Query 029676
Match_columns 189
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 16:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01560 HCV_NS1: Hepatitis C 34.5 7.5 0.00016 36.2 -1.6 32 87-123 13-44 (344)
2 COG5567 Predicted small peripl 25.1 62 0.0013 23.4 2.1 20 118-137 2-21 (58)
3 PF02038 ATP1G1_PLM_MAT8: ATP1 24.5 1.3E+02 0.0028 21.1 3.6 24 115-138 8-32 (50)
4 PF04583 Baculo_p74: Baculovir 19.1 2.6E+02 0.0057 25.3 5.3 41 109-149 70-122 (249)
5 PF12676 DUF3796: Protein of u 17.5 2.5E+02 0.0055 22.2 4.3 31 107-137 46-76 (118)
6 PF06692 MNSV_P7B: Melon necro 16.1 33 0.00071 24.9 -0.9 32 64-95 5-36 (61)
7 PF07332 DUF1469: Protein of u 16.0 3.7E+02 0.0079 20.1 4.8 22 126-147 42-63 (121)
8 PF02687 FtsX: FtsX-like perme 15.6 4.1E+02 0.0089 18.4 5.3 27 115-141 42-68 (121)
9 PF01554 MatE: MatE; InterPro 15.4 4.8E+02 0.011 19.2 5.6 58 84-142 36-93 (162)
10 PF11166 DUF2951: Protein of u 13.7 3.5E+02 0.0076 21.4 4.1 24 115-138 63-88 (98)
No 1
>PF01560 HCV_NS1: Hepatitis C virus non-structural protein E2/NS1; InterPro: IPR002531 The hypervariable region of the E2/NS1 region of Hepatitis C virus varies greatly between viral isolates. E2 is thought to encode a structurally unconstrained envelope protein [].; PDB: 2KZQ_A 4DGV_A 4DGY_A.
Probab=34.48 E-value=7.5 Score=36.19 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHhhhhccCCCcchhhhhhhhHHHHHH
Q 029676 87 LFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRC 123 (189)
Q Consensus 87 LfSSLvA~gLKl~i~l~~~~~~~~~~~a~in~~~LR~ 123 (189)
=|+||...|=||-|.|.|.+ .++ ||||.+|-.
T Consensus 13 gftsLFs~Gp~QnIQLINTN---GSW--HINRTALNC 44 (344)
T PF01560_consen 13 GFTSLFSPGPSQNIQLINTN---GSW--HINRTALNC 44 (344)
T ss_dssp --------------EEEEET---TEE--EEE------
T ss_pred hhhhccCCCCCCCCeEeecC---ccc--ccCCCCccc
Confidence 46889999999999999873 345 999999876
No 2
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=25.08 E-value=62 Score=23.35 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q 029676 118 ANLLRCLMIASAAGSVIGCL 137 (189)
Q Consensus 118 ~~~LR~gmL~sa~GSV~Gc~ 137 (189)
++++|-+|++..+-|+.||+
T Consensus 2 k~~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 2 KNVFKSLLALATLFSLAGCG 21 (58)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 35778888888888999997
No 3
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.48 E-value=1.3e+02 Score=21.05 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.4
Q ss_pred hhhHHHHHH-HHHHHhhhHHHHHHH
Q 029676 115 HFNANLLRC-LMIASAAGSVIGCLF 138 (189)
Q Consensus 115 ~in~~~LR~-gmL~sa~GSV~Gc~F 138 (189)
+-+-..||. |++.+++-.++|-+.
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILI 32 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhhccchHHHHHHHHHHHHH
Confidence 566678999 788888888887644
No 4
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=19.10 E-value=2.6e+02 Score=25.27 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=30.7
Q ss_pred chhhhh----hhhHHHHHHH------H--HHHhhhHHHHHHHHHHHHHHHhhh
Q 029676 109 DDEFKA----HFNANLLRCL------M--IASAAGSVIGCLFLMLSMVKVVEI 149 (189)
Q Consensus 109 ~~~~~a----~in~~~LR~g------m--L~sa~GSV~Gc~FLmlsmvnvVQI 149 (189)
.|.+|+ .+||-+.|.. | ++.+.+||.|-+...+.+.+.|-.
T Consensus 70 getyKaav~h~~nr~aIkt~s~vAkal~r~~~~AaSVvgi~Li~~ti~DlvL~ 122 (249)
T PF04583_consen 70 GETYKAAVVHQLNRIAIKTVSTVAKALTRIAIAAASVVGIVLIFLTIADLVLM 122 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 7788777762 2 367788999999999999998843
No 5
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=17.50 E-value=2.5e+02 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=21.3
Q ss_pred CcchhhhhhhhHHHHHHHHHHHhhhHHHHHH
Q 029676 107 VVDDEFKAHFNANLLRCLMIASAAGSVIGCL 137 (189)
Q Consensus 107 ~~~~~~~a~in~~~LR~gmL~sa~GSV~Gc~ 137 (189)
..||.++++.++.+.|..++.-...+++...
T Consensus 46 ~~DErf~~n~~kAa~~af~v~l~~~~ii~l~ 76 (118)
T PF12676_consen 46 IPDERFYENVRKAASRAFFVALILLFIILLI 76 (118)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999988888776655555554433
No 6
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=16.10 E-value=33 Score=24.86 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=24.4
Q ss_pred CCCCCcccccceeEEeeehhhHHhHHHHHHHH
Q 029676 64 KCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQG 95 (189)
Q Consensus 64 ~C~a~~~ia~~Lv~FeV~SFsfFLfSSLvA~g 95 (189)
.|+.+|.-..-++.--++||-||+.++|--|+
T Consensus 5 rc~~~p~d~~~~lLiliis~~f~lI~~l~qq~ 36 (61)
T PF06692_consen 5 RCDSAPGDYSGPLLILIISFVFFLITSLGQQG 36 (61)
T ss_pred ccCCCCccchhHHHHHHHHHHHHHHhhhccCC
Confidence 47777776666666677899999999876554
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=15.97 E-value=3.7e+02 Score=20.06 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=14.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHh
Q 029676 126 IASAAGSVIGCLFLMLSMVKVV 147 (189)
Q Consensus 126 L~sa~GSV~Gc~FLmlsmvnvV 147 (189)
.+.++-.++|.+|+..+++-..
T Consensus 42 ~~a~vl~~~~l~~l~~al~~~l 63 (121)
T PF07332_consen 42 VLAAVLALLALLFLLVALVFAL 63 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777777777766
No 8
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=15.65 E-value=4.1e+02 Score=18.44 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 029676 115 HFNANLLRCLMIASAAGSVIGCLFLML 141 (189)
Q Consensus 115 ~in~~~LR~gmL~sa~GSV~Gc~FLml 141 (189)
++.+..++-.++.+.+|.+.|+.+-..
T Consensus 42 ~i~~~~~~e~~~~~~~~~~~g~~~~~~ 68 (121)
T PF02687_consen 42 QIRKMFLYEALLIALIGILIGILLGIL 68 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666788888888888665444
No 9
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=15.40 E-value=4.8e+02 Score=19.18 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=27.6
Q ss_pred hHHhHHHHHHHHHHHhhhhccCCCcchhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 029676 84 SFFLFSSLVAQGVKLAINLRNSVVVDDEFKAHFNANLLRCLMIASAAGSVIGCLFLMLS 142 (189)
Q Consensus 84 sfFLfSSLvA~gLKl~i~l~~~~~~~~~~~a~in~~~LR~gmL~sa~GSV~Gc~FLmls 142 (189)
..+.+...+..|+-.+....-++...+..+.+++ +..|.++..+.+-++..++++..-
T Consensus 36 ~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (162)
T PF01554_consen 36 SIFSILFMLIFGLATALQILISQNIGAGDYKRAK-KVVRQGLLLSLIIGLLLSLVLLLF 93 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccccceeecccccccccccc-cccccccccchhcccchhhhhhhH
Confidence 3444444456666555555333222222233444 455555555555555555554433
No 10
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=13.70 E-value=3.5e+02 Score=21.41 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.3
Q ss_pred hhhHHHHH-H-HHHHHhhhHHHHHHH
Q 029676 115 HFNANLLR-C-LMIASAAGSVIGCLF 138 (189)
Q Consensus 115 ~in~~~LR-~-gmL~sa~GSV~Gc~F 138 (189)
+-|++-+| + +-++..+|.++|.+-
T Consensus 63 ~~n~Knir~~KmwilGlvgTi~gsli 88 (98)
T PF11166_consen 63 KKNDKNIRDIKMWILGLVGTIFGSLI 88 (98)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888788 4 788889999999864
Done!