Query 029675
Match_columns 189
No_of_seqs 126 out of 1823
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 18:24:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029675.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2295-2299//hhsearch_pdb/029675hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 1.0 1 1 199.9 10.5 163 13-181 9-178 (216)
2 1zj6_A ADP-ribosylation factor 1.0 1 1 196.9 21.7 185 1-186 1-185 (187)
3 2x77_A ADP-ribosylation factor 1.0 1 1 195.8 20.0 181 1-181 3-186 (189)
4 2b6h_A ADP-ribosylation factor 1.0 1 1 194.9 17.8 176 5-180 17-192 (192)
5 1moz_A ARL1, ADP-ribosylation 1.0 1 1 194.0 20.9 180 1-180 1-181 (183)
6 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 193.6 20.5 173 14-186 319-491 (497)
7 3o47_A ADP-ribosylation factor 1.0 1 1 191.7 19.4 168 13-180 161-328 (329)
8 1ksh_A ARF-like protein 2; sma 1.0 1 1 189.5 21.0 180 1-182 3-183 (186)
9 1fzq_A ADP-ribosylation factor 1.0 1 1 185.2 19.3 166 15-180 14-179 (181)
10 1f6b_A SAR1; gtpases, N-termin 1.0 1 1 184.6 18.6 165 13-177 21-197 (198)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=1.00 E-value=1 Score=199.85 Aligned_cols=163 Identities=17% Similarity=0.334 Sum_probs=133.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCEEEEEE--E--CCEEEEEEECCCCCCCHHCHHHHCCCCCE
Q ss_conf 0257766999918998768998767419832-35687671378999--8--39799999758998860106521258788
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE--Y--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (189)
.|.+.+||+++|++++|||||+++|+.+.|. .+.||++.++.... . ..+.+++|||+|++.+..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf 99870799999949959999999997399999758964447789999713458999999898963245678998426658
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 99999899954199999999998638888998499998589987989--9868985619964368635999704678989
Q 029675 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (189)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (189)
+++|||++++++|..+..|+..+..... .++|+++|+||+|+.+.. ..++... .++..++.|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBS
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHCCCCCHHHHHH-----HHHHHCCEEEEEECCCCCC
T ss_conf 9998513215777878899999998628-997299992026648618145999766-----9988098047884798969
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 6999999999985123
Q 029675 166 LYEGLDWLSNNIASKV 181 (189)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (189)
|+++|+.+++.+....
T Consensus 163 V~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 163 VKQLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999987502
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=196.91 Aligned_cols=185 Identities=45% Similarity=0.854 Sum_probs=162.6
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHH
Q ss_conf 93018999975502577669999189987689987674198323568767137899983979999975899886010652
Q 029675 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (189)
||..++++++ ...++.++|+++|.+++|||||++++.++.+..+.||.+.....+..++..+.+||+||++.+...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CCHHHHHHHH-HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 9268899998-648986489998999998899999983599886768886206999989989999989999758999999
Q ss_pred HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 12587889999989995419999999999863888899849999858998798998689856199643686359997046
Q 029675 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (189)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (189)
+++.+|++++|+|+++++++.....|+..+.......+.|+++++||+|+.+....+++.+.+....+...++.++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCEEEECCC
T ss_conf 84589899999969898999999999999984642079819999879887679899999988580220378727997668
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78989699999999998512366766
Q 029675 161 TSGEGLYEGLDWLSNNIASKVSSLTS 186 (189)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~~~~ 186 (189)
++|.|++++++++.+.+.......++
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~~~~~~ 185 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRLEHHHH 185 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88748999999999988877654114
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=1.00 E-value=1 Score=195.84 Aligned_cols=181 Identities=52% Similarity=0.963 Sum_probs=159.9
Q ss_pred CCCHHHHHHH--HHHC-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHC
Q ss_conf 9301899997--5502-577669999189987689987674198323568767137899983979999975899886010
Q 029675 1 MGLTFTKLFS--RLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 77 (189)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (189)
||..++++++ +... ++.++|+++|++++|||||++++.++.+....||.+.....+...+..+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 47899999877653067884299999999998999999997499787489786577999989999999989999868999
Q ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 65212587889999989995419999999999863888899849999858998798998689856199643686359997
Q 029675 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQS 157 (189)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
+..+++.+|++++|+|+++++++.....++..+.......+.|+++++||+|+.+....+++...+........++.+++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCEEEEE
T ss_conf 99886209999999959988899999999999973252089849999889888688999999988492330587538997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 046789896999999999985123
Q 029675 158 TCATSGEGLYEGLDWLSNNIASKV 181 (189)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (189)
+||+++.|++++++++.+.+.++.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 427776689999999999998653
No 4
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=1.00 E-value=1 Score=194.86 Aligned_cols=176 Identities=81% Similarity=1.298 Sum_probs=156.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCC
Q ss_conf 89999755025776699991899876899876741983235687671378999839799999758998860106521258
Q 029675 5 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (189)
+..++++...++.++|+++|++++|||||++++.++.+....||.+.....+...+..+.+||+||++.+...+..+++.
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 99999985567766799999999879999999970996665896756679999899899999999978378999998625
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 78899999899954199999999998638888998499998589987989986898561996436863599970467898
Q 029675 85 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (189)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (189)
+|++++|+|+++++++.....|+..+.......+.|+++++||+|+.+....+++...++.......++.+++|||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 99999999798778999999999999634212898599999897887887999999986812026874299977688767
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 9699999999998512
Q 029675 165 GLYEGLDWLSNNIASK 180 (189)
Q Consensus 165 ~i~~~~~~i~~~~~~~ 180 (189)
|++++++++.+.+.++
T Consensus 177 gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 177 GLYDGLDWLSHELSKR 192 (192)
T ss_dssp THHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 8799999999998409
No 5
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=193.95 Aligned_cols=180 Identities=57% Similarity=1.010 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHH
Q ss_conf 93018999975502-57766999918998768998767419832356876713789998397999997589988601065
Q 029675 1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (189)
||+.++++++.... ++.++|+++|++|+|||||++++.++.+....+|.+.....+...+..+.+||+||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 92689999998527898658999999999999999998149967517827666489998887999998999873889999
Q ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 21258788999998999541999999999986388889984999985899879899868985619964368635999704
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.++..+|++++|+|++++.++.....|+..+.......+.|+++++||+|+.+....+++.+.++........+.++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 98355999999997988899999999999997074117985999998988889989899998709111059822999842
Q ss_pred CCCCCCHHHHHHHHHHHHHHC
Q ss_conf 678989699999999998512
Q 029675 160 ATSGEGLYEGLDWLSNNIASK 180 (189)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (189)
|+++.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC
T ss_conf 897748999999999999862
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=193.63 Aligned_cols=173 Identities=70% Similarity=1.211 Sum_probs=156.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEE
Q ss_conf 25776699991899876899876741983235687671378999839799999758998860106521258788999998
Q 029675 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (189)
Q Consensus 14 ~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 93 (189)
..+.++|+++|.+++|||||+++|.++.+....||.+..+..+...++.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 66640699982798878999999845998874786562589999678899999899858789999998656988999998
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 99954199999999998638888998499998589987989986898561996436863599970467898969999999
Q 029675 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (189)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i 173 (189)
+++++++.....++..++......++|+++++||+|+.+....+++...++........+.+++|||++|+|++++|+++
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 96666799999999998531302898689999787787678999999996612452487289997799797999999999
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 9998512366766
Q 029675 174 SNNIASKVSSLTS 186 (189)
Q Consensus 174 ~~~~~~~~~~~~~ 186 (189)
.+.+..+.+..+.
T Consensus 479 ~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 479 TSNYKSKLAAALE 491 (497)
T ss_dssp HHHCC--------
T ss_pred HHHHHHCCCCCCC
T ss_conf 9999733899996
No 7
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=191.70 Aligned_cols=168 Identities=91% Similarity=1.394 Sum_probs=153.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 02577669999189987689987674198323568767137899983979999975899886010652125878899999
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
...+.++|+++|.+++|||||+++|.++.+....||.+..+..+......+.+|||||++.+...+..+++.+|++|+||
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 56675359998999864799999996798777666454279999618589999989997767899999861598899999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 89995419999999999863888899849999858998798998689856199643686359997046789896999999
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (189)
|+++++++.....++..++......++|+++++||+|+.+....+++...++.......++.++++||++|.||+++|++
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 79956789999999999985013499938999989557765589999998554445237977999979989699999999
Q ss_pred HHHHHHHC
Q ss_conf 99998512
Q 029675 173 LSNNIASK 180 (189)
Q Consensus 173 i~~~~~~~ 180 (189)
+.+.+.++
T Consensus 321 l~~~l~~~ 328 (329)
T 3o47_A 321 LSNQLRNQ 328 (329)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHHC
T ss_conf 99999856
No 8
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=1.00 E-value=1 Score=189.49 Aligned_cols=180 Identities=47% Similarity=0.872 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHH
Q ss_conf 93018999975502-57766999918998768998767419832356876713789998397999997589988601065
Q 029675 1 MGLTFTKLFSRLFA-KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 79 (189)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (189)
|| .++ ++.+... .+.++|+++|++++|||||++++.++......||.+.....+..++..+.+||+||++.+...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred CC-HHH-HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 21-307-9876415687149999999999999999998269987434657602599998999999998998786899999
Q ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 21258788999998999541999999999986388889984999985899879899868985619964368635999704
Q 029675 80 HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC 159 (189)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (189)
.+++.+|++++|+|+++++++.....|+..+.......+.|+++++||+|+.+....+++.+.+........++.++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCEEEEEEE
T ss_conf 99667999999998948789999999999997183007995899986866778989999998758443158855999825
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 67898969999999999851236
Q 029675 160 ATSGEGLYEGLDWLSNNIASKVS 182 (189)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~ 182 (189)
|+++.|++++++++.+.+.++..
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~~~ 183 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSRVF 183 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC--
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88888979999999999985343
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=1.00 E-value=1 Score=185.15 Aligned_cols=166 Identities=48% Similarity=0.863 Sum_probs=146.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEEEC
Q ss_conf 57766999918998768998767419832356876713789998397999997589988601065212587889999989
Q 029675 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (189)
Q Consensus 15 ~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (189)
.+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+||+||++.++..+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 88229999899999889999998249988615768767899997988999998999787899999973789999999989
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99541999999999986388889984999985899879899868985619964368635999704678989699999999
Q 029675 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (189)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (189)
++++++.....|+..++......+.|+++++||+|+.+....+++.+.++........+.+++|||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 68777999999999997072006997899997857656889999998839021158861999854887779999999999
Q ss_pred HHHHHC
Q ss_conf 998512
Q 029675 175 NNIASK 180 (189)
Q Consensus 175 ~~~~~~ 180 (189)
+.+.++
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHHC
T ss_conf 988751
No 10
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=1.00 E-value=1 Score=184.58 Aligned_cols=165 Identities=29% Similarity=0.606 Sum_probs=141.5
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHCHHHHCCCCCEEEEEE
Q ss_conf 02577669999189987689987674198323568767137899983979999975899886010652125878899999
Q 029675 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (189)
Q Consensus 13 ~~~~~~~i~iiG~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 92 (189)
...+.++|+++|++|+|||||++++.++.+..+.||.+.....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 05787389999999999999999995699876379988616999989989999999985756899999985499999999
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC---------C---CCCCEEEEECCC
Q ss_conf 8999541999999999986388889984999985899879899868985619964---------3---686359997046
Q 029675 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---------L---RQRHWYIQSTCA 160 (189)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 160 (189)
|+.+++++.....|+..+.......+.|+++++||+|+.+....+++.+...... + ....+.+++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 89887999999999999972813389948999979776346899999988475311133334444556672379999977
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 78989699999999998
Q 029675 161 TSGEGLYEGLDWLSNNI 177 (189)
Q Consensus 161 ~~~~~i~~~~~~i~~~~ 177 (189)
++|+|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 78878899999999860
Done!