosome 98.7 5.5E-08 1.2E-12 72.7 6.7 55 16-71 117-173 (276)
350 KOG0460 Mitochondrial translat 98.7 3E-07 6.5E-12 68.9 10.2 140 15-161 52-218 (449)
351 PRK09563 rbgA GTPase YlqF; Rev 98.7 7E-08 1.5E-12 72.5 7.0 57 15-72 119-177 (287)
352 cd01851 GBP Guanylate-binding 98.6 8E-07 1.7E-11 64.4 11.5 84 15-98 5-105 (224)
353 KOG0465 Mitochondrial elongati 98.6 1.8E-07 3.9E-12 74.7 7.7 113 15-132 37-170 (721)
354 KOG0448 Mitofusin 1 GTPase, in 98.6 9.3E-07 2E-11 71.6 11.5 119 10-133 102-276 (749)
355 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.9E-07 6.2E-12 63.0 7.6 90 81-177 5-94 (157)
356 cd01849 YlqF_related_GTPase Yl 98.6 3E-07 6.4E-12 62.9 7.3 53 15-70 98-154 (155)
357 cd01849 YlqF_related_GTPase Yl 98.6 3E-07 6.5E-12 62.8 7.2 83 86-177 1-84 (155)
358 KOG1143 Predicted translation 98.6 4.3E-07 9.3E-12 68.9 8.5 151 16-171 166-381 (591)
359 KOG1487 GTP-binding protein DR 98.6 7.1E-07 1.5E-11 64.6 9.1 87 18-104 60-156 (358)
360 TIGR03597 GTPase_YqeH ribosome 98.6 9.9E-08 2.2E-12 73.9 5.2 97 71-176 50-151 (360)
361 COG0012 Predicted GTPase, prob 98.5 6.3E-07 1.4E-11 68.2 8.7 80 17-96 2-109 (372)
362 TIGR00092 GTP-binding protein 98.5 7.3E-07 1.6E-11 68.5 9.1 78 18-95 3-108 (368)
363 KOG1491 Predicted GTP-binding 98.5 5.2E-07 1.1E-11 67.6 7.5 82 15-96 18-126 (391)
364 cd01856 YlqF YlqF. Proteins o 98.5 2.6E-07 5.7E-12 64.2 5.7 91 75-177 10-100 (171)
365 KOG0464 Elongation factor G [T 98.5 3.7E-08 8E-13 75.6 0.3 114 14-132 34-168 (753)
366 TIGR03348 VI_IcmF type VI secr 98.4 2.3E-06 5E-11 75.5 10.2 112 20-133 114-258 (1169)
367 TIGR03596 GTPase_YlqF ribosome 98.4 7E-07 1.5E-11 66.8 6.1 92 76-179 13-104 (276)
368 PRK14974 cell division protein 98.4 3.5E-06 7.7E-11 64.4 9.1 145 16-177 139-329 (336)
369 KOG0447 Dynamin-like GTP bindi 98.4 1E-05 2.2E-10 64.5 11.7 92 62-156 413-519 (980)
370 PRK12288 GTPase RsgA; Reviewed 98.4 7.3E-07 1.6E-11 68.5 5.3 54 19-75 207-271 (347)
371 KOG1547 Septin CDC10 and relat 98.3 3.7E-06 8E-11 60.3 7.8 123 17-144 46-210 (336)
372 PRK10416 signal recognition pa 98.3 7.9E-06 1.7E-10 62.2 10.1 140 16-172 113-304 (318)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.4E-06 3E-11 58.6 5.4 78 80-165 7-84 (141)
374 TIGR00064 ftsY signal recognit 98.3 8E-06 1.7E-10 60.9 9.6 144 16-176 71-266 (272)
375 PF03193 DUF258: Protein of un 98.3 7.1E-07 1.5E-11 60.8 3.6 24 18-41 36-59 (161)
376 KOG0463 GTP-binding protein GP 98.3 3.4E-06 7.4E-11 64.3 7.4 151 17-172 133-352 (641)
377 PRK13796 GTPase YqeH; Provisio 98.3 3.2E-06 6.9E-11 65.7 7.2 56 16-72 159-221 (365)
378 PRK12289 GTPase RsgA; Reviewed 98.3 2.6E-06 5.6E-11 65.6 6.5 23 19-41 174-196 (352)
379 TIGR03597 GTPase_YqeH ribosome 98.3 1.8E-06 4E-11 66.9 5.7 57 17-74 154-217 (360)
380 cd03112 CobW_like The function 98.3 9.1E-06 2E-10 55.7 8.5 64 61-130 87-158 (158)
381 PRK09563 rbgA GTPase YlqF; Rev 98.2 2E-06 4.3E-11 64.7 5.3 101 68-180 7-108 (287)
382 TIGR01425 SRP54_euk signal rec 98.2 7.2E-06 1.6E-10 64.5 8.5 109 17-132 100-253 (429)
383 KOG1424 Predicted GTP-binding 98.2 1.4E-06 3.1E-11 68.5 4.2 54 17-71 314-369 (562)
384 cd03114 ArgK-like The function 98.2 1.3E-05 2.8E-10 54.3 8.4 58 60-129 91-148 (148)
385 TIGR00157 ribosome small subun 98.2 4E-06 8.8E-11 61.6 6.1 53 18-74 121-184 (245)
386 PRK01889 GTPase RsgA; Reviewed 98.1 2.5E-05 5.4E-10 60.5 8.9 84 82-174 110-193 (356)
387 KOG0466 Translation initiation 98.1 3.7E-06 8.1E-11 62.3 3.5 114 62-181 126-244 (466)
388 PRK13796 GTPase YqeH; Provisio 98.1 9.9E-06 2.2E-10 62.9 5.9 95 73-176 58-157 (365)
389 PF00448 SRP54: SRP54-type pro 98.1 1.2E-05 2.5E-10 57.1 5.7 108 18-133 2-155 (196)
390 KOG3859 Septins (P-loop GTPase 98.0 1.1E-05 2.5E-10 59.1 5.6 114 16-134 41-192 (406)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.0 2.1E-05 4.5E-10 59.2 6.8 55 18-75 162-227 (287)
392 COG1162 Predicted GTPases [Gen 98.0 1E-05 2.2E-10 60.3 4.9 54 19-75 166-230 (301)
393 COG1419 FlhF Flagellar GTP-bin 97.9 0.00018 4E-09 55.8 10.8 111 16-133 202-353 (407)
394 PRK00098 GTPase RsgA; Reviewed 97.9 2E-05 4.3E-10 59.6 5.5 26 17-42 164-189 (298)
395 PRK14722 flhF flagellar biosyn 97.9 0.0001 2.2E-09 57.2 9.3 117 16-132 136-295 (374)
396 cd03115 SRP The signal recogni 97.9 0.00015 3.2E-09 50.4 9.2 67 60-133 82-154 (173)
397 COG0523 Putative GTPases (G3E 97.9 0.00018 3.8E-09 54.9 9.5 141 20-170 4-193 (323)
398 PRK13695 putative NTPase; Prov 97.9 0.00063 1.4E-08 47.3 11.6 22 18-39 1-22 (174)
399 PRK11889 flhF flagellar biosyn 97.8 5.7E-05 1.2E-09 58.7 6.6 123 16-145 240-405 (436)
400 COG1618 Predicted nucleotide k 97.8 0.00025 5.5E-09 48.0 8.6 25 15-39 3-27 (179)
401 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00036 7.8E-09 43.1 8.9 68 20-96 2-70 (99)
402 PF02492 cobW: CobW/HypB/UreG, 97.8 3.2E-05 6.9E-10 54.1 4.3 108 20-134 3-157 (178)
403 PF06858 NOG1: Nucleolar GTP-b 97.8 4E-05 8.6E-10 42.5 3.5 45 83-129 12-58 (58)
404 KOG0469 Elongation factor 2 [T 97.7 0.00014 3E-09 57.7 7.1 111 16-131 18-163 (842)
405 PRK12727 flagellar biosynthesi 97.7 0.00028 6.1E-09 56.9 8.9 110 16-132 349-498 (559)
406 KOG2484 GTPase [General functi 97.7 2.9E-05 6.3E-10 59.5 3.2 56 15-71 250-307 (435)
407 PRK00771 signal recognition pa 97.7 0.00014 3.1E-09 57.6 6.9 111 15-132 93-246 (437)
408 PRK12726 flagellar biosynthesi 97.7 0.00027 5.8E-09 54.8 7.7 110 16-132 205-356 (407)
409 cd00009 AAA The AAA+ (ATPases 97.6 0.0011 2.5E-08 43.9 9.9 37 5-41 7-43 (151)
410 PRK10867 signal recognition pa 97.6 0.00027 5.7E-09 56.1 7.6 109 16-131 99-253 (433)
411 KOG2423 Nucleolar GTPase [Gene 97.6 5.1E-05 1.1E-09 58.4 3.4 93 5-100 295-390 (572)
412 KOG2485 Conserved ATP/GTP bind 97.6 8.9E-05 1.9E-09 55.3 4.4 57 15-71 141-206 (335)
413 PRK12724 flagellar biosynthesi 97.6 0.00034 7.4E-09 55.0 7.8 109 17-132 223-373 (432)
414 PRK14721 flhF flagellar biosyn 97.6 0.00014 3E-09 57.3 5.6 110 16-132 190-340 (420)
415 PRK11537 putative GTP-binding 97.6 0.00031 6.7E-09 53.6 7.3 67 61-133 91-165 (318)
416 TIGR00959 ffh signal recogniti 97.6 0.00034 7.5E-09 55.4 7.7 65 60-131 182-252 (428)
417 COG1162 Predicted GTPases [Gen 97.6 0.00032 6.9E-09 52.5 7.0 89 83-177 78-166 (301)
418 PF09547 Spore_IV_A: Stage IV 97.6 0.0015 3.2E-08 51.2 10.7 24 16-39 16-39 (492)
419 COG3523 IcmF Type VI protein s 97.6 0.00068 1.5E-08 59.5 9.7 111 20-133 128-271 (1188)
420 PRK06995 flhF flagellar biosyn 97.5 0.00012 2.6E-09 58.6 4.6 23 17-39 256-278 (484)
421 PF13207 AAA_17: AAA domain; P 97.5 8.2E-05 1.8E-09 48.4 3.1 22 19-40 1-22 (121)
422 KOG1534 Putative transcription 97.5 0.00011 2.3E-09 52.0 3.8 23 17-39 3-25 (273)
423 PRK14723 flhF flagellar biosyn 97.5 0.00023 5E-09 59.8 6.3 110 18-132 186-337 (767)
424 KOG0780 Signal recognition par 97.5 0.00031 6.6E-09 54.1 6.1 97 15-111 99-240 (483)
425 COG0541 Ffh Signal recognition 97.5 0.00042 9.1E-09 54.1 6.9 99 14-112 97-240 (451)
426 PRK06731 flhF flagellar biosyn 97.5 0.00039 8.4E-09 51.8 6.2 111 16-133 74-226 (270)
427 PRK08118 topology modulation p 97.5 0.0001 2.2E-09 51.0 2.9 21 19-39 3-23 (167)
428 TIGR02475 CobW cobalamin biosy 97.5 0.00035 7.6E-09 53.9 6.0 77 61-143 93-198 (341)
429 PRK05703 flhF flagellar biosyn 97.4 0.00093 2E-08 53.1 8.4 67 60-133 299-372 (424)
430 PF13671 AAA_33: AAA domain; P 97.4 0.00011 2.5E-09 49.1 2.9 19 20-38 2-20 (143)
431 cd03111 CpaE_like This protein 97.4 0.00086 1.9E-08 42.7 6.8 99 21-127 3-106 (106)
432 KOG1533 Predicted GTPase [Gene 97.4 0.00014 3.1E-09 52.2 3.4 69 60-132 96-177 (290)
433 COG0563 Adk Adenylate kinase a 97.4 0.00012 2.5E-09 51.2 2.9 23 18-40 1-23 (178)
434 PRK10751 molybdopterin-guanine 97.4 0.00033 7.2E-09 48.5 5.1 53 17-75 6-58 (173)
435 PRK07261 topology modulation p 97.4 0.00013 2.8E-09 50.7 2.9 21 19-39 2-22 (171)
436 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.4E-09 50.5 2.2 22 19-40 1-22 (163)
437 cd03116 MobB Molybdenum is an 97.4 0.00014 3E-09 49.8 2.6 51 19-75 3-53 (159)
438 cd02042 ParA ParA and ParB of 97.4 0.001 2.2E-08 42.0 6.3 80 20-107 2-83 (104)
439 cd02038 FleN-like FleN is a me 97.3 0.00096 2.1E-08 44.7 6.4 98 21-131 4-110 (139)
440 PRK12723 flagellar biosynthesi 97.3 0.0031 6.7E-08 49.5 9.8 109 17-132 174-326 (388)
441 cd02019 NK Nucleoside/nucleoti 97.3 0.00022 4.9E-09 41.6 2.7 21 20-40 2-22 (69)
442 PF03266 NTPase_1: NTPase; In 97.3 0.00036 7.7E-09 48.3 4.1 21 19-39 1-21 (168)
443 PF13555 AAA_29: P-loop contai 97.3 0.00026 5.6E-09 40.2 2.8 20 19-38 25-44 (62)
444 COG1126 GlnQ ABC-type polar am 97.3 0.0002 4.4E-09 50.9 2.8 26 16-41 27-52 (240)
445 PRK05480 uridine/cytidine kina 97.2 0.00031 6.8E-09 50.3 3.2 27 13-39 2-28 (209)
446 PF03215 Rad17: Rad17 cell cyc 97.2 0.0093 2E-07 48.6 11.2 89 85-177 132-229 (519)
447 PHA00729 NTP-binding motif con 97.2 0.00064 1.4E-08 49.1 4.1 34 7-40 7-40 (226)
448 PF05621 TniB: Bacterial TniB 97.1 0.0033 7.2E-08 47.2 8.0 114 5-127 49-189 (302)
449 PRK06217 hypothetical protein; 97.1 0.00038 8.2E-09 48.9 2.9 22 18-39 2-23 (183)
450 cd02036 MinD Bacterial cell di 97.1 0.013 2.8E-07 40.6 10.7 66 62-133 64-129 (179)
451 COG3640 CooC CO dehydrogenase 97.1 0.005 1.1E-07 44.5 8.3 64 61-131 134-198 (255)
452 PF00005 ABC_tran: ABC transpo 97.1 0.00048 1E-08 45.8 3.1 26 17-42 11-36 (137)
453 KOG3347 Predicted nucleotide k 97.1 0.00044 9.4E-09 46.3 2.6 26 14-39 4-29 (176)
454 PF04665 Pox_A32: Poxvirus A32 97.1 0.00054 1.2E-08 50.0 3.2 26 15-40 11-36 (241)
455 COG1116 TauB ABC-type nitrate/ 97.1 0.00045 9.8E-09 50.2 2.8 22 19-40 31-52 (248)
456 PRK14530 adenylate kinase; Pro 97.1 0.00058 1.3E-08 49.2 3.4 21 18-38 4-24 (215)
457 PF13238 AAA_18: AAA domain; P 97.1 0.00051 1.1E-08 44.9 2.8 21 20-40 1-21 (129)
458 TIGR00235 udk uridine kinase. 97.1 0.0005 1.1E-08 49.2 3.0 26 14-39 3-28 (207)
459 smart00382 AAA ATPases associa 97.1 0.00065 1.4E-08 44.7 3.3 27 17-43 2-28 (148)
460 PRK08233 hypothetical protein; 97.1 0.00059 1.3E-08 47.6 3.2 23 17-39 3-25 (182)
461 COG1136 SalX ABC-type antimicr 97.1 0.0005 1.1E-08 49.6 2.8 22 18-39 32-53 (226)
462 PRK06547 hypothetical protein; 97.0 0.0011 2.3E-08 46.1 4.3 32 9-40 7-38 (172)
463 PRK10078 ribose 1,5-bisphospho 97.0 0.00056 1.2E-08 48.1 3.0 22 19-40 4-25 (186)
464 PRK14738 gmk guanylate kinase; 97.0 0.00064 1.4E-08 48.7 3.3 26 15-40 11-36 (206)
465 PRK01889 GTPase RsgA; Reviewed 97.0 0.00088 1.9E-08 52.0 4.3 25 17-41 195-219 (356)
466 cd00071 GMPK Guanosine monopho 97.0 0.00056 1.2E-08 45.7 2.8 21 20-40 2-22 (137)
467 PF03205 MobB: Molybdopterin g 97.0 0.00062 1.4E-08 45.6 3.0 22 19-40 2-23 (140)
468 COG1763 MobB Molybdopterin-gua 97.0 0.00072 1.6E-08 46.3 3.3 51 20-76 5-55 (161)
469 TIGR02322 phosphon_PhnN phosph 97.0 0.00053 1.2E-08 47.8 2.7 22 19-40 3-24 (179)
470 PRK03839 putative kinase; Prov 97.0 0.00061 1.3E-08 47.6 3.0 21 19-39 2-22 (180)
471 TIGR00554 panK_bact pantothena 97.0 0.00079 1.7E-08 50.6 3.7 25 14-38 59-83 (290)
472 COG0552 FtsY Signal recognitio 97.0 0.0026 5.6E-08 48.3 6.3 109 15-131 137-297 (340)
473 PF00437 T2SE: Type II/IV secr 97.0 0.00045 9.8E-09 51.5 2.4 25 15-39 125-149 (270)
474 PF00004 AAA: ATPase family as 97.0 0.00062 1.3E-08 44.7 2.8 21 20-40 1-21 (132)
475 KOG4273 Uncharacterized conser 97.0 0.0032 7E-08 45.9 6.5 110 18-132 5-123 (418)
476 PRK13833 conjugal transfer pro 97.0 0.0036 7.8E-08 47.9 7.1 31 9-40 137-167 (323)
477 cd02023 UMPK Uridine monophosp 97.0 0.0006 1.3E-08 48.4 2.7 21 20-40 2-22 (198)
478 PRK05439 pantothenate kinase; 97.0 0.00088 1.9E-08 50.8 3.6 33 7-39 76-108 (311)
479 PRK09270 nucleoside triphospha 97.0 0.0012 2.7E-08 48.0 4.3 26 15-40 31-56 (229)
480 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00065 1.4E-08 47.6 2.8 21 18-38 4-24 (188)
481 PF13191 AAA_16: AAA ATPase do 96.9 0.00068 1.5E-08 47.3 2.6 27 13-39 20-46 (185)
482 PRK14531 adenylate kinase; Pro 96.9 0.00086 1.9E-08 47.1 3.1 22 18-39 3-24 (183)
483 PRK13949 shikimate kinase; Pro 96.9 0.0008 1.7E-08 46.6 2.9 21 19-39 3-23 (169)
484 COG3840 ThiQ ABC-type thiamine 96.9 0.00081 1.8E-08 46.8 2.8 23 17-39 25-47 (231)
485 TIGR03263 guanyl_kin guanylate 96.9 0.00079 1.7E-08 47.0 2.8 22 19-40 3-24 (180)
486 COG3638 ABC-type phosphate/pho 96.9 0.00085 1.8E-08 48.4 2.7 21 19-39 32-52 (258)
487 PF07728 AAA_5: AAA domain (dy 96.9 0.001 2.2E-08 44.3 3.1 21 19-39 1-21 (139)
488 cd02025 PanK Pantothenate kina 96.9 0.00076 1.7E-08 48.8 2.6 20 20-39 2-21 (220)
489 PRK14532 adenylate kinase; Pro 96.9 0.00099 2.2E-08 46.9 3.1 21 19-39 2-22 (188)
490 cd01130 VirB11-like_ATPase Typ 96.9 0.0013 2.8E-08 46.3 3.6 25 16-40 24-48 (186)
491 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00098 2.1E-08 42.4 2.7 22 17-38 15-36 (107)
492 cd01428 ADK Adenylate kinase ( 96.9 0.00084 1.8E-08 47.4 2.7 22 19-40 1-22 (194)
493 cd01131 PilT Pilus retraction 96.8 0.00095 2.1E-08 47.5 2.7 21 20-40 4-24 (198)
494 PRK14737 gmk guanylate kinase; 96.8 0.001 2.2E-08 46.8 2.8 25 17-41 4-28 (186)
495 PRK06696 uridine kinase; Valid 96.8 0.002 4.3E-08 46.7 4.4 27 13-39 18-44 (223)
496 PTZ00088 adenylate kinase 1; P 96.8 0.0012 2.7E-08 48.0 3.3 24 16-39 5-28 (229)
497 COG1936 Predicted nucleotide k 96.8 0.0011 2.3E-08 45.6 2.7 20 19-38 2-21 (180)
498 PRK00300 gmk guanylate kinase; 96.8 0.0013 2.8E-08 46.9 3.4 25 16-40 4-28 (205)
499 PRK13851 type IV secretion sys 96.8 0.0013 2.8E-08 50.7 3.5 26 15-40 160-185 (344)
500 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.3E-08 46.4 2.8 20 20-39 2-21 (183)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.2e-38 Score=223.46 Aligned_cols=180 Identities=99% Similarity=1.470 Sum_probs=160.0
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||+.++.+..+....+.+||+++|.+++|||||++++..+.+..+.||++.++..++..++.+++||+||++.++.++..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88778777776666778999999999999999999999888887889999888888888999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++++|++|+|||+++++++.....++..++......+.|+++++||+|+.+....+++...++........+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999988888877654468999999999999887778888888877665556777889999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~ 180 (189)
++|+|++++|+++.+++.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999998765
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.7e-38 Score=221.99 Aligned_cols=181 Identities=78% Similarity=1.275 Sum_probs=160.8
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||+++.++.++...++.+||+++|++|+|||||++++..+.+..+.||.+..+..+...++.+++|||||++.++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 89889999999888889999999999999999999998888887788999888888888899999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++|+|+|+++++++.....++..++......++|+++++||.|+.+....+++...++...+....+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544457899999999999776666777777776656566678889999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++|+++.+.+.+++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999888765
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-38 Score=214.20 Aligned_cols=167 Identities=19% Similarity=0.339 Sum_probs=138.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEE----EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.+.|||+++|++|+|||+|+.||.++.|. .+..|+++++... +.+.+++++|||+||++|+++..+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45699999999999999999999999998 5788999888543 346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceE-EEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY-IQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 168 (189)
+|||+++.+||.++..|+.++-+... .+.|.++||||||+.+.. .+....+..++...+.. |+|+||+++.||++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~---~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKR---VVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhhe---ecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999988866543 678999999999997542 12222222222223334 99999999999999
Q ss_pred HHHHHHHHHhhccccCc
Q 029675 169 GLDWLSNNIASKVSSLT 185 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~~ 185 (189)
.|..+...+.++.....
T Consensus 163 ~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 99999999999876443
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=4.2e-36 Score=209.75 Aligned_cols=169 Identities=87% Similarity=1.368 Sum_probs=147.3
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+.....+.+||+++|++|+|||||++++..+.+..+.||++..+..+..+.+.+++||+||++.++.++..+++++|++|
T Consensus 6 ~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 6 SKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 33344667999999999999999999998888777788999888878888899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++++++++....++..++......+.|+++++||+|+.+....+++...++........+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 99999999999999999998887654467999999999999876667778777776656566778889999999999999
Q ss_pred HHHHHHHHh
Q 029675 170 LDWLSNNIA 178 (189)
Q Consensus 170 ~~~l~~~~~ 178 (189)
|++|.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988754
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-37 Score=207.36 Aligned_cols=167 Identities=19% Similarity=0.346 Sum_probs=145.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EE--EcCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+-+.+|++++|+.++||||||+||+.+.|. ++.+|+|+++.. +. ...+.+++|||+|||+|+.+.++|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 34456799999999999999999999999998 678999988843 33 35689999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++|+|||+++..+|+....|+.....+....+..+++||||.||.+. +++..+.+..-++..+..|+++||+.|.||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999999887667899999999999887 566555555556666778999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++|..+...+....
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999888777664
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.1e-36 Score=208.45 Aligned_cols=162 Identities=75% Similarity=1.278 Sum_probs=142.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.++.+||+++|++|+|||||++++..+.+..+.||.+..+..+....+.+++|||||+++++..+..+++++|++|+|||
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 45679999999999999999999998888777889888887777888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
++++.++.+...++.+.+......+.|+++++||+|+.+....+++.+..+........+.++++||++|+|++++|++|
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999999888876444678999999999998766777887777665555556788999999999999999998
Q ss_pred HH
Q 029675 174 SN 175 (189)
Q Consensus 174 ~~ 175 (189)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
No 7
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-37 Score=206.94 Aligned_cols=165 Identities=20% Similarity=0.369 Sum_probs=140.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEE--Ec--CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--YK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+.++|||||+-||..+.|.++ .||++..+.+.. .. .++|.||||+|+++|..+-+.|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4579999999999999999999999999975 899998886544 33 489999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||+++.+||..++.|+..+..+.. +++-+.++|||+|+.+. +++..+.....++..+..|+|+||++|.||+++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999988765 77888999999999873 333333333344445667999999999999999
Q ss_pred HHHHHHHHhhcccc
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (189)
|..|.+.+.+.-..
T Consensus 159 f~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 159 FQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHhccCcccc
Confidence 99999999877543
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=4e-35 Score=201.85 Aligned_cols=158 Identities=93% Similarity=1.436 Sum_probs=138.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+||+++|.+++|||||++++..+.+..+.||++.....+....+.+.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888888788899888877888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.++.....++..++......+.|+++++||+|+.+....+++...++...+..+.+.++++||++|+|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544457899999999999766556676666666555556778889999999999999999864
No 9
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-35 Score=198.48 Aligned_cols=180 Identities=83% Similarity=1.314 Sum_probs=173.4
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||..++.++....+.++.+|+++|-.+|||||++++|-.+++.++.||++.++.++.++++.|++||.+|+++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+++.+++|||+|.++++.+.++++.+..++.+....+.|+++.+||.|+.+..+..++...+++..+....+++..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999987789999999999999999999999999999999889999999999
Q ss_pred CCCCChHHHHHHHHHHHhhc
Q 029675 161 TSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~ 180 (189)
.+|+|+.+.++++.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988654
No 10
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.9e-34 Score=200.22 Aligned_cols=173 Identities=54% Similarity=1.000 Sum_probs=159.6
Q ss_pred HHHHHHhhhc-cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhcc
Q 029675 5 FTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 83 (189)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (189)
|+.+++.... .+.++|+++|..||||||+++++..+.+....||.+.+..++...+..+.+||.+|+..++..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 4566677665 788999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc-CcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (189)
++|++|||+|.++.+.+.+....+..++......+.|+++++||+|+.+....+++...+.+..+. ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999988777889999999999999888889999888877776 6788999999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|+|+.+.++||.+++
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999875
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=7.4e-34 Score=197.41 Aligned_cols=163 Identities=61% Similarity=1.055 Sum_probs=139.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|.+++|||||++++.+..+..+.||.+..+..+.+.++.+++|||||+..++..+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988877888998888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++.....|+..++......+.|+++++||+|+.+....+++......... ....+.+++|||++|.||+++|+++.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999887654456899999999999876666666665543322 22346788999999999999999999887
Q ss_pred hhcc
Q 029675 178 ASKV 181 (189)
Q Consensus 178 ~~~~ 181 (189)
...-
T Consensus 161 ~~~~ 164 (169)
T cd04158 161 VAAG 164 (169)
T ss_pred hhcc
Confidence 6653
No 12
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=201.83 Aligned_cols=166 Identities=23% Similarity=0.402 Sum_probs=140.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
..+-+||+++|++++|||+|+.+|..+.|. +...|+++++. ++.. ..+.+++|||+||++|+.+..+|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 356699999999999999999999999998 45778887774 3444 447899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|||+++..+|+++..|+..+-.+. ....|.++||||+|+... +++..+.+...+...++.|+||||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999766665543 358999999999999763 44555555555555667899999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|-.+++.+..+...
T Consensus 165 aF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 165 AFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHhhcch
Confidence 999999999977653
No 13
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=8.1e-34 Score=197.95 Aligned_cols=166 Identities=49% Similarity=0.891 Sum_probs=141.4
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
..-+..+.++|+++|++|+|||||++++.+..+....||.+.....+..++..+.+||+||++.++..+..+++.+|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445677999999999999999999999887777788888777778788899999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++++.++.....++..++......+.|+++++||+|+.+....+++...+.........+.++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999998888888876544468999999999999776566666666655434456678999999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
|+++++
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 14
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=193.58 Aligned_cols=163 Identities=24% Similarity=0.398 Sum_probs=141.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCC-cCceEE----EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT-IGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t-~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||++||.+|+|||||+-+|..+.|....|+ +++++. .++...+++.||||+||++|+.+.++|++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 459999999999999999999999999977664 776653 344466899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|||++.+++|.++..|+.++-.-...+++..++|+||.|..++ +.+....++.+++...+-|+||||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999888877654444467888999999996543 6677788888888888999999999999999999
Q ss_pred HHHHHHHhhcc
Q 029675 171 DWLSNNIASKV 181 (189)
Q Consensus 171 ~~l~~~~~~~~ 181 (189)
+.++++|++--
T Consensus 167 eelveKIi~tp 177 (209)
T KOG0080|consen 167 EELVEKIIETP 177 (209)
T ss_pred HHHHHHHhcCc
Confidence 99999998764
No 15
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=1.3e-33 Score=197.06 Aligned_cols=170 Identities=54% Similarity=0.975 Sum_probs=145.9
Q ss_pred HHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCC
Q 029675 6 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (189)
.++.+.....+.++|+++|++|+|||||++++.++.+....||.+..+..+..++..+.+||+||++.+...+..+++.+
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 44555444456799999999999999999999998888778888888888888899999999999999999999999999
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|+++++++.....++..++......+.|+++++||+|+.+....+++.+.++........+.++++||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999989998888888887765456799999999999977656677777776555555667899999999999
Q ss_pred hHHHHHHHHH
Q 029675 166 LYEGLDWLSN 175 (189)
Q Consensus 166 i~~~~~~l~~ 175 (189)
+++++++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.7e-34 Score=204.06 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=126.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.|+++|..|+|||||+++|..+.|.. +.+|++..+. .+..+ .+.+++|||+|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999999874 5677765543 44544 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccC-cceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|++++++|+.+..|+..+. .....+.|+++|+||+|+.+... +....+...++. .++.|++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDRE---ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccc---cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 9999999999988776543 33336799999999999964321 111111111111 135789999999999999999
Q ss_pred HHHHHHhhcc
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~l~~~~~~~~ 181 (189)
++++.+.++.
T Consensus 157 ~l~~~~~~~~ 166 (202)
T cd04120 157 KLVDDILKKM 166 (202)
T ss_pred HHHHHHHHhC
Confidence 9999987764
No 17
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=184.46 Aligned_cols=181 Identities=45% Similarity=0.823 Sum_probs=167.1
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
|| .++-+...-..+++++|+++|..|+||||++++|.+.......||.++...+..++.+.+++||.+||...+..|..
T Consensus 1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 56 45666666667789999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (189)
|+..+|++|+|+|++++..+++....+...+........|++++.||.|+......+++...+.+..+ +..++..+.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999999999988877788999999999999988899999998888777 77899999999
Q ss_pred cCCCCChHHHHHHHHHHHhhccc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+.+|+++.+.++|+.+.+.++.-
T Consensus 160 ~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred ccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988653
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.3e-34 Score=200.37 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=129.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|.+|+|||||++++.++.+. .+.||.+..+. .+.. ..+.+++|||||+++++.++..+++.+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 3589999999999999999999999987 45677765443 3444 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||++++++|..+..|+..+.......+.|+++|+||+|+.+... +....+....+..++.|++|||++|.||+++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ---VTTEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999988765554433335799999999999865321 111111122223456899999999999999999
Q ss_pred HHHHHHhhcccc
Q 029675 172 WLSNNIASKVSS 183 (189)
Q Consensus 172 ~l~~~~~~~~~~ 183 (189)
++++.+.++.+.
T Consensus 158 ~l~~~~~~~~~~ 169 (172)
T cd04141 158 GLVREIRRKESM 169 (172)
T ss_pred HHHHHHHHhccC
Confidence 999998876544
No 19
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-35 Score=195.90 Aligned_cols=164 Identities=22% Similarity=0.373 Sum_probs=142.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceE----EEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+.|+|||+|+-+|....|... ..|+++++ .+++.+.+++++|||+|++.|++...+|++.+-++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3469999999999999999999999998854 56777776 345567799999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||+++.++|..+..|+.++.+... ++..+++++||+|+... +++.++.+..++++.++.|+++||++++||+|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 99999999999999999999987653 78999999999999765 456666666666666677999999999999999
Q ss_pred HHHHHHHHhhccc
Q 029675 170 LDWLSNNIASKVS 182 (189)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (189)
|......++++..
T Consensus 160 F~nta~~Iy~~~q 172 (216)
T KOG0098|consen 160 FINTAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 20
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.5e-34 Score=203.62 Aligned_cols=163 Identities=18% Similarity=0.301 Sum_probs=131.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+||+++|.+|+|||||+++|.++.+....+|++..+.......+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999988778888887766667778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------------CHhHHHhhhCCccccC-----------
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM----------------NAAEITDKLGLHSLRQ----------- 150 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~~~~~----------- 150 (189)
++|+.+..||..+.... ..+.|+++|+||+|+.+.. ..+.+....+...++.
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999988876542 3578999999999986510 0111111111111111
Q ss_pred ---cceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 151 ---RHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.|+||||++|.||+++|..+++.+....
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 1257999999999999999999999887654
No 21
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.5e-34 Score=199.99 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|..|+|||||+.+|.++.+.. +.++.+..+ ..+..+ .+.+++|||+|+++|+.++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999988764 345655544 334443 4789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+.++.... ++.|+++|+||+|+.+. ...++... .++..++.|++|||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-----~a~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-----YAERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-----HHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999998888875543 58999999999999643 22222222 1223445799999999999999
Q ss_pred HHHHHHHHHhhccc
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (189)
+|+++++.+..+..
T Consensus 158 ~F~~l~~~i~~~~~ 171 (189)
T cd04121 158 SFTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887654
No 22
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7e-33 Score=194.93 Aligned_cols=173 Identities=34% Similarity=0.597 Sum_probs=148.0
Q ss_pred hHHHHHHhh-hccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhc
Q 029675 4 TFTKLFSRL-FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82 (189)
Q Consensus 4 ~~~~~~~~~-~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (189)
+|.++++-. ..++.++|+++|.+|+|||||++++.++.+....||.+.....+...+.++.+||+||+..++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 566777743 2378899999999999999999999998877667787777777778889999999999999999999999
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc-------CcceEE
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYI 155 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 155 (189)
.++|++++|+|+++++++.....++..++......+.|+++++||+|+......+++...++..... .+.+.+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999999988888888765444689999999999998777788888877755432 246789
Q ss_pred EEcccCCCCChHHHHHHHHHH
Q 029675 156 QSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
++|||++|+|++++++++.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999875
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.8e-34 Score=201.96 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+||+++|+.++|||||+.+|..+.|. .+.||.+..+. .++...+.+++|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4589999999999999999999999986 56788775543 2333457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHh--------hhCCccccCcc-eEEEEccc
Q 029675 92 VDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITD--------KLGLHSLRQRH-WYIQSTCA 160 (189)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa 160 (189)
||++++++|+.+.. |...+... .++.|+++|+||+|+.+... .+.+.. ..+...++..+ +.|++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 44444332 25799999999999965422 111111 11111222233 57999999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.||+++|.++++.+....
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999987754
No 24
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=7.7e-33 Score=190.28 Aligned_cols=157 Identities=66% Similarity=1.132 Sum_probs=134.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|++++|||||++++..+.+..+.||.+..+..+.+.+..+++|||||++.++.++..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888877788888888778888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
++.....++...+......+.|+++++||+|+.+.....++...++.......++.++++||++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877777777766544467999999999999766556667666655544455678999999999999999999864
No 25
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.2e-34 Score=199.45 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=126.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
...+||+++|++|+|||||+++|..+.|. .+.||.+..+. .+. ...+.+++|||+|++.|..++..+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999987 45777765542 233 345789999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEcc
Q 029675 91 VVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTC 159 (189)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (189)
|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 56665554432 5799999999999864210 011222223333344453 799999
Q ss_pred cCCCCC-hHHHHHHHHHHHhh
Q 029675 160 ATSGEG-LYEGLDWLSNNIAS 179 (189)
Q Consensus 160 a~~~~~-i~~~~~~l~~~~~~ 179 (189)
|++|.| |+++|+.+++.++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999987553
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-33 Score=196.75 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=124.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++++|||||+.++..+.|. .+.||.+..+. .+.. ..+++++|||+|+++++.++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999987 46788865543 2222 45789999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCccccCcce-EEEEcccCCCC
Q 029675 94 SNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
++++++|+.+ ..|+..+.... .+.|+++||||+|+.+... ...+....+...++..++ .|+||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 46776664432 5799999999999964310 011222222222233344 58999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
||+++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 27
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-34 Score=195.29 Aligned_cols=163 Identities=20% Similarity=0.377 Sum_probs=142.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEE----EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.+.|||+++|++++|||-|+.||..++|. +..+|+++.+.+. +.+.++.+||||+||++|+.+..+|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 45699999999999999999999999988 6788999988663 346689999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|||++...+|+++..|+.++..+.. +++++++||||+||.+. +.+..+.+..+++..+..|+++||.++.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999998887765 69999999999999763 444444455555556668999999999999999
Q ss_pred HHHHHHHHhhcc
Q 029675 170 LDWLSNNIASKV 181 (189)
Q Consensus 170 ~~~l~~~~~~~~ 181 (189)
|+.++..|++..
T Consensus 168 F~~~l~~I~~~v 179 (222)
T KOG0087|consen 168 FERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.4e-33 Score=194.97 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=121.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.|. .+.||++..+. .+..++ +.+++|||+|++++..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999985 56788776554 344443 789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H--------HHhhhCCccccCcc-eEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-E--------ITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
++++++|+.+..+|...+.... ++.|+++|+||+|+.+..... . +....+....+..+ +.|++|||++|
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999764444333322 579999999999986542111 1 11111111122223 57999999999
Q ss_pred CChHHHHHHHHHHH
Q 029675 164 EGLYEGLDWLSNNI 177 (189)
Q Consensus 164 ~~i~~~~~~l~~~~ 177 (189)
.|++++|+.+++++
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.6e-33 Score=197.28 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=130.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+..+||+++|++|+|||||++++.++.+. .+.||.+..+. .++...+.+++|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999998876 45677665543 233345688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+....|+..+.......+.|+++++||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999888877665444588999999999986432 22222111 111234689999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|+++++.+.+..+.
T Consensus 158 ~~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 158 AFYELVREIRKYLKE 172 (189)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877543
No 30
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-32 Score=175.08 Aligned_cols=178 Identities=70% Similarity=1.204 Sum_probs=171.1
Q ss_pred CcchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhh
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
||..++.++.+....++++|+++|-.++||||++.+|..+......||+++++.++.+++++|.+||.+|++..+..|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+....++|+|+|..+.+..+++++.+..++......+.|+++..||.|+.+...++++...+.+.-++...+.++.+++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999887788999999999999999999999999998888889999999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 029675 161 TSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~ 178 (189)
.+|.|+.+.+.|+.+.+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999988764
No 31
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-33 Score=196.49 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|++|+|||||+++|.++.+. .+.||.+..+. .+. ...+.+++|||+|++.+..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999887 45677765542 233 34578999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEcccC
Q 029675 93 DSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCAT 161 (189)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (189)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56665554432 5799999999999864210 011222222333334454 78999999
Q ss_pred CCCC-hHHHHHHHHHHHh
Q 029675 162 SGEG-LYEGLDWLSNNIA 178 (189)
Q Consensus 162 ~~~~-i~~~~~~l~~~~~ 178 (189)
+|+| |+++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 32
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=3.3e-32 Score=187.68 Aligned_cols=157 Identities=50% Similarity=0.859 Sum_probs=130.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc-c-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+|+++|++|+|||||+++|.+..+ . ...||.+.....+...++.+++|||||++.+...+..+++.+|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 3 56788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 97 RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
+.++.....++..+..... ..+.|+++++||+|+.+....+++...+.........+.++++||++|.|++++|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9889888888877765422 24799999999999987655666666655443333456789999999999999999986
Q ss_pred H
Q 029675 175 N 175 (189)
Q Consensus 175 ~ 175 (189)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 33
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.5e-33 Score=191.83 Aligned_cols=157 Identities=21% Similarity=0.348 Sum_probs=125.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+.. +.. ..+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999998874 45566655532 333 356899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|+.+..|+..+.... .++.|+++++||+|+.+.. ..++.... +...++.++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999887765432 2578999999999986542 22222221 1223457999999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|..+++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988865
No 34
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=5e-32 Score=190.46 Aligned_cols=168 Identities=49% Similarity=0.856 Sum_probs=135.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE-----cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||++++.++.+....||.+........ ..+.+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998888777877766544433 45799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|+|+++++++.....++..+.......+.|+++++||+|+.+....+++......... ....+.++++||++|+|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999998888888888777765444457999999999999765555555554443322 223467889999999999999
Q ss_pred HHHHHHHHhhcccc
Q 029675 170 LDWLSNNIASKVSS 183 (189)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (189)
++++.+.+.+..+.
T Consensus 162 ~~~l~~~l~~~~~~ 175 (183)
T cd04152 162 LEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998766543
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.6e-33 Score=194.81 Aligned_cols=160 Identities=19% Similarity=0.397 Sum_probs=128.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE------------cCEEEEEEEcCCCCCchhchhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY------------KNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~ 80 (189)
+.+||+++|++|+|||||++++.++.+.. ..+|.+.++.. +.. ..+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999988874 46677655532 222 2378999999999999999999
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+.. ..++.... ....++.++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL-----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH-----HHHcCCeEEEE
Confidence 999999999999999999999999988877655444578999999999986532 22222111 11123468999
Q ss_pred ccCCCCChHHHHHHHHHHHhhc
Q 029675 159 CATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
||++|.|++++|+.+.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988765
No 36
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=8.5e-32 Score=190.42 Aligned_cols=164 Identities=35% Similarity=0.651 Sum_probs=140.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
..+.++|+++|++|+|||||++++.++.+..+.||.+.....+...+..+.+||+||++.++..+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999999888777788887777888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-----------cCcceEEEEcccCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (189)
+++.+++.....++..++......+.|+++++||+|+......+++...++.... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999899888888888887655567999999999999876677777776654221 12346799999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|+|++++|+++.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 37
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=181.86 Aligned_cols=163 Identities=20% Similarity=0.393 Sum_probs=133.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEE---E-cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE---Y-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~---~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+|++++|+..+|||||+.++.++.|. ....|.++++..-. . +.+++++|||+|+++++.....+++.++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4579999999999999999999999987 45678777764322 2 44799999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+||+++.++|.....|.-++ +...+.+.|+|+++||||+.++ +-+..+.+..++++.+..|+|+||+.+.||+++|
T Consensus 100 myDitNeeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred EEecCCHHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 99999999998888766554 5567789999999999999765 3333333333344445569999999999999999
Q ss_pred HHHHHHHhhccc
Q 029675 171 DWLSNNIASKVS 182 (189)
Q Consensus 171 ~~l~~~~~~~~~ 182 (189)
+.++..+-+++.
T Consensus 176 e~lv~~Ic~kms 187 (193)
T KOG0093|consen 176 ERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHhh
Confidence 999999887764
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=4.2e-32 Score=187.66 Aligned_cols=155 Identities=40% Similarity=0.682 Sum_probs=132.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
.|+++|++|+|||||+++|.++.+. .+.||.+.....+...+.++.+||+||+++++.++..+++++|++++|||.+++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 3799999999999999999988766 567888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCC------CCChHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATS------GEGLYEGL 170 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~ 170 (189)
.++.....|+..+.... +++|+++++||+|+.+....+++...+....+ +..++.+++|||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 89999988888876543 58999999999999877666666655544434 45678899999988 99999999
Q ss_pred HHHHH
Q 029675 171 DWLSN 175 (189)
Q Consensus 171 ~~l~~ 175 (189)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
No 39
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.7e-33 Score=200.41 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=127.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE-EE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
..+||+++|++|+|||||+.+|.++.|. .+.||++..+.. +. ...+.+++|||+|++.|..++..+++++|++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4689999999999999999999999887 457787665532 22 3457899999999999999999999999999999
Q ss_pred EECCCcccHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcce-EEEEccc
Q 029675 92 VDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHW-YIQSTCA 160 (189)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (189)
||++++++|... ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ .|+||||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 56666555432 5789999999999864210 012222233333344555 6899999
Q ss_pred CCCC-ChHHHHHHHHHHHhhc
Q 029675 161 TSGE-GLYEGLDWLSNNIASK 180 (189)
Q Consensus 161 ~~~~-~i~~~~~~l~~~~~~~ 180 (189)
++|+ ||+++|..+++.+.++
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988765
No 40
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=5.7e-32 Score=187.54 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=136.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
+|+++|++|+|||||++++.+.....+.||.+.....+..++..+++||+||++.++.++..+++++|++++|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999874446788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc---CcceEEEEcccCCC------CChHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR---QRHWYIQSTCATSG------EGLYEG 169 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~ 169 (189)
+++....++..+.......+.|+++++||+|+.+.....++.+.+....+. ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999988876555689999999999998877777777776655442 23578889999998 899999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.1e-32 Score=193.62 Aligned_cols=164 Identities=22% Similarity=0.332 Sum_probs=129.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+.++. .+... .+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 68999999999999999999998876 45778775543 34433 57899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 92 VDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+.+ ....+++........ ...++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----FIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----CceEEEEeCCCCCCH
Confidence 99999999999988877654321 235789999999999963 333444333222111 136899999999999
Q ss_pred HHHHHHHHHHHhhccccCc
Q 029675 167 YEGLDWLSNNIASKVSSLT 185 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~ 185 (189)
+++|+++++.+.+......
T Consensus 157 ~e~f~~l~~~l~~~~~~~~ 175 (201)
T cd04107 157 EEAMRFLVKNILANDKNLQ 175 (201)
T ss_pred HHHHHHHHHHHHHhchhhH
Confidence 9999999999988765443
No 42
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-33 Score=181.02 Aligned_cols=165 Identities=23% Similarity=0.358 Sum_probs=141.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
.-+|++++|+.|+|||+|+++|+.+++.+ ..+|+++.+.. +++ +.++++||||+||++|++...+|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 45899999999999999999999999984 57788887743 333 56899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|||+++.++|..+..|+.....-. .+++-+++++||.|+.+. +++.-..+..+.+..++-+.|+|+++|+|++|+|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 999999999999999998775533 268889999999999876 5555555555566667789999999999999999
Q ss_pred HHHHHHHhhccccC
Q 029675 171 DWLSNNIASKVSSL 184 (189)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (189)
-...+.|+.+.++.
T Consensus 164 l~c~~tIl~kIE~G 177 (214)
T KOG0086|consen 164 LKCARTILNKIESG 177 (214)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987653
No 43
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=187.78 Aligned_cols=162 Identities=15% Similarity=0.292 Sum_probs=135.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
++.-+||++.|++|+|||||+|++.+.+|. .+..|++.++.+ ++.+.+.+++|||+||++|+++...+++.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 355699999999999999999999999998 567899877754 333457899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCccccCcceEEEEc
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
++|||++++++|+.+..|..+++.+..- ..-|+|++|||.|+.+... ...+.. ...+++|+|+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~-------s~gnipyfEt 158 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK-------SKGNIPYFET 158 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH-------hcCCceeEEe
Confidence 9999999999999999999988876432 3479999999999965321 222222 2345689999
Q ss_pred ccCCCCChHHHHHHHHHHHhhccc
Q 029675 159 CATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|||.+.||+++|+.+.+.+++...
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999999887764
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.1e-32 Score=190.26 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=122.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||++++.++.+.. +.||++..+ ..+..+ .+.+++|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999988764 456654322 334443 467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+....|+..+.......+.|+++++||+|+.+.. ..++... +. +..+.+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA-LA----RQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999988887765444679999999999986532 1111111 11 1122478999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998765
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-32 Score=190.65 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=125.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|.+|+|||||++++..+.+.. ..||++..+. .+... .+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888764 4566654432 33333 567889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++.+|+.+..|+..+.......+.|+++++||+|+.+.. ...+... + .+..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-L----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 999999999999988888765555689999999999996532 2222111 1 11123478999999999999999
Q ss_pred HHHHHHHh
Q 029675 171 DWLSNNIA 178 (189)
Q Consensus 171 ~~l~~~~~ 178 (189)
.++.+++.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 46
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2e-32 Score=196.68 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=128.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+|+|++|+|||||+++|.++.|. .+.||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999999887 56788876653 2333 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhH--------HHhhhCCccccCcc-eEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAE--------ITDKLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
|++++++|+.+..+|...+... .++.|+++|+||+|+.+... ..+ +....+...++..+ +.|+||||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976666554433 26799999999999965321 111 11222222233344 3799999999
Q ss_pred CCC-hHHHHHHHHHHHhhccc
Q 029675 163 GEG-LYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~-i~~~~~~l~~~~~~~~~ 182 (189)
+++ |+++|+.++...+.+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999998877543
No 47
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=1.7e-31 Score=183.57 Aligned_cols=157 Identities=69% Similarity=1.199 Sum_probs=138.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (189)
||+++|.+|+|||||++++.+..+....+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888999888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 99 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
++.....++..+.......+.|+++++||+|+......+++.+.++........+.++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877655568999999999999877667777776665544445678999999999999999999875
No 48
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=6.3e-32 Score=189.59 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|+.|+|||||+++|.++.+.. +.||.+.++. .+..+ .+.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998874 6888887663 44444 478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|++++++|..+..|+..+..... ...| ++|+||+|+..... .+.+. .......+..++.+++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999988887765422 3566 67899999964221 11111 1111222233467899999999999999
Q ss_pred HHHHHHHHhhc
Q 029675 170 LDWLSNNIASK 180 (189)
Q Consensus 170 ~~~l~~~~~~~ 180 (189)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.2e-31 Score=185.74 Aligned_cols=156 Identities=22% Similarity=0.370 Sum_probs=126.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++..+.+. .+.+|.+..+..... ..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988766 457777766655443 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|++++++++.+..|+..+.... .+.|+++++||+|+.+.....+... ......+.++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888776543 3899999999999974332222211 11223457999999999999999999
Q ss_pred HHHHHhhc
Q 029675 173 LSNNIASK 180 (189)
Q Consensus 173 l~~~~~~~ 180 (189)
+++.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99998753
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.4e-32 Score=194.05 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=131.7
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (189)
.....+||+++|.+|+|||||++++..+.+. .+.+|.+..+..... ..+.+.+|||+|++++..++..+++++|+
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 3466799999999999999999999988887 467888776654432 34799999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
+|+|||++++++|..+..|+..+.... .+.|+++|+||+|+.+.. ..+++ . .....++.|++|||++|.|+
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T-----FHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-H-----HHHhcCCEEEEcCCCCCCCH
Confidence 999999999999999998887776542 579999999999986432 22222 1 11224467899999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++|.++++.+.+..
T Consensus 161 ~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 161 EKPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999998664
No 51
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=1.8e-31 Score=183.77 Aligned_cols=157 Identities=48% Similarity=0.914 Sum_probs=132.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEc-CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+|+++|++|+|||||+++|.++.+....||.+..+..+... ...+.+||+||++.+...+..+++.+|++++|+|..++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999999887788888777666553 57999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.++.....++..++......+.|+++++||+|+......+++...+..... ...++++++|||++|+|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 889999888888877654468999999999999766556677665543322 234567999999999999999998864
No 52
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-33 Score=181.37 Aligned_cols=161 Identities=22% Similarity=0.366 Sum_probs=137.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-|||+++|..|+|||+|+++|..+-|+ ....|+++++. +++ .+.++++||||+|+++|++...+|++.+|++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 489999999999999999999999887 67888887764 333 4568999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||++...+|..+-+|+.++..-.. .+..-|+|+||.|+.+. +++.++.+..+.+.....|.|+||++.+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999888765332 56778999999999876 66666666666666777899999999999999999
Q ss_pred HHHHHHhhcc
Q 029675 172 WLSNNIASKV 181 (189)
Q Consensus 172 ~l~~~~~~~~ 181 (189)
.+...+....
T Consensus 163 ~~a~rli~~a 172 (213)
T KOG0095|consen 163 DLACRLISEA 172 (213)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 53
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.6e-32 Score=193.62 Aligned_cols=163 Identities=23% Similarity=0.465 Sum_probs=130.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE--EEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET--VEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
.+||+++|++|+|||||+++|.++.+.. ..+|++.++.. +.. ..+.+++|||||++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988774 45777665533 333 24789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.........|+++++||+|+.+.. ..++.. .+ .+..++.|+++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999998887765443568899999999986532 122221 11 122335799999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 029675 169 GLDWLSNNIASKVSSL 184 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~ 184 (189)
+|+++++.+.++.+..
T Consensus 157 ~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 157 AFELLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999998876544
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3e-32 Score=192.74 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=125.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|.+|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+++|||||++++...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999888864 4566654432 2333 335789999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++++|..+..|+..+..... ..+.|+++|+||+|+.+... ..+... .....++.++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA-----LARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH-----HHHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877654322 25789999999999864321 222111 112233578999999999999999
Q ss_pred HHHHHHHhhccccCc
Q 029675 171 DWLSNNIASKVSSLT 185 (189)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (189)
+++++.+..+.....
T Consensus 156 ~~l~~~l~~~~~~~~ 170 (190)
T cd04144 156 YTLVRALRQQRQGGQ 170 (190)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999887765443
No 55
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=5.7e-31 Score=183.48 Aligned_cols=166 Identities=49% Similarity=0.838 Sum_probs=142.1
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
......+.++|+++|++|+|||||++++.+..+....+|.+.....+...+..+.+||+||+..+...+..+++.+|+++
T Consensus 7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred HhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 33444568999999999999999999999988777788888888788888899999999999999888999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+|+.+..++.....++............|+++++||+|+.+....+++.+.++........+.++++||++|+|++++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 99999998888888888887776544457999999999999776667777777776655555667889999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
++++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04155 167 MNWVCK 172 (173)
T ss_pred HHHHhc
Confidence 999975
No 56
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=181.55 Aligned_cols=159 Identities=20% Similarity=0.367 Sum_probs=133.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++.+++|++|+|||+|+-+|..+.|. ++..|+++++ .++++ ..++++||||+|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 67789999999999999999999888 5677887766 34443 5689999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|+++.+||.+...|++.+.... ...|-++||||+|+... .-+..+.+..++.+.++.+||+|+++++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999987764 47899999999998754 222333333344455667999999999999999999
Q ss_pred HHHHHhhcc
Q 029675 173 LSNNIASKV 181 (189)
Q Consensus 173 l~~~~~~~~ 181 (189)
|.++..+..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999887654
No 57
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.7e-32 Score=187.02 Aligned_cols=157 Identities=25% Similarity=0.410 Sum_probs=124.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+.. ..+.+++|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999877 45677776543 3333 4578999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 93 DSNDRDRVVEARDELHRMLNEDE----LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
|++++++++....|+..+..... ..+.|+++|+||+|+.+.. ..++..... ...++.++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999888877765432 2469999999999986321 222222211 112346899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029675 167 YEGLDWLSNNIAS 179 (189)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (189)
+++++++.+.+++
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
No 58
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=6.3e-32 Score=190.89 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=123.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.||+++|++|+|||||+++|.++.+.. +.||.+..+. .+.. ..+.+++|||+|++.+..++..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 489999999999999999999998874 5677665543 2223 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCccccCc-ceEEEEcccCC
Q 029675 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT---------DKLGLHSLRQR-HWYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~Sa~~ 162 (189)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+.....+.. ...+...+... .+.|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998874 55555432 2579999999999997643222111 11111112122 25799999999
Q ss_pred CCChHHHHHHHHHHHhhcc
Q 029675 163 GEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~ 181 (189)
|.|++++|.++++.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999988654
No 59
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.98 E-value=9.9e-32 Score=186.03 Aligned_cols=156 Identities=19% Similarity=0.371 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. .+.||.+..+. ++.. ....+++|||||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999986 45677765543 3332 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++++.+..|+..+... ...+.|+++++||+|+.+.. ..++..+.. ...++.++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776443 22478999999999996542 222222211 1123468999999999999999
Q ss_pred HHHHHHHhh
Q 029675 171 DWLSNNIAS 179 (189)
Q Consensus 171 ~~l~~~~~~ 179 (189)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987754
No 60
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.98 E-value=1.2e-31 Score=186.00 Aligned_cols=159 Identities=22% Similarity=0.378 Sum_probs=126.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... .+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999998774 4677766543 33333 4689999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+... ...+.|+++++||+|+.+.. ..++..... ...++.++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888776553 23578999999999997532 222222211 12234689999999999999
Q ss_pred HHHHHHHHHhhc
Q 029675 169 GLDWLSNNIASK 180 (189)
Q Consensus 169 ~~~~l~~~~~~~ 180 (189)
+|+++.+++..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 61
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.98 E-value=1.2e-31 Score=184.95 Aligned_cols=153 Identities=20% Similarity=0.352 Sum_probs=121.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. .+.+|.+.++. .+... .+.+++||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999887 45777776543 34444 368899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+.+..|+..+.... ..+.|+++++||.|+..... .++.... .+..++.|++|||++|.|++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL-----AKEYGMDFFETSACTNSNIKESF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999998887765432 24799999999999864421 1221111 11223568999999999999999
Q ss_pred HHHHHH
Q 029675 171 DWLSNN 176 (189)
Q Consensus 171 ~~l~~~ 176 (189)
.++.+.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=4.8e-32 Score=189.01 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||+.++.++.+. .+.||.+..+. .+.. ..+.+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999998886 45666654332 2333 4478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh--------hhCCccccCcc-eEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD--------KLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
|++++++|+.+...|...+.... ++.|+++|+||+|+.+.. ..+.+.. ..+....+..+ +.|++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999754444333322 579999999999996431 1111111 11111111223 4789999999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
|+|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 63
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=1.5e-31 Score=185.86 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=124.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||++++.++.+. .+.||++..+. .+.. ..+.+++|||||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999887 56788776653 2333 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
+++++++.....|+..+.......+.|+++|+||.|+.+..... ..+..+.......+..++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999888877655433457899999999986432211 00100111111223468899999999999999999
Q ss_pred HHHHhh
Q 029675 174 SNNIAS 179 (189)
Q Consensus 174 ~~~~~~ 179 (189)
++.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 988754
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=1.1e-31 Score=185.56 Aligned_cols=157 Identities=20% Similarity=0.295 Sum_probs=122.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+.. ..+|....+ ..+.. ..+.+.+|||||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999988764 345554332 22333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++++++..+..|+..+.......+.|+++++||+|+.+.. ..+....... ..+..++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777665444578999999999986532 2222221111 1224789999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
++++.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987753
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=1.2e-31 Score=184.73 Aligned_cols=156 Identities=20% Similarity=0.289 Sum_probs=122.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||+++|.++.+. ...||.+..+ ..+..+ .+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 379999999999999999999998876 4456665443 223333 357889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|++++.+|+....|+..+.......+.|+++++||+|+.+.. ...+..... ...++.++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 999999999998888877765444689999999999986532 222222211 11234689999999999999999
Q ss_pred HHHHHH
Q 029675 172 WLSNNI 177 (189)
Q Consensus 172 ~l~~~~ 177 (189)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=9.1e-32 Score=185.77 Aligned_cols=156 Identities=18% Similarity=0.273 Sum_probs=121.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCc-eEEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|.+|+|||||++++.++.+.. ..+|.+. ....+... ...+++|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998874 3455442 22233333 457889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|.....|+..+.......+.|+++++||+|+.+.. ...+. ..+. ...++.++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA----EEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999999888877765444689999999999986432 11111 1111 1123468999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
.++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.98 E-value=1.3e-31 Score=184.98 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=122.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.+||+++|++|+|||||++++.++.+.. ..+|.+..+. .... ..+.+++|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888763 4555553332 2223 3467899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|.....|+..+.......+.|+++++||+|+.... ..++.... ....++.++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999988887765444678999999999986532 12222111 11223468999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+.+++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 68
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.98 E-value=2.9e-31 Score=188.95 Aligned_cols=160 Identities=21% Similarity=0.385 Sum_probs=128.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.+..+. .+.+|.+..+ ..+... .+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999998876 4567777554 334333 3688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ...|+++++||+|+.+.. ..++..... ...++.++++||++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999998888765532 578999999999987542 222222211 12235789999999999999
Q ss_pred HHHHHHHHHhhccc
Q 029675 169 GLDWLSNNIASKVS 182 (189)
Q Consensus 169 ~~~~l~~~~~~~~~ 182 (189)
+|+++.+.+.....
T Consensus 158 lf~~l~~~~~~~~~ 171 (199)
T cd04110 158 MFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
No 69
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=2e-31 Score=188.26 Aligned_cols=162 Identities=22% Similarity=0.360 Sum_probs=128.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+.. +.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998874 6777765443 3333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.. ..+.... + ....++.++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKS-F----CDSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999877765432 2468999999999987432 2222211 1 11223468999999999999999
Q ss_pred HHHHHHHhhccccCc
Q 029675 171 DWLSNNIASKVSSLT 185 (189)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (189)
+++++.+.++....+
T Consensus 155 ~~l~~~~~~~~~~~~ 169 (188)
T cd04125 155 ILLVKLIIKRLEEQE 169 (188)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999999998765443
No 70
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=3e-31 Score=190.95 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+. .+.||.+.++.. +... .+.+++|||||++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998887 457788766533 3332 47899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.. ..++... + ....++.++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-F----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999887777655422 1357899999999996432 1122111 1 11223468899999999999
Q ss_pred HHHHHHHHHHhhc
Q 029675 168 EGLDWLSNNIASK 180 (189)
Q Consensus 168 ~~~~~l~~~~~~~ 180 (189)
++|+++++.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=1.2e-30 Score=180.90 Aligned_cols=157 Identities=38% Similarity=0.731 Sum_probs=130.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc-------ccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+|+++|++|+|||||++++.+... ....+|.+.....+.+++..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 1346788888888888899999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc--ccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+.+++++.....++..+.......+.|+++++||+|+.+....+++...+.... .....+.++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99998888888888888887765556899999999999977665555555444322 2234568999999999999999
Q ss_pred HHHHHH
Q 029675 170 LDWLSN 175 (189)
Q Consensus 170 ~~~l~~ 175 (189)
++++.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.9e-31 Score=184.59 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=119.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE---EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+. .+.||.+..+.. .....+.+.+|||||++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999886 445666544422 22345789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 94 SNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+++++++..+..|+..+.... ..++.|+++|+||+|+.+.. ..++.. ......++.|++|||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-----ACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-----HHHHHhCCcEEEeecCCCCCHHHH
Confidence 999999999988876554321 22579999999999996522 122211 111223457899999999999999
Q ss_pred HHHHHHH
Q 029675 170 LDWLSNN 176 (189)
Q Consensus 170 ~~~l~~~ 176 (189)
|+++++.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9998753
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=3.4e-31 Score=183.49 Aligned_cols=157 Identities=21% Similarity=0.388 Sum_probs=124.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+. .+.+|.+..+ ..+... .+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 379999999999999999999998876 4456666544 333333 46889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|..+..|+..+.... ..+.|+++++||+|+.... ..++..... ...++.++++||++|+|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999887765432 2578999999999986432 222222211 122457999999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|..+.+++.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.7e-31 Score=182.44 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=114.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccccc-CCcCceEEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+||+++|++|+|||||+.++..+.|.... |+.+.....+..++ +.+.+|||+|++.. .+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 58999999999999999999988877543 33333334455544 67999999999752 356789999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccC-cceEEEEcccCCCCChHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
+++++|+.+..|+..+.......+.|+++++||+|+.... .+++....+....+. ..+.|++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766544678999999999984211 111222222112222 23679999999999999999998
Q ss_pred HHH
Q 029675 174 SNN 176 (189)
Q Consensus 174 ~~~ 176 (189)
++.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 865
No 75
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=5e-31 Score=189.77 Aligned_cols=162 Identities=20% Similarity=0.349 Sum_probs=129.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+..+ .+.+++||++|++++..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999998876 56777776653 34433 468999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|||++++++|+.+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...++.++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988887765542 257999999999998653221 11222221 12346799999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|+.+++.+.+..
T Consensus 165 lf~~l~~~i~~~~ 177 (216)
T PLN03110 165 AFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 76
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=6.7e-32 Score=177.86 Aligned_cols=166 Identities=21% Similarity=0.401 Sum_probs=140.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEE----EE-EcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~----~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
...++++++|++-+|||||++.|..+++.+. .||.++++.. ++ +..+++++|||+||++|++...+|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 4678999999999999999999999999954 7899887742 22 2457999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
++|||+++.++|+....|+.+.......+. +-+.+||+|+|+... +++..+.+..+++..+..|+|||+++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999988766544344 556889999999854 5566666666666777889999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 029675 168 EGLDWLSNNIASKVSS 183 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~~ 183 (189)
+.|..+.+.+..++.+
T Consensus 163 EAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 77
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.6e-31 Score=186.35 Aligned_cols=159 Identities=18% Similarity=0.389 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||++++.++.+. ...+|++..+.. +.. ..+.+++|||||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 446676655432 333 347899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++++|+++..|+..+.... ..+.|+++++||+|+.... ..++..... ...++.|+++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999988877766532 2478999999999986432 222222211 112347899999999999999
Q ss_pred HHHHHHHHhhccc
Q 029675 170 LDWLSNNIASKVS 182 (189)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (189)
|.++.+.+.....
T Consensus 155 ~~~l~~~~~~~~~ 167 (191)
T cd04112 155 FTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1e-30 Score=180.84 Aligned_cols=155 Identities=21% Similarity=0.392 Sum_probs=123.7
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+. ...||.+..+. .+...+ ..+++||+||++.+..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999998876 45677765543 344433 6799999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++..+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..++.++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988877655432 368999999999986532 2222222221 12457899999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
++.+++.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998875
No 79
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=3.8e-30 Score=177.42 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EE--EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|.+|+|||||++++.++.+.. ..++.+.... .+ +...+.+.+|||||++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988764 3445443332 22 234568899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|++++.++.....|+..+.... ++.|+++++||+|+..... .+.. . .....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~~-~~~~-~----~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSVT-QKKF-N----FAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhHH-HHHH-H----HHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999888877765432 4789999999999853211 1111 1 11122457889999999999999999
Q ss_pred HHHHHhhc
Q 029675 173 LSNNIASK 180 (189)
Q Consensus 173 l~~~~~~~ 180 (189)
+++.+.++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99988765
No 80
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=8.7e-30 Score=174.56 Aligned_cols=157 Identities=36% Similarity=0.680 Sum_probs=133.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
.|+++|++|+|||||++++.+..+. .+.||.+..+..+..+.+.+.+||+||++.++..+..+++.+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3799999999999999999999877 567888888877877889999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
+++.....++..+.......+.|+++++||+|+.+.....++.............+.++++|+++|.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 888888888888876554467899999999999776555556555554444445578899999999999999999865
No 81
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5.4e-31 Score=181.68 Aligned_cols=154 Identities=26% Similarity=0.446 Sum_probs=125.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++++|||||+++|.++.+. .+.+|.+.+... +.. ..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999887 456777666544 333 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
++++++|..+..|+..+..... .+.|+++++||+|+.+ ....++..... +..+..|+++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988887766543 4699999999999876 22333322211 12235799999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 82
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.3e-30 Score=181.26 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=122.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE-EEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999887 44566655543 2333 2468999999999999999999999999999999
Q ss_pred ECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCccccCcce-EEEEcccCCCC
Q 029675 93 DSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAM------NAAEITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
|++++++|+.+.. |+..+... .++.|+++++||+|+.... ...+.... ....++ .++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999999875 44444322 2578999999999986532 11221111 111222 68999999999
Q ss_pred ChHHHHHHHHHHHhhcccc
Q 029675 165 GLYEGLDWLSNNIASKVSS 183 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~~~~~ 183 (189)
|++++|+.+++.+......
T Consensus 154 ~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999999887643
No 83
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=1.8e-30 Score=184.05 Aligned_cols=163 Identities=15% Similarity=0.255 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc--ccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+||+++|++|+|||||+++|.++.+.. +.+|++..+. .+..+ .+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998863 6677765542 34443 46788999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
||++++.+|+....|+..+.... .+.|+++|+||+|+..... ...+............++.++++||++|.|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888777665432 4789999999999864321 11111000011112233568899999999999999
Q ss_pred HHHHHHHhhccc
Q 029675 171 DWLSNNIASKVS 182 (189)
Q Consensus 171 ~~l~~~~~~~~~ 182 (189)
+.+.+.+.++..
T Consensus 159 ~~i~~~~~~~~~ 170 (193)
T cd04118 159 QKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHHhcc
Confidence 999999877643
No 84
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.9e-30 Score=180.09 Aligned_cols=157 Identities=19% Similarity=0.319 Sum_probs=124.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-+||+++|++|+|||||++++.++.+.. ..++.+... ..+.. ....+.+||+||++++..+...+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988764 345555443 22333 346899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||++++.+++.+..|+..+.... .++.|+++++||.|+.+.. ..++..... ...++.++++||++++|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887775543 2679999999999987432 223322221 123457899999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 85
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=9.7e-31 Score=180.39 Aligned_cols=152 Identities=18% Similarity=0.349 Sum_probs=120.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+||+++|++|+|||||++++.++.+. ...+|.+.++.. +.. ..+.+++|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999998876 446777666533 332 35789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++++.+..|+..+.... .+.|+++++||+|+.... ..++..... +..+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999988877765432 579999999999986532 222222211 11234689999999999999
Q ss_pred HHHHHHHH
Q 029675 169 GLDWLSNN 176 (189)
Q Consensus 169 ~~~~l~~~ 176 (189)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 86
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.3e-30 Score=181.31 Aligned_cols=157 Identities=21% Similarity=0.400 Sum_probs=122.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEc--CEEEEEEEcCCCCCch-hchhhhccCCCEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIR-PLWRHYFQNTQGLIF 90 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 90 (189)
.+||+++|++|+|||||++++.++.+. .+.++.+..+. .+..+ .+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999998876 45666665443 33333 4789999999999887 568888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCC---CCCh
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATS---GEGL 166 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 166 (189)
|||++++++|+.+..|+..+.......+.|+++++||+|+..... ..+....+. ....+.|++|||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999998887776654446799999999999864322 111222221 12235789999999 8999
Q ss_pred HHHHHHHHHHH
Q 029675 167 YEGLDWLSNNI 177 (189)
Q Consensus 167 ~~~~~~l~~~~ 177 (189)
+++|..+++.+
T Consensus 158 ~~~f~~l~~~~ 168 (170)
T cd04115 158 EAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 87
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.3e-30 Score=176.95 Aligned_cols=156 Identities=21% Similarity=0.362 Sum_probs=121.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce--EEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
+.+||+++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888774 34555433 34455544 688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++....... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHH
Confidence 999999999999888888776532 2579999999999986542 22222211111 0113688999999999999
Q ss_pred HHHHHHHH
Q 029675 169 GLDWLSNN 176 (189)
Q Consensus 169 ~~~~l~~~ 176 (189)
+++++.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 88
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=3.1e-30 Score=183.12 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhc--------hhhhccC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPL--------WRHYFQN 84 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (189)
+||+++|.+|+|||||+++|.++.+.. +.||++... ..+..++ +.+++|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999998874 567765443 2333444 78899999997644211 2345789
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEccc
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+|++|+|||++++++|+.+..|+..+.... ...++|+++++||+|+.... ..++...... +..++.|++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988887776543 23679999999999996532 2222221111 113457899999
Q ss_pred CCCCChHHHHHHHHHHHhhccccCcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~~ 186 (189)
++|.|++++|+.+++.+..+-+..++
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~~~~~ 182 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGRSTHP 182 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCCCccH
Confidence 99999999999999999988776544
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.7e-30 Score=179.12 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=120.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+. ...++.+..+. .+.. ....+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998876 34555554443 2333 3468899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+++++++..+..|+..+.... .++.|+++++||+|+.... ..+++..... ..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988887664332 2689999999999986432 2223222221 122579999999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998763
No 90
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2e-30 Score=180.04 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=124.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
++||+++|++|+|||||++++.++.+. .+.+|.+..+ ..+.. ..+.+++|||||++.+..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999998876 4466665443 22333 3478899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcc-eEEEEcccCCCCChHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEG 169 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 169 (189)
|++++++++....|...+.......+.|+++++||.|+.+.. ..++.... .+..+ +.++++||+++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL-----SQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHcCCceEEEeeCCCCCCHHHH
Confidence 999999999998887777654434679999999999986532 11221111 11112 46899999999999999
Q ss_pred HHHHHHHHhh
Q 029675 170 LDWLSNNIAS 179 (189)
Q Consensus 170 ~~~l~~~~~~ 179 (189)
|+++++++..
T Consensus 156 f~~i~~~~~~ 165 (168)
T cd04177 156 FIDLVRQIIC 165 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 91
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1e-30 Score=185.07 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=114.2
Q ss_pred CceEEEEcCCCCChHHHHH-hHhcCCc-----c-cccCCcCc-e-EE-----------EEEEcCEEEEEEEcCCCCCchh
Q 029675 17 EMRILMVGLDAAGKTTILY-KLKLGEI-----V-TTIPTIGF-N-VE-----------TVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
.+||+++|++|+|||||+. ++.++.+ . .+.||++. . +. .++...+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5655433 2 34677742 1 11 2334568999999999975 3
Q ss_pred chhhhccCCCEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN----------------AAEI 139 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------------~~~~ 139 (189)
+...+++++|++|+|||++++++|+.+.. |+..+... . ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45668899999999999999999999975 55544332 2 5789999999999864210 1223
Q ss_pred HhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 140 TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
....+...++..++.|+||||++|+||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3333344444556789999999999999999998864
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=185.55 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=127.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEE--EEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
...+||+++|++|+|||||+++|.+..+....++.+..+. .+..+ .+.+.+|||||++++..++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4569999999999999999999999888777777776553 33333 4688999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|||++++++|..+..+|...+.. ....+.|+++|+||+|+..... .++.... ....++.|+++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999998766554442 2224689999999999865422 1222111 11233568999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 029675 168 EGLDWLSNNIASKV 181 (189)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (189)
++|+++.+.+.+..
T Consensus 167 ~l~~~l~~~~~~~~ 180 (211)
T PLN03118 167 QCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987754
No 93
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.5e-29 Score=175.76 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=123.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
++.+||+++|.+|+|||||+++|.++.+. .+.||.+..+. .+...+ ..+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999999885 45777775542 344433 6889999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-----NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++|||++++.+|+.+..|+..+... .+.|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 9999999999999887777654322 479999999999986432 223443333321 2578999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998764
No 94
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-32 Score=180.26 Aligned_cols=164 Identities=20% Similarity=0.406 Sum_probs=139.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEEE-------------cCEEEEEEEcCCCCCchhchhhhcc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY-------------KNISFTVWDVGGQDKIRPLWRHYFQ 83 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (189)
+|.+.+|++|+|||||++++..++|... ..|.++++.+-+. ..+.+++|||+||++|+++..++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 6788999999999999999999999854 6677777644221 2368999999999999999999999
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++=+++++||+++..||-+..+|+.++..+..-.++.+++++||+|+.+. +.+.+......+...+++|+|+||.+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999988887788999999999999764 444444444444555667999999999
Q ss_pred CChHHHHHHHHHHHhhccccC
Q 029675 164 EGLYEGLDWLSNNIASKVSSL 184 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~~~~ 184 (189)
.||++..+.+++.+++++++.
T Consensus 167 ~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987643
No 95
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=7.2e-30 Score=181.11 Aligned_cols=150 Identities=23% Similarity=0.363 Sum_probs=123.3
Q ss_pred EcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 23 iG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
+|.+|+|||||++++.++.+. .+.||++..+..... ..+.+.+|||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999998887 467888776654332 457999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
++|..+..|+..+.... .+.|+++|+||+|+.... ..+.. ......++.|++|||++|+||+++|.++++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999988877776542 579999999999985432 22221 1122345689999999999999999999999
Q ss_pred Hhhc
Q 029675 177 IASK 180 (189)
Q Consensus 177 ~~~~ 180 (189)
+.+.
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 9776
No 96
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.8e-30 Score=181.14 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=117.7
Q ss_pred EEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
|+++|++|+|||||+++|.++.+.. +.++....+. .+.. ..+.+.+|||||++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999998874 4555544332 2333 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHH--------HhhhCCccccCcc-eEEEEcccCCCC
Q 029675 96 DRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEI--------TDKLGLHSLRQRH-WYIQSTCATSGE 164 (189)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (189)
++++|+.+.. |+..+... . ++.|+++++||+|+..... .+++ ....+....+..+ ..+++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF-C-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh-C-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999875 55544432 2 5899999999999865311 1111 1111111112223 378999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 029675 165 GLYEGLDWLSNNIAS 179 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~ 179 (189)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998764
No 97
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=3.5e-30 Score=177.86 Aligned_cols=157 Identities=21% Similarity=0.439 Sum_probs=124.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.+..+. ...++.+..+. .+...+ +.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988876 34566665443 344433 68999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+.++++++.+..|+..+..... ++.|+++++||+|+.+.. ..+...... ...++.++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998887777655432 589999999999987532 223332221 1233568999999999999999
Q ss_pred HHHHHHHhhc
Q 029675 171 DWLSNNIASK 180 (189)
Q Consensus 171 ~~l~~~~~~~ 180 (189)
+.+.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988654
No 98
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.5e-29 Score=184.86 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=125.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCc-eEEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|.+|+|||||+++|.++.+. .+.+|++. ....+... .+.+++|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998887 45666652 22334443 4788999999999999988888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNED--------ELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
++++++|+.+..|+..+.... ...+.|+++++||+|+.. ....+++....+.. ..+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCC
Confidence 999999999988888776431 225799999999999964 33445554443321 2457899999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++|+++...+..
T Consensus 157 ~gI~elf~~L~~~~~~ 172 (247)
T cd04143 157 SNLDEMFRALFSLAKL 172 (247)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999986643
No 99
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.3e-29 Score=176.13 Aligned_cols=159 Identities=14% Similarity=0.314 Sum_probs=123.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ..+.+++||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 346899999999999999999999988774 4667665542 3333 4568899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+|||+++++++..+..|...+..... ..+.|+++++||+|+... ...+++.+..... ..+.++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEECCCCCC
Confidence 99999999999999888776655321 246899999999998632 2333333222111 113688999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++|+.+++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 100
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=3.4e-30 Score=177.82 Aligned_cols=155 Identities=20% Similarity=0.398 Sum_probs=124.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999875 667766443 23333 457899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
||+++++++.....|+..+..... ...|+++++||+|+.+.. ..++....... .++.++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999988887766543 679999999999987321 23333222111 1246899999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
++++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
No 101
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=6e-30 Score=165.74 Aligned_cols=166 Identities=34% Similarity=0.668 Sum_probs=155.9
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.-..+..+.++|-.++|||||+|....+.+.+ -.||.+++...++.+.+.+.+||.||+.+|+.+|..|++.+++++||
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 34567999999999999999999999888775 48999999999999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+|+++++.++..+..+..++....+.++|++|.|||.|+.+......+...+++..+..+.+.++.+|+++..||+-+.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
|++++-.
T Consensus 176 Wli~hsk 182 (186)
T KOG0075|consen 176 WLIEHSK 182 (186)
T ss_pred HHHHHhh
Confidence 9988754
No 102
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=173.25 Aligned_cols=168 Identities=20% Similarity=0.307 Sum_probs=134.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccccc-CCcCceE--EE--EEEcCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~-~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
+.-.||++++|...+|||||+=|++.++|.... .|..-.+ .. +......++||||+||++|..+-+.|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345799999999999999999999999987543 2222211 22 333557899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|||+++.++|+....|..++..-.. ..+-+++|+||.|+-.+ +.+..+.+...++.-+..|+++||+++.||.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999888766443 46889999999998654 44444444444445566799999999999999
Q ss_pred HHHHHHHHHhhccccCc
Q 029675 169 GLDWLSNNIASKVSSLT 185 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~~~ 185 (189)
+|+.+...+.++..+.+
T Consensus 166 lFe~Lt~~MiE~~s~~q 182 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQRQ 182 (218)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999988874433
No 103
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=6.9e-30 Score=175.96 Aligned_cols=153 Identities=20% Similarity=0.380 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++++|||||++++.+..+. ...++.+.++ ..+..++ ..+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 4466665544 3344433 67999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++|+.+..|+..+..... .+.|+++++||+|+.+.. ..++...... ..++.++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765532 369999999999994322 2222222211 223578999999999999999
Q ss_pred HHHHHH
Q 029675 171 DWLSNN 176 (189)
Q Consensus 171 ~~l~~~ 176 (189)
+++.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 104
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.2e-30 Score=178.08 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=118.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.+.. +.++....+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999998864 455554322 233343 4568899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCccccCcc-eEEEEcccCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE---------ITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
+.++++|+.....|...+... .++.|+++++||+|+.+...... +....+....+..+ ..|++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875555444433 36899999999999865321111 11111111111222 36899999999
Q ss_pred CChHHHHHHHHHHHh
Q 029675 164 EGLYEGLDWLSNNIA 178 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~ 178 (189)
.|++++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=183.35 Aligned_cols=160 Identities=19% Similarity=0.320 Sum_probs=126.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.+..+.. ..+|++..+. .+.. ..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988763 4667665543 2333 34678999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|+.+..|+..+.... ..+.|+++++||+|+.+.. ..++..... +..++.++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665432 2579999999999986532 222222221 12335799999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|.++++.+.++.
T Consensus 159 ~f~~l~~~~~~~~ 171 (210)
T PLN03108 159 AFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 106
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=6.7e-30 Score=178.17 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=113.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+|++++|++|+|||||+.++.++.+... .+|....+ ..+..+ .+.+++|||||++.+...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 6899999999999999999998887754 44442211 223333 4688999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcc-eEEEEcccCC
Q 029675 94 SNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRH-WYIQSTCATS 162 (189)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (189)
++++++|+.+.. |+..+... .++.|+++++||+|+..... .+.+.........+..+ ..|+++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999998864 55444432 24799999999999864311 01111111111122223 3799999999
Q ss_pred CCChHHHHHHHH
Q 029675 163 GEGLYEGLDWLS 174 (189)
Q Consensus 163 ~~~i~~~~~~l~ 174 (189)
|.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
No 107
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=9.6e-30 Score=175.78 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC--Ccc-cccCCcCceEE--EEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG--EIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+||+++|++|+|||||++++.++ .+. .+.+|.+.++. .+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 454 55677765543 2322 3479999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ....+. ...++.++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888877765542 4699999999999865432111 111111 11234688999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
No 108
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.8e-29 Score=182.21 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=118.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEE--cCEEEEEEEcCCCCCchhchhhhcc-CCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 90 (189)
+||+++|++|+|||||+++|.++.+. .+.++.+ ....++.. ....+.+|||||++ ......+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888874 4455553 33334444 55789999999998 333455666 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|||++++++|..+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....++.|+++||+++.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence 999999999999988887776654446799999999999865421 12111 11 122345689999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029675 169 GLDWLSNNIASKV 181 (189)
Q Consensus 169 ~~~~l~~~~~~~~ 181 (189)
+|+++++++..+.
T Consensus 154 l~~~l~~~~~~~~ 166 (221)
T cd04148 154 LLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987443
No 109
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.3e-29 Score=173.70 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEE---EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET---VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||++++.++.+.. ..++....+.. ++...+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988763 34554433322 22245789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+.++.++.....|+..+.......+.|+++++||+|+... ....+..... ...+++++++||++|+|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888887654468999999999998752 2222211111 11234689999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
.+.+++.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 110
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=7.6e-29 Score=172.47 Aligned_cols=161 Identities=15% Similarity=0.260 Sum_probs=123.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+.. ..+|.+..+. .+.. ..+.+++||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988763 3455554442 3333 3467889999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDE---LRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|+++++++.....|...+..... ..+.|+++++||+|+.++ ...++........ ..+.++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CCceEEEEECCCCCCHH
Confidence 99999998888777665544322 247999999999999732 2233332222111 12478999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 029675 168 EGLDWLSNNIASKVS 182 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (189)
++++++.+.+.++..
T Consensus 157 ~l~~~i~~~~~~~~~ 171 (172)
T cd01862 157 QAFETIARKALEQEK 171 (172)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999888743
No 111
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.5e-29 Score=173.17 Aligned_cols=154 Identities=25% Similarity=0.431 Sum_probs=122.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE--EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.+..+.. ..++.+..+. .+.. ..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 689999999999999999999988763 5666665543 2333 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|+++++++.....|+..+.......+.|+++++||+|+.... ..++..... ...++.++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988877766655444689999999999997332 333322221 12345799999999999999999
Q ss_pred HHHHH
Q 029675 172 WLSNN 176 (189)
Q Consensus 172 ~l~~~ 176 (189)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98875
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.9e-29 Score=173.85 Aligned_cols=158 Identities=14% Similarity=0.203 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceE-E--EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+||+++|++|+|||||+++|.++.+....+++...+ . .+....+.+.+|||||++.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999998875444332222 1 2223567899999999998888888888999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++++++.+..+|...+.... .+.|+++++||+|+.+.... +++..... . +. ....+++|||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN-E-FR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH-H-Hh-cccEEEEeccccccCHHHHH
Confidence 999999998765555554333 47999999999999765432 11111100 0 00 01268899999999999999
Q ss_pred HHHHHHHhh
Q 029675 171 DWLSNNIAS 179 (189)
Q Consensus 171 ~~l~~~~~~ 179 (189)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988765
No 113
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=9.3e-30 Score=176.11 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=114.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE-EEEEE--cCEEEEEEEcCCCCC-chhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||++++.++.+. .+.++....+ ..+.. ..+.+++||+||++. +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988876 3455553222 22333 446789999999985 34556778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCC-CChHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSG-EGLYEG 169 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~ 169 (189)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.. ..++.... ....+..|+++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999887766554321 3579999999999985432 22222111 1112346899999999 599999
Q ss_pred HHHHHHHHh
Q 029675 170 LDWLSNNIA 178 (189)
Q Consensus 170 ~~~l~~~~~ 178 (189)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 114
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=1.9e-28 Score=171.03 Aligned_cols=160 Identities=19% Similarity=0.315 Sum_probs=117.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.||+++|++|+|||||+++|.++.+.. +.||.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999998874 566665443 23433 3467899999999999998888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhh--------CCccccC-cceEEEEcccCC
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKL--------GLHSLRQ-RHWYIQSTCATS 162 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~Sa~~ 162 (189)
|++++++|+.....|...+... ..+.|+++++||+|+.+.... +++.... +...... ....+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988865444444332 257899999999998653211 1111100 0000111 123789999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 115
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=1.1e-28 Score=169.98 Aligned_cols=154 Identities=21% Similarity=0.354 Sum_probs=119.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE--EEEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++|+|||||++++.++.+.. ..++..... ..+.. ....+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988763 344443333 23333 3457999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|++++++++....|+..+..... .+.|+++++||+|+.... ..+++..... ..++.++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998887776655433 378999999999987432 2233322221 123467899999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
No 116
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-29 Score=160.60 Aligned_cols=180 Identities=56% Similarity=0.943 Sum_probs=165.4
Q ss_pred CcchHHHHHHhhhcc-CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchh
Q 029675 1 MGLTFTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (189)
||.-++.++..+... ++.+|+++|-.|+|||++..++.-++..++.||++++..++.+++.++++||..|+-..+..|+
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 455566667776666 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.|+.+.|++|||+|.++.+.+.-....+..++.+..+....++++.||.|........++...+++..++.+.+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999998888888899999988888899999999999988888899999999888888889999999
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
|.+|+|++++++|+.+.+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988754
No 117
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.5e-31 Score=167.55 Aligned_cols=157 Identities=18% Similarity=0.401 Sum_probs=128.8
Q ss_pred EEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 21 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
+++|++++|||+|+-|+-.+.|. ...+|.++++.. +....+++++|||+||++|++...+|++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 46899999999999999888876 346788877643 444568999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+..||++.+.|+.++..- ......+.+++||||+.++ ++.+.+.+..++ +|+|+||++|.|++..
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHH
Confidence 9999999999998877542 2246788999999999654 234445555544 6999999999999999
Q ss_pred HHHHHHHHhhccccCcc
Q 029675 170 LDWLSNNIASKVSSLTS 186 (189)
Q Consensus 170 ~~~l~~~~~~~~~~~~~ 186 (189)
|-.+.+.+.+..-..+|
T Consensus 152 f~~ia~~l~k~~~~~~~ 168 (192)
T KOG0083|consen 152 FLAIAEELKKLKMGAPP 168 (192)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 99999999887644443
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.9e-28 Score=172.21 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=121.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc-cCCcC-ceEEEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|++|+|||||+++|.++.+... .+|.. .....+...+ +.+++||+||+..+..++..+++.+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887743 44443 3333444444 7899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++++++....|+..+.......+.|+++++||+|+.+.. ......+.... ..+..++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHH
Confidence 9999999998888877765544679999999999986531 12222211111 1224688999999999999999
Q ss_pred HHHHHHh
Q 029675 172 WLSNNIA 178 (189)
Q Consensus 172 ~l~~~~~ 178 (189)
++++.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998775
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.1e-28 Score=171.49 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=116.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
+||+++|++|+|||||+++|.++.+. ...++...... ......+.+++||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999874 44454432221 222345789999999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCccccCcce-EEEEcccCCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRQRHW-YIQSTCATSGE 164 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (189)
++++.+|......|...+.... .+.|+++++||+|+.+...... +............+. .|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999888766555544432 4799999999999876542211 111111112222223 79999999999
Q ss_pred ChHHHHHHHHH
Q 029675 165 GLYEGLDWLSN 175 (189)
Q Consensus 165 ~i~~~~~~l~~ 175 (189)
|++++++++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.9e-28 Score=171.83 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=128.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce-EEEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.||+++|++|+|||||++++.+..+.. ..||.... ...+... .+.+++||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999888764 55655433 3334443 3568999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+++..+++.+..++..+.......+.|+++++||+|+.... ..++..... ...++.++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999998888876544678999999999986432 222222111 11224688999999999999999
Q ss_pred HHHHHHhhccccCc
Q 029675 172 WLSNNIASKVSSLT 185 (189)
Q Consensus 172 ~l~~~~~~~~~~~~ 185 (189)
++.+.+.......+
T Consensus 157 ~l~~~~~~~~~~~~ 170 (180)
T cd04137 157 LLIEEIEKVENPLD 170 (180)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999887654443
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=6.8e-28 Score=170.05 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=123.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEE-EEEE--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+.|++++|++|+|||||++++..+.+.. ..+|....+. .+.. ....+.+||++|++.+.......++++|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3689999999999999999998777653 3455443332 2333 3467899999999988887777889999999999
Q ss_pred ECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-H------hHHHhhhCCccccCcc-eEEEEcccCCC
Q 029675 93 DSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN-A------AEITDKLGLHSLRQRH-WYIQSTCATSG 163 (189)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (189)
|++++++|..+.. |+..+.... ++.|+++|+||+|+.+... . ..+.........+..+ +.|++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999875 444443322 5799999999999854211 0 0000001111111222 36899999999
Q ss_pred CChHHHHHHHHHHHhhccccCccCC
Q 029675 164 EGLYEGLDWLSNNIASKVSSLTSSE 188 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~~~~~~~~ 188 (189)
.|++++|+.+.+++..-.++.+.+.
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~~~~~~ 183 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKSEPGAG 183 (187)
T ss_pred CCHHHHHHHHHHHHhcccCcccccC
Confidence 9999999999999988888776654
No 122
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=173.29 Aligned_cols=161 Identities=22% Similarity=0.312 Sum_probs=135.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE---EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.+|++++|.+|+|||+|+.+|+++.|. .+.||++..+. .++.+...+.|+||+|++.+..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999999999999998 56888875442 2334557889999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
|+++++.||+.+..++.++.........|+++||||+|+.+. ..+..+.+...+....+.|+|+||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999966555567899999999999864 33333333333555666799999999999999999
Q ss_pred HHHHHHhh
Q 029675 172 WLSNNIAS 179 (189)
Q Consensus 172 ~l~~~~~~ 179 (189)
.+...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998887
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.1e-28 Score=167.20 Aligned_cols=157 Identities=20% Similarity=0.354 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..++|+++|++|+|||||++++.++.+. ...+|.+... ..+...+ +.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999977765 3456655333 3344444 678999999999999998999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
|||+.+++++.....|+..+... ...+.|+++++||+|+.+..+. .+....+. ......++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999988998887776554332 2246899999999998654321 12222221 112246889999999999999
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
|+.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
No 124
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=158.11 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=135.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE----EEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+.-||-+++|+-|+|||+|+++|...+|. ..++|+++.+. ++....+++++|||+|+++|+....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 34589999999999999999999999988 56778887763 35557789999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|||++.+.++..+..|+....... .++..+++++||.|+... ...++. ..+++.+++.|.++|+++|++++
T Consensus 89 mvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeea-----k~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEA-----KEFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHH-----HHHHhhcCeEEEEecccccCcHH
Confidence 9999999999999888887765543 378889999999998543 233333 33444566789999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 029675 168 EGLDWLSNNIASKVS 182 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~ 182 (189)
+.|-...+++++...
T Consensus 163 dafle~akkiyqniq 177 (215)
T KOG0097|consen 163 DAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988764
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=2.7e-27 Score=162.03 Aligned_cols=151 Identities=23% Similarity=0.423 Sum_probs=121.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-cCCcCceEEEEE--E--cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
+||+++|++++|||||++++.+..+... .+|.+..+.... . ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988754 667666554433 3 3478999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP--NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+++++++.....|+..+..... ...|+++++||+|+. .....+++..... ..++.++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99998899998887777666432 479999999999995 2223333333222 134579999999999999999
Q ss_pred HHHH
Q 029675 171 DWLS 174 (189)
Q Consensus 171 ~~l~ 174 (189)
+++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 126
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=8.4e-28 Score=165.16 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=120.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceE-EEEEEc--CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|++|+|||||++++.+..+.. ..++.+..+ ..+... .+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887653 455544222 233333 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
++++++.....++..+.........|+++++||+|+.... ..+++..... ..++.++++|++++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999988888776544589999999999987532 2222222211 11246899999999999999999
Q ss_pred HHHHH
Q 029675 173 LSNNI 177 (189)
Q Consensus 173 l~~~~ 177 (189)
+.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=6e-27 Score=168.65 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=130.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+...+|++++|++|+|||||+++++.+.+. .+.+|.+..+..... +.+.+.+|||+|++.+...+..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34566799999999999999999999888776 567888877755443 4589999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++++|||+++..+|..+..|+..+.... .+.|+++++||+|+.+.....+... .....++.++++|+++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988877775432 5789999999999864322111111 11223457899999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 029675 167 YEGLDWLSNNIASKVS 182 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~~ 182 (189)
+++|.++++.+..+..
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999887643
No 128
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.7e-28 Score=159.74 Aligned_cols=179 Identities=37% Similarity=0.707 Sum_probs=156.6
Q ss_pred cchHHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc--------ccccCCcCceEEEEEEcCEEEEEEEcCCCCC
Q 029675 2 GLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--------VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (189)
=+..+.+.+--.....+.++++|..++|||||+...-.... ..-.||.+.+..++......+.+||..|++.
T Consensus 2 ~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 2 FTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence 34556677767778889999999999999999987643321 2346799999999999999999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-ccccCcc
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRQRH 152 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~ 152 (189)
.+++|..|+..+|++|+++|+++++.|+.....+.....+....+.|+++.+||.|+.+..+..++...++. .....+.
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 999999999999999999999999999999999999988888889999999999999999988898888773 3334567
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
+.|+.+||.+|+||++.+.|+++.+.++
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999887
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=2.5e-26 Score=162.99 Aligned_cols=116 Identities=25% Similarity=0.434 Sum_probs=97.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE--EEEE-------cCEEEEEEEcCCCCCchhchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (189)
+||+++|++++|||||++++.++.+. .+.+|++..+. .+.. ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999887 45678775442 2332 34789999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCC
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNED------------------ELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~ 133 (189)
+|+|||++++++|+.+..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988876531 1246899999999999654
No 130
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=2.7e-27 Score=163.67 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=131.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE---EEEE-EcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV---ETVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~---~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
...+|++++|+..+|||+|+..+..+.|+ .+.||.-.++ ..+. ...+++.+|||+||++|.+.++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999988 5677765444 2342 55689999999999999999989999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHh--------hhCCccccCcc-eEEEEcc
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITD--------KLGLHSLRQRH-WYIQSTC 159 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~--------~~~~~~~~~~~-~~~~~~S 159 (189)
+||++.++++|.+....|..-+.+.. ++.|+++||+|.|+++.. ..+++.. ..+...++..+ ..|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998877776666555 899999999999998542 1112211 11111122233 5799999
Q ss_pred cCCCCChHHHHHHHHHHHhhcc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~ 181 (189)
|++.+|++++|+..+..++...
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhccc
Confidence 9999999999999999987754
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.8e-25 Score=154.96 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=107.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEEEEEcCEEEEEEEcCCCCCch---------hchhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~d 86 (189)
+|+++|++|+|||||+++|.+..+... ..|.+.....+..++..+++|||||+.... .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 789999999999999999999876421 235556555666677899999999974211 11111123368
Q ss_pred EEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 87 GLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 87 ~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
++++|+|+++..++ .....|+..+.... .+.|+++++||+|+.+.....+.... .....+.+++|||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEecccC
Confidence 99999999876653 45455555543321 47999999999999765333321111 12234578999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
|++++++++.+.++
T Consensus 155 gi~~l~~~l~~~~~ 168 (168)
T cd01897 155 GVDEVKNKACELLL 168 (168)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999988763
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.8e-25 Score=154.27 Aligned_cols=155 Identities=26% Similarity=0.247 Sum_probs=107.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCC----Cchhchhhh---ccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQD----KIRPLWRHY---FQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~----~~~~~~~~~---~~~~d~ 87 (189)
+|+++|.+|+|||||+++|.+.... . ..+|.......+...+. .+.+|||||.. ..+.+...+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876542 1 12344444444555555 99999999963 222233333 346999
Q ss_pred EEEEEECCCc-ccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 88 LIFVVDSNDR-DRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+++|+|++++ ++++....|...+.... ...++|+++|+||+|+.+.....+........ .....++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999988 78887776666554332 12468999999999987654433322222111 0234688999999999
Q ss_pred hHHHHHHHHHH
Q 029675 166 LYEGLDWLSNN 176 (189)
Q Consensus 166 i~~~~~~l~~~ 176 (189)
++++++++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 133
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=3.5e-25 Score=142.85 Aligned_cols=165 Identities=47% Similarity=0.793 Sum_probs=152.0
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcC-EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+++++||++.|-.++|||||+..|.+.......||.+++...+...+ ..+++||.+|+...+..|..|+.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 448899999999999999999999999888888999999999999866 8999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
+|.++...|+++-+.+.+++...+....|+.+..||.|+......+++.....+..++.+-+++.+||+.+++|+..-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999999999999988888999999999999987777888888888888888889999999999999999999
Q ss_pred HHHHHH
Q 029675 172 WLSNNI 177 (189)
Q Consensus 172 ~l~~~~ 177 (189)
++....
T Consensus 173 wv~sn~ 178 (185)
T KOG0074|consen 173 WVQSNP 178 (185)
T ss_pred hhhcCC
Confidence 887643
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=6.8e-25 Score=153.59 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=106.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cc-cccC------CcCceE----EEE-----EEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IV-TTIP------TIGFNV----ETV-----EYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~g~~~~~ 75 (189)
+|+++|++++|||||+++|.+.. +. .+.+ +.+..+ ..+ +..++.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 11 1111 112222 112 2346789999999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccccCcc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQRH 152 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (189)
..+..+++.+|++|+|+|+++..++.....+.. ... .++|+++++||+|+.+.... +++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 999999999999999999988666555444432 222 46889999999998653221 2333333221 1
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHH
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
..++++||++|+|++++++++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2478999999999999999998765
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=7.6e-25 Score=151.06 Aligned_cols=151 Identities=23% Similarity=0.171 Sum_probs=102.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---ccc-c--cCCcCceEEEEEEc-CEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---IVT-T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---~~~-~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.|+++|++|+|||||+++|.+.. +.. . ..|.+..+..+... +..+++|||||++++......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 221 1 23444555555555 77999999999998887777788899999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+|+++... ......+. .+... ...|+++++||+|+.+... .+++.+.+..... ....++++||+++.|++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHH
Confidence 99976211 11112121 11111 2348999999999975421 1223333222111 23578999999999999
Q ss_pred HHHHHHHH
Q 029675 168 EGLDWLSN 175 (189)
Q Consensus 168 ~~~~~l~~ 175 (189)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998754
No 136
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=9.4e-25 Score=162.31 Aligned_cols=124 Identities=21% Similarity=0.379 Sum_probs=104.0
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEE---------------cCEEEEEEEcCCC
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---------------KNISFTVWDVGGQ 71 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~g~ 71 (189)
+..++...+||+++|+.|+|||||+++|.++.+. .+.+|++..+ ..+.+ ..+.++||||+|+
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 3567788899999999999999999999999887 4577887655 23333 2467999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE-----------LRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~ 133 (189)
+.|+.++..+++++|++|+|||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999998888765421 135899999999998643
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=2.1e-24 Score=154.21 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=107.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCCCc---------hhchhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI---------RPLWRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~---------~~~~~~~ 81 (189)
+..++|+++|++|+|||||++++.+..+. . ..+|.+.....+...+. .+.+|||||.... .... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 44589999999999999999999988643 1 23455555555555443 8999999997321 1111 23
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
+..+|++++|+|++++.++.....+. ..+......+.|+++|+||+|+.+..... . ........++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcC
Confidence 56899999999999887776654433 33333233578999999999997653222 1 112233468899999
Q ss_pred CCCChHHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNNI 177 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~ 177 (189)
++.|++++++++.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999988754
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=3.3e-24 Score=148.51 Aligned_cols=154 Identities=22% Similarity=0.206 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEEEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.|+++|.+|+|||||+++|.++.+... ..|.......+... +..+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876643 22333333444443 678999999999999988888899999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---hCCcc--ccCcceEEEEcccCCCCChH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK---LGLHS--LRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 167 (189)
|+++....+. ...+.. +.. .+.|+++++||+|+.... .+.+... ..... .....+.++++|+++|+|++
T Consensus 82 d~~~~~~~~~-~~~~~~-~~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKL-AKA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHH-HHH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987432221 111222 222 468999999999987432 1222211 11111 11234678999999999999
Q ss_pred HHHHHHHHHHh
Q 029675 168 EGLDWLSNNIA 178 (189)
Q Consensus 168 ~~~~~l~~~~~ 178 (189)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1.1e-23 Score=143.97 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=114.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--EEEcC--EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.+||+++|.+|+|||||++++.+..+. ...+++...+.. +..++ +.+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999998855 344555555443 55566 7899999999999999999999999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 92 VDSNDR-DRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+... .++.... .+...+..... .+.|+++++||+|+......+.....+... ....++++||++|.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence 998866 6666655 34433333222 378999999999997654333333333322 1235889999999999999
Q ss_pred HHHHH
Q 029675 170 LDWLS 174 (189)
Q Consensus 170 ~~~l~ 174 (189)
++++.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.4e-23 Score=166.74 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCC----------Cchhch-hh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLW-RH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~~ 80 (189)
..++|+++|.+|+|||||+|+|++..+. +..+ |.+.....+...+..+.+|||||.. .+..+. ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753 3333 3333344566677889999999953 222221 23
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++++|+|+++..+++... ++..+.. .+.|+++|+||+|+.+......+.............++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999887776653 3333332 57899999999999754322222222211111112246789999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++|+.+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 365 KTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999988765443
No 141
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=1.7e-23 Score=159.53 Aligned_cols=159 Identities=15% Similarity=0.205 Sum_probs=111.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc----cCCcCceEEEEEEcCEEEEEEEcCCCCC-chhch-------hhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK-IRPLW-------RHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~ 82 (189)
.+.++|+++|.+|+|||||+|+|.+..+... .+|.+.....+..++..+.+|||||... +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999887532 2344444455667788999999999843 22221 1246
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++....... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455554444444443 34677889999998653 233343333211 1124688999999
Q ss_pred CCChHHHHHHHHHHHhhccc
Q 029675 163 GEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~ 182 (189)
|.|++++++++.+.+.+.-.
T Consensus 201 g~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCC
Confidence 99999999999988766543
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=154.81 Aligned_cols=161 Identities=23% Similarity=0.307 Sum_probs=104.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEEcCEEEEEEEcCC-----------CCCchhchhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG-----------QDKIRPLWRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 81 (189)
+...++|+++|.+|+|||||+++|.+..+.. ..|+.......+... .+.+||||| ++.++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999887652 344444433334333 699999999 45555555555
Q ss_pred cc----CCCEEEEEEECCCcccH----H-----HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCc
Q 029675 82 FQ----NTQGLIFVVDSNDRDRV----V-----EARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLH 146 (189)
Q Consensus 82 ~~----~~d~~i~v~d~~~~~s~----~-----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~ 146 (189)
+. .++++++|+|......+ . .....+...+.. .++|+++++||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 43 46788888887643211 0 011122223222 478999999999986543 233444444431
Q ss_pred -cccCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 147 -SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 147 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
.....+..++++||++| |++++++++.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 01111235789999999 9999999999886543
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.1e-24 Score=145.72 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=92.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC-----CchhchhhhccCCCEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d 93 (189)
||+++|++|+|||||+++|.++.+. ..+|.+.. +.. .+|||||+. .+..+.. .++++|++++|||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999988753 33444332 222 789999973 3333333 4789999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
++++.++... . |.... ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 9998877542 2 32221 24899999999986532 222222211111 1125889999999999999988
Q ss_pred HH
Q 029675 173 LS 174 (189)
Q Consensus 173 l~ 174 (189)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 144
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.4e-23 Score=159.09 Aligned_cols=159 Identities=23% Similarity=0.212 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEE-cCEEEEEEEcCCCCC-------chhchhhhccCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (189)
-.|+++|.||||||||++++.+.... .+ ..|.......+.+ +..++.+||+||... ....+...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 46899999999999999999876533 22 3455666666666 456899999999632 2222334556799
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCccccCcceEEEEcccCCCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
++++|+|+++.++++....|...+.... .+.++|+++|+||+|+.+..... +..... ....++.++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998778888777766554321 22478999999999987543221 111111 11223468899999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 029675 165 GLYEGLDWLSNNIASK 180 (189)
Q Consensus 165 ~i~~~~~~l~~~~~~~ 180 (189)
|++++++++.+.+.+.
T Consensus 315 GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 315 GLDELLRALWELLEEA 330 (335)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887653
No 145
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=151.57 Aligned_cols=167 Identities=28% Similarity=0.382 Sum_probs=123.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCceEEEEEE--c--CEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--K--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+||+++|++|+|||||+++|.++.+.. +.+|.+..+..... . .+.+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999884 56666655544332 2 4679999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhh----------hCCcccc-CcceEEEEc
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE-ITDK----------LGLHSLR-QRHWYIQST 158 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~----------~~~~~~~-~~~~~~~~~ 158 (189)
|+|..+..++.+....|...+........|+++++||+|+........ +... ....... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998666666665555555544334699999999999987642111 1111 0000000 112238899
Q ss_pred ccC--CCCChHHHHHHHHHHHhhccc
Q 029675 159 CAT--SGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 159 Sa~--~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|++ .+.++.+++......+.+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999999876543
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.6e-23 Score=147.53 Aligned_cols=158 Identities=22% Similarity=0.240 Sum_probs=106.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhc--CCccccc-------------C----CcCceEEEEEEcCEEEEEEEcCCCCCchhch
Q 029675 18 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-------------P----TIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (189)
.+|+++|++++|||||+++|.+ +.+.... + +.......+..+...+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999987 4443221 1 2222334566778999999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC-Cc-cccCcce
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LH-SLRQRHW 153 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~-~~-~~~~~~~ 153 (189)
..+++.+|++++|+|+.+.. +.....++..... .+.|+++++||+|+.+... .+++...+. .. .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998632 2222333333322 4688999999999865322 122222221 00 1123456
Q ss_pred EEEEcccCCCCChHHH------HHHHHHHHhhc
Q 029675 154 YIQSTCATSGEGLYEG------LDWLSNNIASK 180 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~------~~~l~~~~~~~ 180 (189)
.++++||++|.|+.+. ++++.+++.+.
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 7899999999888544 44455555443
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=7.4e-23 Score=144.24 Aligned_cols=154 Identities=24% Similarity=0.230 Sum_probs=112.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccccc-------------------CCcCceEEEEEEcCEEEEEEEcCCCCCchhchh
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (189)
+|+++|.+|+|||||++.|.+....... .+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999887654321 233333445666778999999999999988899
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCccc-------
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSL------- 148 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~------- 148 (189)
.+++.+|++++|+|+.++.+... ...+... .. .+.|+++++||+|+...... +.+...+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654332 2223332 22 57999999999999864332 223333332221
Q ss_pred --cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 149 --RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
......++++||++|.|++++++++.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 12456799999999999999999998875
No 148
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=7.4e-24 Score=147.68 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=104.5
Q ss_pred cccCCcCceEEE--EE--EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCC
Q 029675 44 TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA 119 (189)
Q Consensus 44 ~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (189)
.+.||++..+.. +. ...+.+.+|||||+++++.++..+++++|++|+|||++++++|+.+..|+..+..... .+.
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC
Confidence 457888877643 33 3458899999999999999999999999999999999999999999988888766432 578
Q ss_pred eEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 120 p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
|+++|+||+|+.+. ...++.... ....++.|++|||++|.||+++|+++++.+.+..+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999998643 222222221 12234468999999999999999999999876543
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=1e-22 Score=139.32 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=105.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCC--cCceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 85 (189)
++|+++|++|+|||||++++.+.... ...++ .......+...+..+.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987753 22232 23333455667789999999997655321 23456789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|+.++.+......+.. ....|+++++||+|+.+.... ........++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776665543322 257999999999998765332 1222345788999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++++.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 150
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=4.6e-23 Score=141.10 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=102.2
Q ss_pred EEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh--------chhhhccCCCEE
Q 029675 21 LMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGL 88 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~ 88 (189)
+++|.+|+|||||+++|.+.... ...+ |.+.........+..+.+|||||...+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987632 2222 33444556667788999999999987654 334567889999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
++|+|..+..+... .++..++.. .+.|+++++||+|+.+...........+. ..++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 99999976543333 233344443 36999999999999765322111111111 1478999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++++.+++
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998763
No 151
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.5e-23 Score=142.03 Aligned_cols=150 Identities=27% Similarity=0.406 Sum_probs=113.3
Q ss_pred EEcCCCCChHHHHHhHhcCCc-cc-ccCCcCceEEEEEEc----CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 22 MVGLDAAGKTTILYKLKLGEI-VT-TIPTIGFNVETVEYK----NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
++|++|+|||||++++.+... .. ..+|. ......... ...+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998887 33 33444 555554443 678999999999988888888999999999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
++.++.....++..........+.|+++++||+|+.+......... ...........++++|+.++.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL--AEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHH--HHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9888888887744444444447899999999999976544333210 0001122345789999999999999999875
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1e-22 Score=159.69 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=112.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc--ccccCCc--CceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (189)
+..++|+++|++|+|||||+|+|.+... .+..|++ +.....+..++..+.+|||||...+... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999998753 3444433 3334556778889999999998655432 24577
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+.+|++++|+|++++.+++.. |+..... .+.|+++|+||+|+.+. +.+.+.. ..+..++++|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec
Confidence 899999999999988776654 4444422 47899999999998643 2222221 1223578899998
Q ss_pred CCChHHHHHHHHHHHhhccc
Q 029675 163 GEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~ 182 (189)
.||+++++.+.+.+.+...
T Consensus 346 -~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred -CCHHHHHHHHHHHHHHHhc
Confidence 6999999999998887653
No 153
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=9.8e-23 Score=151.33 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=104.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccc--c-cCCcCceEEE-EEEcCEEEEEEEcCCCCCchh--------chhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFNVET-VEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (189)
+|+++|.+|+|||||+|+|.+..+.. . ..|+...... ....+..+.+|||||...... ....+++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987642 2 2243333322 234557899999999753211 1345678999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCCh
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+... .....++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998766554 333333333 478999999999986432211111111110 01115889999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029675 167 YEGLDWLSNNIASKV 181 (189)
Q Consensus 167 ~~~~~~l~~~~~~~~ 181 (189)
+++++.+.+.+...-
T Consensus 153 ~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 153 SFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999998875543
No 154
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=5.8e-23 Score=146.43 Aligned_cols=157 Identities=27% Similarity=0.392 Sum_probs=116.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCC-CEEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVD 93 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 93 (189)
+|+++|++|+|||||+++|.++.+....+++..+...+.. .+..+.+||+||+++++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877655554444444333 367899999999999999999999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------C------------
Q 029675 94 SNDR-DRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG-------------L------------ 145 (189)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (189)
+.+. .++.....++..++... .....|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9986 67777777776665432 125799999999999876433222221110 0
Q ss_pred ------c--ccc--CcceEEEEcccCCCC-ChHHHHHHHHH
Q 029675 146 ------H--SLR--QRHWYIQSTCATSGE-GLYEGLDWLSN 175 (189)
Q Consensus 146 ------~--~~~--~~~~~~~~~Sa~~~~-~i~~~~~~l~~ 175 (189)
. .+. ...+.|.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 246789999998876 69999888864
No 155
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=5.9e-23 Score=156.87 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=108.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEE-cCEEEEEEEcCCCC---------Cchhchhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~~ 82 (189)
..++|+++|.+|+|||||+|+|.+..+. . ..+|.+.....+.. .+..+.+|||||.. .+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999998743 2 24566776666776 46799999999972 222222 346
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.++|++++|+|++++.++.....+ ..++......+.|+++|+||+|+.+. .++..... ....++.+||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999988776655433 33333333357899999999999753 22221111 112478899999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
|.|++++++.+.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.4e-23 Score=162.58 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC--------chhchhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (189)
...+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3479999999999999999999987654 2333 23334455566778899999999763 2333556788
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +........ + + ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999987655432 233344433 5799999999999864321 111111111 1 1 2458999999
Q ss_pred CChHHHHHHHHHHHhh
Q 029675 164 EGLYEGLDWLSNNIAS 179 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~ 179 (189)
.|++++++++++.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988765
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=2.9e-23 Score=144.78 Aligned_cols=152 Identities=22% Similarity=0.192 Sum_probs=105.4
Q ss_pred EEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEc-CEEEEEEEcCCCCC----chhc---hhhhccCCCEEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIF 90 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i~ 90 (189)
++|++|+|||||+++|.+.... .. ..|.+.....+... +..+.+|||||... .+.+ ....++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988642 22 23444545556666 78999999999632 2222 2345678999999
Q ss_pred EEECCCc------ccHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 91 VVDSNDR------DRVVEARDELHRMLNEDE------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
|+|+.++ .++.....+...+..... ..+.|+++++||+|+.......+.. ...........++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 466666666655543322 1479999999999997653333321 111111233468899
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029675 159 CATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (189)
||+++.|++++++.+.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999988764
No 158
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.4e-22 Score=159.90 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc-----------hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (189)
..++++++|.+++|||||+|+|++.... ...+ |.+.....+...+..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987643 2222 333333455567778999999997654332 134
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
+++.+|++++|+|++++.+.+.. ..+ ..... .+.|+++++||+|+. +....+++...+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~-~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIA-GLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHH-HHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 67899999999999876655443 223 33322 478999999999997 3323334443333221112345789999
Q ss_pred cCCCCChHHHHHHHHHHHhhcc
Q 029675 160 ATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~~ 181 (189)
|++|.|++++++++.+......
T Consensus 326 A~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988766543
No 159
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-25 Score=149.81 Aligned_cols=161 Identities=17% Similarity=0.329 Sum_probs=134.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE----EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+|++++|..++||||+|.+++.+-|. .+..|++.++.+ +..+++...+||++|++.|.....+|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 5699999999999999999999999887 567788877643 44567888999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
||+-++..+|+....|...+..+. ..+|.++|-||+|+.+.. ...++.... +..++.++.+|++...|+-.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999998765 579999999999997542 222222211 12234578899999999999
Q ss_pred HHHHHHHHHhhcccc
Q 029675 169 GLDWLSNNIASKVSS 183 (189)
Q Consensus 169 ~~~~l~~~~~~~~~~ 183 (189)
+|..+++++.++.++
T Consensus 172 vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=6.7e-23 Score=145.15 Aligned_cols=157 Identities=20% Similarity=0.116 Sum_probs=104.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC----Ccc----c--ccCCcCceEEEEEEc--------------CEEEEEEEcCCCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG----EIV----T--TIPTIGFNVETVEYK--------------NISFTVWDVGGQDK 73 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~i~D~~g~~~ 73 (189)
++|+++|++++|||||+++|.+. .+. + ...|.+..+..+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1 123444444444333 67999999999976
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCcc--
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHS-- 147 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~-- 147 (189)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444445556789999999998644333322211 1121 25799999999998743322 22222211111
Q ss_pred ccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
....++.++++||++|+|++++++.+.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11234578999999999999999999988754
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2.3e-22 Score=158.39 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=110.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc--ccccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc--------hhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (189)
++.++|+++|.+|+|||||+|+|.+... .+..+ |.+.....+..++..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764 33333 444555567778889999999998654322 23467
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+.+|++++|+|++++.++.... .|.. ..+.|+++|+||+|+.+..... ......++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~-~l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDE-ILEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHH-HHHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 8899999999999887766433 2322 2578999999999997542221 11223578999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 029675 163 GEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~ 179 (189)
|.|++++++++.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998764
No 162
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=3.7e-22 Score=136.86 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=101.8
Q ss_pred EEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh------chhhhcc--CCCEEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NTQGLIF 90 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~ 90 (189)
++|.+|+|||||++++.+..+. ...+ |.+.....+..++..+.+|||||+..+.. ++..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999987633 3333 44555566777778999999999876654 2455554 8999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
|+|..+++... .++..+.. .++|+++++||+|+.+..........+. ...+++++++|+.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998754332 23333322 3689999999999975432211111111 1123468899999999999999
Q ss_pred HHHHHHH
Q 029675 171 DWLSNNI 177 (189)
Q Consensus 171 ~~l~~~~ 177 (189)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9988764
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=7e-22 Score=137.22 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh-----------chhhh
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-----------LWRHY 81 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~ 81 (189)
.++|+++|.+|+|||||++++.+.... ...+ +.......+...+..+.+|||||..+... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 589999999999999999999987643 2222 22232344556677899999999654311 11235
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEcc
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
++.+|++++|+|..++.+.... ..+..... .+.|+++++||+|+.+. ...+.+...............++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999887665443 22322222 46899999999998765 33333333332211111235688999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029675 160 ATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (189)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999988753
No 164
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.2e-22 Score=152.43 Aligned_cols=156 Identities=24% Similarity=0.218 Sum_probs=108.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcC-EEEEEEEcCCCCCc----hhch---hhhccCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN-ISFTVWDVGGQDKI----RPLW---RHYFQNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~----~~~~---~~~~~~~d 86 (189)
-.|+++|.|++|||||++++.+.... .+ ..|.......+...+ ..+.+||+||.... ..+. ...+..++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 57899999999999999999986532 22 235555555566666 89999999997421 1222 33345699
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 87 GLIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
++++|+|+++. +.++....|..++... ....+.|+++|+||+|+.+....+++.+.+.. ..+..++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999876 5666665555444322 12247899999999999765333333332221 1134688999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 165
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.5e-22 Score=135.67 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCc------hhchhhhc--cCCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI------RPLWRHYF--QNTQ 86 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~~d 86 (189)
++|+++|.||+|||||+|+|.+.+.. ...| |.+.....+...+..+.++|+||.... +.....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 4444 555555677888999999999995432 22334444 5899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
++++|+|+++. +.......++.. .++|+++++||+|.... ...+.+.+.++. +++.+||++
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 99999999763 333333444443 47999999999997543 245667777654 588999999
Q ss_pred CCChHHHHHHH
Q 029675 163 GEGLYEGLDWL 173 (189)
Q Consensus 163 ~~~i~~~~~~l 173 (189)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999865
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.5e-21 Score=152.35 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=106.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCE-EEEEEEcCCCCCc--hhc------hhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNI-SFTVWDVGGQDKI--RPL------WRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~------~~~~~~~~ 85 (189)
.+|+++|.+|+|||||+|+|.+..+. . ...|.+.....+...+. .+.+|||||..+. ... ....++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 2 23455555555666554 8899999997432 111 22345789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|++++.++..... +..++......+.|+++|+||+|+.+... ..+... .. .. ..++.+||++|.|
T Consensus 278 DlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~~----~~-~~~v~ISAktG~G 349 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-EE----NK-PIRVWLSAQTGAG 349 (426)
T ss_pred CEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-hc----CC-CceEEEeCCCCCC
Confidence 99999999998876666533 22233322224789999999999864311 111111 00 00 1246899999999
Q ss_pred hHHHHHHHHHHHhhc
Q 029675 166 LYEGLDWLSNNIASK 180 (189)
Q Consensus 166 i~~~~~~l~~~~~~~ 180 (189)
++++++++.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988653
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=6e-22 Score=140.63 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=105.2
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcCEEEEEEEcCCCC----------Cchh
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQD----------KIRP 76 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~----------~~~~ 76 (189)
++.+.....+|+++|++|+|||||++++.+..+. ...++.+... .... .+..+.+|||||.. .+..
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 4566677899999999999999999999987643 3333433221 1111 24689999999953 2333
Q ss_pred chhhhccC---CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 77 LWRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 77 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
....+++. .+++++|+|..++..... .++...+.. .+.|+++++||+|+.+....+.+....... +.....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCC
Confidence 33444443 467888999876543322 223333332 468899999999987543333222211111 111134
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
.++++|++++.|++++++.+.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 67899999999999999999887654
No 168
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=7e-23 Score=134.21 Aligned_cols=109 Identities=23% Similarity=0.414 Sum_probs=80.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc---cccCCc--Cc--eEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTI--GF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~---~~~~t~--~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
||+|+|++|+|||||+++|.+..+. ...++. .. ....+......+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 112222 22 2223333445699999999999888877789999999999
Q ss_pred EECCCcccHHHHHHH---HHHHhcCCCCCCCeEEEEEeCCC
Q 029675 92 VDSNDRDRVVEARDE---LHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
||++++++++.+.++ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887544 4444332 25699999999998
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=1.7e-21 Score=134.30 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCc-CceEEEEEEcCEEEEEEEcCCCCCchh--------chhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTI-GFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~-~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 83 (189)
+..+|+++|++|+|||||++++.+...... ..+. ......+......+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998775421 1222 122223344567899999999764432 2344578
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+|++++|+|+.++ +.....++...+.. .+.|+++++||+|+.. .....++....... .....++++|+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 89999999999876 22333344444433 3689999999999873 33333333333221 1124688999999
Q ss_pred CCChHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNN 176 (189)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (189)
+.|++++++.+.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998765
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.3e-21 Score=156.33 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=111.7
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEEcCE-EEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
..+..+|+++|++++|||||+++|.+..+... . .|.......+...+. .+.+|||||++.|..++...++.+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34678999999999999999999998876642 2 234444455555444 8999999999999999998999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc----cCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (189)
+|+|+++....+. ...+... .. .+.|+++++||+|+.+. ..+++...+..... ......++++||++|+|
T Consensus 164 LVVda~dgv~~qT-~e~i~~~-~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQT-IEAISHA-KA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhH-HHHHHHH-HH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999876432222 1222222 21 47899999999998643 23333333221111 01235789999999999
Q ss_pred hHHHHHHHHHH
Q 029675 166 LYEGLDWLSNN 176 (189)
Q Consensus 166 i~~~~~~l~~~ 176 (189)
++++++++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=7.1e-22 Score=135.57 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=95.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchh----chhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP----LWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~d~~i~v~d~ 94 (189)
+|+++|++|+|||||+|++.+.... ..++.+. .+... .+|||||...... .....++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998765421 1222222 22221 3799999732222 222346899999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
++.+++.. .++.... .+.|+++++||+|+.+. ..+.+.+....... ..+++++||++|+|++++++.+.
T Consensus 75 ~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPDA-DVAATRKLLLETGF---EEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccccC--HHHHhcc-----CCCCeEEEEEccccCcc-cHHHHHHHHHHcCC---CCCEEEEECCCccCHHHHHHHHH
Confidence 98765522 3333321 36789999999998653 33333332211111 13688999999999999999998
Q ss_pred HHHhhcc
Q 029675 175 NNIASKV 181 (189)
Q Consensus 175 ~~~~~~~ 181 (189)
+.+.+..
T Consensus 144 ~~~~~~~ 150 (158)
T PRK15467 144 SLTKQEE 150 (158)
T ss_pred Hhchhhh
Confidence 8775543
No 172
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.5e-21 Score=159.50 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=111.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCc--ccccC--CcCceEEEEEEcCEEEEEEEcCCCCC----------chhc-hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQDK----------IRPL-WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~ 80 (189)
...+|+++|.+|+|||||+|+|.+... ....+ |.+.....+..++..+.+|||||..+ +..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999874 33333 33333345566777899999999532 1111 134
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++++|+|+++..+++... .+..+.. .+.|+++|+||+|+.+....+.+.......+......+.+.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999877766653 3333332 47899999999999765333333333222111112235678999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++++++.+.+.+.+..
T Consensus 604 ktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999988876543
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.1e-21 Score=151.72 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=110.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEEcCEEEEEEEcCCCCCchhc-----------hh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPL-----------WR 79 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 79 (189)
...++|+++|.+|+|||||+|+|++.... ...+++. .....+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999987633 3333222 222344567788999999996432221 22
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.+++.+|++++|+|+.++.+.+.. .+...... .+.|+++++||+|+.+....+++...+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 467889999999999877655443 22333332 4689999999999975433444444433222222345789999
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
|++|.|++++++.+.+.....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988765543
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=9.9e-22 Score=140.21 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc---c-c--ccCCcCceEEEEEEc---------------------------C----
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI---V-T--TIPTIGFNVETVEYK---------------------------N---- 60 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~---------------------------~---- 60 (189)
++|+++|+.|+|||||+..+.+... . + ...+....+..+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999865421 1 0 011211111111110 2
Q ss_pred --EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 029675 61 --ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA- 137 (189)
Q Consensus 61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 137 (189)
..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+ ... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67999999999998888888888999999999998632111111222222 111 235789999999997542222
Q ss_pred ---HHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 138 ---EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
++...+.. .....+.++++||++|+|++++++.+.+.+.
T Consensus 158 ~~~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 12221111 0112456889999999999999999987654
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3e-21 Score=152.52 Aligned_cols=148 Identities=23% Similarity=0.303 Sum_probs=104.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC--------chhchhhhccCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNT 85 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~ 85 (189)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.+. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999988743 2233 44555666777889999999999886 233345567899
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
|++++|+|..++.+. ...++..++.. .+.|+++++||+|+.+.. ....+..... +. .++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-LG----EPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-CC----CCEEEEeeCCCC
Confidence 999999999764332 22233334433 378999999999975421 2222221111 11 367899999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++.+.+..
T Consensus 150 v~~l~~~I~~~~ 161 (435)
T PRK00093 150 IGDLLDAILEEL 161 (435)
T ss_pred HHHHHHHHHhhC
Confidence 999999998743
No 176
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=6.8e-22 Score=139.54 Aligned_cols=156 Identities=23% Similarity=0.218 Sum_probs=111.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---------------------cccCCcCceEEEEE--EcCEEEEEEEcCCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------------TTIPTIGFNVETVE--YKNISFTVWDVGGQD 72 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (189)
+.++|+++|+.++|||||+++|....-. ...-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999753210 11236666677777 788999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----Ccc
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----LHS 147 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~ 147 (189)
.|.......++.+|++|+|+|+.+.-.. .....+... .. .+.|+++++||+|+.. ....+...+.. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~-~~---~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL-RE---LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH-HH---TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccc-cc---cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 9998888889999999999999864322 222223333 32 5788999999999982 22222222221 111
Q ss_pred ccC-cceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 148 LRQ-RHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
... ..++++.+||.+|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 111 357899999999999999999988764
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4e-21 Score=151.07 Aligned_cols=159 Identities=26% Similarity=0.292 Sum_probs=109.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--c-ccCCcCceEEEEEEcCEEEEEEEcCCCCC----ch---hchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYKNISFTVWDVGGQDK----IR---PLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~~d~ 87 (189)
-+|+++|.||||||||+|+|.+.... . ...|.......+...+..|.+||+||... .. ......+..+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 57999999999999999999986543 2 23466666777888888999999999532 11 112334567999
Q ss_pred EEEEEECCCc----ccHHHHHH---HHHHHhcCC-------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCccccCcc
Q 029675 88 LIFVVDSNDR----DRVVEARD---ELHRMLNED-------ELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRQRH 152 (189)
Q Consensus 88 ~i~v~d~~~~----~s~~~~~~---~~~~~~~~~-------~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~ 152 (189)
+++|+|+++. +.++.... .+..+.... ...+.|+++|+||+|+.+.....+ +...+ ...+
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g 314 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG 314 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence 9999999752 33433333 333332110 225789999999999975432222 22221 1224
Q ss_pred eEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 153 WYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+.++++||++++|++++++++.+.+....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 57899999999999999999998876643
No 178
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=5.3e-21 Score=154.87 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC-------ccc-cc------CCcCceE----EEEEE-----cCEEEEEEEcCCCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE-------IVT-TI------PTIGFNV----ETVEY-----KNISFTVWDVGGQDK 73 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~-------~~~-~~------~t~~~~~----~~~~~-----~~~~~~i~D~~g~~~ 73 (189)
-.+|+++|++++|||||+++|+... +.. .. .+.++.+ ..+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998642 111 11 1122222 22333 237899999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccccC
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRQ 150 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (189)
|...+..+++.+|++|+|+|+++..+.+....|+... . .+.|+++++||+|+.+.... +++.+.++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999876666555444332 2 36799999999998653221 2333333321
Q ss_pred cceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 151 RHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
...++++||++|.|++++++.+.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1247899999999999999999887644
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=4.8e-21 Score=130.90 Aligned_cols=150 Identities=24% Similarity=0.197 Sum_probs=104.9
Q ss_pred EEcCCCCChHHHHHhHhcCCccc--c--cCCcCceEEEEEEc-CEEEEEEEcCCCCCchh-------chhhhccCCCEEE
Q 029675 22 MVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYK-NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLI 89 (189)
Q Consensus 22 viG~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i 89 (189)
++|++|+|||||++++.+..... . ..+........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876542 1 12333333333333 67899999999876543 3345778999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
+|+|..+........ +...... .+.|+++++||+|+........................++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999877665554 2222222 58999999999999876544443221122222234567899999999999999
Q ss_pred HHHHHHH
Q 029675 170 LDWLSNN 176 (189)
Q Consensus 170 ~~~l~~~ 176 (189)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998875
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=3.5e-21 Score=151.91 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=106.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCC--------CchhchhhhccCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQ 86 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d 86 (189)
+|+++|.+|+|||||+|+|.+.... ...+ |.+..+..+.+.+..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987743 2223 4455566677788899999999963 23344566778999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
++++|+|..+..+ .....+..++.. .++|+++|+||+|+.+... ..++ ..++. ..++++||++|.|
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~-~~lg~-------~~~~~vSa~~g~g 147 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEF-YSLGF-------GEPIPISAEHGRG 147 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHH-HhcCC-------CCeEEEeCCcCCC
Confidence 9999999976432 222334444443 4789999999999865432 1111 11111 1478999999999
Q ss_pred hHHHHHHHHHHHhh
Q 029675 166 LYEGLDWLSNNIAS 179 (189)
Q Consensus 166 i~~~~~~l~~~~~~ 179 (189)
++++++.+.+.+..
T Consensus 148 v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 148 IGDLLDAILELLPE 161 (429)
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999888744
No 181
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.3e-20 Score=146.34 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=106.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--c-ccCCcCceEEEEEEc-CEEEEEEEcCCCCC----chhchhhh---ccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNVETVEYK-NISFTVWDVGGQDK----IRPLWRHY---FQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~~---~~~~d~ 87 (189)
.|+++|.|+||||||++++.+.+.. . ...|...+...+... +..+.+||+||... ...+...+ +..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987632 2 233555555556665 67999999999632 22233333 456999
Q ss_pred EEEEEECCCc---ccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 88 LIFVVDSNDR---DRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
+++|+|+++. +.++....+...+... ....++|+++|+||+|+.... ..+++...+. ..++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 4555555544444321 122478999999999984331 1222322222 3588999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 029675 163 GEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~ 180 (189)
++|++++++++.+.+.+.
T Consensus 312 geGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 312 GQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999887654
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=1.3e-21 Score=137.05 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=95.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCce--EEEEEEcCEEEEEEEcCCCCC----------chh
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQDK----------IRP 76 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~~----------~~~ 76 (189)
.+.++.+..+|+++|++|+|||||++++.+..+. ...++.+.. ...+..+ ..+.+|||||... +..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 4566788999999999999999999999988633 323332221 1122222 3799999999532 222
Q ss_pred chhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCcccc
Q 029675 77 LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLHSLR 149 (189)
Q Consensus 77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (189)
+...+++ .+|++++|+|..++-+.... .+...+.. .+.|+++++||+|+.+..+. +++...+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~--- 161 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD--- 161 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence 3334444 46899999999865433332 22333333 47899999999998754322 2233333221
Q ss_pred CcceEEEEcccCCCCChH
Q 029675 150 QRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~ 167 (189)
...+.++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 123468999999999974
No 183
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=9.5e-21 Score=142.36 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=106.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCcCceEEE-EEEcCEEEEEEEcCCCCCch--------hchhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVET-VEYKNISFTVWDVGGQDKIR--------PLWRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (189)
+.-.|+++|++|+|||||+|+|++..+... ..|+...... ...++..+.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456799999999999999999999876522 2233332222 23355799999999965432 22334567
Q ss_pred CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 84 NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+.. .....+....+... .....++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 23333444444443 4689999999999973 22222232222211 1123688999999
Q ss_pred CCChHHHHHHHHHHHhhcc
Q 029675 163 GEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~ 181 (189)
+.|++++++.+.+.+....
T Consensus 156 ~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCHHHHHHHHHHhCCCCC
Confidence 9999999999998876543
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.7e-20 Score=154.77 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=112.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+.-.|+++|+.++|||||+++|.+..+... . .|.......+.+.+..+.+|||||++.|..++...++.+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999988776532 2 23334445566677899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc-c-c--cCcceEEEEcccCCCCCh
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-L--RQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~Sa~~~~~i 166 (189)
|+|+++...-+. ...+... .. .+.|+++++||+|+.+. ..+.+...+... . . ....+.++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~~a-~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAINHA-KA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHHHH-Hh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999986422111 1222222 21 57899999999999653 233333322111 1 1 112367999999999999
Q ss_pred HHHHHHHHHH
Q 029675 167 YEGLDWLSNN 176 (189)
Q Consensus 167 ~~~~~~l~~~ 176 (189)
+++++.+...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998754
No 185
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=126.75 Aligned_cols=157 Identities=26% Similarity=0.343 Sum_probs=126.5
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc---------cc-c---CCcCceEEEEEEcC-EEEEEEEcCCCCCchhch
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV---------TT-I---PTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~---------~~-~---~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~ 78 (189)
......||+|+|+.++||||++.++...... +. . .|+..++......+ ..+.+++||||++|..+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 3467899999999999999999999876631 11 1 35556666666655 899999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
..+.+.+.++|+++|.+.+..+ ... .+..++... ..+|++|+.||.|+.+...++++.+.+.... ...+.++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999988877 333 344444442 2299999999999999999999998887664 34578899
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029675 159 CATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (189)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998887765
No 186
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=4e-21 Score=146.79 Aligned_cols=148 Identities=21% Similarity=0.245 Sum_probs=113.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCch---------hchhhhccC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQN 84 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 84 (189)
..|+++|.||+|||||+|||.+.+.. +. .-|.+-.+....+.+..|.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998854 33 347788888899999999999999965322 224556678
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
||++|+|+|.. +..+.....+..++.. .++|+++|+||+|-... ++...++...++. ..+.+||..|.
T Consensus 84 ADvilfvVD~~--~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~---e~~~~efyslG~g----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGR--EGITPADEEIAKILRR---SKKPVILVVNKIDNLKA---EELAYEFYSLGFG----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCC--CCCCHHHHHHHHHHHh---cCCCEEEEEEcccCchh---hhhHHHHHhcCCC----CceEeehhhcc
Confidence 99999999994 4456666667777764 57999999999997633 2322222222221 46789999999
Q ss_pred ChHHHHHHHHHHH
Q 029675 165 GLYEGLDWLSNNI 177 (189)
Q Consensus 165 ~i~~~~~~l~~~~ 177 (189)
|+.++.+.+++.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999987
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=5.2e-21 Score=154.79 Aligned_cols=156 Identities=22% Similarity=0.159 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC---cc-ccc--CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE---IV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~---~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
+.|+++|++++|||||+++|.+.. +. +.. .|++..+..+..++..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 22 222 344555566777778999999999999999888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHH----hhhCCccccCcceEEEEcccCCCCCh
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (189)
+|+++....+ ....+ .++.. .++| +++++||+|+.+....+.+. ........ ..+++++++||++|+|+
T Consensus 81 VDa~~G~~~q-T~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 81 VDADEGVMTQ-TGEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EECCCCCcHH-HHHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCc
Confidence 9998632111 11111 22222 3566 99999999997643222222 11111001 11467899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029675 167 YEGLDWLSNNIAS 179 (189)
Q Consensus 167 ~~~~~~l~~~~~~ 179 (189)
+++++.+.+.+..
T Consensus 155 ~eL~~~L~~l~~~ 167 (581)
T TIGR00475 155 GELKKELKNLLES 167 (581)
T ss_pred hhHHHHHHHHHHh
Confidence 9999988776544
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.4e-20 Score=154.61 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=106.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCc--CceEEEEEEcCEEEEEEEcCCCCC--------chhchhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTI--GFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 81 (189)
+....+|+++|.+|+|||||+|+|.+.... ...|++ +..+....+.+..+.+|||||.+. +......+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 344578999999999999999999987653 333332 222334455678999999999763 22334556
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
++.+|++++|+|..+. +......+...+.. .+.|+++|+||+|+..... .......+. .. ..+++||+
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~~----~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-LG----EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-CC----CeEEEECC
Confidence 7899999999999753 33333344444443 5799999999999864321 111111111 11 24589999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 029675 162 SGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~ 179 (189)
+|.|++++++++.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999988755
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=2.7e-20 Score=152.46 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=111.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc-c--CCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~-~--~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
..+..+|+++|++++|||||+++|.+..+... . .|.......+.+ .+..+.+|||||++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999998776532 1 232222333332 3589999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc-c-cc--CcceEEEEcccCC
Q 029675 87 GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-S-LR--QRHWYIQSTCATS 162 (189)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~ 162 (189)
++|+|+|+++....+.. ..+..+ .. .+.|+++++||+|+.+. ..+++...+... . .. ...++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI-QA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH-Hh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999764322221 222222 22 57899999999998753 233333322111 0 01 1236799999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
|.|++++++.+....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987754
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=1.6e-20 Score=147.70 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=103.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--cc--------------------------------cccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 59 (189)
....++|+++|++++|||||+++|+... .. ....|.+..+..+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999997422 00 1122555666667778
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A- 136 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~- 136 (189)
+..+.+|||||++.|.......++.+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766666789999999999986322322222222333221 2357999999999975321 1
Q ss_pred ---hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 137 ---AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++...+....+....+.++++||++|+|+++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 2222222222222234679999999999998754
No 191
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-20 Score=120.52 Aligned_cols=163 Identities=22% Similarity=0.323 Sum_probs=126.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceE-EEEEE---cCEEEEEEEcCCCCCc-hhchhhhccCCCE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNV-ETVEY---KNISFTVWDVGGQDKI-RPLWRHYFQNTQG 87 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~-~~~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~ 87 (189)
+..|++|+|..++|||+++.+++.+... +..||++..| ..++- ....+.++||.|-..+ ..+-..|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5689999999999999999999876643 4566766544 33332 2357999999998777 6677889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+++||++.+++||+.....-..+-+......+|+++++||+|+.+. .++....+...++...+..+++++++..++-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999887654444444555577999999999999754 4444455555555566788899999999999
Q ss_pred HHHHHHHHHHhhcc
Q 029675 168 EGLDWLSNNIASKV 181 (189)
Q Consensus 168 ~~~~~l~~~~~~~~ 181 (189)
+-|..+...+.+..
T Consensus 165 epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQ 178 (198)
T ss_pred hHHHHHHHhccCCc
Confidence 99999988876653
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=1.1e-19 Score=147.48 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=109.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC--c---------ccc---c----CCcCceEEEEEE-----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I---------VTT---I----PTIGFNVETVEY-----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~--~---------~~~---~----~t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (189)
.+-.+++++|+.++|||||+++|+... + .+. . .|.......+.+ .++.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345799999999999999999997531 1 111 1 122222233333 3688999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSL 148 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~ 148 (189)
.+|...+..+++.+|++|+|+|+++....+....|. .... .+.|+++++||+|+.+.... +++...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 999999999999999999999998765544443332 2222 46889999999998653221 2233332221
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
...++.+||++|.|++++++++.+.+...
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 12478999999999999999998876543
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=1.2e-20 Score=148.47 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=102.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC--Ccc-------------------------c-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~--~~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (189)
+...++|+++|++++|||||+.+|+.. .+. + ...|.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456799999999999999999999752 111 0 012444445556667
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD-ELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 136 (189)
+..+.+|||||+++|.......+..+|++++|+|+++.+++..... +...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8899999999999887777777889999999999987643211111 111222221 2468999999999975321 1
Q ss_pred ----hHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 137 ----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
+++........+....+.++++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222234689999999999998744
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=2.9e-19 Score=129.83 Aligned_cols=149 Identities=22% Similarity=0.196 Sum_probs=101.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcCEEEEEEEcCCCCCch-------hchhhhccCCCEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 88 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~ 88 (189)
+++++|.+|+|||||+++|.+.... . ...|.+.....+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999987632 2 2334445556677788999999999975332 2244678999999
Q ss_pred EEEEECCCcc-cHHHHHHHHHH----------------------------------------HhcCC-------------
Q 029675 89 IFVVDSNDRD-RVVEARDELHR----------------------------------------MLNED------------- 114 (189)
Q Consensus 89 i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~~~~------------- 114 (189)
++|+|+++++ ....+...+.. ++.+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998654 22222222210 11000
Q ss_pred -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 115 -----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 115 -----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.....|+++|+||+|+.+. ++... +.. . ..++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~~----~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LAR----Q--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hhc----C--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0123689999999998654 33332 111 1 2377899999999999999988764
No 195
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.3e-19 Score=140.10 Aligned_cols=160 Identities=22% Similarity=0.176 Sum_probs=107.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcC-EEEEEEEcCCCCCc-------hhchhhhccCCCE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-ISFTVWDVGGQDKI-------RPLWRHYFQNTQG 87 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d~ 87 (189)
.|+++|.||||||||+|+|.+.+.. +. ..|.......+...+ ..+.++||||.-.- .......+..+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6999999999999999999987643 22 235555566666654 46999999996431 1112235678999
Q ss_pred EEEEEECC---CcccHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCC
Q 029675 88 LIFVVDSN---DRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (189)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (189)
+++|+|++ +.+.++....++..+... ....+.|+++|+||+|+.+.....+....+... . .....++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCC
Confidence 99999987 344555555555444332 122468999999999987543322222221110 0 01124778999999
Q ss_pred CChHHHHHHHHHHHhhc
Q 029675 164 EGLYEGLDWLSNNIASK 180 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~ 180 (189)
.|++++++.+.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988664
No 196
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.84 E-value=1e-20 Score=124.18 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=131.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEE--E--EEcCEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
.-.+||.++|++..|||||+-++.++.+. +...+.++++.. + ...++.|.+||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 44689999999999999999999999986 456677777643 3 335678999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
++||++.++++..+..|+.+...... ..+| |++|+|.|+.-... .++-....+...++..+...+.||+....||+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 99999999999999999988766533 4566 77899999743221 12111111222233345567789999999999
Q ss_pred HHHHHHHHHHhhccccCcc
Q 029675 168 EGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~ 186 (189)
.+|..+..++.......++
T Consensus 176 KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 176 KIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred HHHHHHHHHHhCCceeccc
Confidence 9999999998887655544
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=136.67 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=113.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc--------hh
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL--------WR 79 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (189)
..-++.++++++|.||+|||||+|.|.+.... +..| |.++-...++.+++.+.++||+|-...... ..
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 34467899999999999999999999998743 5444 666666778899999999999996543322 33
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
..+..||.+++|+|.+.+.+ .....+..... .++|+++|.||.|+........+ +. ..+..++.+|
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~--~~d~~~~~~~~----~~~~~i~v~NK~DL~~~~~~~~~-~~-------~~~~~~i~iS 357 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLD--KEDLALIELLP----KKKPIIVVLNKADLVSKIELESE-KL-------ANGDAIISIS 357 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCc--hhhHHHHHhcc----cCCCEEEEEechhcccccccchh-hc-------cCCCceEEEE
Confidence 45578999999999987522 11111222111 57999999999999876553333 11 1122578899
Q ss_pred cCCCCChHHHHHHHHHHHhhc
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~~ 180 (189)
+++|+|++.+.+.+.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998887766
No 198
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=9.1e-20 Score=132.58 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=111.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC-CcCceE-EEEEEcCEEEEEEEcCCCCCc--------hhchhhhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNV-ETVEYKNISFTVWDVGGQDKI--------RPLWRHYF 82 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~-t~~~~~-~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~ 82 (189)
.+.-.|+++|.||+|||||+|++++.+.. +..| |+...+ ..+..++..+.++||||--.- .+.....+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45567899999999999999999999976 3332 443333 334557889999999994221 22244556
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEcccC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..+|++++|+|+.++ +.....+..+.++. .+.|+++++||.|...... ...+........ .....+++||+
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---~f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---PFKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---CcceEEEeecc
Confidence 789999999999764 33344555555554 4689999999999876644 233333222111 11268899999
Q ss_pred CCCChHHHHHHHHHHHhhcc
Q 029675 162 SGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~~~ 181 (189)
+|.|++.+.+.+.+.+-+-.
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred ccCCHHHHHHHHHHhCCCCC
Confidence 99999999999988876543
No 199
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=4.6e-19 Score=128.95 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=82.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--------------ccc-------cCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--------------VTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++|+|||||+++|+...- .+. ..|.......+.+++.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975310 010 11333445667788999999999999999999
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+++.+|++++|+|..+.... ....++..... .+.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 99999999999999999865432 23344443332 4789999999999875
No 200
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.9e-19 Score=145.62 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC--Ccccc-----------------cCCcCceEEEEEEcCEEEEEEEcCCCCCchhch
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG--EIVTT-----------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (189)
.+|+++|+.++|||||+++|+.. .+... ..|+......+.+.++++.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999852 22111 123344445678889999999999999999999
Q ss_pred hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc--cCcce
Q 029675 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQRHW 153 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 153 (189)
..+++.+|++++|+|+.+.. ......+|..... .++|+++++||+|+.+... .+++...+..... ++..+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999997532 3344455555544 4688999999999865321 1222232221111 22346
Q ss_pred EEEEcccCCCC----------ChHHHHHHHHHHHhh
Q 029675 154 YIQSTCATSGE----------GLYEGLDWLSNNIAS 179 (189)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~ 179 (189)
+++.+||++|. |++.+++.+++.+-.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 78899999995 799999888877654
No 201
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.8e-19 Score=145.99 Aligned_cols=139 Identities=18% Similarity=0.255 Sum_probs=98.6
Q ss_pred cCCCCChHHHHHhHhcCCcc-cccCCcCc--eEEEEEEcCEEEEEEEcCCCCCchhc------hhhhc--cCCCEEEEEE
Q 029675 24 GLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVV 92 (189)
Q Consensus 24 G~~~~GKssli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 92 (189)
|++|+|||||+|++.+.... .+.|++.. ....+..++..+++|||||++++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999988753 44454433 33456667788999999999876543 33333 3799999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|.++.+. ...+..+... .+.|+++++||+|+.+... .+++.+.+ +++++++||++|+|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 9986432 2233333332 4789999999999854321 22333333 24688999999999999
Q ss_pred HHHHHHHHH
Q 029675 169 GLDWLSNNI 177 (189)
Q Consensus 169 ~~~~l~~~~ 177 (189)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.2e-19 Score=144.73 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=103.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccC-----CcCceEEEEEE----------------cCEEEEEEEcCCCCCch
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY----------------KNISFTVWDVGGQDKIR 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~ 75 (189)
.--|+++|++++|||||+++|.+..+....+ +++..+...+. ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3468999999999999999999887653322 22332221111 11238899999999999
Q ss_pred hchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhH
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAE 138 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~ 138 (189)
.++..+++.+|++++|+|+++. .+++.+ ..+.. .+.|+++++||+|+.+... .+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999863 333222 12222 4789999999999864210 111
Q ss_pred HH-----------hhhCCccc----------cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 139 IT-----------DKLGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 139 ~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+. ..+....+ ......++++||++|+|++++.+++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 10 01111111 11346899999999999999999886544
No 203
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.9e-20 Score=124.39 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=134.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
.++++++|..|.|||+++.+.+.++|. .+.+|++........ +.++|..|||+|++.+......++-++.+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 689999999999999999999999998 678899988765443 238999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
||+...-.+.+...|...+.... .++|++++|||.|..+.. .......+....++++++.|++++.|.+.-|-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchH
Confidence 99998889999999999988765 479999999999987542 22333444555678899999999999999999
Q ss_pred HHHHHHhhc
Q 029675 172 WLSNNIASK 180 (189)
Q Consensus 172 ~l~~~~~~~ 180 (189)
++.+++.-.
T Consensus 163 ~LarKl~G~ 171 (216)
T KOG0096|consen 163 WLARKLTGD 171 (216)
T ss_pred HHhhhhcCC
Confidence 999987654
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=1.6e-19 Score=129.32 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=93.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--cc--------------------------------ccCCcCceEEEEEEcCEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYKNISFT 64 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (189)
||+++|++|+|||||+++|+...- .. ...|.+.....+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999965321 10 11133444445666778999
Q ss_pred EEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 029675 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEITDK 142 (189)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~ 142 (189)
+|||||+++|.......++.+|++++|+|+.+... ........+.... ...++++++||+|+.+... ...+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666777889999999999976432 1111122222221 2345788999999865321 1122211
Q ss_pred hCC--ccccCcceEEEEcccCCCCChHHHH
Q 029675 143 LGL--HSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 143 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
... ..+......++.+||++|.|+.+..
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 110 0011112468899999999998543
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=8.4e-19 Score=134.17 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=115.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--ccc--CCcCceEEEEEEcCEEEEEEEcCCCCCchhc-----------hhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPL-----------WRH 80 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (189)
..+||+++|.|++|||||+|++++++.. +.. .|.+.....+++++.++.++||+|-.+-... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4599999999999999999999998854 333 3555656677788999999999994322111 334
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCccccCcceEEEEc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
.+..+|++++|+|...+ +......+..++.+ .+.+++++.||+|+.+. ...++....+...+-.-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 55689999999999765 45555556666665 68999999999998765 3444444433322111122367789
Q ss_pred ccCCCCChHHHHHHHHHHHhhc
Q 029675 159 CATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
||++|.++.++++.+.+...+.
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999887665443
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=1.2e-19 Score=141.73 Aligned_cols=159 Identities=19% Similarity=0.108 Sum_probs=103.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc------cCCcCceEEEE--------------------EE------cCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVETV--------------------EY------KNIS 62 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~------~~t~~~~~~~~--------------------~~------~~~~ 62 (189)
+..++|+++|++++|||||++.|.+...... .-|+...+..+ +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999975422111 01221111110 00 1468
Q ss_pred EEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 029675 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE 138 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~ 138 (189)
+.+|||||++.|...+......+|++++|+|+++..........+. .+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888889999999999986421111122222 22221 23578999999999764322 22
Q ss_pred HHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
+...+... ...++.++++||++|+|++++++.+...+.
T Consensus 159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22211110 112467899999999999999999987654
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=5.9e-19 Score=142.73 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcccc-------------cCCcCce----EEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVTT-------------IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
.+-.+|+++|+.++|||||+++|+. +.+... ..+.++. ...+.+++.++++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 4567999999999999999999986 223211 1223332 34566788999999999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc--cC
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL--RQ 150 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~ 150 (189)
..+..+++.+|++++|+|+.+.... .....+..... .+.|.++++||+|+.+... .+++...+..... .+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999764322 22333443333 4688899999999875432 2333333321111 22
Q ss_pred cceEEEEcccCCCC----------ChHHHHHHHHHHHh
Q 029675 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNIA 178 (189)
Q Consensus 151 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 178 (189)
..++++.+||++|. |+..+++.+++.+-
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45678999999998 57777777776654
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=1e-18 Score=144.93 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=104.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchhc----------hhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL----------WRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (189)
+.++|+++|+||+|||||+|++.+.... .+.+ |.+.....+..++..+.+|||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4679999999999999999999886543 2233 344444556677889999999998766431 12232
Q ss_pred --cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCccccCcceEEE
Q 029675 83 --QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 156 (189)
..+|++++|+|.++.+. ...++.+... .+.|+++++||+|+.+... .+++.+.+ +++++
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L--------G~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL--------GCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh--------CCCEE
Confidence 47999999999987543 2233444332 4799999999999864322 22333333 34588
Q ss_pred EcccCCCCChHHHHHHHHHHH
Q 029675 157 STCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++|+++++|++++.+.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999887764
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.1e-18 Score=141.25 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=103.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccC-----CcCceEEEEEE------cC-----E-----EEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY------KN-----I-----SFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~ 73 (189)
.+.-.|+++|++++|||||+++|.+..+....+ +++..+..... .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456689999999999999999998766543322 33332221111 00 1 278999999999
Q ss_pred chhchhhhccCCCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------A 136 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~ 136 (189)
|..++...++.+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 99998888899999999999986 33333221 2222 4789999999999852110 0
Q ss_pred hH-----------HHhhhCCcccc----------CcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 137 AE-----------ITDKLGLHSLR----------QRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 137 ~~-----------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.. +...+....+. ...+.++++||++|+|++++++.+...+
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 10 11111111111 1356899999999999999998876543
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=5.2e-19 Score=138.13 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=102.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc------ccCCcCceEEEEEE------------------c--------CE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETVEY------------------K--------NI 61 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~~~------------------~--------~~ 61 (189)
....++|+++|+.++|||||+..|.+..... ...|....+....+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3567999999999999999999996532111 11122221111000 0 25
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA---- 137 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---- 137 (189)
.+.+|||||+++|..........+|++++|+|+.++..-......+..+ ... ...|+++++||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988777666677789999999998642111111122221 111 234689999999997643321
Q ss_pred HHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
++...+... ....+.++++||++|+|++++++.+.+.+..
T Consensus 163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222221110 1124578999999999999999999887643
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=2.9e-19 Score=128.94 Aligned_cols=146 Identities=20% Similarity=0.196 Sum_probs=96.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---------------------------cccc-------cCCcCceEEEEEEcCEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---------------------------IVTT-------IPTIGFNVETVEYKNISFT 64 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---------------------------~~~~-------~~t~~~~~~~~~~~~~~~~ 64 (189)
+|+++|++++|||||+.+|+... +... ..|.+.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999985321 0000 1134444556777889999
Q ss_pred EEEcCCCCCchhchhhhccCCCEEEEEEECCCccc---H---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----C
Q 029675 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M 134 (189)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~ 134 (189)
+|||||+..+...+...++.+|++++|+|+++... | ......+. ..... ..+|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777889999999999987420 1 11112222 22221 24789999999999742 1
Q ss_pred CHhHHHhhh----CCccccCcceEEEEcccCCCCChH
Q 029675 135 NAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 135 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
..+++...+ .........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 123333322 222222345789999999999987
No 212
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.9e-19 Score=119.47 Aligned_cols=161 Identities=32% Similarity=0.584 Sum_probs=130.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEEC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
.+.=|+++.|-.|+|||||++.|-.++.....||.-..-.++.+.+.+|+-+|.+|+...+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 45679999999999999999999887765544544444445788999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc------------ccCcceEEEEcccCC
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCATS 162 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 162 (189)
.+.+.|.+.+..+..++......+.|+++.+||.|.......+++...+++.. ...+.+..+.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 99999999999888888876668999999999999988776666655443211 122456778899888
Q ss_pred CCChHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSN 175 (189)
Q Consensus 163 ~~~i~~~~~~l~~ 175 (189)
+.|--+.|.|+..
T Consensus 178 ~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQ 190 (193)
T ss_pred cCccceeeeehhh
Confidence 8887777777654
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=1.9e-18 Score=122.14 Aligned_cols=146 Identities=18% Similarity=0.108 Sum_probs=96.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC--------c----cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE--------I----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~--------~----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
.++|+++|++++|||||+++|++.. . .+ ...|.+.....+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999997531 0 00 011333333445556788999999999888877
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccccCc
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRQR 151 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~ 151 (189)
....+..+|++++|+|+...- ......+...+.. .+.| +++++||+|+....+ .+ ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 777888999999999997532 2222222233332 3555 789999999864322 12 22233222222234
Q ss_pred ceEEEEcccCCCCChH
Q 029675 152 HWYIQSTCATSGEGLY 167 (189)
Q Consensus 152 ~~~~~~~Sa~~~~~i~ 167 (189)
.++++.+||++|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 5789999999999864
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=9.3e-19 Score=142.27 Aligned_cols=156 Identities=19% Similarity=0.103 Sum_probs=104.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC---ccc---ccCCcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE---IVT---TIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~---~~~---~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
-|+++|++++|||||+++|.+.. +.. ...|++..+..+.. .+..+.+|||||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998643 221 13355554444443 346789999999999988777888999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCcc--ccCcceEEEEcccCCCCChHH
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNAAEITDKLGLHS--LRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+|+++.. .........++.. .+.| +++|+||+|+.+....+.+........ ......+++++||++|.|+++
T Consensus 82 Vda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9987632 1111122223332 2344 689999999976433333222221110 001134689999999999999
Q ss_pred HHHHHHHHHhh
Q 029675 169 GLDWLSNNIAS 179 (189)
Q Consensus 169 ~~~~l~~~~~~ 179 (189)
+++.+.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999875543
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=4.1e-18 Score=117.77 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=110.1
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc-c--cccC--CcCceEEEEEEcCEEEEEEEcCCC----------CC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIP--TIGFNVETVEYKNISFTVWDVGGQ----------DK 73 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~-~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~----------~~ 73 (189)
+.+.++....-|+++|.+|+|||||||+|.+++- . +..| |.-.++..+... +.+.|.||. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 3556777888999999999999999999999762 3 3333 444444444332 899999993 34
Q ss_pred chhchhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCc
Q 029675 74 IRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITDKLGLH 146 (189)
Q Consensus 74 ~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~ 146 (189)
+..+...|++ +..++++++|+..+ ....+..+.+++.. .++|+++++||+|.....+. ..+.+.+...
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 4555556665 36788889998543 34444455555555 68999999999998765433 3333333333
Q ss_pred cccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
...... ++-.|+..+.|++++...|.+.+..
T Consensus 168 ~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQW--VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccce--EEEEecccccCHHHHHHHHHHHhhc
Confidence 222111 6678999999999999998887654
No 216
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=6.9e-19 Score=116.46 Aligned_cols=134 Identities=23% Similarity=0.298 Sum_probs=93.7
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC----CchhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
||+++|+.|+|||||+++|.+... .+..|..+. +.+ .++||||.. .+.........++|++++|.|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~-----~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIE-----YYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeE-----ecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999988654 333333332 221 359999953 3333344455689999999999
Q ss_pred CCccc-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 95 NDRDR-VVEARDELHRMLNEDELRDAVLLVFANKQDLP-NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
+++.+ |.. .+... .+.|+|-|+||+|+. +..+.+...+.+...+.+ ..|++|+.+|+|++++.++
T Consensus 74 t~~~~~~pP---~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 74 TEPRSVFPP---GFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCccCCc---hhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 87643 222 12222 368999999999998 444555555555554443 3579999999999999998
Q ss_pred HH
Q 029675 173 LS 174 (189)
Q Consensus 173 l~ 174 (189)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=1.9e-18 Score=119.31 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=94.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceE--EEEEEcCEEEEEEEcCCCCC----------chhchhhhcc--
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDK----------IRPLWRHYFQ-- 83 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~-- 83 (189)
.|+++|++|+|||||++++.++.+. ...++.+... ..+..+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965543 2333333222 2222233 899999999543 2233333333
Q ss_pred -CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc-cCcceEEEEcccC
Q 029675 84 -NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCAT 161 (189)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (189)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+.................. ......++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 4678999999875532211 112223332 35889999999998654333322222211100 1233468899999
Q ss_pred CCCChHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNN 176 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (189)
++.|++++++++.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
No 218
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.79 E-value=2.4e-20 Score=125.95 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=129.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEE----EEEEcC-EEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
++++|+|..++|||+++.+++.+.|. -+..|++.++. .++... +++++||.+||+++..+...+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 89999999999999999999998887 56778887653 222222 5789999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCC---CCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccccCcceEEEEcccCCCCC
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDEL---RDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
||+++.-+|+....|..++-....+ ...|+++..||||...... .+.+........+. ..+++|++.+.+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~----gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE----GWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc----ceeeeccccccC
Confidence 9999999999999888877654333 4588999999999754321 12222222222222 477999999999
Q ss_pred hHHHHHHHHHHHhhccccCccC
Q 029675 166 LYEGLDWLSNNIASKVSSLTSS 187 (189)
Q Consensus 166 i~~~~~~l~~~~~~~~~~~~~~ 187 (189)
+.|+...+++.++-.-.+..++
T Consensus 182 i~Ea~r~lVe~~lvnd~q~~~s 203 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQPIKS 203 (229)
T ss_pred hhHHHHHHHHHHHhhccCCccc
Confidence 9999999999998776544443
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=4.2e-18 Score=122.88 Aligned_cols=151 Identities=25% Similarity=0.250 Sum_probs=98.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCccccc-----------------CC-------cCceE-----------------EEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-----------------PT-------IGFNV-----------------ETVE 57 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~-----------------~t-------~~~~~-----------------~~~~ 57 (189)
||+++|+.++|||||+.+|..+.+.... .| .+++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999865432100 01 11110 1123
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..+..+.++||||+++|.......+. .+|++++|+|+.... ......+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 34678999999999988766555554 699999999987543 2332333333333 4688999999999865433
Q ss_pred HhH----HHhhhCCccc---------------------cCcceEEEEcccCCCCChHHHHHHHH
Q 029675 136 AAE----ITDKLGLHSL---------------------RQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 136 ~~~----~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
..+ +...+..... ....++++.+|+.+|+|++++...|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 322 2233321111 12334789999999999999987764
No 220
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=3.7e-18 Score=122.74 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=108.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc----cccCCcCceEEEEEE-cCEEEEEEEcCCCCCchh-----chhhhccCCCEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGL 88 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~ 88 (189)
||+++|+.++||||+...+.++..+ ...+|..+....+.. ....+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999998888766543 336888888888875 457999999999975544 367788999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHh----hhCCccc--cCcceEEEEccc
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNE--DELRDAVLLVFANKQDLPNAMNAAEITD----KLGLHSL--RQRHWYIQSTCA 160 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa 160 (189)
|||+|+.+.+ +.....++...+.. ...++..+.+.++|+|+..+....++.+ ....... ....+.|+.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999997433 44444444443332 2237899999999999876533222221 1111101 111478999999
Q ss_pred CCCCChHHHHHHHHHHHhhccccCcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~~ 186 (189)
.+ +++-+++..++..+..+.+.+.+
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 99 68999999999999888766554
No 221
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.1e-17 Score=114.42 Aligned_cols=162 Identities=25% Similarity=0.381 Sum_probs=123.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhcc---CCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i~ 90 (189)
..+.-.|+++|+.++|||+|+.+|..+.+..+.++...+...+..++...+++|.||+++.+.-...++. .+.++++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3445689999999999999999999998877777788888888888888999999999999888877777 7999999
Q ss_pred EEECC-CcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------
Q 029675 91 VVDSN-DRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAMNAAEITDKLG----------------------- 144 (189)
Q Consensus 91 v~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----------------------- 144 (189)
|+|.. .........+.+-.++... ....+|++++.||.|+......+.+.+++.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99986 3444555556666666544 235799999999999876544333332211
Q ss_pred ------------CccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 145 ------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 145 ------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
...+....+.|.++|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111225678999999998 899999998765
No 222
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1.8e-18 Score=134.94 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceE---EEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 90 (189)
..+.+||+++|+.|+||||||-.++..+++...|..-..+ ..+.-+.+..++.|++..+.-+......++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4678999999999999999999999999886655322111 2222345669999999877777777778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCccccCcceEEEEcccCC
Q 029675 91 VVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNA--AE----ITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
||+.+++++++.+...|...+++... .+.|+|+||||+|....... +. +..++... + .+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei--E----tciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI--E----TCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH--H----HHHhhhhhh
Confidence 99999999999999999998887542 47999999999998754332 22 22222221 1 478999999
Q ss_pred CCChHHHHHHHHHHHhhccccC
Q 029675 163 GEGLYEGLDWLSNNIASKVSSL 184 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~~~~~~~~ 184 (189)
..++.++|....+.+......+
T Consensus 160 ~~n~~e~fYyaqKaVihPt~PL 181 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVIHPTSPL 181 (625)
T ss_pred hhhhHhhhhhhhheeeccCccc
Confidence 9999999999988887665443
No 223
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=2.4e-17 Score=121.92 Aligned_cols=124 Identities=21% Similarity=0.256 Sum_probs=87.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC--cc----------------cc-------cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE--IV----------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~--~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
..+|+++|++|+|||||+++|+... .. +. ..++......+.+.+.++++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3689999999999999999997421 00 00 11223334567788999999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGL 145 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~ 145 (189)
.+|.......++.+|++|+|+|+++.... ....++. .... .++|+++++||+|+.+... .+++.+.++.
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 99888777788999999999999764321 2223333 3322 4789999999999866543 3455555543
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=7.9e-18 Score=131.09 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=102.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
.+..++|+++|++++|||||+++|++... . ....|.+.....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999976210 0 0111333333344446678999999999988
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+.+...- .....+. ++.. .++| +++++||+|+.+..+. + ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~-~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHIL-LARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHH-HHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77777777889999999998753221 1122222 2222 3566 6789999998743221 1 22222222222
Q ss_pred cCcceEEEEcccCCCC--------ChHHHHHHHHHHH
Q 029675 149 RQRHWYIQSTCATSGE--------GLYEGLDWLSNNI 177 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~ 177 (189)
....++++.+||++|. ++.++++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2234678999999983 4666666666554
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=2.9e-17 Score=121.57 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=80.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC--c------------cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE--I------------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~--~------------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++++|||||+++|+... . .+ ...|+......+.+++..+.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996311 0 00 012444455667788999999999999988888
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+...++.+|++++|+|..+...-. ....+.... . .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~-~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD-R---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH-H---cCCCEEEEEECCCCCC
Confidence 899999999999999997643221 122333332 2 4689999999999864
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=4.5e-17 Score=121.02 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=81.1
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-----c----------------ccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-----T----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-----~----------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (189)
+|+++|++|+|||||+++++...-. . ...+.......+.+.+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743211 0 012334444567778899999999999888888
Q ss_pred hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+++.+|++++|+|+++...... ...|.... . .+.|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~-~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD-E---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCccCCC
Confidence 8888999999999999987554432 22233322 2 46899999999998753
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.2e-17 Score=130.23 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=100.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC-------Cc-----cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG-------EI-----VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~-------~~-----~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
+..++|+++|++++|||||+++|++. .+ .. ..-|.+.....+..++..+.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 55699999999999999999999862 11 00 0113333333344466789999999998887
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCcccc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (189)
......+..+|++++|+|+.+...- .....+.. +.. .++|.+ +++||+|+.+..+ .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~-~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHH-HHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7777778899999999999763221 11222322 222 356755 6899999974322 12 222222211111
Q ss_pred CcceEEEEcccCCCC----------ChHHHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 177 (189)
...++++.+|+.+|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 234788999999984 5666666666543
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.3e-17 Score=126.30 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccC---CcCceEEEEEEc---CEEEEEEEcCCCCCchhchhhhccCCCEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (189)
+..-|.++|+...|||||++.+.........+ |..+--+++... .-.+.++|||||+-|..++.....-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999999887765433 322333444443 358999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccc----cCcceEEEEcccCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (189)
+|+++++.-..+.. .-...++. .+.|++++.||+|..+ .++..+..++....+ ......++++||++|+|
T Consensus 84 LVVa~dDGv~pQTi--EAI~hak~---a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTI--EAINHAKA---AGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHH--HHHHHHHH---CCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99999864222221 12222222 6899999999999984 344554444443333 23557899999999999
Q ss_pred hHHHHHHHHHHH
Q 029675 166 LYEGLDWLSNNI 177 (189)
Q Consensus 166 i~~~~~~l~~~~ 177 (189)
++++++.+.-+.
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 229
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=4.8e-17 Score=116.95 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=77.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc------------------cC----CcCceEEEEE-----EcCEEEEEEEcCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT------------------IP----TIGFNVETVE-----YKNISFTVWDVGGQ 71 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~------------------~~----t~~~~~~~~~-----~~~~~~~i~D~~g~ 71 (189)
+|+++|++++|||||+++|+....... .. +.......+. ...+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432211 00 1111112222 23478999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.++......++..+|++++|+|+.+..++.. ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888889999999999999987655432 233333322 358999999999975
No 230
>PRK13351 elongation factor G; Reviewed
Probab=99.74 E-value=6.3e-17 Score=134.19 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=89.5
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--------------cc-------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+..+|+++|+.++|||||+++|+... .. ....|+......+.+.+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3567899999999999999999997521 00 12335566666788889999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
++...+..+++.+|++++|+|.++....+.. ..|..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 9999999999999999999999876655443 33333322 47899999999998754
No 231
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=3e-17 Score=119.48 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=107.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccc---cCCcC-ceEEEEEEcCEEEEEEEcCCCCC------------chhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG-FNVETVEYKNISFTVWDVGGQDK------------IRPL 77 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~D~~g~~~------------~~~~ 77 (189)
..+.++|+|+|.||+|||||.|.+++.+.... ..|+. .....+.-+...+.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 46789999999999999999999999986632 33333 33344556788999999999321 1111
Q ss_pred hhhhccCCCEEEEEEECCCcccHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------CC--HhH
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA---------------MN--AAE 138 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~--~~~ 138 (189)
....+.++|.++.|+|+++...... ....+..+ .++|-+++.||.|.... .. ..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2334568999999999986432221 12223333 46888999999996532 01 223
Q ss_pred HHhhhCCccc-----cCcce----EEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 139 ITDKLGLHSL-----RQRHW----YIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 139 ~~~~~~~~~~-----~~~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+.+.+...-. ..+++ .+|.+||+.|+||+++.+++..++...-+
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 3333321110 00122 47889999999999999999988766543
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=7.4e-17 Score=118.66 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=114.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcCEEEEEEEcCCCCC--ch------hc-hhhhcc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK--IR------PL-WRHYFQ 83 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~--~~------~~-~~~~~~ 83 (189)
.-..|+|.|.||+|||||++++.+.+.. .+ ..|-++.+.++..+...+|++||||--+ .. .. ..+.-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4588999999999999999999988754 33 4477888889999999999999999321 11 11 222223
Q ss_pred CCCEEEEEEECCCcc--cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 84 NTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
-.++++|++|++..+ +.+.....|.++-.. .+.|+++|.||.|..+....+++.......... ....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceeee
Confidence 488999999998654 556666666666554 458999999999999776666655443332221 24468888
Q ss_pred CCCChHHHHHHHHHHHhhc
Q 029675 162 SGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~~~~~ 180 (189)
.+.+++.+.+.+...+.+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 9999998888887775544
No 233
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.74 E-value=6e-18 Score=116.81 Aligned_cols=124 Identities=28% Similarity=0.452 Sum_probs=79.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE---cCEEEEEEEcCCCCCchhchhhh---ccCCCEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHY---FQNTQGLI 89 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i 89 (189)
+.-.|+++|++|+|||+|+.+|..+....+..+...+. .+.. .+..+.++|+||+++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34578999999999999999999997765555543333 2222 34589999999999988765554 78899999
Q ss_pred EEEECCC-cccHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHH
Q 029675 90 FVVDSND-RDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEIT 140 (189)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~ 140 (189)
||+|.+. +..+....+.+..++.... ...+|++++.||.|+........+.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik 134 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIK 134 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHH
Confidence 9999873 4456666666666555321 2579999999999998755444443
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=2.8e-17 Score=116.75 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=96.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcCce-----EEEEEEc-CEEEEEEEcCCCCCchhchh-----hhccC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-----VETVEYK-NISFTVWDVGGQDKIRPLWR-----HYFQN 84 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~~~-----~~~~~~~-~~~~~i~D~~g~~~~~~~~~-----~~~~~ 84 (189)
+++|+++|++|+|||||+|.+.+..... ..++++.. ...+... ...+.+|||||......... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 22222211 1111111 23789999999754322222 22567
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccc---c---
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSL---R--- 149 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~---~--- 149 (189)
+|++++|.+ ..+......+...+.. ...|+++|+||+|+..... .+++.+.+..... .
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 899888843 2345555555555554 3678999999999843211 1222221111111 0
Q ss_pred CcceEEEEcccC--CCCChHHHHHHHHHHHhhc
Q 029675 150 QRHWYIQSTCAT--SGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~ 180 (189)
.....++-+|+. .+.++..+.+.+...+-+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 122357789988 5789999999999888754
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=9.7e-17 Score=125.12 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=93.7
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------------ccc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
.++.++|+++|+.++|||||+++|++.. ..+ ...|.+.....+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4667999999999999999999997420 000 112444444445456678999999999998
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
..........+|++++|+|+.+....+ ....+..+ .. .++|. ++++||+|+.+..+ .+ ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 877777778899999999997632221 12222222 22 24554 57899999875322 11 22222222222
Q ss_pred cCcceEEEEcccCCCC
Q 029675 149 RQRHWYIQSTCATSGE 164 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (189)
....++++.+|+.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2223678999999875
No 236
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.1e-16 Score=127.79 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=113.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC--CcCceEEEEEEcCEEEEEEEcCCCCCchh------chhhhc--cC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP------LWRHYF--QN 84 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (189)
+..+++++|+||+|||||+|++.+.... .+-| |.+.....+..++..+++.|.||-..... ....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 4567999999999999999999987644 5555 56666677888888999999999543322 223333 36
Q ss_pred CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCccccCcceEEEEccc
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+|+++.|+|+++.+ .......+++. .+.|++++.|+.|.... .+.+++.+.++.+ ++++||
T Consensus 82 ~D~ivnVvDAtnLe---RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP--------Vv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLE---RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP--------VVPTVA 146 (653)
T ss_pred CCEEEEEcccchHH---HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC--------EEEEEe
Confidence 89999999998743 33333334433 57899999999997543 4667788877764 889999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|+|++++...+.+....+.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999987655444
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=3.2e-16 Score=125.51 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=82.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcc----------------cc-------cCCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------------TT-------IPTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.+..+|+++|++++|||||+++|+. +... +. ..++......+.++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4568999999999999999999963 1110 00 012223334577788999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
|+.+|......+++.+|++|+|+|+.+.-.. ....++... .. .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCccccc
Confidence 9999988777888999999999999764322 223333332 22 57999999999998653
No 238
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=4.5e-17 Score=127.43 Aligned_cols=148 Identities=20% Similarity=0.140 Sum_probs=96.4
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-----------------c--ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-----------------T--TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-----------------~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
+...++|+++|++++|||||+++|++..-. + ...|.+.....+..++..+.++||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 456699999999999999999999864110 0 011223333344556778999999999888
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+...- .........++.. .++| +++++||+|+.+..+ .+ ++...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777777788999999999997532 2222222233332 3567 778999999975322 12 22233222222
Q ss_pred cCcceEEEEcccCCCCCh
Q 029675 149 RQRHWYIQSTCATSGEGL 166 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i 166 (189)
....++++.+|+.+|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 223468999999998743
No 239
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=2.8e-17 Score=129.42 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=101.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc---------------------------cc-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI---------------------------VT-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~ 59 (189)
.+..++|+++|+.++|||||+.+|+...- .+ ..-|++..+..+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999998863110 00 011444445556667
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHH-------HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV-------EARDELHRMLNEDELRDA-VLLVFANKQDLP 131 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~ 131 (189)
+..+.++|+||+++|.......++.+|++|+|+|+.+. .|+ .....+. +... .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 88999999999999999999999999999999999862 232 2222222 2222 345 578899999976
Q ss_pred CC----CCH----hHHHhhhCCccccCcceEEEEcccCCCCChHH
Q 029675 132 NA----MNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 132 ~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
+. ... +++...+....+....+.|+++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 112 22333332223333357899999999999854
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.72 E-value=5.1e-17 Score=126.97 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=94.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc--cc----------------------------------ccCCcCceEEEEEEcCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI--VT----------------------------------TIPTIGFNVETVEYKNI 61 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~--~~----------------------------------~~~t~~~~~~~~~~~~~ 61 (189)
++|+++|++++|||||+.+|+...- .. ...|++..+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999964220 00 00134444455666778
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI 139 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 139 (189)
.+.++||||+++|.......+..+|++++|+|+.....-+. .....+.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999987776777889999999999875422111 1111122221 2346899999999875321 1222
Q ss_pred HhhhCC--ccccCcceEEEEcccCCCCChHH
Q 029675 140 TDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
...+.. .......+.++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 00111245689999999999986
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=3.3e-17 Score=129.98 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=98.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc--cc------------c----------------------cCCcCceEEEEE
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPTIGFNVETVE 57 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~--~~------------~----------------------~~t~~~~~~~~~ 57 (189)
.+..++|+++|++++|||||+.+|+...- .. . ..|++..+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46679999999999999999999974321 00 0 012334444455
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN- 135 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 135 (189)
.++..+.++||||++.|.......+..+|++++|+|+...-.- +.....+...+ ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEEeeccccchhH
Confidence 6778999999999998876666667999999999998753211 11111111221 1257899999999874321
Q ss_pred -HhHHHhhhCC--cccc-CcceEEEEcccCCCCChHHHH
Q 029675 136 -AAEITDKLGL--HSLR-QRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
..++...+.. .... .....++++||++|.|+.++-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2333332211 0000 124678999999999998653
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=6e-17 Score=133.06 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=102.2
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCc--cc------------c----------------------cCC
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI--VT------------T----------------------IPT 48 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~--~~------------~----------------------~~t 48 (189)
+...+........++|+++|++++|||||+++|+...- .. . ..|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 34455666677889999999999999999999975321 10 0 012
Q ss_pred cCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
++..+..+..++..+.++||||++.|.......+..+|++++|+|+..... ........++... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSFIASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHHHHHHh--CCCeEEEEEEec
Confidence 333344555677889999999999887666667889999999999975321 1111111122211 236789999999
Q ss_pred CCCCCC--CHhHHHhhhCC--ccccCcceEEEEcccCCCCChHH
Q 029675 129 DLPNAM--NAAEITDKLGL--HSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 129 D~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
|+.+.. ..+++...+.. .........++.+||++|.|+.+
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 987522 12223222210 00011234688999999999984
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=1.3e-16 Score=124.31 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=100.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
+..++|+++|++++|||||+++|++... . ....|.+.....+..++..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999986210 0 01113333334444567789999999998887
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-Hh----HHHhhhCCcccc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMN-AA----EITDKLGLHSLR 149 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (189)
......+..+|++++|+|+.+.. ......+..++.. .+.|.+ +++||+|+.+..+ .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 77777788999999999997542 2222222233332 357765 6899999975322 11 222233222222
Q ss_pred CcceEEEEcccCCCC----------ChHHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGE----------GLYEGLDWLSNN 176 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 176 (189)
...++++.+||+++. ++..+++.+.+.
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 234678899999875 455555555543
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=8.1e-17 Score=127.44 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=97.3
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------cc---------c----ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------IV---------T----TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------~~---------~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
....++|+++|++++|||||+++|++.. .. . ...|.+.....+..++..+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4557999999999999999999998521 00 0 011333334445567789999999999999
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (189)
.......+..+|++++|+|+.+...- .....+.. +.. .++| +++++||+|+.+..+ .+ ++...+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~-~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILL-AKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHH-HHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 88878888899999999998754321 22233333 332 3566 788999999976322 22 22222222222
Q ss_pred cCcceEEEEcccCCCCC
Q 029675 149 RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (189)
....++++.+|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 33457889999988753
No 245
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=115.50 Aligned_cols=146 Identities=33% Similarity=0.454 Sum_probs=103.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cccccCCcCceEEEEEEcCE-EEEEEEcCCCCC-------chhchhhhcc
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNI-SFTVWDVGGQDK-------IRPLWRHYFQ 83 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~-------~~~~~~~~~~ 83 (189)
.+.++|-||+|||||++.+...+ |.+..|.++ ++.+++. .+.+-|.||--. ........+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 57899999999999999998765 334455555 4556554 499999999421 1112333456
Q ss_pred CCCEEEEEEECCCc---ccHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCCCC-CH-hHHHhhhCCccccCcceEEEE
Q 029675 84 NTQGLIFVVDSNDR---DRVVEARDELHRM-LNEDELRDAVLLVFANKQDLPNAM-NA-AEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 84 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 157 (189)
.|+.++||+|++.+ ..|+.....+.++ ..+..+.+.|.++|.||.|+.+.. +. +++.+.+... .+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEE
Confidence 79999999999987 6677666544443 334555789999999999996332 21 4444444332 5889
Q ss_pred cccCCCCChHHHHHHHHH
Q 029675 158 TCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~ 175 (189)
+||++++|++++++.+-+
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999887754
No 246
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=2.3e-16 Score=113.50 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=77.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCc--c----------cc-------cCCcCceEEEEEEc----------CEEEEEEEcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEI--V----------TT-------IPTIGFNVETVEYK----------NISFTVWDVG 69 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~--~----------~~-------~~t~~~~~~~~~~~----------~~~~~i~D~~ 69 (189)
+|+++|+.++|||||+++|+...- . +. ..|+......+.+. ++.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975321 0 00 01222222222222 6889999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
|+..|......+++.+|++++|+|+.+....+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654433 233333332 367899999999975
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1e-15 Score=99.68 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=70.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc--cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCc---------hhchhhhccCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI---------RPLWRHYFQNT 85 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~ 85 (189)
+|+++|.+|+|||||+|+|.+.... .. ..|....+..+...+..+.++||||-... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986432 22 23444445566778889999999996432 11133334789
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (189)
|++++|+|..++. ......+.+.++ .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999976631 222222322222 58999999998
No 248
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.6e-16 Score=121.56 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----------ccc---ccC----CcCceEEEEEEcC---EEEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IVT---TIP----TIGFNVETVEYKN---ISFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----------~~~---~~~----t~~~~~~~~~~~~---~~~~i~D~~g~~~ 73 (189)
.+-.++.+|.+...|||||.++|+... +.+ .+. |+......+-+.+ +.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 567899999999999999999996422 111 111 2222223344444 9999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
|.......+..|+++|+|+|++..-.-+.....+..+- .+..+|.|+||.|++... ++++..+.... +....-
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHHH-hcCCcc
Confidence 99998888899999999999986433333333333332 477899999999998653 33333322211 111222
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
.++.+||++|.|++++++.+++.+-..
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 577899999999999999998876543
No 249
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.4e-16 Score=121.76 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=117.7
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccccC---CcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEE
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (189)
...+.--|-++|+...|||||++.|.+..+..... |..+--+.+.. .+..++|.||||+.-|..|+.....-+|++
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34466778999999999999999999888764332 22222233333 557999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcccc----CcceEEEEcccCCCC
Q 029675 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----QRHWYIQSTCATSGE 164 (189)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 164 (189)
++|+..+|.-..+. .+.+++....+.|+++.+||+|.. ..+++.+..++....+. ..+.+++++||++|+
T Consensus 229 VLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 229 VLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999976422211 122222333789999999999976 44566666655444432 356899999999999
Q ss_pred ChHHHHHHHHHHHh
Q 029675 165 GLYEGLDWLSNNIA 178 (189)
Q Consensus 165 ~i~~~~~~l~~~~~ 178 (189)
|++.+-+.+.-++.
T Consensus 303 nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 303 NLDLLEEAILLLAE 316 (683)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999988765543
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=2.8e-16 Score=123.90 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=101.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--c-------------------------cc-------ccCCcCceEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------------VT-------TIPTIGFNVETVEYK 59 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~ 59 (189)
....++|+++|+.++|||||+.+|+... . .+ ...|++..+..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999986511 0 00 012444445556677
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RV---VEARDELHRMLNEDELRDAV-LLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 132 (189)
+..+.++||||+.+|.......+..+|++++|+|+.... .+ .....-+. ++.. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---cCCCeEEEEEEcccccc
Confidence 889999999999999888888889999999999997532 11 11122222 2222 3444 789999999532
Q ss_pred ----CCCHhHHH----hhhCCccccCcceEEEEcccCCCCChHH
Q 029675 133 ----AMNAAEIT----DKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (189)
Q Consensus 133 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (189)
....+++. ..+....+....++++.+|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12233333 3333333333457899999999999964
No 251
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=1e-15 Score=120.58 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=100.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC------Cc------cc-------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI------VT-------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
....++|+++|++++|||||+++|.+. .. .+ ...|++.....+..++..+.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456799999999999999999999632 10 00 112444444555556778999999999988
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHH----hhhCCccc
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSL 148 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~----~~~~~~~~ 148 (189)
.......+..+|++++|+|..+.. .........++.. .++| +++++||+|+.+... .+.+. ..+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 777666777899999999987542 2222223333333 4677 578999999975322 11122 22211112
Q ss_pred cCcceEEEEcccC---CCCC-------hHHHHHHHHHHH
Q 029675 149 RQRHWYIQSTCAT---SGEG-------LYEGLDWLSNNI 177 (189)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 177 (189)
....++++.+|+. +|.| +.++++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2234678888875 4555 566666665543
No 252
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.67 E-value=2e-15 Score=115.21 Aligned_cols=135 Identities=25% Similarity=0.394 Sum_probs=103.3
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....+..++..+.+||.+|+...+..|..++.+++++|+|+|+++. ..+......+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 355777777888899999999999999999999999999999999999863 3577778888888888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhCCccc--cCcceEEEEcccCCCCChHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA-----------------MNAAEITD----KLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~-----------------~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
.+.|+++++||.|+..+ .+.+.+.. .+....- ....+....|+|.+-.+++.+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 88999999999997531 11112111 1111111 1245667778999999999999998
Q ss_pred HHHHhhcc
Q 029675 174 SNNIASKV 181 (189)
Q Consensus 174 ~~~~~~~~ 181 (189)
.+.+.++.
T Consensus 330 ~~~I~~~~ 337 (342)
T smart00275 330 KDIILQRN 337 (342)
T ss_pred HHHHHHHH
Confidence 88887653
No 253
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.67 E-value=1.9e-15 Score=114.55 Aligned_cols=135 Identities=27% Similarity=0.413 Sum_probs=103.3
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....+..++..+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 456777777888899999999999999999999999999999999999874 4577777888888888777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHhHHHhhhCCccc-----cCcceEEEEcccCCCCChHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA------------------MNAAEITDKLGLHSL-----RQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (189)
.+.|+++++||.|+..+ .+.++....+...+. ....+....++|.+-++++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 88999999999996431 112222211111100 1245666779999999999999999
Q ss_pred HHHHhhcc
Q 029675 174 SNNIASKV 181 (189)
Q Consensus 174 ~~~~~~~~ 181 (189)
.+.+..+.
T Consensus 307 ~~~i~~~~ 314 (317)
T cd00066 307 KDIILQNN 314 (317)
T ss_pred HHHHHHHH
Confidence 98887653
No 254
>COG2262 HflX GTPases [General function prediction only]
Probab=99.66 E-value=7.9e-15 Score=111.08 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=112.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceEEEEEEc-CEEEEEEEcCCCC---------Cchhchhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~~~~~~ 81 (189)
+.-..|.++|-.|+|||||+|.|.+.... ....|.+.....+... +..+.+-||-|-- -|++... .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-E 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-H
Confidence 45588999999999999999999976643 2355666666667776 5789999999942 2333333 3
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCccccCcceEEEEccc
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
...+|+++.|+|+++|.- .........++.+.....+|+++|.||.|+..... ...+.... + ..+.+||
T Consensus 269 ~~~aDlllhVVDaSdp~~-~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA 338 (411)
T COG2262 269 VKEADLLLHVVDASDPEI-LEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISA 338 (411)
T ss_pred hhcCCEEEEEeecCChhH-HHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEe
Confidence 357999999999999853 44444455566655556799999999999775533 11111111 1 3567999
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
++|.|++.+.+.|.+.+....
T Consensus 339 ~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 339 KTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred ccCcCHHHHHHHHHHHhhhcc
Confidence 999999999999999887554
No 255
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.66 E-value=3.2e-15 Score=123.98 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=85.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--c------c------c-------ccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--I------V------T-------TIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--~------~------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+... . . + ...|+......+.+++..+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3456799999999999999999996421 1 0 0 1124445556677889999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
++.......++.+|++++|+|..+....+. ...+.. +.. .+.|+++++||+|+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~-~~~---~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQ-ANR---YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHH-HHH---cCCCEEEEEECCCCCCCC
Confidence 888888889999999999999986543332 233333 222 468999999999987643
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.66 E-value=1.1e-15 Score=120.23 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=102.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc------ccCCcCceEEEE-----------------EE-------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVETV-----------------EY------------- 58 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~-----------------~~------------- 58 (189)
...++|.++|+.++|||||+..|.+..... ..-|++.-+... ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 456899999999999999999998643211 011222111110 00
Q ss_pred ---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 59 ---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 59 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
....+.++|+||++.|.......+..+|++++|+|+.+.. ..+ ....+ .++... .-.++++++||+|+.+..
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~q-T~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQ-TSEHL-AAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchh-hHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence 0246899999999999888777888999999999998631 111 11222 222211 235689999999997643
Q ss_pred CHhHHHhhhCCc--cccCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 135 NAAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 135 ~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
..++...++... ......+.++.+||++|+|++++++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 322222221110 00123567999999999999999999887554
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.7e-16 Score=117.63 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=103.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC--c----------------------c---c-------ccCCcCceEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE--I----------------------V---T-------TIPTIGFNVETVEYKN 60 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~--~----------------------~---~-------~~~t~~~~~~~~~~~~ 60 (189)
..+++++|+|++++|||||+-+|+.+. + . + ..-|++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 467999999999999999998886421 0 0 0 0114445555566677
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--N 135 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 135 (189)
+.+.|+|+||+.+|-.........+|+.|+|+|..+.+ +|...-+..+.++....+.-..+||++||+|+.+.. .
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 89999999999999999888899999999999998653 111111111111111111245689999999998743 2
Q ss_pred HhHHHhhhC----CccccCcceEEEEcccCCCCChHHH
Q 029675 136 AAEITDKLG----LHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 136 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+++..... ...+...++.|+++|+..|.|+.+.
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 344443332 2222233578999999999998653
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=5.5e-15 Score=104.96 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh-------c----hhhh
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------L----WRHY 81 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~----~~~~ 81 (189)
++|+++|.+|+|||||+|++++...... ..|...........+..+.++||||-..... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998875421 2355555666667888999999999543311 1 1222
Q ss_pred ccCCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CccccCc--ceEE
Q 029675 82 FQNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLRQR--HWYI 155 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~--~~~~ 155 (189)
...+|++++|+++.+. .......+++...+... .-.+++++.|+.|.......++...... ....+.+ .+..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998752 12223334444443321 1257899999999765443333322111 0111111 1222
Q ss_pred EEc---ccCCCCChHHHHHHHHHHHhh
Q 029675 156 QST---CATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 156 ~~~---Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.- ++..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 222 246677899999988888776
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=107.05 Aligned_cols=152 Identities=22% Similarity=0.180 Sum_probs=103.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc--ccc-CCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQNT 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~ 85 (189)
-.-+++++|.|++|||||+++|.+.+.. ++. .|....-.-+.+++..+|+.|+||-- .......+..++|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 3468999999999999999999886522 222 22222223478899999999999731 1224466778999
Q ss_pred CEEEEEEECCCccc-HHHHHHHHHHH----------------------------------------hcCCC---------
Q 029675 86 QGLIFVVDSNDRDR-VVEARDELHRM----------------------------------------LNEDE--------- 115 (189)
Q Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~--------- 115 (189)
|++++|+|+..... .+-+...+... +.+..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999985543 33333322221 11100
Q ss_pred ---------------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 116 ---------------LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 116 ---------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
..-+|.+++.||.|+....+.+.+.+.. ..+.+||..+.|++++.+.+-+.+
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 0236789999999998754444444433 366799999999999999988775
No 260
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.7e-15 Score=115.14 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=110.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----------ccc---ccC----CcCceEEEEEE-----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----------IVT---TIP----TIGFNVETVEY-----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----------~~~---~~~----t~~~~~~~~~~-----~~~~~~i~D~~g~ 71 (189)
.+-.++.++.+-..|||||.+|++... +.+ ... |+...-.++.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 345788999999999999999997522 111 111 22222222222 4589999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSL 148 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~ 148 (189)
-+|.-.....+..|.++++|+|+++.-.-+.+.+.+..+- .+.-++-|+||.|++..+. ..++.+.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9998887777888999999999986543344444444442 3677899999999986543 3445555555533
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.+|||+|.||+++++.+++++-...
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 3567999999999999999998875443
No 261
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=4.4e-15 Score=112.03 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=54.2
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc-------cccCCcCceEEEE-------------------E-EcCEEEEEEEcCCC-
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV-------TTIPTIGFNVETV-------------------E-YKNISFTVWDVGGQ- 71 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g~- 71 (189)
|+++|.|++|||||+++|.+.... +..|+.+..+... + ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987632 2234444333211 1 13368999999997
Q ss_pred ---CCchhchhh---hccCCCEEEEEEECCC
Q 029675 72 ---DKIRPLWRH---YFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~~ 96 (189)
+.++.+... .++++|++++|+|...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444333 5889999999999973
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=5.9e-15 Score=118.30 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=81.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCcc----------------cc---c----CCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV----------------TT---I----PTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~~----------------~~---~----~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.+..+|+++|++++|||||+++|+. +... +. . .+.......+++.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 1110 00 0 11222334567788999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
|+.+|.......++.+|++|+|+|+.+. +......+...... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9998888777788999999999999763 22222222233333 4789999999999864
No 263
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.1e-14 Score=110.71 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=108.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCCCCC-c----hhc----hhhh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-I----RPL----WRHY 81 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~-~----~~~----~~~~ 81 (189)
+..++|+++|+||+|||||+|.|.+.... +..| |.+.....++..++++.+.||+|-.. - +.+ ...-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 56799999999999999999999998865 4333 55566677888999999999999543 1 111 2334
Q ss_pred ccCCCEEEEEEECCC--cccHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCC-CHhH----HHhhhCCcccc
Q 029675 82 FQNTQGLIFVVDSND--RDRVVEARDELHRMLN-----EDELRDAVLLVFANKQDLPNAM-NAAE----ITDKLGLHSLR 149 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~D~~~~~-~~~~----~~~~~~~~~~~ 149 (189)
+..+|++++|+|+.. -++-..+...+...-. ...+.+.|++++.||.|+.... +... ..+..+..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~--- 422 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRS--- 422 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCc---
Confidence 467999999999942 2222222222222211 1223458999999999987651 1111 11111111
Q ss_pred CcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
..-...++|+++++|++++.+.+.+.+.....
T Consensus 423 -~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 423 -VFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred -ccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 11134569999999999999999988877654
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=2e-14 Score=106.44 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=101.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC-------cccccCCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQN 84 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 84 (189)
.|.++|-|++|||||++.+...+ |.+..|..++... .....|.+-|.||-- .........+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 46799999999999999998755 3344555555222 345579999999832 122223344567
Q ss_pred CCEEEEEEECCCccc---HHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCccccCcceEEEE
Q 029675 85 TQGLIFVVDSNDRDR---VVE---ARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
|.+++.|+|++..+. .+. +...+..+ ...+.++|.++|+||+|+... ...+++...+...... ...++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~--~~~~~- 312 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW--EVFYL- 312 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC--Cccee-
Confidence 999999999985442 333 33333333 233468999999999996543 3444444444322111 11122
Q ss_pred cccCCCCChHHHHHHHHHHHhhcc
Q 029675 158 TCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+|+.+++|++++...+.+.+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999988887764
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=5.1e-14 Score=116.76 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred EcCCCCChHHHHHhHhcCCc--------------c-------cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhh
Q 029675 23 VGLDAAGKTTILYKLKLGEI--------------V-------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (189)
Q Consensus 23 iG~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (189)
+|++++|||||+++|+...- . ....|++.....+.+.++.+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999954210 0 01224555556777889999999999999888888888
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
++.+|++++|+|+++....... ..+..... .+.|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999876544332 33333322 46899999999998753
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=1.5e-14 Score=119.97 Aligned_cols=116 Identities=20% Similarity=0.115 Sum_probs=85.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC-----c---c-------------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----I---V-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+... . . ...-|+.....++.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3456789999999999999999996421 0 0 11125555567788889999999999998
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
.+...+...++.+|++++|+|..+.-.-+. ...+.. ... .+.|+++++||+|+.+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~-~~~---~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQ-ADK---YGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHH-HHH---cCCCEEEEEECCCCCCCC
Confidence 888888889999999999999876432221 222333 332 468899999999988643
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.59 E-value=1.3e-14 Score=107.91 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=70.8
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccc-----------cCCcCceEEE--EEEcC--EEEEEEEcCCCCCchh-----
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVET--VEYKN--ISFTVWDVGGQDKIRP----- 76 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~----- 76 (189)
.++|+++|++|+|||||+|+|.+..+... .+|....... +...+ .++.+|||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876422 2333333322 33333 6799999999432211
Q ss_pred ---------------------chhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 77 ---------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 77 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+...+. .+|+++|+++.+. ..+......+...+. ...|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0112222 4788888888764 223333222333333 25889999999998654
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=4.2e-14 Score=117.34 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=83.6
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc--CC------cc-------------cccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL--GE------IV-------------TTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~--~~------~~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|+++|++++|||||+++|+. +. .. ....|++.....+.+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567999999999999999999963 11 00 01124444456677889999999999998
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
+|.......++.+|++++|+|....-..+. ...+... .. .+.|+++++||+|+.+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~~---~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-DK---YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-HH---cCCCEEEEEECCCCCCCC
Confidence 887777778889999999999875422222 2223333 32 468899999999987644
No 269
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=8.4e-14 Score=118.06 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=92.1
Q ss_pred CChHHHHHhHhcCCcccccC---CcCceEEEEEEcC------------------EEEEEEEcCCCCCchhchhhhccCCC
Q 029675 28 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN------------------ISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (189)
Q Consensus 28 ~GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (189)
++||||++++.+.......+ |..+-...+.... -.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998877654322 3222223333221 12899999999999988888888999
Q ss_pred EEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhHHHhh-------
Q 029675 87 GLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--------------AAEITDK------- 142 (189)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~------- 142 (189)
++++|+|+++. .++..+ ..+.. .+.|+++++||+|+.+... .+...++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999762 222222 22232 3689999999999864211 0111111
Q ss_pred ----hCCccc----------cCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 143 ----LGLHSL----------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+....+ ....+.++++||++|+|++++.+.+....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111111 02456899999999999999998876543
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=111.63 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=110.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcCEEEEEEEcCCCCCc-----h--hc--hhhh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI-----R--PL--WRHY 81 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-----~--~~--~~~~ 81 (189)
..+.-.++++|-|++|||||++.+...... .+ .+|....+.++.+.-..+++.||||--+. . .+ ....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 456688999999999999999988776654 22 34556666677777789999999994221 0 01 2233
Q ss_pred ccCCCEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 82 FQNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.+-..+|+|++|++..+. .......+..+-.. ..+.|+|+|+||+|+....+..+-.+.+-.......++.++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 344667999999997664 44444444444222 26899999999999876654444333332222233446899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q 029675 160 ATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+.+||-++.....+.++.
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999998877776665544
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=8.2e-14 Score=100.56 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=105.8
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCccc---ccCCcCce-EEEEEEcCEEEEEEEcCCCCC-------chhchhh
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFN-VETVEYKNISFTVWDVGGQDK-------IRPLWRH 80 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~---~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 80 (189)
.....+++++++|..|+|||||||.|..+.... ...+.+.. +....++...+.+||+||-++ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 345688999999999999999999999655332 22222221 122334557899999999654 7777889
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhhC---C
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLG---L 145 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~---~ 145 (189)
++...|.++.+.+..++.--... ..+.+++... -+.++++++|.+|..... ..++..+... .
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999876421121 2233333322 348999999999975431 1111111111 0
Q ss_pred ccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
..+. .-.+++..+...+-|++++...++..+-.
T Consensus 191 ~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQ-EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHh-hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111 12245556778999999999999887653
No 272
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=1.3e-13 Score=103.88 Aligned_cols=135 Identities=24% Similarity=0.418 Sum_probs=102.5
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCccc----------HHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR----------VVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~ 116 (189)
+|+|+....+..++..+.++|++||...+.-|..++.+++++|+|+++++.+. ..+....+..+......
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 57788888999999999999999999999999999999999999999986442 33445677788888777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHhHHHhhhCCcc-----ccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNA-----------------MNAAEITDKLGLHS-----LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
.+.++|+++||.|+..+ ...++....+...+ .....+.+..+.|.+-.+|+.+|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 89999999999998642 11222222111111 111345566778999999999999999
Q ss_pred HHHhhcc
Q 029675 175 NNIASKV 181 (189)
Q Consensus 175 ~~~~~~~ 181 (189)
+.+....
T Consensus 341 d~Ii~~n 347 (354)
T KOG0082|consen 341 DTIIQNN 347 (354)
T ss_pred HHHHHHH
Confidence 9887653
No 273
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=5.6e-13 Score=103.54 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc--c-----cCCcCceEEEE-------------------E-EcCEEEEEEEcCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT--T-----IPTIGFNVETV-------------------E-YKNISFTVWDVGG 70 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~--~-----~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g 70 (189)
++|+++|.|++|||||+|+|.+..... + .|+.+...... + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876531 1 23333322100 0 1236789999999
Q ss_pred C----CCchhchhhh---ccCCCEEEEEEECC
Q 029675 71 Q----DKIRPLWRHY---FQNTQGLIFVVDSN 95 (189)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 95 (189)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3333333333 78999999999996
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.8e-13 Score=101.80 Aligned_cols=148 Identities=17% Similarity=0.115 Sum_probs=101.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------------------------------ccccCCcCceEEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------------------------------VTTIPTIGFNVETVEY 58 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------------------------------~~~~~t~~~~~~~~~~ 58 (189)
+..++++-+|...-||||||=||+.+.- .++.-|+++.|..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999976320 0112255666666666
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A 136 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 136 (189)
+..+|.+-||||++.|-+........||++|+++|+- ......-.....+..-. .-..+++..||+||.+..+ .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 8889999999999999999888889999999999983 33333322222222211 2355899999999987643 3
Q ss_pred hHHHhhhCCcccc---CcceEEEEcccCCCCChH
Q 029675 137 AEITDKLGLHSLR---QRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 137 ~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~ 167 (189)
+++...+. .++. -....+++.||..|.||-
T Consensus 160 ~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYL-AFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHH-HHHHHcCCCcceEEechhccCCccc
Confidence 33433322 1111 123479999999999975
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=8.2e-14 Score=116.01 Aligned_cols=113 Identities=21% Similarity=0.116 Sum_probs=79.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC---------------Cccc----ccCCcCceE----EEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG---------------EIVT----TIPTIGFNV----ETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~----~~~~~~~~~~~i~D~~g~ 71 (189)
.+..+|+++|+.++|||||+++|+.. .+.. ...|+.... ..+++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45589999999999999999999742 1111 112333322 224567789999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.+|.......++.+|++++|+|+.+.-..+. ...+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888889999999999999875322211 122322222 4567889999999864
No 276
>PRK13768 GTPase; Provisional
Probab=99.50 E-value=8.4e-14 Score=102.42 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=72.9
Q ss_pred EEEEEEEcCCCCCc---hhchhhhccC-----CCEEEEEEECCCcccHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..+.+||+||+.+. +..+..+++. ++++++|+|........... .++........ .+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 36899999997653 3333333332 89999999996543322222 22222111111 478999999999997
Q ss_pred CCCCHhHHHhhhCC--------c---------------ccc--CcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 132 NAMNAAEITDKLGL--------H---------------SLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
+..+.++....+.. . .++ .....++++|+++++|++++.+++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76554444333221 0 011 12246889999999999999999987763
No 277
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=9.1e-13 Score=105.66 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=71.3
Q ss_pred EEEEEEEcCCCCC-----chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 61 ISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 61 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..+.++||||-.. ........+..+|++++|+|....-+... ..+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999643 12234457889999999999976433222 23334333321 1359999999999864322
Q ss_pred --HhHHHhhhCCc--cccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 136 --AAEITDKLGLH--SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.+.+....... ........++++||+.|.|++++++.+.+.
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333332111 000112358899999999999999998773
No 278
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=3.2e-13 Score=103.68 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=111.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC--cccc-------------cCCcCceE----EEEEEcCEEEEEEEcCCCCCchh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~--~~~~-------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
+-.+|+++.+...|||||++.|+.+. |.+. ....++.+ ..+.++++.++|+||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999997654 2111 11223322 34778899999999999999999
Q ss_pred chhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---Cccc--cCc
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSL--RQR 151 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~--~~~ 151 (189)
.....+...|++++++|+.+.. ....+..+...+. .+.+.|+|+||.|..+....+-+.+.+. ...+ .+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999997533 2333444555554 3666799999999876544333333222 1112 345
Q ss_pred ceEEEEcccCCCC----------ChHHHHHHHHHHHhhcc
Q 029675 152 HWYIQSTCATSGE----------GLYEGLDWLSNNIASKV 181 (189)
Q Consensus 152 ~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 181 (189)
+++++..|+..|. ++..+|+.+++.+-...
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 6677788877643 57778887777665443
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=4.4e-14 Score=101.75 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=103.0
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCcccc--------cC---------CcCce----E----------------
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP---------TIGFN----V---------------- 53 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~--------~~---------t~~~~----~---------------- 53 (189)
+...+++.-|+|+|..|+|||||+.||...-.... .| .+++. |
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 45567789999999999999999999964211100 00 00000 0
Q ss_pred EE----------------EEEcCEEEEEEEcCCCCCc------hhchhh--hccCCCEEEEEEECCC---cccHHHHHHH
Q 029675 54 ET----------------VEYKNISFTVWDVGGQDKI------RPLWRH--YFQNTQGLIFVVDSND---RDRVVEARDE 106 (189)
Q Consensus 54 ~~----------------~~~~~~~~~i~D~~g~~~~------~~~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~ 106 (189)
.. -........++|||||-.. ...... .-...-+++||+|... +..|..-.-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00 0113356889999997421 111111 1124667889999753 4445444444
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH-------hhhCC--ccc-----c---------CcceEEEEcccCCC
Q 029675 107 LHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT-------DKLGL--HSL-----R---------QRHWYIQSTCATSG 163 (189)
Q Consensus 107 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-------~~~~~--~~~-----~---------~~~~~~~~~Sa~~~ 163 (189)
--.++.. .+.|++++.||+|+.+..-..++. +.+.. ... . -+++..+.+|+.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 4455555 789999999999998764333332 22221 000 0 14667889999999
Q ss_pred CChHHHHHHHHHHHhhcc
Q 029675 164 EGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 164 ~~i~~~~~~l~~~~~~~~ 181 (189)
.|.+++|..+-+.+-+..
T Consensus 250 ~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDEYE 267 (366)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999887776553
No 280
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.49 E-value=7.1e-14 Score=88.95 Aligned_cols=137 Identities=21% Similarity=0.221 Sum_probs=91.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCC----chhchhhhccCCCEEEEEEEC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~ 94 (189)
|++++|..|+|||||++++.|....- ..|..+ ++.+ =-.+||||..- +..-.......+|++++|-++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-ccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 78999999999999999998766331 122222 1111 12579999532 222234445689999999999
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
+++++.-. ..+..+ ...|+|-+++|.|+....+.+.....+...... ++|++|+.++.|++++++.+.
T Consensus 75 nd~~s~f~--p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESRFP--PGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAGAE----PIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCccccCC--cccccc------cccceEEEEecccccchHhHHHHHHHHHHcCCc----ceEEEeccCcccHHHHHHHHH
Confidence 98764321 122222 346699999999999755544444444333332 588999999999999999876
Q ss_pred H
Q 029675 175 N 175 (189)
Q Consensus 175 ~ 175 (189)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=1.7e-12 Score=96.59 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=73.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcC--ceEEEEEEcCEEEEEEEcCCCCCchhchh---hhc----
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPLWR---HYF---- 82 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~---- 82 (189)
..+.++|+++|.+|+||||++|++++.... +..++.+ .........+..+.++||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 356799999999999999999999988743 2222222 22233345788999999999765422211 111
Q ss_pred --cCCCEEEEEEECCC--cccH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 83 --QNTQGLIFVVDSND--RDRV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 83 --~~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
...|+++||.+++. .... ..+...+...+...- -.+++++.|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 26999999966542 2212 222333444443221 256899999999653
No 282
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.47 E-value=3.5e-13 Score=101.94 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=70.7
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-- 136 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 136 (189)
.+..+.++||+|...-... ....+|.+++|.++...+.++..... ++ ...-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 3578999999997633332 45679999999875545444443321 21 1223899999998754322
Q ss_pred --hHHHhhhCCcccc--CcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 137 --AEITDKLGLHSLR--QRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 137 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
.++...+...... ....+++.+||+++.|++++++.+.+.+....
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 2333333321111 11236888999999999999999998765433
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=2.1e-12 Score=94.59 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=76.5
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcccc----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh---c-------h
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP---L-------W 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~ 78 (189)
.....++|+++|.+|+|||||+|++.+...... ..|...........+..+.+|||||-..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345679999999999999999999999775321 2234444444556778999999999654421 1 1
Q ss_pred hhhcc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 79 RHYFQ--NTQGLIFVVDSNDRD-RVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 79 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
..++. ..|++++|..++... ... .+.+.+...+.... -.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 22332 578888887665321 222 23344444443221 2569999999997543
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=5.2e-13 Score=95.89 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=93.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-----cCCcCceEEEEEEcCEEEEEEEcCCCCCchh-------ch----hhh
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP-------LW----RHY 81 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~~~ 81 (189)
++|+++|..|+||||++|.+++...... ..|...........+..+.++||||-.+... .. ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999999875422 2355666666778899999999999422111 11 123
Q ss_pred ccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CccccCcceEEE
Q 029675 82 FQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG----LHSLRQRHWYIQ 156 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 156 (189)
....|++++|+...... .-.....++..++....+ ..++|+.|..|.......++..+... ....+.++-.|.
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 45799999999987321 123333455556554332 45888899998766655433332110 111111221232
Q ss_pred EcccC------CCCChHHHHHHHHHHHhhcc
Q 029675 157 STCAT------SGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 157 ~~Sa~------~~~~i~~~~~~l~~~~~~~~ 181 (189)
..+.+ ....+.++++.+-+.+.+.-
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 23333 33457777777776666553
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.45 E-value=3.2e-13 Score=98.23 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCchhchhhhc--------cCCCEEEEEEECCCccc---HHHH-HHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 62 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRDR---VVEA-RDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
.+.++|||||.++...+.... ...-++++++|.....+ |-.. ...+.-..+ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999987766655444 45668889999864333 3222 112222222 4799999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCccccCcce-EEEEcccCCCCChHHHHHHHHHHH
Q 029675 130 LPNAM---------N-----------AAEITDKLGLHSLRQRHW-YIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 130 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+.+.. + ...+...+.......... .++..|+.+++|+++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 97621 0 122222222111122233 789999999999999998876653
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=1.1e-12 Score=95.01 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=84.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
.....|+++|.+|+|||||++.+.+..-. ......+. +......+..+.++||||.. ..+ ....+.+|++++|+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEe
Confidence 45688999999999999999999865221 11111221 12233467789999999864 333 334578999999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-HhHHHhhhCCccc--cCcceEEEEcccCCCCC
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-AAEITDKLGLHSL--RQRHWYIQSTCATSGEG 165 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~ 165 (189)
........ ...+...+.. .+.| +++++||+|+.+... .+++...+..... ......++.+||+++..
T Consensus 113 a~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 113 ASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred cCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 87543222 2223333332 3456 456999999864322 2333322211111 01234678899888643
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.41 E-value=7.1e-12 Score=89.00 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=63.2
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhH
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE 138 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~ 138 (189)
....++++.|..-.....+. -+|.+|.|+|+.+.++... .....+ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 45667888884222222221 2688999999976544221 111111 1223899999999853 23333
Q ss_pred HHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhh
Q 029675 139 ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+..... ....+++++|+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33322221 124578899999999999999999977653
No 288
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.4e-12 Score=97.02 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=112.6
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc------cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
-|+-.|+-..|||||+..+.+.... ....|++..+...+.++..+.++|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4788999999999999999876533 1234777777778888889999999999999999888889999999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
+.++. .+........++... .....++|+||+|..++...++...+...... -....++.+|+++|+||+++.+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99642 222222222222221 12335999999999987544444433322222 23345789999999999999999
Q ss_pred HHHHHh
Q 029675 173 LSNNIA 178 (189)
Q Consensus 173 l~~~~~ 178 (189)
+.+.+-
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998883
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=3.2e-12 Score=107.92 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEEc----------CEEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEYK----------NISFTV 65 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~~----------~~~~~i 65 (189)
.+..+|+++|+.++|||||+++|+...- .+.. .|+......+.+. ++.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 5567999999999999999999976321 0100 1111111222332 578999
Q ss_pred EEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
+||||+.+|.......++.+|++|+|+|+.+.-..+ ....|..... .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888999999999999987642222 2233444433 468999999999986
No 290
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.39 E-value=4.8e-13 Score=87.82 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=77.9
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc-c-CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-I-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
+|++++|..|+|||+|+.++....+... . +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 5899999999999999999977766532 2 3333 3333455677899999999999
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChH
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (189)
+.+++... |...+... ...+.|.++++||.|+.+.. .+...... .++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHHH--------HHHHHhCCCcchhh
Confidence 88887655 44443332 22568899999999984321 12222221 35689999999985
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=2.2e-12 Score=109.10 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEE----------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY---------------- 58 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~---------------- 58 (189)
+.+-.+|+++|+.++|||||+++|+...- .+.. .|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45678999999999999999999975331 0100 122211122222
Q ss_pred cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+..++++||||+.+|.......++.+|++|+|+|+.+.-..+. ...|..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 26788999999999999988888999999999999875432222 233444443 478999999999987
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.7e-12 Score=100.97 Aligned_cols=157 Identities=21% Similarity=0.195 Sum_probs=104.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCC----------------------cc------c--cc--C--CcCceEEE
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------IV------T--TI--P--TIGFNVET 55 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~----------------------~~------~--~~--~--t~~~~~~~ 55 (189)
.+..+...+.++++|+.++|||||+-+++..- |. + .+ . |-++....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 34556678999999999999999998886421 00 0 00 1 11122233
Q ss_pred EEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHH------HHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA------RDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
++-....+.+.|+||+..|-.........+|+.++|+|.+-. .|+.- ......+++.. .-..++|++||+|
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD 326 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMD 326 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeeccc
Confidence 444667899999999999999988888999999999998732 23221 11222233222 2456899999999
Q ss_pred CCCCC--CHhHHHhhhC-----CccccCcceEEEEcccCCCCChHHH
Q 029675 130 LPNAM--NAAEITDKLG-----LHSLRQRHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 130 ~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (189)
..+.. ..+++...+. ...+....+.|++||..+|+|+-..
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 98764 3444444332 3334456678999999999997543
No 293
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-12 Score=92.39 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=102.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----cccccCCcCceEEEEEE-cCEEEEEEEcCCCCCchh-----chhhhccCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----LWRHYFQNT 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 85 (189)
...||+++|.+|+||||+=.-+..+. .....+|+++...++++ ++.-+.+||.+|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35799999999999998743333222 22345677887777776 447899999999984432 455678899
Q ss_pred CEEEEEEECCCcc---cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc---cccCcceEEEEcc
Q 029675 86 QGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---SLRQRHWYIQSTC 159 (189)
Q Consensus 86 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~S 159 (189)
+++|+|||++..+ .+......+..+++.. +...+....+|.|+......+.+-+..... ......+.++.+|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999997543 2233334444555433 667789999999998776544443322211 1123346677777
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 029675 160 ATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~~~~ 178 (189)
-.+ +.+-.++..+...+.
T Consensus 161 iwD-etl~KAWS~iv~~li 178 (295)
T KOG3886|consen 161 IWD-ETLYKAWSSIVYNLI 178 (295)
T ss_pred hhh-HHHHHHHHHHHHhhC
Confidence 665 334444444444433
No 294
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.37 E-value=2.8e-12 Score=92.54 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc--cccC---------------------CcCceEEEEEE--------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV--TTIP---------------------TIGFNVETVEY-------- 58 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~--~~~~---------------------t~~~~~~~~~~-------- 58 (189)
+.+.|.+.|+||+|||||++.|... +.. ...| ..+..+..+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 6799999999999999999988531 100 0001 11222222211
Q ss_pred ------------cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 029675 59 ------------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 59 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (189)
-++.+.++.|.|--..+.. ...-+|.+++|..+.-.+..+.++..+.++.. ++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEe
Confidence 2577888999874433332 34569999999999888888888887877754 89999
Q ss_pred CCCCCCCC-CHhHHHhhhCCccc--cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 127 KQDLPNAM-NAAEITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 127 K~D~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
|.|..... ...++...+.+..- .....+++.|||.+++|++++++.+.+.-.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99965432 23444444332211 123358999999999999999999887543
No 295
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.36 E-value=6.2e-12 Score=92.85 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEE----cCEEEEEEEcCCCCCchhchhhhccC----CCE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQN----TQG 87 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~----~d~ 87 (189)
..-+|+|+|+.++||||||.+|.+.+........++.|..+.. +...+.+|-..|+.....+....+.. --.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3468999999999999999999988744433444444433332 23578999999988777766655543 247
Q ss_pred EEEEEECCCcccHHHHHHHHHHHhcCC-----------------------------------------------------
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNED----------------------------------------------------- 114 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------------------------- 114 (189)
+|++.|.++|+.+-...+.|...+.+.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 889999999976655544333321100
Q ss_pred --------CCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 115 --------ELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 115 --------~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
.+-.+|++||.||||.....+ ...++..+ ..+.-..+...+.+|+++..|++-+..+|++++
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l-RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL-RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH-HHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 002467999999999854311 11112211 222334566788899999999999999999887
Q ss_pred hh
Q 029675 178 AS 179 (189)
Q Consensus 178 ~~ 179 (189)
+-
T Consensus 290 yG 291 (473)
T KOG3905|consen 290 YG 291 (473)
T ss_pred cC
Confidence 64
No 296
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.35 E-value=7.5e-12 Score=97.74 Aligned_cols=130 Identities=25% Similarity=0.422 Sum_probs=94.3
Q ss_pred CcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCC
Q 029675 48 TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDEL 116 (189)
Q Consensus 48 t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~ 116 (189)
|+|+....+.. .+..+.++|++|+...++-|..++.+++++|||+++++.+ .+.+....|..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 45777777888 8999999999999999999999999999999999986432 367777888899888777
Q ss_pred CCCeEEEEEeCCCCCCC--------------------CCHhHHHhhhC----CccccC---cceEEEEcccCCCCChHHH
Q 029675 117 RDAVLLVFANKQDLPNA--------------------MNAAEITDKLG----LHSLRQ---RHWYIQSTCATSGEGLYEG 169 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~--------------------~~~~~~~~~~~----~~~~~~---~~~~~~~~Sa~~~~~i~~~ 169 (189)
.+.|+++++||.|+..+ ...+.+...+. ...... ..+.+..|+|.+-++++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 89999999999996421 11122221111 111111 4456667888888888888
Q ss_pred HHHHHHHH
Q 029675 170 LDWLSNNI 177 (189)
Q Consensus 170 ~~~l~~~~ 177 (189)
|+.+.+.|
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 88877653
No 297
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.33 E-value=7e-12 Score=91.81 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=72.7
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCcccc
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLR 149 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (189)
+++..+.+.+++++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 677888888999999999999999877 88888887765432 579999999999996542211 122222 2
Q ss_pred CcceEEEEcccCCCCChHHHHHHHHH
Q 029675 150 QRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
..++.++++||++|+|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567899999999999999988764
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=2.8e-11 Score=92.48 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=82.3
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCC-----cCceEEEEEEcCE-EEEEEEcCCCCCchhchh-----h
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPT-----IGFNVETVEYKNI-SFTVWDVGGQDKIRPLWR-----H 80 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t-----~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~-----~ 80 (189)
..+.+++|+|+|.+|+|||||||.|.|-.-.+ .... +......+..... ++.+||.||......... .
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 45678999999999999999999997632211 0111 1122233444433 699999999543222222 2
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CC-------CCCHhHHHhh--------h
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL--PN-------AMNAAEITDK--------L 143 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~-------~~~~~~~~~~--------~ 143 (189)
-+...|.+|++.+- .|....-++...+.. .++|+.+|-||.|. .+ ....+++.+. +
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 34578988887663 466666667666666 58999999999995 11 1112222221 1
Q ss_pred CCccccCcceEEEEcccCC--CCChHHHHHHHHHHHhhc
Q 029675 144 GLHSLRQRHWYIQSTCATS--GEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~~~~~ 180 (189)
..... ...++|-+|+.+ ..+...+.+.+.+.+-..
T Consensus 184 ~k~gv--~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 184 QKAGV--SEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HCTT---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHcCC--CcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 11112 223556677665 456778888777765443
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.32 E-value=1.5e-11 Score=102.81 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=77.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc------------cccc-------CCcCceEEEEEE----cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY----KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~------------~~~~-------~t~~~~~~~~~~----~~~~~~i~D~~g~ 71 (189)
.+..+|+++|+.++|||||+++|+...- .+.. -|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4557899999999999999999975221 0000 122222222222 4678999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+|.......++.+|++++|+|+...-.. .....|..... .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988888889999999999998754222 22233333333 245779999999975
No 300
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.4e-11 Score=86.36 Aligned_cols=165 Identities=22% Similarity=0.295 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc----cccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc---hhhhccCCCEEEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL---WRHYFQNTQGLIF 90 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i~ 90 (189)
-+|+++|...+||||+..-......+ -..+|....-.++...-+.|++||.|||..+-.. ....++.+.++|+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 56999999999999997544433222 1233333333334444578999999998754332 5567889999999
Q ss_pred EEECCCcccHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC-C-------HhHHHhhhCCccccCcceEEEEccc
Q 029675 91 VVDSNDRDRVVEARDELHRMLNED--ELRDAVLLVFANKQDLPNAM-N-------AAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|+|+ .+.+.++...+...+.+. ..+++.+-|.+.|.|.-.+. . .+...+.+.-.....-++.|+-||-
T Consensus 108 vIDa--Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDA--QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEec--hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9998 444566655555554432 23678899999999964432 1 2222333333444456677888887
Q ss_pred CCCCChHHHHHHHHHHHhhccccCc
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLT 185 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~~~~~ 185 (189)
.+ .+|-|+|..+++++..+++.+.
T Consensus 186 yD-HSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhchhHH
Confidence 77 6799999999999998887654
No 301
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2e-11 Score=98.44 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-----ccCCcCceEEEEE----------------EcCEEEEEEEcCCCCCc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE----------------YKNISFTVWDVGGQDKI 74 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 74 (189)
+.--++|+|+..+|||-|+..+.+..+-. -...++-.|.-.. +.---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45568999999999999999997644321 1112222221111 11124789999999999
Q ss_pred hhchhhhccCCCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----C-C----------
Q 029675 75 RPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----M-N---------- 135 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~-~---------- 135 (189)
...+......||.+|+|+|+.. +.+++. +..+ +. .+.|+||.+||.|.--. . .
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH----HHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999964 333322 2222 22 58999999999995321 0 0
Q ss_pred --HhHHH-------hhhCCccc------c----CcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 136 --AAEIT-------DKLGLHSL------R----QRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 136 --~~~~~-------~~~~~~~~------~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
..++. -+++...+ . ..-+.+++|||.+|+||.+++-+|+++.-.++
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 11111 11111111 1 12357889999999999999999988765544
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.27 E-value=1.4e-10 Score=87.53 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.1
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (189)
++.+.++||+|.-... ......+|.++++......+.+... ...+ .++|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~---~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI---KAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH---HHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 2356678888888654433222222 2222 35667999999998765332211
Q ss_pred Hhhh--CCccc----cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 140 TDKL--GLHSL----RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 140 ~~~~--~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
...+ ..... ......++.+||++++|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111 00000 011224789999999999999999988643
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.27 E-value=3.8e-11 Score=85.95 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=85.9
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCCcc-------cccC----------CcCceEEEEE-----------------
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIP----------TIGFNVETVE----------------- 57 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-------~~~~----------t~~~~~~~~~----------------- 57 (189)
..+.....|+++|..|+|||||+++++..... .... ..+.....+.
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 44556788999999999999999998653100 0000 0111111110
Q ss_pred ---EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 58 ---YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 58 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
..+..+.+++|.|.-.... .+....+..+.|+|+.+.+.... . .... ...|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccc
Confidence 0134677888888211111 11123566677888865432111 1 1111 246679999999997542
Q ss_pred --CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 135 --NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
...++....... ....+++++||++|+|++++++++.+.
T Consensus 165 ~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 GFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 233333332211 123568999999999999999999875
No 304
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.3e-11 Score=90.57 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----cccc------cCCcCceEEEEEE---------cCEEEEEEEcCCCCCchh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----IVTT------IPTIGFNVETVEY---------KNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~~~~------~~t~~~~~~~~~~---------~~~~~~i~D~~g~~~~~~ 76 (189)
..+++.++|+.++|||||..++..-. |... .-|.+.-+.++.. +...+.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 35999999999999999999986422 2211 1133333333332 346789999999998888
Q ss_pred chhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhh--CCcccc
Q 029675 77 LWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----AAEITDKL--GLHSLR 149 (189)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~--~~~~~~ 149 (189)
......+-.|..++|+|+.... .-+.-.-.+-+++ -...++|+||.|+-.+.. .++..... .+....
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 7777778899999999996432 2111122233333 234688889998765422 22222211 111111
Q ss_pred C-cceEEEEcccCCC----CChHHHHHHHHHHHhhccc
Q 029675 150 Q-RHWYIQSTCATSG----EGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 150 ~-~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~ 182 (189)
. .+.+++++|++.| +++.++.+.+..++.+...
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 1 3357889999999 8888888888888776543
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.26 E-value=2.5e-10 Score=90.06 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=110.2
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCccc-ccCCcC----ceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCC
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 85 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (189)
+...++.+++.++|+.++|||.+++.|.++.+.. +..+.. ++...+......+.+.|.+.. ......... ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 3456778999999999999999999999977663 222222 222333344456777777764 222222222 669
Q ss_pred CEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCccccCcceEEEEccc
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-----MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
|++.++||++++.+|............. ...|+++|++|.|+... ..+.+++..+++. +.+..|+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~ 566 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISS 566 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeecc
Confidence 9999999999999998888766666554 68999999999998643 3457777777765 2334666
Q ss_pred CCCCChHHHHHHHHHHHhhcc
Q 029675 161 TSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~~~~~ 181 (189)
+.... .++|..|+..+.-..
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 64233 888888887765443
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.26 E-value=7.1e-11 Score=86.57 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=78.9
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhH
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAE 138 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~ 138 (189)
++.+.|+.|.|--..+. .....+|.+++|.-+.-.+..+..+..+.++.. ++|+||.|..... ...+
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHHH
Confidence 46688888887543333 234569999999998878888888888877754 8999999965432 2344
Q ss_pred HHhhhCCcc--cc--CcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 139 ITDKLGLHS--LR--QRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 139 ~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+...+.... .. ....+++.|||..|+|++++++.+.+...-...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 444444332 22 234478899999999999999999887654433
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.24 E-value=2.4e-10 Score=87.74 Aligned_cols=113 Identities=24% Similarity=0.246 Sum_probs=75.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC----Ccc-------------c-----ccCCcCceE---EEEEE-----cCEEEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG----EIV-------------T-----TIPTIGFNV---ETVEY-----KNISFT 64 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~----~~~-------------~-----~~~t~~~~~---~~~~~-----~~~~~~ 64 (189)
.-++-|.|+|+.++|||||+++|.+. ... + +..|++..+ .-+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999887 222 1 112444433 22222 236899
Q ss_pred EEEcCCCC--------Cchh---------------------chhhhcc-CCCEEEEEE-ECC----CcccHHHHHHHHHH
Q 029675 65 VWDVGGQD--------KIRP---------------------LWRHYFQ-NTQGLIFVV-DSN----DRDRVVEARDELHR 109 (189)
Q Consensus 65 i~D~~g~~--------~~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~ 109 (189)
++||+|.. +-.. -....++ ++++.|+|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999832 1111 0233445 899999999 764 23455666555555
Q ss_pred HhcCCCCCCCeEEEEEeCCCC
Q 029675 110 MLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 110 ~~~~~~~~~~p~ivv~nK~D~ 130 (189)
.++. .++|+++++||.|-
T Consensus 175 eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh---cCCCEEEEEECcCC
Confidence 5555 68999999999994
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.24 E-value=9.3e-11 Score=81.13 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCC----CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 61 ISFTVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 61 ~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
..+.++||||-. .....+..+++.+|++|+|.+.....+-.... .+.+.... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence 358899999953 34466788889999999999998754433333 34444443 234489999983
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.3e-10 Score=95.60 Aligned_cols=115 Identities=19% Similarity=0.145 Sum_probs=85.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC--------------cccc---cC----CcCceEEEEEEcC-EEEEEEEcCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT---IP----TIGFNVETVEYKN-ISFTVWDVGGQ 71 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~--------------~~~~---~~----t~~~~~~~~~~~~-~~~~i~D~~g~ 71 (189)
..+-.+|.++|+.++|||||..+++-.. +.+. .. |+.....++.+.+ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567899999999999999999996421 1111 11 2233334566774 99999999999
Q ss_pred CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
-+|.......++-+|+++.|+|+...-..+ ....|.+... .+.|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 999999999999999999999997543222 2234555544 58999999999997654
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5.7e-11 Score=90.92 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=92.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc--CCc------c----c-----------cc--CCcCceEEEEEEcCEEEEEEEcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL--GEI------V----T-----------TI--PTIGFNVETVEYKNISFTVWDVG 69 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~--~~~------~----~-----------~~--~t~~~~~~~~~~~~~~~~i~D~~ 69 (189)
.++...++|-+|.+|||||..+|+- +.+ . . .. -++...+.++++.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 4567789999999999999999853 111 0 0 00 12233456788899999999999
Q ss_pred CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCc
Q 029675 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH 146 (189)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~ 146 (189)
|+++|..-....+..+|.+++|+|+... ++..-..+.++.+. .++|++=++||.|...... .+++.+.+++.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 9999988888888889999999999753 34433445555554 6899999999999765433 45566666644
No 311
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=6.3e-11 Score=87.46 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=105.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc---cc-cC--CcCceE----------------EE----EEE------cCEE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV---TT-IP--TIGFNV----------------ET----VEY------KNIS 62 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~---~~-~~--t~~~~~----------------~~----~~~------~~~~ 62 (189)
+..++|.++|+...|||||...|.+--.. +. .. |+..-| +. -.. --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56799999999999999999998762211 00 00 000000 00 000 1146
Q ss_pred EEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHH--HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----H
Q 029675 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD--ELHRMLNEDELRDAVLLVFANKQDLPNAMN----A 136 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 136 (189)
+.+.|.||++-......+...--|++++|+..+.+..-....+ .-.+++. -..++++-||.|+.+... +
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-----ik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-----IKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-----cceEEEEecccceecHHHHHHHH
Confidence 8899999999887777766677899999999987543222222 2223333 345899999999987633 2
Q ss_pred hHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHHhhccc
Q 029675 137 AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 182 (189)
+++.+...-. -..+.+++.+||..+.||+.+++.+.+.+-....
T Consensus 163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 2232222211 1245678899999999999999999998866543
No 312
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.18 E-value=1.6e-10 Score=86.10 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=69.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccccc-----------CCcCceEEEEEE--c--CEEEEEEEcCCCCCc-------
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY--K--NISFTVWDVGGQDKI------- 74 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~------- 74 (189)
.++|+|+|.+|+|||||||.|.+....... ++..+....... . .+++.++||||.-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999886643211 122233222222 2 368899999993211
Q ss_pred -----------hhc---------hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 75 -----------RPL---------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 75 -----------~~~---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
... ....=...|+++|.++++.. ++....-.....+. ...++|-|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 000 01111258999999998743 23444433444444 357789999999987654
Q ss_pred CHhHHHhh
Q 029675 135 NAAEITDK 142 (189)
Q Consensus 135 ~~~~~~~~ 142 (189)
+...+...
T Consensus 159 el~~~k~~ 166 (281)
T PF00735_consen 159 ELQAFKQR 166 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.2e-10 Score=83.73 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=90.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc-------CCc---c--ccc-------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEI---V--TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~-------~~~---~--~~~-------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
...++|..+|+.+.|||||...+.. ... . ..- -|+.....++.-.+..+...|+||+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 4579999999999999999876642 111 1 111 13334344455567788999999999998
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH-----HhhhCCccccC
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-----TDKLGLHSLRQ 150 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-----~~~~~~~~~~~ 150 (189)
+.........|+.|+|+++++....+.. ..++......-+.+++++||+|+.+..+..++ .+.+..-.+..
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTr----EHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTR----EHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcch----hhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 8877777889999999999874332222 11111111123468999999999975433222 22222323333
Q ss_pred cceEEEEcccCC
Q 029675 151 RHWYIQSTCATS 162 (189)
Q Consensus 151 ~~~~~~~~Sa~~ 162 (189)
...+++.-|+..
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 445666677654
No 314
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.16 E-value=6.3e-10 Score=87.98 Aligned_cols=164 Identities=14% Similarity=0.176 Sum_probs=107.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEc------CEEEEEEEcCCCCCchhchhhhccC----C
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQN----T 85 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (189)
..-.|+|+|..++|||||+.+|.+.+ ...++.+..|...+.. ...+++|-..|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 45789999999999999999997654 3445666666555441 2478999999987777776655542 3
Q ss_pred CEEEEEEECCCcccHHHHHHHHHH-----------------------------Hhc---CC-----------------C-
Q 029675 86 QGLIFVVDSNDRDRVVEARDELHR-----------------------------MLN---ED-----------------E- 115 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~-----------------------------~~~---~~-----------------~- 115 (189)
-++++|.|.+.|+.+-.....|.. +.. .. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 578899999999865432221111 100 00 0
Q ss_pred ------------CCCCeEEEEEeCCCCCCCCC--------HhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHH
Q 029675 116 ------------LRDAVLLVFANKQDLPNAMN--------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 116 ------------~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (189)
.-++|++||.+|+|.....+ .-.+..+.-..+.-..+...+.||++...+++.+...|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01378999999999753211 1112222222233345667788999999999999999888
Q ss_pred HHhhcc
Q 029675 176 NIASKV 181 (189)
Q Consensus 176 ~~~~~~ 181 (189)
.++..-
T Consensus 262 ~l~~~~ 267 (472)
T PF05783_consen 262 RLYGFP 267 (472)
T ss_pred HhccCC
Confidence 877653
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.14 E-value=9.8e-10 Score=88.89 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-c---cCCcCceEEEEEEcCEEEEEEEcCCCCCch-------hc---hhhh
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-T---IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PL---WRHY 81 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~ 81 (189)
..++|+++|.+|+||||++|++++..... . ..|+..........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 34689999999999999999999976432 1 234433333334567889999999965431 11 1223
Q ss_pred cc--CCCEEEEEEECCCcccH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 82 FQ--NTQGLIFVVDSNDRDRV-V--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+. .+|++|+|..+...... + .+...+..++....+ ..+||+.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCC
Confidence 23 48999999987532221 1 233444444443322 45899999999764
No 316
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.9e-10 Score=90.35 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccC----------------CcCceEE---------EEEEcCEEEEEEEc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNVE---------TVEYKNISFTVWDV 68 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~----------------t~~~~~~---------~~~~~~~~~~i~D~ 68 (189)
+....++.++|+-++|||+|+..|..+..+...+ ..++.+. ..+.+.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4566899999999999999999998765432111 1111111 12235678999999
Q ss_pred CCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
||+-.|.......++.+|++++|+|+.+.-.+.. ...+...++ .+.|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999999999999999999999976544432 233444444 57999999999995
No 317
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.04 E-value=1.6e-10 Score=85.65 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=82.3
Q ss_pred hhhccCCceEEEEcCCCCChHHHHHhHhcCCcc-------c-ccCC---------cCceEEEE-----------------
Q 029675 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-------T-TIPT---------IGFNVETV----------------- 56 (189)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~-------~-~~~t---------~~~~~~~~----------------- 56 (189)
.+.....+-+.++|.+|+|||||++++++.-.. . ...| .+.....+
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 345567899999999999999999887653110 0 0001 11111111
Q ss_pred ---EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
...+..+.++++.|.--..... .. ..+.-+.++++...+. ... .+-.+ ...+-++++||+|+.+.
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f-dl--ge~~~v~vlsV~eg~d--kpl-Kyp~~------f~~ADIVVLNKiDLl~~ 245 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF-DL--GEKHKVAVLSVTEGED--KPL-KYPHM------FAAASLMLLNKVDLLPY 245 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc-ch--hhceeEEEEECccccc--cch-hccch------hhcCcEEEEEhHHcCcc
Confidence 1123345566666641110000 01 1223346666653321 000 01111 23556999999999753
Q ss_pred C--CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 134 M--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
. +.+.+....... .....++++|+++|+|++++.+++.++.
T Consensus 246 ~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 246 LNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 2 233333333221 1235689999999999999999998753
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.04 E-value=2.3e-08 Score=72.79 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCCCc-------------hhchhhhccC-CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 029675 61 ISFTVWDVGGQDKI-------------RPLWRHYFQN-TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 61 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 126 (189)
..+.++||||-... +.+...|+++ .+++++|+|....-.-.... .+.+.+.. ...++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHH---cCCcEEEEEE
Confidence 47899999996421 2245667774 45888999875321111111 22233222 5789999999
Q ss_pred CCCCCCC
Q 029675 127 KQDLPNA 133 (189)
Q Consensus 127 K~D~~~~ 133 (189)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998654
No 319
>PTZ00258 GTP-binding protein; Provisional
Probab=99.01 E-value=1.5e-09 Score=83.86 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=56.8
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEc-----------------CEEEEEEEcCCCCC-
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK-----------------NISFTVWDVGGQDK- 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~- 73 (189)
.+.++|+++|.||+|||||+|.|.+.... .. ..|.+.+...+... ...+.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 66789999999999999999999876543 22 22445555444443 33589999999432
Q ss_pred ------chhchhhhccCCCEEEEEEECC
Q 029675 74 ------IRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 74 ------~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112334567899999999974
No 320
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.4e-09 Score=79.27 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=81.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc----ccCCcCceEEEEEEc-------------------------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYK------------------------------- 59 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~------------------------------- 59 (189)
...--|+++|....||||||+-|+.+.++. ..||++.....+.++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345679999999999999999999988763 456666554433221
Q ss_pred ----------CEEEEEEEcCCCC-----------CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCC
Q 029675 60 ----------NISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 118 (189)
Q Consensus 60 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (189)
-.+++++||||-- .|.....=+...+|.+|++||+...+--.+....+..+.. ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 0247899999932 3334455566789999999998754422333333333333 34
Q ss_pred CeEEEEEeCCCCCCCCCHhHH
Q 029675 119 AVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 119 ~p~ivv~nK~D~~~~~~~~~~ 139 (189)
-.+-||+||.|..+.++.-.+
T Consensus 212 dkiRVVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQLMRV 232 (532)
T ss_pred ceeEEEeccccccCHHHHHHH
Confidence 558899999999887443333
No 321
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.00 E-value=6.8e-10 Score=87.18 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=111.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce---EEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEE
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
.++|+.++|..++|||+|+++++.+.+.....+.+-. ...+......+.+.|.+|... ..+....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 5689999999999999999999999988554443322 233455678888889888433 33557799999999
Q ss_pred ECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCcc-ccCcceEEEEcccCCCCChHHHHH
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-LRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+.+..+|+........+........+|+++++++.-. .......+....+... .+...+.++++++..|.++...|.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i-S~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI-SAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchh-hcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999888776666654444456888888886432 2111111111111111 112335688999999999999999
Q ss_pred HHHHHHhhc
Q 029675 172 WLSNNIASK 180 (189)
Q Consensus 172 ~l~~~~~~~ 180 (189)
.+..++...
T Consensus 183 ~~~~k~i~~ 191 (749)
T KOG0705|consen 183 EVAQKIVQL 191 (749)
T ss_pred HHHHHHHHH
Confidence 998887665
No 322
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.98 E-value=1.5e-09 Score=80.34 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=52.3
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc-c--ccCCcCceEEEEEEcC-----------------EEEEEEEcCCCCCc----h
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI----R 75 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~----~ 75 (189)
|+++|.|++|||||+|++.+.... . ...|++.....+.+.+ ..+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987753 2 2334455554444433 25999999994321 1
Q ss_pred h---chhhhccCCCEEEEEEECC
Q 029675 76 P---LWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 76 ~---~~~~~~~~~d~~i~v~d~~ 95 (189)
. .....++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2334457899999999874
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.97 E-value=3.8e-08 Score=70.77 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=59.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cc-cCCcCceEEEEEEcCEEEEEEEcCCCC-------CchhchhhhccC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQN 84 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~ 84 (189)
+-.-+++++|-|.+|||||+..+....-. .+ ..|....-..+.+.+.++++.|.||-- ...+...+..+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 34568999999999999999988653321 22 122222223467788999999999832 223334556788
Q ss_pred CCEEEEEEECCCccc
Q 029675 85 TQGLIFVVDSNDRDR 99 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s 99 (189)
+|.+++|.|+...+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999986543
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.95 E-value=1e-08 Score=70.96 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=81.9
Q ss_pred cCC-ceEEEEcCCCCChHHHHHhHhcC---Cccc-----ccCC----------cCceEEEE-------------------
Q 029675 15 KKE-MRILMVGLDAAGKTTILYKLKLG---EIVT-----TIPT----------IGFNVETV------------------- 56 (189)
Q Consensus 15 ~~~-~~i~viG~~~~GKssli~~l~~~---~~~~-----~~~t----------~~~~~~~~------------------- 56 (189)
++. ++|.|.|++|||||+|+.+++.. ++.- ..-| .+.....+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 444 89999999999999999887532 1100 0000 11111111
Q ss_pred ---EEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 57 ---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 57 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
......+.++...|.- --. -++.-..+.-|+|+|++..+.... .. ..... ..=++|+||.|+.+.
T Consensus 90 l~~~~~~~Dll~iEs~GNL-~~~--~sp~L~d~~~v~VidvteGe~~P~--K~------gP~i~-~aDllVInK~DLa~~ 157 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNL-VCP--FSPDLGDHLRVVVIDVTEGEDIPR--KG------GPGIF-KADLLVINKTDLAPY 157 (202)
T ss_pred HhhcCCcCCEEEEecCcce-ecc--cCcchhhceEEEEEECCCCCCCcc--cC------CCcee-EeeEEEEehHHhHHH
Confidence 0112456666777711 111 111122448899999976432100 00 00001 134899999999875
Q ss_pred CCH--hHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 134 MNA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
... +......... ..+.+++.+|+++|+|++++++++..+.
T Consensus 158 v~~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VGADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hCccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 433 3322221111 1345788999999999999999987764
No 325
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=2.9e-09 Score=73.91 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=38.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
..++++++|.||+|||||+|++.+...... .|.+......+... ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 358999999999999999999998775433 33222222333332 3689999998
No 326
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.94 E-value=4.8e-09 Score=80.30 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-cc--cCCcCceEEEEEEcC-----------------EEEEEEEcCCCCCc---
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 74 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~--- 74 (189)
++|+++|.||+|||||+|++.+.... .. ..|++.....+...+ ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987732 22 234455444444332 35899999994321
Q ss_pred ----hhchhhhccCCCEEEEEEECC
Q 029675 75 ----RPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 75 ----~~~~~~~~~~~d~~i~v~d~~ 95 (189)
.......++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334467899999999984
No 327
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.94 E-value=6.1e-09 Score=75.13 Aligned_cols=133 Identities=26% Similarity=0.402 Sum_probs=89.5
Q ss_pred CcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHhcCCCCC
Q 029675 48 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RVVEARDELHRMLNEDELR 117 (189)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 117 (189)
|.|+....+.++.++|+.+|.+||.+.+.-|..++.+..++|+|...+... .+.+....+..+....-+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 446666677788899999999999999999999999999999998865322 2344444555555554446
Q ss_pred CCeEEEEEeCCCCCCC------------------------------CCHhHHHh------h-hCCcccc---CcceEEEE
Q 029675 118 DAVLLVFANKQDLPNA------------------------------MNAAEITD------K-LGLHSLR---QRHWYIQS 157 (189)
Q Consensus 118 ~~p~ivv~nK~D~~~~------------------------------~~~~~~~~------~-~~~~~~~---~~~~~~~~ 157 (189)
.+.+|+.+||.|+..+ ..+.-+.. . +.++.+. ...|.+-.
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7889999999997532 00000000 0 0011111 12344445
Q ss_pred cccCCCCChHHHHHHHHHHHhhc
Q 029675 158 TCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
|.|.+-++|..+|+...+.+.+.
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 77888899999999988777654
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.6e-09 Score=71.94 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=38.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGG 70 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g 70 (189)
.+.++|+++|.||+|||||+|++.+.......++.+.. ...+.. +..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 35688999999999999999999987765433333322 222222 23588999998
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.92 E-value=4.4e-09 Score=71.94 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=62.2
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcce
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
++.+...+.+++|++++|+|+.++..... ..+...... .+.|+++++||+|+.+......+.... ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCC
Confidence 35567778888999999999976542221 122222222 368999999999986432222211111 11223
Q ss_pred EEEEcccCCCCChHHHHHHHHHHHh
Q 029675 154 YIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
.++.+||+++.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 5788999999999999999987653
No 330
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=4.6e-09 Score=70.66 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=38.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
+++++|.+|+|||||+|++.+...... .+..+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876532 233333334444433 6899999995
No 331
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=78.22 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=94.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc---cccCCcCceEEEEEEc-CEEEEEEEcCCCC---------Cchhchhhhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYK-NISFTVWDVGGQD---------KIRPLWRHYF 82 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~~~~~~~ 82 (189)
..--|.++|-.|+|||||++.|...... ....|.+..-...... +..+.+.||-|-- .|+......
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV- 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV- 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH-
Confidence 4456899999999999999999854422 2244555444434443 3467788999932 334433333
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEc
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
..+|+++-|.|++.|.. +.........++....+..| ++=|-||.|.... +...+.. . -+.+
T Consensus 256 aeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~----~~e~E~n-------~--~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED----EVEEEKN-------L--DVGI 321 (410)
T ss_pred hhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc----cCccccC-------C--cccc
Confidence 46999999999998864 44444444555544434444 4555666665432 1111111 1 3469
Q ss_pred ccCCCCChHHHHHHHHHHHhh
Q 029675 159 CATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
||++|+|.+++++.+-..+..
T Consensus 322 saltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccCccHHHHHHHHHHHhhh
Confidence 999999999999988776654
No 332
>PRK12289 GTPase RsgA; Reviewed
Probab=98.86 E-value=9.8e-09 Score=78.78 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=62.6
Q ss_pred hhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEE
Q 029675 78 WRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
....+.++|.+++|+|+.++. ....+..++... .. .++|+++|+||+|+.+......+...+. ..++.++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 344578999999999998765 343445555444 22 5789999999999975433333333222 2334678
Q ss_pred EcccCCCCChHHHHHHHHHH
Q 029675 157 STCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.+||+++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988654
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.86 E-value=2.7e-08 Score=75.09 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=76.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCccc-----------ccCCcCceEEEEEE--c--CEEEEEEEcCCCCCc-----
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY--K--NISFTVWDVGGQDKI----- 74 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~----- 74 (189)
.-.|+|+++|+.|.|||||+|+|++..... ..+++.+....... + ...+.++||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 456999999999999999999998864331 12344444433332 2 368899999992111
Q ss_pred --h-------hchhhhc--------------cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 75 --R-------PLWRHYF--------------QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 75 --~-------~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
+ .....|+ ...|+++|.+.++. .++..+.-....-+.. .+-+|-|+.|.|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 0 0111111 24899999999874 3445554444444442 34478888899987
Q ss_pred CCCCHhHHHhh
Q 029675 132 NAMNAAEITDK 142 (189)
Q Consensus 132 ~~~~~~~~~~~ 142 (189)
...+...+.+.
T Consensus 176 T~~El~~~K~~ 186 (373)
T COG5019 176 TDDELAEFKER 186 (373)
T ss_pred CHHHHHHHHHH
Confidence 66554444443
No 334
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.85 E-value=2e-09 Score=76.35 Aligned_cols=134 Identities=25% Similarity=0.363 Sum_probs=90.2
Q ss_pred CCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHhcCCCC
Q 029675 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDEL 116 (189)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (189)
||+|+....++...+.|.+.|.+|+...+..|..++.+.-.+++++.++.. ...++....+..++.-.-.
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 566776667777888999999999999999999999998888887665432 2344445556566554444
Q ss_pred CCCeEEEEEeCCCCCCCC------------------CHhH----HHhhhCCccc--cCcceEEEEcccCCCCChHHHHHH
Q 029675 117 RDAVLLVFANKQDLPNAM------------------NAAE----ITDKLGLHSL--RQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 117 ~~~p~ivv~nK~D~~~~~------------------~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
.+.++|+.+||.|+..+. +.+. +...+..... ....+.. .+.|.+-+||.-+|..
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SH-fTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSH-FTCATDTENIRFVFAA 343 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeee-eeecccchhHHHHHHH
Confidence 689999999999986531 1111 1111111111 1112222 3678888999999999
Q ss_pred HHHHHhhcc
Q 029675 173 LSNNIASKV 181 (189)
Q Consensus 173 l~~~~~~~~ 181 (189)
+.+.+++..
T Consensus 344 VkDtiLq~~ 352 (359)
T KOG0085|consen 344 VKDTILQLN 352 (359)
T ss_pred HHHHHHHhh
Confidence 999887753
No 335
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.1e-09 Score=79.65 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=103.3
Q ss_pred hhccCCceEEEEcCCCCChHHHHHhHhcCC----------------------------cc------cccCCcCceEEEEE
Q 029675 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGE----------------------------IV------TTIPTIGFNVETVE 57 (189)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssli~~l~~~~----------------------------~~------~~~~t~~~~~~~~~ 57 (189)
.++...++++|+|+..+||||+-.+++... .. ....|.+.-...+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 345788999999999999999987774311 00 01123344444455
Q ss_pred EcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
-....+.++|+||+..|-.........+|+.++|+++... -.|+.--+............-...|+++||+|.....
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 6678899999999999988888888899999999998432 2333332222222222222346689999999976432
Q ss_pred ----CHhHHH----hhhCCccc-cCcceEEEEcccCCCCChHHHHH
Q 029675 135 ----NAAEIT----DKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 135 ----~~~~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+.+.. ..+....+ ......|+++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 122222 22221111 22567899999999999987664
No 336
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=1.1e-08 Score=72.38 Aligned_cols=97 Identities=19% Similarity=0.101 Sum_probs=62.6
Q ss_pred chhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCccc
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKL---GLHSL 148 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~---~~~~~ 148 (189)
++.++..+++.+|++++|+|+.++. ++.. .+ ... ..+.|+++|+||+|+.+... ...+.... .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~---~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP---RL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch---hH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 5778888999999999999998653 2211 11 111 14689999999999864432 22222111 00000
Q ss_pred cCcceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 149 RQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
......++.+||+++.|++++++.+.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 000124788999999999999999988763
No 337
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7.3e-08 Score=73.20 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--------cC--CcCceEEEEEE--c--CEEEEEEEcCCCCC-------c
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--------IP--TIGFNVETVEY--K--NISFTVWDVGGQDK-------I 74 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--------~~--t~~~~~~~~~~--~--~~~~~i~D~~g~~~-------~ 74 (189)
-.|.++++|+.|.|||||||+|....+... .+ |..+....... + ..++++.||||--+ +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987654422 11 33333333333 2 36788999999211 1
Q ss_pred hh------------------chhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 75 RP------------------LWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 75 ~~------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
+. ..+.-+. ..|+++|.+.+.. .++..+.-.+..-+. ....+|-|+.|.|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 10 0111122 5899999999874 234555444444444 356678888899987665
Q ss_pred CHhHHHhh
Q 029675 135 NAAEITDK 142 (189)
Q Consensus 135 ~~~~~~~~ 142 (189)
+...+...
T Consensus 175 El~~~K~~ 182 (366)
T KOG2655|consen 175 ELNQFKKR 182 (366)
T ss_pred HHHHHHHH
Confidence 54444443
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.78 E-value=2.7e-08 Score=75.52 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=101.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCccc-----------------ccCCcCceEEEEEE------------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEY------------------ 58 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~-----------------~~~t~~~~~~~~~~------------------ 58 (189)
....+.+.+.|+.++|||||.-.|..+...+ ..-+.++.+..+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3566899999999999999998887654321 00122222222111
Q ss_pred -----cCEEEEEEEcCCCCCchhc--hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 -----KNISFTVWDVGGQDKIRPL--WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 -----~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+.-+.+.||.|++.|-+. ....-++.|-.++++.+++.- +.+-....-+..- ...|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 2345789999999988665 344556899999999997643 3332323222222 579999999999998
Q ss_pred CCCCHhHHHhhh----C----Cc--------------cc-cCc-ceEEEEcccCCCCChHHHHHHHHHHHh
Q 029675 132 NAMNAAEITDKL----G----LH--------------SL-RQR-HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (189)
Q Consensus 132 ~~~~~~~~~~~~----~----~~--------------~~-~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 178 (189)
++...+.+.+.. . +. -. ... -++++.+|+.+|+|.+-+.+.+...-.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCc
Confidence 765433322211 1 00 00 012 468999999999999877766554433
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.2e-08 Score=67.70 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=40.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEE-EEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g 70 (189)
...+++++|.+++|||||+|++.++......++.+.... .+-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 568999999999999999999998765554555554332 1111234799999999
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=98.76 E-value=2.5e-08 Score=75.30 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=59.2
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
...++|.+++|+|+.+++......+.|...+.. .++|+++|+||+|+.+.. ...++.... ...++.++.+|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEe
Confidence 468999999999998876655554434333333 578999999999996321 111122221 12234688999
Q ss_pred cCCCCChHHHHHHHHH
Q 029675 160 ATSGEGLYEGLDWLSN 175 (189)
Q Consensus 160 a~~~~~i~~~~~~l~~ 175 (189)
|+++.|++++++.+..
T Consensus 149 A~~g~gi~~L~~~l~g 164 (298)
T PRK00098 149 AKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCccHHHHHhhccC
Confidence 9999999999987643
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.75 E-value=5e-08 Score=74.89 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=63.7
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..++|.+++|+++....++..+..|+.... . .++|+++|+||+|+.+......+..... .+...++.++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 457999999999987778888877766443 2 5789999999999976432222221111 112234578899999
Q ss_pred CCCChHHHHHHHHHH
Q 029675 162 SGEGLYEGLDWLSNN 176 (189)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (189)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988764
No 342
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.75 E-value=4.5e-08 Score=73.49 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.9
Q ss_pred hhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEE
Q 029675 79 RHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
...+.++|.+++|+|+.++. ++..+..|+..... .++|+++|+||+|+.+.......... ....++.++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence 44578999999999999887 77777776655443 47899999999999754211111111 1113357889
Q ss_pred cccCCCCChHHHHHHHHH
Q 029675 158 TCATSGEGLYEGLDWLSN 175 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~ 175 (189)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887764
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=3.4e-08 Score=68.63 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=39.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
...++++++|.+|+|||||+|++.+..+... .+.+......+..+ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3457999999999999999999998776432 22222333333333 46899999994
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=3.7e-08 Score=69.61 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc----------cccCCcCceEEEEEEcCEEEEEEEcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV----------TTIPTIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
+..+++++|.+|+|||||+|+|.+.... +..|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 4578999999999999999999875421 22332222233333332 579999999
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=7.5e-08 Score=76.54 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
..|-++|+|+||+||||||.+|+......+...+.-.+..+..+...++++.+| .+..++. ....-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccc
Confidence 457888999999999999999875543333333333334466788899999999 3344433 3446699999999986
Q ss_pred CcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCccccC--cceEEEEcccCC
Q 029675 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRQ--RHWYIQSTCATS 162 (189)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 162 (189)
-. |+--...+..++.... -+.++-|+|+.|+.. ..........+...++.. ++..+|..|-..
T Consensus 145 fG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 32 3222233455555432 345788999999864 445666666555554432 455566666443
No 346
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=6.2e-08 Score=78.98 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=78.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC------------ccc---ccCCcCceEEE--EE--EcCEEEEEEEcCCCCCc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE------------IVT---TIPTIGFNVET--VE--YKNISFTVWDVGGQDKI 74 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~------------~~~---~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~ 74 (189)
+..-.+++++.+.+.|||||++.|+... |.+ ...+.++.... +. .+++.++++|+||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3455789999999999999999996432 221 12344443322 22 37899999999999999
Q ss_pred hhchhhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
.....+..+-+|+++.++|+... .++.-+++.|. .+..+++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 99999999999999999999753 23333333222 3455799999999
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=73.44 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=92.1
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceE--EEEEEcCEEEEEEEcCC----------CCCchhch
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGG----------QDKIRPLW 78 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~--~~~~~~~~~~~i~D~~g----------~~~~~~~~ 78 (189)
+..+..++++.|.+++|||||+|.+...... ...++.+..- ..+. -+-.+.+.|.|| .+++..+.
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~-v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH-VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee-ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3577899999999999999999999876644 1222222211 1121 234788999999 23445556
Q ss_pred hhhccCCCE---EEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--Ccc
Q 029675 79 RHYFQNTQG---LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITDKLG--LHS 147 (189)
Q Consensus 79 ~~~~~~~d~---~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~~~~~--~~~ 147 (189)
..|+...+- +++++|++- .++.......+++.+ .+.|+.+|.||||...... ...+...+. ...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 666654443 344445432 345555555555555 6899999999999754311 111111000 000
Q ss_pred ccCcceEEEEcccCCCCChHHHHHHHH
Q 029675 148 LRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (189)
.-....+.+.+|+.++.|++++.-.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehh
Confidence 011233455699999999988765443
No 348
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=4.5e-08 Score=74.53 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=42.0
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~ 72 (189)
....++++|+|-||+|||||||+|.+.......+..|.+ ...+.... .+.++||||--
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~-~i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD-GIYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC-CeEEecCCCcC
Confidence 345689999999999999999999998876443333333 33333333 48999999953
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=5.5e-08 Score=72.67 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=39.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
+.++++++|.||+|||||+|+|.+...... .|.+......+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 468999999999999999999998764432 33222222333332 26899999996
No 350
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3e-07 Score=68.88 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=87.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc-------CCccc----------ccCCcCceEEEEEEc--CEEEEEEEcCCCCCch
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL-------GEIVT----------TIPTIGFNVETVEYK--NISFTVWDVGGQDKIR 75 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~-------~~~~~----------~~~t~~~~~~~~~~~--~~~~~i~D~~g~~~~~ 75 (189)
...++|.-||+...|||||...+.. .++.. .-..+.++..++.+. ...+.=.|+||+.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999766632 11111 112344444555554 4556678999999999
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--------hHHHhhhCCcc
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA--------AEITDKLGLHS 147 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~ 147 (189)
.........-|+.|+|+..+|..-.+.- + ...+.++. .-..+++.+||.|+.++.+. +++...++.
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr-E-HlLLArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf-- 205 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR-E-HLLLARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF-- 205 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH-H-HHHHHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC--
Confidence 8888888889999999999875433221 1 11222221 12558999999999865432 223333333
Q ss_pred ccCcceEEEEcccC
Q 029675 148 LRQRHWYIQSTCAT 161 (189)
Q Consensus 148 ~~~~~~~~~~~Sa~ 161 (189)
.....+++.-||.
T Consensus 206 -~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 -DGDNTPVIRGSAL 218 (449)
T ss_pred -CCCCCCeeecchh
Confidence 3344566666644
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=7e-08 Score=72.51 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=40.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcccc--cCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
...++++++|.||+|||||+|+|.+...... .|.+......+... ..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 3568999999999999999999998775433 33222222333332 368899999963
No 352
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.64 E-value=8e-07 Score=64.41 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=57.6
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--Cccc----ccCCcCceEEEEEE---cCEEEEEEEcCCCCCchh------chh
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNISFTVWDVGGQDKIRP------LWR 79 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~------~~~ 79 (189)
.+..-|.|+|++++|||+|+|++.+. .|.. ...|.++-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999998 5541 13355555444444 357899999999643322 223
Q ss_pred hhccC--CCEEEEEEECCCcc
Q 029675 80 HYFQN--TQGLIFVVDSNDRD 98 (189)
Q Consensus 80 ~~~~~--~d~~i~v~d~~~~~ 98 (189)
..+.. ++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33334 88899888876443
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.8e-07 Score=74.71 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=80.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCC-----ccc------------ccC----CcCceEEEEEEcCEEEEEEEcCCCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGE-----IVT------------TIP----TIGFNVETVEYKNISFTVWDVGGQDK 73 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~-----~~~------------~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (189)
++..+|.++-+-.+||||+.++.+... +.+ ... |+...-..+.++++++.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 356789999999999999999886422 100 011 11122234556789999999999999
Q ss_pred chhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
|-......++-.|+.++|++....-. ......|.+..+ .+.|.+..+||+|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 99988889999999999999864311 122234544443 5899999999999653
No 354
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=9.3e-07 Score=71.61 Aligned_cols=119 Identities=15% Similarity=0.311 Sum_probs=74.5
Q ss_pred HhhhccCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCce-----------------------------------
Q 029675 10 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----------------------------------- 52 (189)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~----------------------------------- 52 (189)
.+...+..-||++.|..++||||++|.++..+.. ...|++.+.
T Consensus 102 ~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 102 DEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALK 181 (749)
T ss_pred HHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence 3445678899999999999999999999764421 111111000
Q ss_pred ---------EEEEEE-c------CEEEEEEEcCCCC---CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcC
Q 029675 53 ---------VETVEY-K------NISFTVWDVGGQD---KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (189)
Q Consensus 53 ---------~~~~~~-~------~~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (189)
...+=+ + .-.+.+.|.||-. ...+-...+...+|++|+|.+..+ .++.....+......
T Consensus 182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE 259 (749)
T ss_pred cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc
Confidence 000000 1 1257789999943 455556677789999999999854 344444434333333
Q ss_pred CCCCCCeEEEEEeCCCCCCC
Q 029675 114 DELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 114 ~~~~~~p~ivv~nK~D~~~~ 133 (189)
.++-++++.||+|....
T Consensus 260 ---~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 ---EKPNIFILNNKWDASAS 276 (749)
T ss_pred ---cCCcEEEEechhhhhcc
Confidence 35557788888898643
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.9e-07 Score=63.04 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEccc
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
.+..+|++++|+|+.++..- ....+...+... ..+.|+++|+||+|+.+......+...+... .....+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 45789999999999876321 112233333221 1458999999999997543233333333221 1223568999
Q ss_pred CCCCChHHHHHHHHHHH
Q 029675 161 TSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 161 ~~~~~i~~~~~~l~~~~ 177 (189)
+.+.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987654
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=3e-07 Score=62.85 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=38.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccC--CcCceEEEEEEcCEEEEEEEcCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGG 70 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g 70 (189)
....+++++|.+|+|||||+|.+.+.... +..+ |..... +... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCC
Confidence 45789999999999999999999986632 2222 333322 2222 4689999998
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=3e-07 Score=62.81 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=54.0
Q ss_pred CEEEEEEECCCcccHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCCCC
Q 029675 86 QGLIFVVDSNDRDRVVEARDELH-RMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
|++++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+... ....++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 78999999987654332 2233 23332 578999999999996542222222122111 12356789999999
Q ss_pred ChHHHHHHHHHHH
Q 029675 165 GLYEGLDWLSNNI 177 (189)
Q Consensus 165 ~i~~~~~~l~~~~ 177 (189)
|++++.+.+.+..
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999887654
No 358
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.3e-07 Score=68.94 Aligned_cols=151 Identities=22% Similarity=0.241 Sum_probs=92.9
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccc-----------------ccC-------CcCceE--EEEEE-----------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIP-------TIGFNV--ETVEY----------- 58 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~-----------------~~~-------t~~~~~--~~~~~----------- 58 (189)
-+++++++|...+|||||+--|..++... ... +.+++- ..+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35899999999999999987775543210 001 111111 01111
Q ss_pred -cCEEEEEEEcCCCCCchhchhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 029675 59 -KNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (189)
Q Consensus 59 -~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 135 (189)
..--+.++|.+|+.+|.......+. ..|...+|+++.....+..- ...-++.- -++|++++.+|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHH---hCCCeEEEEEeeccccchh
Confidence 1235789999999999887655554 37889999998765444322 11122211 4899999999999987633
Q ss_pred HhH----HHhhhC---------------------CccccCcceEEEEcccCCCCChHHHHH
Q 029675 136 AAE----ITDKLG---------------------LHSLRQRHWYIQSTCATSGEGLYEGLD 171 (189)
Q Consensus 136 ~~~----~~~~~~---------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (189)
.+. +...+. ......+..+++.+|+.+|+|++-+..
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 222 221111 111123456889999999999875543
No 359
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.57 E-value=7.1e-07 Score=64.60 Aligned_cols=87 Identities=20% Similarity=0.097 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceE-EEEEEcCEEEEEEEcCCCC-------CchhchhhhccCCCE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV-ETVEYKNISFTVWDVGGQD-------KIRPLWRHYFQNTQG 87 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~d~ 87 (189)
-++.++|-|.+||||++..+.+.... ++.-|+=..+ ...+++.-++++.|.||-- ..........+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 38899999999999999998865422 2222221111 2244677899999999832 223334566788999
Q ss_pred EEEEEECCCcccHHHHH
Q 029675 88 LIFVVDSNDRDRVVEAR 104 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~ 104 (189)
+++|.|+..|-+...+.
T Consensus 140 i~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKII 156 (358)
T ss_pred EEEEeeccCcccHHHHH
Confidence 99999998776554443
No 360
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.56 E-value=9.9e-08 Score=73.85 Aligned_cols=97 Identities=24% Similarity=0.301 Sum_probs=63.7
Q ss_pred CCCchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccc
Q 029675 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSL 148 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~ 148 (189)
+++|+.+...+.+.++++++|+|+.+.. ++. ..+.+.. .+.|+++|+||+|+.+.. ..+++..... ..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHH
Confidence 5678888888889999999999997643 222 2222322 267899999999986432 2233222110 001
Q ss_pred cCcce---EEEEcccCCCCChHHHHHHHHHH
Q 029675 149 RQRHW---YIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
+..++ .++.+||++|.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111 37789999999999999998654
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.3e-07 Score=68.20 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-ccc--CCcCceEEEEE------------------EcCEEEEEEEcCCC----
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVE------------------YKNISFTVWDVGGQ---- 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~------------------~~~~~~~i~D~~g~---- 71 (189)
.+++.++|.||+|||||+|.+...... .+. .|++.+...+. .....+.++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876632 222 24444433221 22457899999983
Q ss_pred ---CCchhchhhhccCCCEEEEEEECCC
Q 029675 72 ---DKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+.......+-+|.+|+++-|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3445556677789999999999863
No 362
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.54 E-value=7.3e-07 Score=68.53 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCc-c--cc-cCCcCceEEEEEEcC-----------------EEEEEEEcCCCCC---
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEI-V--TT-IPTIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 73 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~-~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~--- 73 (189)
+++.++|.|++|||||++.+.+... . .+ ..|+..+...+...+ ..+.+.|.||--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999988765 3 22 224444444444422 4689999999432
Q ss_pred ----chhchhhhccCCCEEEEEEECC
Q 029675 74 ----IRPLWRHYFQNTQGLIFVVDSN 95 (189)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (189)
........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3334556678999999999985
No 363
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.51 E-value=5.2e-07 Score=67.56 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=60.0
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc-ccc--CCcCceEEEEEE-----------------cCEEEEEEEcCCC---
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEY-----------------KNISFTVWDVGGQ--- 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~-----------------~~~~~~i~D~~g~--- 71 (189)
.+.+++.++|.|++|||||+|.+...... .+. .|++.+...+.. ....++++|++|-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 46789999999999999999999876643 333 366655554433 2357899999983
Q ss_pred ----CCchhchhhhccCCCEEEEEEECCC
Q 029675 72 ----DKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 72 ----~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+....-..+.++++|+++-|++..+
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2344446667789999999988753
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.51 E-value=2.6e-07 Score=64.15 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=58.6
Q ss_pred hhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceE
Q 029675 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY 154 (189)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
.......+.++|++++|+|+.++..... ..+.... .+.|+++++||+|+.+.....++.+.+.. ....
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCe
Confidence 3345566788999999999976543211 1122222 35789999999999644222122121111 1124
Q ss_pred EEEcccCCCCChHHHHHHHHHHH
Q 029675 155 IQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
++.+||+++.|++++.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 67899999999999999988875
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.7e-08 Score=75.57 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcCC-----------------cccccC----CcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGE-----------------IVTTIP----TIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~~-----------------~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
..+-.+|.++.+..+||||...|++.-. |..... |+...-..++++++.+.++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 3456789999999999999999986411 111111 2222234577899999999999999
Q ss_pred CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+|+-....+++--|+++.|||.+-.-.-+. ...|.+.-+ .++|-+.++||+|...
T Consensus 114 df~leverclrvldgavav~dasagve~qt-ltvwrqadk----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQT-LTVWRQADK----FKIPAHCFINKMDKLA 168 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccce-eeeehhccc----cCCchhhhhhhhhhhh
Confidence 999999999999999999999874322222 233433322 5899999999999754
No 366
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.41 E-value=2.3e-06 Score=75.50 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccc-----cCC--cCceEEEEEEcCEEEEEEEcCCCC--------Cchhchhhhc--
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTT-----IPT--IGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHYF-- 82 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~-----~~t--~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~-- 82 (189)
.+|+|++|+||||++.+- +-.++-. ..+ .+-...+--+-..+-.++||+|.. .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999876 4344311 111 110000000122356699999932 1223344443
Q ss_pred -------cCCCEEEEEEECCCcc-----cH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 83 -------QNTQGLIFVVDSNDRD-----RV----VEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 83 -------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+++|+++|+.+.- .. ..++..+.++..... ...|+.|++||+|+...
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 3599999999986421 11 122233333333322 58999999999998743
No 367
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=7e-07 Score=66.79 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=60.7
Q ss_pred hchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEE
Q 029675 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155 (189)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
......+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+.+......+.+.+.. .+..+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 335566788999999999976543222 2233333 25789999999999654222333222211 12356
Q ss_pred EEcccCCCCChHHHHHHHHHHHhh
Q 029675 156 QSTCATSGEGLYEGLDWLSNNIAS 179 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~~~~ 179 (189)
+.+|++++.|++++.+.+.+.+.+
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHH
Confidence 789999999999999988877654
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=98.37 E-value=3.5e-06 Score=64.38 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc----CC--cc----c-ccC-----------CcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL----GE--IV----T-TIP-----------TIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~----~~--~~----~-~~~-----------t~~~~~~~~----------------- 56 (189)
+...|+++|++|+||||++.++.. .. +. . ... ..+..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 457899999999999998777643 11 10 0 000 011111100
Q ss_pred EEcCEEEEEEEcCCCCCchhchhhh------ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 57 EYKNISFTVWDVGGQDKIRPLWRHY------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
...+..+.++||+|........... ....|.+++|.|+.....-......+...+ .+--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence 1124569999999976533221111 125889999999864322111122222221 234788999998
Q ss_pred CCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHHH
Q 029675 131 PNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
...- ..-.+....+.+ +.| ++ +|++++++...=.+.+
T Consensus 292 ~~~~G~~ls~~~~~~~P------i~~--i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 292 DAKGGAALSIAYVIGKP------ILF--LG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred CCCccHHHHHHHHHCcC------EEE--Ee--CCCChhhcccCCHHHH
Confidence 6432 222233333332 234 33 7888887765433333
No 369
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.37 E-value=1e-05 Score=64.55 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred EEEEEEcCCC-------------CCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 029675 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQ 128 (189)
Q Consensus 62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 128 (189)
.+.+.|.||- +...++...+..+.+++|+|+---. .+.-+.....++...+-.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 6889999992 2345568889999999999986322 22222223333443333578899999999
Q ss_pred CCCCC--CCHhHHHhhhCCccccCcceEEE
Q 029675 129 DLPNA--MNAAEITDKLGLHSLRQRHWYIQ 156 (189)
Q Consensus 129 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
|+... .++..+.+.+.-..+.-.-..||
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYf 519 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYF 519 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhccee
Confidence 99754 46788888776555533333343
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.36 E-value=7.3e-07 Score=68.55 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccc--c---------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
-++|+|.+|+|||||+|+|.+.....+ . .|+......+..+ ..++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 379999999999999999998653311 1 1223333333222 3599999975554
No 371
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=3.7e-06 Score=60.31 Aligned_cols=123 Identities=18% Similarity=0.285 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCccc----------ccCCcCceEEE--EEEcC--EEEEEEEcCCCCCc-------h
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVET--VEYKN--ISFTVWDVGGQDKI-------R 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~-------~ 75 (189)
.|+|+|+|.+|.||||++|++....... ...|+.+...+ +..++ .+++++||||--+. +
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6999999999999999999997654321 11233333322 22333 57889999993211 0
Q ss_pred h-------chhhhc------------c--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 76 P-------LWRHYF------------Q--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 76 ~-------~~~~~~------------~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
. ....|+ . ..|+++|.+.++.. ++..+.-.+..-+.+ -.-++-|+-|.|-..-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 0 011111 1 47888888887742 344443333333332 23367778899966555
Q ss_pred CHhHHHhhhC
Q 029675 135 NAAEITDKLG 144 (189)
Q Consensus 135 ~~~~~~~~~~ 144 (189)
+..++.+...
T Consensus 201 Er~~FkqrI~ 210 (336)
T KOG1547|consen 201 ERSAFKQRIR 210 (336)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.32 E-value=7.9e-06 Score=62.19 Aligned_cols=140 Identities=20% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc----cc-c-----------CCcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV----TT-I-----------PTIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~----~~-~-----------~t~~~~~~~~----------------- 56 (189)
+...++++|++|+||||++..+... .+. +. . ...+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888531 100 00 0 0011111111
Q ss_pred EEcCEEEEEEEcCCCCCchhc----hhhh--------ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 029675 57 EYKNISFTVWDVGGQDKIRPL----WRHY--------FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (189)
...++.+.++||||....... ...+ -..++..++|+|++.. ...+.+ ....... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 114567999999997543222 1111 1247889999999743 222222 2222211 1345789
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHH
Q 029675 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
.||.|....- ..-.+....+.+ +.| ++ +|++++++...
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~~P------i~~--v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELGIP------IKF--IG--VGEGIDDLQPF 304 (318)
T ss_pred EECCCCCCCccHHHHHHHHHCCC------EEE--Ee--CCCChhhCccC
Confidence 9999965332 223333333333 233 33 77888766543
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.32 E-value=1.4e-06 Score=58.56 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred hhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcc
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
..+..+|++++|+|+.++.+... ..+...+.... .++|+++++||+|+.+.....++...+. ..+..++.+|
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~ii~iS 78 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVVVFFS 78 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 45678999999999987654321 12333332211 4789999999999965432223333222 1224577899
Q ss_pred cCCCCC
Q 029675 160 ATSGEG 165 (189)
Q Consensus 160 a~~~~~ 165 (189)
|.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 988764
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.30 E-value=8e-06 Score=60.88 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=77.2
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC------Ccc----c-cc-----------CCcCceEEEE-----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG------EIV----T-TI-----------PTIGFNVETV----------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~------~~~----~-~~-----------~t~~~~~~~~----------------- 56 (189)
+...++++|++|+||||.+..+... ... + +. .-.+..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999998877421 110 0 00 0111111110
Q ss_pred EEcCEEEEEEEcCCCCCchhchhh-------h-----ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEE
Q 029675 57 EYKNISFTVWDVGGQDKIRPLWRH-------Y-----FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (189)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~-------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 124 (189)
...++.+.++||||.......... . -..+|.+++|+|+... .+... ......+. -.+.-++
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~----~~~~g~I 223 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEA----VGLTGII 223 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhh----CCCCEEE
Confidence 013578999999997654333211 1 1248999999999732 22222 22222221 1245888
Q ss_pred EeCCCCCCCC-CHhHHHhhhCCccccCcceEEEEcccCCCCChHHHHHHHHHH
Q 029675 125 ANKQDLPNAM-NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.||.|..... ..-.+....+.+ +.| ++ +|++++++...=.+.
T Consensus 224 lTKlDe~~~~G~~l~~~~~~~~P------i~~--~~--~Gq~~~dl~~~~~~~ 266 (272)
T TIGR00064 224 LTKLDGTAKGGIILSIAYELKLP------IKF--IG--VGEKIDDLAPFDADW 266 (272)
T ss_pred EEccCCCCCccHHHHHHHHHCcC------EEE--Ee--CCCChHhCccCCHHH
Confidence 9999975432 223333333332 233 33 777777665443333
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.30 E-value=7.1e-07 Score=60.84 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~ 41 (189)
-.++++|++|+|||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999874
No 376
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.29 E-value=3.4e-06 Score=64.27 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=88.1
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc-------------------cccCCcCceEEEEE--------------------
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV-------------------TTIPTIGFNVETVE-------------------- 57 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~-------------------- 57 (189)
+.+++++|...+|||||+--|.+++.. ....+.+.++.-++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999998777553311 00112222221111
Q ss_pred --EcC-EEEEEEEcCCCCCchhchhhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 58 --YKN-ISFTVWDVGGQDKIRPLWRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 58 --~~~-~~~~i~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.+. --+.++|.+|++.|....... -+..|...+++-.+-. +-.+.....-+... -..|+++|.+|+|++.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 111 247899999999987764333 2357777777766421 11111111111111 4789999999999987
Q ss_pred CCCHhHHHh----hhC---------------------CccccCcceEEEEcccCCCCChHHHHHH
Q 029675 133 AMNAAEITD----KLG---------------------LHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 133 ~~~~~~~~~----~~~---------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
....++-.. .+. ..+....-|++|.+|-.+|+|++.+...
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 643333222 111 1222234578899999999999766543
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=3.2e-06 Score=65.65 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC-----c--ccccCCcCceEEEEEEcCEEEEEEEcCCCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE-----I--VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~ 72 (189)
+..+++++|.+|+|||||+|+|.... . .+..|.+......+...+ ...++||||-.
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 34689999999999999999998543 1 123343333333344322 24799999964
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=2.6e-06 Score=65.62 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHhHhcCC
Q 029675 19 RILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~ 41 (189)
.++|+|++|+|||||+|.|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999999765
No 379
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.27 E-value=1.8e-06 Score=66.89 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=38.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc-------ccccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
..+++++|.+|+|||||+|++.+... .+..|.+......+... ..+.++||||-...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCCh
Confidence 46999999999999999999987532 12333333333344432 24679999996533
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.26 E-value=9.1e-06 Score=55.71 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCCCchhchhh--------hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRH--------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
....++|+||-..-...... ..-..+.+++++|+.+..........+...+... + ++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence 45678999997543333221 2235899999999864322211112233333322 2 789999996
No 381
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.24 E-value=2e-06 Score=64.70 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=64.1
Q ss_pred cCCCC-CchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCc
Q 029675 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (189)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 146 (189)
.|||. .........+..+|++++|+|+..+.+... ..+...+. +.|+++|+||+|+.+....+.+...+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 45543 223335566788999999999976543221 22333332 578999999999965422222322221
Q ss_pred cccCcceEEEEcccCCCCChHHHHHHHHHHHhhc
Q 029675 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 180 (189)
..+..++.+|++++.|++++.+.+.+.+.+.
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1123567899999999999999888776543
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=7.2e-06 Score=64.46 Aligned_cols=109 Identities=21% Similarity=0.145 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCChHHHHHhHh------cCCcc-----cccC-----------CcCceEEEEE-----------------
Q 029675 17 EMRILMVGLDAAGKTTILYKLK------LGEIV-----TTIP-----------TIGFNVETVE----------------- 57 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~------~~~~~-----~~~~-----------t~~~~~~~~~----------------- 57 (189)
...|+++|.+|+||||++.+|. +.... .+.+ ..++.+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5679999999999999998885 22211 1110 1122222111
Q ss_pred EcCEEEEEEEcCCCCCchhchhh----h--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLWRH----Y--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..++.+.++||||.......... + ...++.+++|+|+.-...-......+.+. -.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 02568999999997544322111 1 22578999999986432222222223221 23567889999975
Q ss_pred C
Q 029675 132 N 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 383
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.22 E-value=1.4e-06 Score=68.49 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce--EEEEEEcCEEEEEEEcCCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~ 71 (189)
.+.|.+||-||+||||+||.|+|.+..+...|.|-. +.++-.. -.+.++|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCCc
Confidence 489999999999999999999999988776666643 4444433 37899999993
No 384
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.22 E-value=1.3e-05 Score=54.31 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=37.5
Q ss_pred CEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
++.+.++||+|..... ..++..+|.+++|..++-.+.+.-.+- ..+.. -=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence 4678999999865332 347788999999999874333333222 22221 1288899987
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=4e-06 Score=61.57 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCccc-----------ccCCcCceEEEEEEcCEEEEEEEcCCCCCc
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEYKNISFTVWDVGGQDKI 74 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (189)
-.++++|.+|+|||||+|.|.+..... ...|+......+ .+ -.++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 478999999999999999998764321 112333333333 22 379999996543
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=98.10 E-value=2.5e-05 Score=60.52 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=54.7
Q ss_pred ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccC
Q 029675 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT 161 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (189)
..++|.+++|+++..+-....+..++..... .+.+.++|+||+|+.+... +........ ..++.++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCCcEEEEECC
Confidence 5789999999999743333333333333332 4677789999999975411 111111111 234567889999
Q ss_pred CCCChHHHHHHHH
Q 029675 162 SGEGLYEGLDWLS 174 (189)
Q Consensus 162 ~~~~i~~~~~~l~ 174 (189)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
No 387
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3.7e-06 Score=62.35 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=70.7
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 139 (189)
.+.+.|+||++-..........--|++++++..+.++.- +.-.-.-.++.+ -+.++++-||.|+..+....+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~-----LkhiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK-----LKHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh-----hceEEEEechhhhhhHHHHHHH
Confidence 578999999986655544444446777887777643311 111111112221 2458999999999876543332
Q ss_pred HhhhCCccc---cCcceEEEEcccCCCCChHHHHHHHHHHHhhcc
Q 029675 140 TDKLGLHSL---RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 181 (189)
.+++. .+. -..+.+++++||.-..||+-+.+.+++++--..
T Consensus 201 ~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 201 HEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 22221 111 124557889999999999999999999875443
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.06 E-value=9.9e-06 Score=62.94 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CchhchhhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCccccC
Q 029675 73 KIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRQ 150 (189)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~ 150 (189)
.|...........+.+++|+|+.+.. ++. ..+.... .+.|+++|+||+|+.+.. ..+++..... ...+.
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFNGSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCCCchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHh
Confidence 45554444433344999999997633 322 2233332 267899999999996532 2222221110 00111
Q ss_pred cce---EEEEcccCCCCChHHHHHHHHHH
Q 029675 151 RHW---YIQSTCATSGEGLYEGLDWLSNN 176 (189)
Q Consensus 151 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 176 (189)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 111 46789999999999999998765
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.05 E-value=1.2e-05 Score=57.12 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCC------cc-----ccc-----------CCcCceEEEE-----------------EE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGE------IV-----TTI-----------PTIGFNVETV-----------------EY 58 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~------~~-----~~~-----------~t~~~~~~~~-----------------~~ 58 (189)
..|+++|++|+||||.+-+|.... +. .+. ...++.+... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 458999999999999998874311 00 000 0112221111 11
Q ss_pred cCEEEEEEEcCCCCCchhch----hhhc--cCCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 59 KNISFTVWDVGGQDKIRPLW----RHYF--QNTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
++..+.++||||........ ..+. ...+-+++|.+++.. +....... +...+. +-=++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~-~~~~~~-------~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA-FYEAFG-------IDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH-HHHHSS-------TCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH-Hhhccc-------CceEEEEeecCC
Confidence 34679999999976554321 1111 158899999998743 22222211 222211 125679999976
Q ss_pred CC
Q 029675 132 NA 133 (189)
Q Consensus 132 ~~ 133 (189)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 390
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=1.1e-05 Score=59.09 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCccccc-----CCcCceEEEEEE----cCEEEEEEEcCCC-------CCchhc--
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----KNISFTVWDVGGQ-------DKIRPL-- 77 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~----~~~~~~i~D~~g~-------~~~~~~-- 77 (189)
=.|+|+.+|..|.|||||+++|.+-.+...+ |+......+++. -..++.++||.|. +.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3599999999999999999999998876543 333333333333 2357899999982 122111
Q ss_pred ------------------hhhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 029675 78 ------------------WRHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (189)
Q Consensus 78 ------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 134 (189)
....++ ..|+++|.+.++. .++..+......-+. .+..+|-++-|.|-....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 111122 4778888888773 356665554444444 244466667788866543
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=2.1e-05 Score=59.20 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcccc--c---------CCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--I---------PTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~~~--~---------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
..++++|++|+|||||+|.|.+...... . .|... ..+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~--~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHR--ELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceE--EEEEcCC-CCEEEECCCCCccC
Confidence 5799999999999999999987653311 1 11111 2222221 23689999986554
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.01 E-value=1e-05 Score=60.29 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcc-----------cccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIV-----------TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
-.+++|.+|+|||||+|+|.++... ..+.|+......+.. .=.++||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~---gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG---GGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC---CCEEEeCCCCCccC
Confidence 6799999999999999999874321 112233332333321 23689999976554
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.95 E-value=0.00018 Score=55.79 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-cccC-----Cc------------------CceEEEE-----------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----TI------------------GFNVETV-----------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-~~~~-----t~------------------~~~~~~~-----------~~~~ 60 (189)
+.-.|+++||.|+||||-+.+|...... .... |+ ++...-+ ...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4788999999999999998877543221 0011 11 1111110 1135
Q ss_pred EEEEEEEcCCCCCchhch----hhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLW----RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
..+.++||.|...+.... ..++. ...-+.+|++++.. ...+...+.++..- ..-=+++||.|-...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence 679999999987665542 22222 34556678887643 34444444444321 122567899997644
No 394
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=2e-05 Score=59.62 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~ 42 (189)
...++++|++|+|||||+|.|.+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 45789999999999999999987653
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.0001 Score=57.18 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCc-------c---c---ccC-----------CcCceEEEEE-----------EcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------V---T---TIP-----------TIGFNVETVE-----------YKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~-------~---~---~~~-----------t~~~~~~~~~-----------~~~ 60 (189)
+.-.++++|++|+||||++.+|..... . + +.. ..++.+.... ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 456889999999999999988864211 0 0 000 0122222111 135
Q ss_pred EEEEEEEcCCCCCchhch---hhhc---cCCCEEEEEEECCC-cccHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLW---RHYF---QNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELR-DAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~---~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|........ ...+ ..+.-.++|++.+. .+........+.......... ..+-=++.||.|-..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 678999999976443321 1111 23456689999874 444444444444432211000 012357789999764
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.92 E-value=0.00015 Score=50.38 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=38.8
Q ss_pred CEEEEEEEcCCCCCchhch----hhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++|+||........ ... ....+.+++|+|..... ...+......... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568899999975332211 111 13499999999986432 2223333333221 2 35677899997643
No 397
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.86 E-value=0.00018 Score=54.90 Aligned_cols=141 Identities=21% Similarity=0.189 Sum_probs=76.6
Q ss_pred EEEEcCCCCChHHHHHhHhcCCc-----------c----c---ccC---------CcCceEEEEEE-------------c
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEI-----------V----T---TIP---------TIGFNVETVEY-------------K 59 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~-----------~----~---~~~---------t~~~~~~~~~~-------------~ 59 (189)
.++.|-=|||||||++.++.+.- . . ... +.|+-..+++. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 46778899999999999976431 1 0 011 12222222211 2
Q ss_pred CEEEEEEEcCCCCCchhchhhhcc--------CCCEEEEEEECCCcccHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVE-ARDELHRMLNEDELRDAVLLVFANKQDL 130 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 130 (189)
.....++.+.|-..-......+.. ..|+++-|+|+..-..... ..+.+...+.-. =++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 245678888885544333222222 3788999999875332222 333344443332 2899999999
Q ss_pred CCCCCHhHHHhhhCCccccCcceEEEEcccCCCCChHHHH
Q 029675 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (189)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (189)
.+....+.+....... .+...++.++. .+....+++
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc-cCCCHHHhh
Confidence 9875544444433322 23346666666 333443333
No 398
>PRK13695 putative NTPase; Provisional
Probab=97.86 E-value=0.00063 Score=47.30 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998643
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=5.7e-05 Score=58.72 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------c--cc---cc-----------CCcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--VT---TI-----------PTIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------~--~~---~~-----------~t~~~~~~~~~--------------~~ 59 (189)
+...|+++|+.|+||||++..|...- . .+ +. ...++.+.... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999998885311 0 00 00 01122211110 01
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++||+|....... ....+ ...+.+++|+|++-. ...+......+.. -.+-=+++||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 357899999997653322 22222 246788999987522 1233333333321 1234678999997643
Q ss_pred C-CHhHHHhhhCC
Q 029675 134 M-NAAEITDKLGL 145 (189)
Q Consensus 134 ~-~~~~~~~~~~~ 145 (189)
. ..-.+....++
T Consensus 393 ~G~iLni~~~~~l 405 (436)
T PRK11889 393 SGELLKIPAVSSA 405 (436)
T ss_pred ccHHHHHHHHHCc
Confidence 2 23334444443
No 400
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=0.00025 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.5
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
....||.+.|+||+||||++-++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 3468999999999999999988763
No 401
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.81 E-value=0.00036 Score=43.10 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchhc-hhhhccCCCEEEEEEECCC
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~ 96 (189)
+++.|..|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 678899999999998877532211 122222222 7999999987654432 1345567999999999864
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.80 E-value=3.2e-05 Score=54.08 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=63.0
Q ss_pred EEEEcCCCCChHHHHHhHhc-----CC-------ccc------ccCCcCceEEEEEE---------------------c-
Q 029675 20 ILMVGLDAAGKTTILYKLKL-----GE-------IVT------TIPTIGFNVETVEY---------------------K- 59 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~-----~~-------~~~------~~~t~~~~~~~~~~---------------------~- 59 (189)
+++.|-.|||||||+++++. .+ +.. .....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 58899999999999999983 11 110 00111222222211 1
Q ss_pred -CEEEEEEEcCCCCCchhc------hhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 -NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 -~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.....++.+.|...-... ... .-..+.+|.|+|+.+-.........+...+...+ ++++||+|+.+
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~ 155 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS 155 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred CCcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence 346778888886544443 111 1248899999999664333444455555555432 89999999976
Q ss_pred CC
Q 029675 133 AM 134 (189)
Q Consensus 133 ~~ 134 (189)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 403
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.78 E-value=4e-05 Score=42.50 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=27.5
Q ss_pred cCCCEEEEEEECCCccc--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 83 QNTQGLIFVVDSNDRDR--VVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
+-.++++|++|++..+. .+.....+..+...- .++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 44889999999997654 455555555554432 4899999999998
No 404
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00014 Score=57.70 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------------ccccc---CCcCceEE--------EE------------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------------IVTTI---PTIGFNVE--------TV------------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------------~~~~~---~t~~~~~~--------~~------------~~~~ 60 (189)
+..++-++.+...|||||.++|.... |..+. ...++.+. ++ +..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 44788999999999999999996421 22111 11111111 11 1134
Q ss_pred EEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..++++|.||+-+|.+.....++-.|+.+.|+|-.+.--.+. ...+.+.+.+ .+.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhHH
Confidence 678999999999999999999999999999999754322211 1234444443 33347889999953
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00028 Score=56.91 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC--------Cc--ccc---c-----------CCcCceEEEEE-----------EcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG--------EI--VTT---I-----------PTIGFNVETVE-----------YKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~--------~~--~~~---~-----------~t~~~~~~~~~-----------~~~ 60 (189)
..-.|+|+|+.|+||||++..|... .+ .+. . ...++.+.... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4568999999999999999887531 11 110 1 01112122111 135
Q ss_pred EEEEEEEcCCCCCchhchhh---hc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRH---YF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|.......... .+ ......++|++... +...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 67899999997543322110 01 01235677777653 23343333333322 235679999999753
No 406
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.72 E-value=2.9e-05 Score=59.55 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=41.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCcc--cccCCcCceEEEEEEcCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (189)
.+.+++.|+|-|++||||+||+|.....- ...|+.......+.. +-.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCce
Confidence 46799999999999999999999888764 344444333333433 337899999993
No 407
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=0.00014 Score=57.64 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=60.7
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC------Ccc-----cccC-----------CcCceEEEEE---------------
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG------EIV-----TTIP-----------TIGFNVETVE--------------- 57 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~------~~~-----~~~~-----------t~~~~~~~~~--------------- 57 (189)
.+...|+++|.+|+||||++..|... ... ...+ ..+..+....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678999999999999998877421 100 0111 0111111100
Q ss_pred EcCEEEEEEEcCCCCCchhch------hhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 58 YKNISFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.....+.++||||........ ......+|.+++|+|.+... ........+... -...-+|.||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 023478999999976543221 11233689999999986532 222222222111 11235678999965
Q ss_pred C
Q 029675 132 N 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00027 Score=54.83 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC------c--c---cccC-----------CcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE------I--V---TTIP-----------TIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~------~--~---~~~~-----------t~~~~~~~~~--------------~~ 59 (189)
+.-.++++|+.|+||||++.++.... . . .+.+ ..++.+.... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45678999999999999998885311 0 0 0110 1122221110 02
Q ss_pred CEEEEEEEcCCCCCchhch----hhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLW----RHYFQ--NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+.++||||........ ..+.. ..+.+++|.+... ....+...+..+ . .-.+--++.||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f-~----~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL-A----EIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc-C----cCCCCEEEEEcccCCC
Confidence 4689999999985443321 22222 3567777777632 233333333332 1 1233477799999754
No 409
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.0011 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCC
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
+..+...........+++.|++|+|||++++.+...-
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444456689999999999999999887554
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.64 E-value=0.00027 Score=56.05 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc----C--C-cc-----cccC-----------CcCceEEEE----------------
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL----G--E-IV-----TTIP-----------TIGFNVETV---------------- 56 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~----~--~-~~-----~~~~-----------t~~~~~~~~---------------- 56 (189)
...-|+++|++|+||||++..|.. . . .. .+.+ ..++.+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 357899999999999997666532 1 1 10 1111 112222111
Q ss_pred -EEcCEEEEEEEcCCCCCchhch----hhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 029675 57 -EYKNISFTVWDVGGQDKIRPLW----RHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (189)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 129 (189)
...++.+.++||||........ ..+ .-.++.+++|+|.... +........+.... ...-+|.||.|
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD 251 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLD 251 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCcc
Confidence 1124679999999965432211 111 1257888999998642 23333333332211 12356779999
Q ss_pred CC
Q 029675 130 LP 131 (189)
Q Consensus 130 ~~ 131 (189)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 54
No 411
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.63 E-value=5.1e-05 Score=58.37 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=59.3
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCce-EEEEEEcCEEEEEEEcCCCCCc--hhchhhh
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-VETVEYKNISFTVWDVGGQDKI--RPLWRHY 81 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~ 81 (189)
|++|-.-...++.+-|.+||-|++||||+||+|...++-..-|..+.. +..+----..+=++|+||--.- .......
T Consensus 295 lRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~iv 374 (572)
T KOG2423|consen 295 LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIV 374 (572)
T ss_pred HHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHH
Confidence 444444455778899999999999999999999988876554433321 1111111235778999994322 2223333
Q ss_pred ccCCCEEEEEEECCCcccH
Q 029675 82 FQNTQGLIFVVDSNDRDRV 100 (189)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~ 100 (189)
-.+++-|=++.+++.+
T Consensus 375 ---LkGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 375 ---LKGVVRVENVKNPEDY 390 (572)
T ss_pred ---hhceeeeeecCCHHHH
Confidence 3467778888877644
No 412
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=8.9e-05 Score=55.30 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=37.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcCCc-----cc--ccCCcCceEEE-EEE-cCEEEEEEEcCCC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-----VT--TIPTIGFNVET-VEY-KNISFTVWDVGGQ 71 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~~~-----~~--~~~t~~~~~~~-~~~-~~~~~~i~D~~g~ 71 (189)
...++++|+|-||+|||||+|.+..... .. ..|.....+.. +.+ ..-.+.+.||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3569999999999999999998865332 12 22333222222 333 2335889999994
No 413
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00034 Score=54.95 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=60.5
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC-------c--cc--c-c-----------CCcCceEEEE----------EEcCEEE
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE-------I--VT--T-I-----------PTIGFNVETV----------EYKNISF 63 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~-------~--~~--~-~-----------~t~~~~~~~~----------~~~~~~~ 63 (189)
..-++++|++|+||||++.+|.... . .+ . . ...++..... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999998886421 0 00 0 0 0112211111 1135678
Q ss_pred EEEEcCCCCCchhc----hhhhcc-----CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 64 TVWDVGGQDKIRPL----WRHYFQ-----NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 64 ~i~D~~g~~~~~~~----~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
.++||+|....... +..+++ ...-.++|+|++-. ...+.+....+ .. -.+-=++.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCC
Confidence 99999997533221 222222 24578899998743 23333333333 21 233467899999753
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00014 Score=57.32 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCCcc-------cc--cC---------------CcCceEEEE-----------EEcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-------TT--IP---------------TIGFNVETV-----------EYKN 60 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~~~-------~~--~~---------------t~~~~~~~~-----------~~~~ 60 (189)
..-.++++|+.|+||||++..|.+.... .. .. ..++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3468999999999999999887642100 00 00 011111110 1134
Q ss_pred EEEEEEEcCCCCCchhc----hhhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
..+.++||+|....... ...+ ....+-.++|+|.+-. ...+.+....+.. -.+-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 57899999997653222 1111 1235568899998732 2333333333321 223467899999764
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.60 E-value=0.00031 Score=53.63 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEEEEEEcCCCCCchhchhhhcc--------CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYFQ--------NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
....++.+.|-..-..+...+.. ..++++.|+|+.+-.............+... =++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 34678888887655544433321 2588999999864221111111122222221 288999999876
Q ss_pred C
Q 029675 133 A 133 (189)
Q Consensus 133 ~ 133 (189)
+
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.59 E-value=0.00034 Score=55.37 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=36.9
Q ss_pred CEEEEEEEcCCCCCchhchhh------hccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPLWRH------YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
++.+.++||||.......... ..-.++.+++|+|.... +........+.... ...=++.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457899999996543222111 12258899999998643 23333333332211 1235668999954
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=0.00032 Score=52.48 Aligned_cols=89 Identities=25% Similarity=0.216 Sum_probs=58.5
Q ss_pred cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCccccCcceEEEEcccCC
Q 029675 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (189)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (189)
.+.|=.++|+.+.+|+-=....+.+.-.... .++..++++||.|+.+..+... ..........++..+.+|+++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~~~ 151 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSAKN 151 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecCcC
Confidence 3477788888888776333333333333333 4666788899999987754443 111222334567889999999
Q ss_pred CCChHHHHHHHHHHH
Q 029675 163 GEGLYEGLDWLSNNI 177 (189)
Q Consensus 163 ~~~i~~~~~~l~~~~ 177 (189)
+.+++++.+.+...+
T Consensus 152 ~~~~~~l~~~l~~~~ 166 (301)
T COG1162 152 GDGLEELAELLAGKI 166 (301)
T ss_pred cccHHHHHHHhcCCe
Confidence 999999998876553
No 418
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.59 E-value=0.0015 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~ 39 (189)
-.+=|.|+||..+||||||.||+.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHH
Confidence 457799999999999999999965
No 419
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00068 Score=59.47 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcc--cc-----cCCcCceEEEEEEcCEEEEEEEcCCCC--------Cchhchhhh---
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIV--TT-----IPTIGFNVETVEYKNISFTVWDVGGQD--------KIRPLWRHY--- 81 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~--~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~--- 81 (189)
-+|||++|+||||++.. .+.+|+ .. ....+..... -+-.-+-.++||+|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 48999999999999864 233333 11 0111100001 1223467889999842 223334433
Q ss_pred ------ccCCCEEEEEEECCCccc--HHH-------HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 82 ------FQNTQGLIFVVDSNDRDR--VVE-------ARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 82 ------~~~~d~~i~v~d~~~~~s--~~~-------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+-.+++|+.+|+.+.-+ ... ++..+.++..... ...|+.+++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccccccc
Confidence 246899999999864221 111 1222333322222 57999999999998753
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00012 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.--++++|+.|+||||++.+|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999988864
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=8.2e-05 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 422
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.54 E-value=0.00011 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
++-++|+|+.|+||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45679999999999999998854
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00023 Score=59.82 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhcCCcc-------------cccC-----------CcCceEEEE-----------EEcCEE
Q 029675 18 MRILMVGLDAAGKTTILYKLKLGEIV-------------TTIP-----------TIGFNVETV-----------EYKNIS 62 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~~~~-------------~~~~-----------t~~~~~~~~-----------~~~~~~ 62 (189)
--++++|+.|+||||.+.+|...... .+.. ..++.+... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 46899999999999999888642210 0000 011111110 113457
Q ss_pred EEEEEcCCCCCchhc----hhhh--ccCCCEEEEEEECCC-cccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 63 FTVWDVGGQDKIRPL----WRHY--FQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 63 ~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+.++||+|....... .... ....+-.++|+|.+. .+.+.++...+..... -.+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCC
Confidence 899999995543222 1111 234677899999873 3344444333332211 012357799999764
No 424
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00031 Score=54.06 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=56.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--------------Ccc-----c---ccCCcCceE-----------------EE
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV-----T---TIPTIGFNV-----------------ET 55 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--------------~~~-----~---~~~t~~~~~-----------------~~ 55 (189)
.+.--|+++|-.|+||||.+-+|... .|. . .-....+.+ ..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 45567899999999999998887531 110 0 000011111 11
Q ss_pred EEEcCEEEEEEEcCCCCC-----chhch-hhhccCCCEEEEEEECCCcccHHHHHHHHHHHh
Q 029675 56 VEYKNISFTVWDVGGQDK-----IRPLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111 (189)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~-----~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (189)
+..++..+.|.||+|.-. |+.+. -.-.-+.|-+|+|+|.+-..+-......+.+..
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 233568899999999532 22221 112235999999999985544444444455443
No 425
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.00042 Score=54.15 Aligned_cols=99 Identities=25% Similarity=0.265 Sum_probs=58.2
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhcC------Cc-----ccccC-----------CcCceEEEE---------------
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLG------EI-----VTTIP-----------TIGFNVETV--------------- 56 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~~------~~-----~~~~~-----------t~~~~~~~~--------------- 56 (189)
...+..|+++|-.|+||||.+-+|... +. ..+.| .+++.++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 345688999999999999998776431 10 01111 122222221
Q ss_pred --EEcCEEEEEEEcCCCCCchhchh------hhccCCCEEEEEEECCCcccHHHHHHHHHHHhc
Q 029675 57 --EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 112 (189)
Q Consensus 57 --~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (189)
....+.+.|+||+|.-......- ...-++|-+++|+|+.-.+.--+....|.+.+.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 11346899999999654433211 122369999999999755434444445555443
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.00039 Score=51.76 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC----c----ccc--------------cCCcCceEEEEE--------------Ec
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE----I----VTT--------------IPTIGFNVETVE--------------YK 59 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~----~----~~~--------------~~t~~~~~~~~~--------------~~ 59 (189)
+.-+++++|++|+||||++..+...- . ... ....++.+.... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 33699999999999999988774321 0 000 001122211110 12
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYF--QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
+..+.++||||....... +..++ ...+-+++|+|++-. .+.+......+.. -.+-=++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 468899999997643222 22222 246778999998632 2333333333322 2334788999997643
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=0.0001 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+|+|++|+|||||...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 428
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.45 E-value=0.00035 Score=53.87 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=44.6
Q ss_pred EEEEEEEcCCCCCchhchhhhc-------cCCCEEEEEEECCCccc--H--------------------HHHHHHHHHHh
Q 029675 61 ISFTVWDVGGQDKIRPLWRHYF-------QNTQGLIFVVDSNDRDR--V--------------------VEARDELHRML 111 (189)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (189)
....++.+.|-.....+...+. -..|+++.|+|+.+-.. + ..+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999766554443331 14788999999863210 0 01112223333
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029675 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (189)
Q Consensus 112 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 143 (189)
... =++++||+|+.+....+.+...+
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l~~~~~~l 198 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGLARVRAEI 198 (341)
T ss_pred HhC------CEEEEeccccCCHHHHHHHHHHH
Confidence 321 28999999998875555555444
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00093 Score=53.06 Aligned_cols=67 Identities=9% Similarity=0.137 Sum_probs=38.2
Q ss_pred CEEEEEEEcCCCCCchh----chhhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRP----LWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
+..+.++||+|...... ....++. ...-+++|++.+-. ...+.+.+..+-.. . +--++.||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 46799999999765431 1222323 34577888888532 23333333333211 1 2368899999754
Q ss_pred C
Q 029675 133 A 133 (189)
Q Consensus 133 ~ 133 (189)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 3
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=0.00011 Score=49.11 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHhHh
Q 029675 20 ILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~ 38 (189)
|+++|+||+|||||+..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.45 E-value=0.00086 Score=42.70 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=54.3
Q ss_pred EEEc-CCCCChHHHHHhHhcCCcccccCCcCceEEEEEE---cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCC
Q 029675 21 LMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (189)
Q Consensus 21 ~viG-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (189)
+++| ..|+||||+...|...--... +....-++. .+..+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh
Confidence 4444 488999998766532111000 000000100 11179999999875443 3346678999999998763
Q ss_pred cccHHHHHHHHHHHhcCCCCC-CCeEEEEEeC
Q 029675 97 RDRVVEARDELHRMLNEDELR-DAVLLVFANK 127 (189)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 127 (189)
.+.......+..+... ... ...+.+++|+
T Consensus 77 -~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 77 -PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 3455555444433332 212 4456777775
No 432
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.44 E-value=0.00014 Score=52.15 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=37.8
Q ss_pred CEEEEEEEcCCCCCchhc------hhhhccCCCEEEEEEECC------CcccHHHHH-HHHHHHhcCCCCCCCeEEEEEe
Q 029675 60 NISFTVWDVGGQDKIRPL------WRHYFQNTQGLIFVVDSN------DRDRVVEAR-DELHRMLNEDELRDAVLLVFAN 126 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~------~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~n 126 (189)
.....++|+|||-++-.. .-..+++-+.-+.++++. +|..|-... ..+..++. -..|-+=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence 356889999998543221 222333455555555543 343333222 22222322 4677888899
Q ss_pred CCCCCC
Q 029675 127 KQDLPN 132 (189)
Q Consensus 127 K~D~~~ 132 (189)
|+|+-.
T Consensus 172 K~Dl~~ 177 (290)
T KOG1533|consen 172 KADLLK 177 (290)
T ss_pred HhHHHH
Confidence 999753
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00012 Score=51.19 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHhHhcC
Q 029675 18 MRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
No 434
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.44 E-value=0.00033 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=34.2
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
..-+.|+|.+|+|||||+.+++..- ...+..+..+...+..+.+ |.+|.+.++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l-----~~~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH-----hhcCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 3468999999999999999988542 1223334555554444444 777755444
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00013 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+|+|++|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 436
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.38 E-value=0.00011 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 437
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.37 E-value=0.00014 Score=49.83 Aligned_cols=51 Identities=33% Similarity=0.520 Sum_probs=34.2
Q ss_pred eEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCch
Q 029675 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (189)
.+.++|.+|+|||||+.++... ....+.....++.....+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5789999999999999999842 22334444556555544544 777755444
No 438
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.35 E-value=0.001 Score=42.03 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred EEEEc-CCCCChHHHHHhHhcCCcccccCCcCceEEEEEE-cCEEEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCc
Q 029675 20 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (189)
Q Consensus 20 i~viG-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (189)
|++.| ..|+||||+...+...--. .+....-++. ..+.+.++|+|+...... ...+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-H
Confidence 56777 4799999997665421110 1111111111 116799999998754433 36677899999999875 3
Q ss_pred ccHHHHHHHH
Q 029675 98 DRVVEARDEL 107 (189)
Q Consensus 98 ~s~~~~~~~~ 107 (189)
.++......+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 3455554443
No 439
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.35 E-value=0.00096 Score=44.65 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=58.4
Q ss_pred EEEcCCCCChHHHHHhHhc----CCc----ccccCC-cCceEEEEEEcCEEEEEEEcCCCCCchhchhhhccCCCEEEEE
Q 029675 21 LMVGLDAAGKTTILYKLKL----GEI----VTTIPT-IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (189)
Q Consensus 21 ~viG~~~~GKssli~~l~~----~~~----~~~~~t-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 91 (189)
..-|..|+|||++.-.+.. ... .+..+. ... .+.+.++|+|+... ......+..+|.++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv 73 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------DYDYIIIDTGAGIS--DNVLDFFLAADEVIVV 73 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------CCCEEEEECCCCCC--HHHHHHHHhCCeEEEE
Confidence 3456789999998655532 110 011110 111 16799999997543 3335678889999999
Q ss_pred EECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
.+.+ ..++......+..+.... ...++.++.|+.+..
T Consensus 74 ~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 74 TTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred cCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 9986 334444444343333221 345678999998743
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0031 Score=49.45 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcC---------C-c--c---ccc-----------CCcCceEEEEE-----------Ec
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLG---------E-I--V---TTI-----------PTIGFNVETVE-----------YK 59 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~---------~-~--~---~~~-----------~t~~~~~~~~~-----------~~ 59 (189)
...|+++|+.|+||||.+.++... . + . ++. ...++.+.... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 468999999999999998877531 1 0 0 000 01122221111 14
Q ss_pred CEEEEEEEcCCCCCchhc----hhhhccC---CCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 029675 60 NISFTVWDVGGQDKIRPL----WRHYFQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (189)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 132 (189)
++.+.++||+|......+ ...++.. .+-.++|+|++.. ...+...+..+.. -.+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 578999999997643321 2222222 2368899998753 3344444444422 123467899999754
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.31 E-value=0.00022 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.31 E-value=0.00036 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|.+.|++|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.31 E-value=0.00026 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHhHh
Q 029675 19 RILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~ 38 (189)
..++.|+.|+|||||++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998774
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0002 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcCC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
+.=.++++|++|+|||||++++.+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44568999999999999999987544
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.22 E-value=0.00031 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.4
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+..+...|++.|++|||||||++.+..
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999988865
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.16 E-value=0.0093 Score=48.62 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=46.0
Q ss_pred CCEEEEEEECCC---cccHHHHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCC-Hh----HHHhhhCCccccCcceEE
Q 029675 85 TQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDA-VLLVFANKQDLPNAMN-AA----EITDKLGLHSLRQRHWYI 155 (189)
Q Consensus 85 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~~~ 155 (189)
..-+|+|=|.=+ .+. ......+.+++.. ... |+|+|++-+|...... .. .+...+........++..
T Consensus 132 ~~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~ 207 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHRDT-SRFREALRQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITR 207 (519)
T ss_pred CceEEEeeccccccchhH-HHHHHHHHHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceE
Confidence 345666666521 222 4445555555554 344 9999999665432211 11 111222222223344556
Q ss_pred EEcccCCCCChHHHHHHHHHHH
Q 029675 156 QSTCATSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~~ 177 (189)
+....-...-+...+..++.+-
T Consensus 208 I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 208 IKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred EEecCCCHHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 447
>PHA00729 NTP-binding motif containing protein
Probab=97.15 E-value=0.00064 Score=49.07 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+....+....-.+|++.|+||+|||+|..++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555556679999999999999999888653
No 448
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.15 E-value=0.0033 Score=47.23 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred HHHHHHhhhccCCceEEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCC------------
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD------------ 72 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~------------ 72 (189)
+..++......+--+++++|++|.|||+++.+|.........+. .....+....+|...
T Consensus 49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence 45566666666778999999999999999999986543221111 112355566666421
Q ss_pred ------------CchhchhhhccCCCEEEEEEECC-C--cccHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 029675 73 ------------KIRPLWRHYFQNTQGLIFVVDSN-D--RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (189)
Q Consensus 73 ------------~~~~~~~~~~~~~d~~i~v~d~~-~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 127 (189)
.........++....=++++|=- + ..+.......+..+-.-.+.-.+|++.+|++
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11222345667788888888842 2 1223333322222211122257999999875
No 449
>PRK06217 hypothetical protein; Validated
Probab=97.14 E-value=0.00038 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+|+|.+|+||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 450
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.14 E-value=0.013 Score=40.56 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 029675 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (189)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 133 (189)
.+.++|+|+..... ....+..+|.+|++.+... .++......+..+.. . ......++.|+.|....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCccccc
Confidence 69999999865443 3455678999999998863 345554443333322 1 23457789999986543
No 451
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.12 E-value=0.005 Score=44.49 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=40.0
Q ss_pred EEEEEEEcC-CCCCchhchhhhccCCCEEEEEEECCCcccHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 029675 61 ISFTVWDVG-GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (189)
Q Consensus 61 ~~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 131 (189)
..+.+.||. |-+.|. +...+.+|.+|.|.|++- .++..+ ..+.++..... =.++.+|.||.|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 456666665 333333 345578999999999873 333333 23444444421 27899999999965
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.12 E-value=0.00048 Score=45.76 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEI 42 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~ 42 (189)
.=.++|+|+.|+|||||++.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45689999999999999998887653
No 453
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00044 Score=46.29 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.9
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.+..-+|+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999863
No 454
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.09 E-value=0.00054 Score=49.98 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.4
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
...++++|+|++|+|||+|+-.++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999999999998877643
No 455
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00045 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
-+.++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988763
No 456
>PRK14530 adenylate kinase; Provisional
Probab=97.07 E-value=0.00058 Score=49.20 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCChHHHHHhHh
Q 029675 18 MRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~ 38 (189)
.+|+|+|+|||||||+...|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 457
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.07 E-value=0.00051 Score=44.88 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+|.|.+|+||||++..|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.07 E-value=0.0005 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=22.1
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+.+..-|+++|++|+|||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34557799999999999999998864
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.06 E-value=0.00065 Score=44.66 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCCcc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGEIV 43 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~~~ 43 (189)
.-.++++|++|+|||+++..+...-..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 357899999999999999998765543
No 460
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.00059 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.+-|++.|.+|+|||||..+|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999999874
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.06 E-value=0.0005 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
=-++++|++|||||||+|-+-+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999998764
No 462
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.0011 Score=46.14 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=25.9
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
..+........|+|.|++|+|||||.+.|...
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455677788999999999999999998753
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.05 E-value=0.00056 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 464
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00064 Score=48.68 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+..-|+++|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45677899999999999999999754
No 465
>PRK01889 GTPase RsgA; Reviewed
Probab=97.04 E-value=0.00088 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
.-+++++|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 3589999999999999999998754
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.04 E-value=0.00056 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 467
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.04 E-value=0.00062 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 468
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.03 E-value=0.00072 Score=46.26 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=36.1
Q ss_pred EEEEcCCCCChHHHHHhHhcCCcccccCCcCceEEEEEEcCEEEEEEEcCCCCCchh
Q 029675 20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 76 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (189)
+.++|..|+|||||+.+++. .....+..+..++..+.. --.|++|-+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv~-----~L~~~G~rVa~iKH~hh~-~~~D~~GkDs~r~ 55 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVR-----KLKARGYRVATVKHAHHD-FDLDKPGKDTYRH 55 (161)
T ss_pred EEEEecCCCChhhHHHHHHH-----HHHhCCcEEEEEEecCCC-CCCCCCCCccchh
Confidence 67999999999999999863 223444556666665555 3458888776654
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.02 E-value=0.00053 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.++++|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988653
No 470
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00061 Score=47.60 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|.||+||||+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 471
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.01 E-value=0.00079 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=21.5
Q ss_pred ccCCceEEEEcCCCCChHHHHHhHh
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 14 ~~~~~~i~viG~~~~GKssli~~l~ 38 (189)
....+-|+|.|++|||||||++.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999997664
No 472
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0026 Score=48.25 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=63.1
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC--------------Ccc----cccC----CcCceEEE--------------E--
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG--------------EIV----TTIP----TIGFNVET--------------V-- 56 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~--------------~~~----~~~~----t~~~~~~~--------------~-- 56 (189)
.+.+-|+++|-.|+||||-|-+|... .|. ++.. -.+..+.. +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45899999999999999998877431 110 0000 11111111 0
Q ss_pred -EEcCEEEEEEEcCCCCCchhch-------hhhcc-----CCCEEEEEEECCCc-ccHHHHHHHHHHHhcCCCCCCCeEE
Q 029675 57 -EYKNISFTVWDVGGQDKIRPLW-------RHYFQ-----NTQGLIFVVDSNDR-DRVVEARDELHRMLNEDELRDAVLL 122 (189)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i 122 (189)
.-+++.+.++||+|........ ..... ..|-++++.|..-. +++.. ...+...... -=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q-Ak~F~eav~l-------~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ-AKIFNEAVGL-------DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH-HHHHHHhcCC-------ce
Confidence 0146789999999965433321 11222 24458889898744 34433 3445555443 25
Q ss_pred EEEeCCCCC
Q 029675 123 VFANKQDLP 131 (189)
Q Consensus 123 vv~nK~D~~ 131 (189)
+++||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 778999954
No 473
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.01 E-value=0.00045 Score=51.53 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.3
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhc
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
+..-.|++.|++|+||||+++.++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 3478999999999999999999874
No 474
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.01 E-value=0.00062 Score=44.68 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
No 475
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0032 Score=45.86 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=63.4
Q ss_pred ceEEEEcCCCC--ChHHHHHhHhcCCcccccC---CcCceEEEEEEcC--EEEEEEEcCC-CCCchhchhhhccCCCEEE
Q 029675 18 MRILMVGLDAA--GKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN--ISFTVWDVGG-QDKIRPLWRHYFQNTQGLI 89 (189)
Q Consensus 18 ~~i~viG~~~~--GKssli~~l~~~~~~~~~~---t~~~~~~~~~~~~--~~~~i~D~~g-~~~~~~~~~~~~~~~d~~i 89 (189)
-.++|+|.+|+ ||-++.++|....|..... .+.+.-.+++.+- ..+.++-.+- ++.+.. ........-+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEE
Confidence 45789999998 9999999998877653221 1122222332211 1222332222 122222 222334567899
Q ss_pred EEEECCCcccHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCC
Q 029675 90 FVVDSNDRDRVVEARDELHRMLNEDELRD-AVLLVFANKQDLPN 132 (189)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~ 132 (189)
+|||++....+..+..|+-.. .... -..+.++||.|..+
T Consensus 84 mvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvp 123 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEeccchhhhHHHHhhcccc----ccccchhheeccccccccc
Confidence 999999888777766665322 1111 23577899999764
No 476
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.00 E-value=0.0036 Score=47.86 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHhhhccCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+..... ...+|+|.|++|+|||||++.|+..
T Consensus 137 L~~~v~-~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 137 IRSAID-SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHH-cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 333343 3468999999999999999998754
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.98 E-value=0.0006 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988653
No 478
>PRK05439 pantothenate kinase; Provisional
Probab=96.97 E-value=0.00088 Score=50.83 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHhhhccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 7 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.++........+-|+|.|++||||||+.+.|..
T Consensus 76 ~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 76 QFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444556789999999999999999988764
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.96 E-value=0.0012 Score=47.99 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
.+.+-+++.|++|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988753
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.96 E-value=0.00065 Score=47.63 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCChHHHHHhHh
Q 029675 18 MRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~ 38 (189)
-.|+++|++||||||++..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999887
No 481
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.93 E-value=0.00068 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=17.1
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999998753
No 482
>PRK14531 adenylate kinase; Provisional
Probab=96.93 E-value=0.00086 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHHhHhc
Q 029675 18 MRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 18 ~~i~viG~~~~GKssli~~l~~ 39 (189)
.+|+++|+||+||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988853
No 483
>PRK13949 shikimate kinase; Provisional
Probab=96.92 E-value=0.0008 Score=46.63 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987754
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.92 E-value=0.00081 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCChHHHHHhHhc
Q 029675 17 EMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~ 39 (189)
.=.++++|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 34689999999999999998866
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.91 E-value=0.00079 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
.|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.00085 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999998876
No 487
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.001 Score=44.32 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
.|+++|++|+|||+|+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999987753
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.88 E-value=0.00076 Score=48.80 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHhHhc
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~ 39 (189)
|++.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999998875
No 489
>PRK14532 adenylate kinase; Provisional
Probab=96.87 E-value=0.00099 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHhHhc
Q 029675 19 RILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~ 39 (189)
+|+++|+||+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 490
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.87 E-value=0.0013 Score=46.28 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
..-.++++|++|+|||||++.+.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999988754
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.87 E-value=0.00098 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.3
Q ss_pred CceEEEEcCCCCChHHHHHhHh
Q 029675 17 EMRILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~ 38 (189)
.-.++++|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568999999999999999875
No 492
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.87 E-value=0.00084 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHhHhcC
Q 029675 19 RILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~~~ 40 (189)
+|+++|+||+||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 493
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.83 E-value=0.00095 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHhHhcC
Q 029675 20 ILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~~ 40 (189)
|+++|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987653
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.83 E-value=0.001 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCChHHHHHhHhcCC
Q 029675 17 EMRILMVGLDAAGKTTILYKLKLGE 41 (189)
Q Consensus 17 ~~~i~viG~~~~GKssli~~l~~~~ 41 (189)
..-|+++|++|+|||||+++|+...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4558999999999999999997653
No 495
>PRK06696 uridine kinase; Validated
Probab=96.83 E-value=0.002 Score=46.74 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.2
Q ss_pred hccCCceEEEEcCCCCChHHHHHhHhc
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssli~~l~~ 39 (189)
...+.+-|+|.|.+|+|||||.+.|..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999988853
No 496
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.82 E-value=0.0012 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCChHHHHHhHhc
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~ 39 (189)
...+|+++|+|||||||+...|..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998854
No 497
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0011 Score=45.61 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHhHh
Q 029675 19 RILMVGLDAAGKTTILYKLK 38 (189)
Q Consensus 19 ~i~viG~~~~GKssli~~l~ 38 (189)
+|++.|.||+||||+..+|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 78999999999999999887
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCChHHHHHhHhcC
Q 029675 16 KEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 16 ~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+.--|+++|++|+|||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467899999999999999988764
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.81 E-value=0.0013 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCChHHHHHhHhcC
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLG 40 (189)
Q Consensus 15 ~~~~~i~viG~~~~GKssli~~l~~~ 40 (189)
+...+|+|+|++|+|||||++.+++.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcc
Confidence 46789999999999999999999854
No 500
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.0011 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHhHhc
Q 029675 20 ILMVGLDAAGKTTILYKLKL 39 (189)
Q Consensus 20 i~viG~~~~GKssli~~l~~ 39 (189)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
Done!