BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029676
         (189 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B3EFA6|SYH_CHLL2 Histidine--tRNA ligase OS=Chlorobium limicola (strain DSM 245 /
           NBRC 103803) GN=hisS PE=3 SV=1
          Length = 430

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)

Query: 71  VSRMLTVYEVVSFSFFLFSSLVAQGVKLAIN--------------LRNSVV-----VDDE 111
           VS    V EV++F   +F  L  QG+KL IN              LRN +      +DD 
Sbjct: 136 VSSPAAVAEVITFMMHVFEDLGLQGLKLRINTLGNMDDRKRYRDALRNYLAPCYEQLDDA 195

Query: 112 FKAHFNANLLRCL 124
            K  F  N LR L
Sbjct: 196 SKERFEKNPLRIL 208


>sp|B0U472|SYM_XYLFM Methionine--tRNA ligase OS=Xylella fastidiosa (strain M12) GN=metG
           PE=3 SV=1
          Length = 702

 Score = 30.8 bits (68), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  QTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSR 73
           ++ +TT +H      IVN ++LF  AV  G     P      +R H      V G ++S+
Sbjct: 291 RSGTTTELHHFIGKDIVNFHALFWPAVLHGTGRCAP------TRLHVNGYLTVDGAKMSK 344

Query: 74  MLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDD------EFKAHFNANLL-RCLMI 126
               +  +    +L + L    ++     ++S  VDD      +F A  NA+L+ + + +
Sbjct: 345 SRGTF--IMARTYLDAGLEPDALRYYFAAKSSGDVDDLDLNLSDFVARVNADLVGKLVNL 402

Query: 127 ASAAGSVIGCLF 138
           AS   S IG  F
Sbjct: 403 ASRCASFIGTRF 414


>sp|Q87B68|SYM_XYLFT Methionine--tRNA ligase OS=Xylella fastidiosa (strain Temecula1 /
           ATCC 700964) GN=metG PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 6.9,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  QTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSR 73
           ++ +TT +H      IVN ++LF  AV  G     P      +R H      V G ++S+
Sbjct: 291 RSGTTTELHHFIGKDIVNFHALFWPAVLHGTGHRAP------TRLHVNGYLTVDGAKMSK 344

Query: 74  MLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDD------EFKAHFNANLL-RCLMI 126
               +  +    +L + L    ++     ++S  VDD      +F A  NA+L+ + + +
Sbjct: 345 SRGTF--IMARTYLDAGLEPDALRYYFAAKSSGDVDDLDLNLSDFVARVNADLVGKLVNL 402

Query: 127 ASAAGSVIGCLF 138
           AS   S IG  F
Sbjct: 403 ASRCASFIGTRF 414


>sp|Q9PFV8|SYM_XYLFA Methionine--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=metG
           PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 6.9,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  QTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSR 73
           ++ +TT +H      IVN ++LF  AV  G     P      +R H      V G ++S+
Sbjct: 291 RSGTTTELHHFIGKDIVNFHALFWPAVLHGTGHRAP------TRLHVNGYLTVDGAKMSK 344

Query: 74  MLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDD------EFKAHFNANLL-RCLMI 126
               +  +    +L + L    ++     ++S  VDD      +F A  NA+L+ + + +
Sbjct: 345 SRGTF--IMARTYLDAGLEPDALRYYFAAKSSGDVDDLDLNLSDFVARVNADLVGKLVNL 402

Query: 127 ASAAGSVIGCLF 138
           AS   S IG  F
Sbjct: 403 ASRCASFIGTRF 414


>sp|B2I7S0|SYM_XYLF2 Methionine--tRNA ligase OS=Xylella fastidiosa (strain M23) GN=metG
           PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 6.9,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  QTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPPGPEHQSSRSHYQESKCVAGPEVSR 73
           ++ +TT +H      IVN ++LF  AV  G     P      +R H      V G ++S+
Sbjct: 291 RSGTTTELHHFIGKDIVNFHALFWPAVLHGTGHRAP------TRLHVNGYLTVDGAKMSK 344

Query: 74  MLTVYEVVSFSFFLFSSLVAQGVKLAINLRNSVVVDD------EFKAHFNANLL-RCLMI 126
               +  +    +L + L    ++     ++S  VDD      +F A  NA+L+ + + +
Sbjct: 345 SRGTF--IMARTYLDAGLEPDALRYYFAAKSSGDVDDLDLNLSDFVARVNADLVGKLVNL 402

Query: 127 ASAAGSVIGCLF 138
           AS   S IG  F
Sbjct: 403 ASRCASFIGTRF 414


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.133    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,420,786
Number of Sequences: 539616
Number of extensions: 1772312
Number of successful extensions: 6183
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6182
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)