BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029676
MDDYRTRRSISSQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHY
QESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANL
LRCLMIASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYI
STVTYAFCH

High Scoring Gene Products

Symbol, full name Information P value
AT3G07510 protein from Arabidopsis thaliana 3.3e-40
MEE60
AT5G05950
protein from Arabidopsis thaliana 2.6e-24
AT3G46890 protein from Arabidopsis thaliana 7.2e-20

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029676
        (189 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079666 - symbol:AT3G07510 "AT3G07510" species...   428  3.3e-40   1
TAIR|locus:2153689 - symbol:MEE60 "AT5G05950" species:370...   278  2.6e-24   1
TAIR|locus:2102742 - symbol:AT3G46890 "AT3G46890" species...   236  7.2e-20   1


>TAIR|locus:2079666 [details] [associations]
            symbol:AT3G07510 "AT3G07510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            UniGene:At.48631 UniGene:At.71201 EMBL:AF370475 EMBL:AY081696
            IPI:IPI00522062 RefSeq:NP_001078120.1 RefSeq:NP_566310.1
            EnsemblPlants:AT3G07510.1 EnsemblPlants:AT3G07510.2 GeneID:819939
            KEGG:ath:AT3G07510 TAIR:At3g07510 eggNOG:NOG246438
            HOGENOM:HOG000240599 InParanoid:Q94K16 OMA:VIQIRLG PhylomeDB:Q94K16
            ProtClustDB:CLSN2721714 ArrayExpress:Q94K16 Genevestigator:Q94K16
            Uniprot:Q94K16
        Length = 189

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEXX 81
             HV+A+DG+VNVNSLFT+AVFVGLSL+ PG +H    S  Q S C A  +V++ L V+E  
Sbjct:    27 HVSALDGLVNVNSLFTIAVFVGLSLATPG-QH----SLEQRSSCDASADVAKKLLVFEVV 81

Query:    82 XXXXXXXXXXXAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLML 141
                        AQG+KLA+NL NS  V++ F+AH N  +LR  M+ASA GSV+GCLFLML
Sbjct:    82 SFSFFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLML 141

Query:   142 SMVKVVEIQMGIFSCGNEHVLQAVASMVVFVTSGLVVYISTVTYAFCH 189
             SMV V++I++G+ SCG++   QAVA++V  V+S L++YIST  YAF H
Sbjct:   142 SMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAFWH 189


>TAIR|locus:2153689 [details] [associations]
            symbol:MEE60 "AT5G05950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009793
            "embryo development ending in seed dormancy" evidence=IMP]
            [GO:0006661 "phosphatidylinositol biosynthetic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009793
            EMBL:AB017060 HOGENOM:HOG000240599 ProtClustDB:CLSN2721714
            EMBL:AY086454 EMBL:BT025529 EMBL:AK228786 IPI:IPI00528332
            RefSeq:NP_196214.1 UniGene:At.32928 STRING:Q9FI91
            EnsemblPlants:AT5G05950.1 GeneID:830480 KEGG:ath:AT5G05950
            TAIR:At5g05950 eggNOG:NOG248420 InParanoid:Q9FI91 OMA:FIGLAWN
            PhylomeDB:Q9FI91 Genevestigator:Q9FI91 Uniprot:Q9FI91
        Length = 175

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/172 (37%), Positives = 95/172 (55%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSRMLTVYEXX 81
             H+TA+DGIVNVNSLFT+AVF+GL+ +P  P++    S   +  CV    ++  L  +   
Sbjct:     6 HITALDGIVNVNSLFTLAVFIGLAWNPTDPDN----SLVTDPNCVPTARMAENLVAFHVY 61

Query:    82 XXXXXXXXXXXAQGVKLA--INLRNSVVVD---DEFKAHFNANLLRCLMIASAAGSVIGC 136
                        A G+K A  +N+ +S  +    D    + N   LR  M+ S  GSV GC
Sbjct:    62 SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121

Query:   137 LFLMLSMVKVVEIQMGIFSCG-NEHVLQAVASMVVFVTSGLVVYISTVTYAF 187
              FLML+++ VV+I++G   CG + H   AV  +V+ V S L +Y+S + YAF
Sbjct:   122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAF 173


>TAIR|locus:2102742 [details] [associations]
            symbol:AT3G46890 "AT3G46890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL096859
            HOGENOM:HOG000240599 ProtClustDB:CLSN2721714 EMBL:BT010845
            EMBL:BT011314 IPI:IPI00547121 PIR:T12959 RefSeq:NP_190273.1
            UniGene:At.35872 EnsemblPlants:AT3G46890.1 GeneID:823842
            KEGG:ath:AT3G46890 TAIR:At3g46890 eggNOG:NOG237103 OMA:GTSIHIT
            PhylomeDB:Q9STG1 Genevestigator:Q9STG1 Uniprot:Q9STG1
        Length = 204

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 64/184 (34%), Positives = 98/184 (53%)

Query:    22 HVTAIDGIVNVNSLFTVAVFVGLSLSP--PGPEHQSSRSHYQESKCVA--GPEVSRMLTV 77
             HVTAIDGIVNVNSLF++A+F+GL+ S     P   S+  ++   +C++  GP ++  L  
Sbjct:    22 HVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAERLVS 81

Query:    78 YEXXXXXXXXXXXXXAQGVKLAINLR----NSVVVDDEFKAHFNA-----NL--LRCLMI 126
                            A  +K AI       N   +++E +   NA     NL  LR  ++
Sbjct:    82 SHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARV-LNAGEGRVNLAALRVGIV 140

Query:   127 ASAAGSVIGCLFLMLSMVKVVEIQMGIFSCGNE-HVLQAVASMVVFVTSGLVVYISTVTY 185
             AS   SV+GC FL +++V +V+I++G   C    H L A+  +VV V S L++Y+  V Y
Sbjct:   141 ASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIYVFLVLY 200

Query:   186 AFCH 189
             AF +
Sbjct:   201 AFIY 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       159   0.00091  106 3  11 22  0.42    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.24u 0.20s 13.44t   Elapsed:  00:00:00
  Total cpu time:  13.24u 0.20s 13.44t   Elapsed:  00:00:00
  Start:  Sat May 11 07:00:59 2013   End:  Sat May 11 07:00:59 2013

Back to top