Query 029676
Match_columns 189
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 18:28:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029676.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2295-2299//hhsearch_pdb/029676hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1waz_A MERF; protein structure 1.0 1 1 13.3 -2.6 14 175-188 27-40 (46)
2 1b3t_A Protein (nuclear protei 1.0 1 1 12.6 -0.0 67 31-102 53-121 (147)
3 2kix_A BM2 protein; channel, t 1.0 1 1 12.2 -0.1 15 78-92 5-19 (33)
4 2k42_B Espfu; WAsp, GBD, autoi 1.0 1 1 11.9 1.3 11 92-102 7-17 (36)
5 2lif_A Core protein P21; signa 1.0 1 1 11.7 0.0 10 82-91 5-14 (27)
6 3tnx_A Papain; hydrolase, cyto 1.0 1 1 11.7 0.1 19 84-102 175-193 (363)
7 2kxc_B ESPF-like protein; IRTK 1.0 1 1 11.7 1.3 11 92-102 5-15 (48)
8 2bg9_E Acetylcholine receptor 1.0 1 1 11.6 -2.6 25 19-43 32-56 (370)
9 1zke_A Hypothetical protein HP 1.0 1 1 11.4 -0.7 16 141-156 30-45 (83)
10 2bg9_B Acetylcholine receptor 1.0 1 1 11.4 -3.1 49 1-49 12-63 (370)
No 1
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=1.00 E-value=1 Score=13.34 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=6.7
Q ss_pred HHHHHEEEEEEEEC
Q ss_conf 21320221333411
Q 029676 175 GLVVYISTVTYAFC 188 (189)
Q Consensus 175 aLviyi~~v~Yaf~ 188 (189)
||.+++...+||+.
T Consensus 27 aLa~Fi~lt~ya~~ 40 (46)
T 1waz_A 27 ALAIFIGLTIYAIQ 40 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 2
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=1.00 E-value=1 Score=12.61 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=38.3
Q ss_pred ECCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0304678887763244999--98887766655799888980000003577642136776789999998984233
Q 029676 31 NVNSLFTVAVFVGLSLSPP--GPEHQSSRSHYQESKCVAGPEVSRMLTVYEVVSFSFFLFSSLVAQGVKLAINL 102 (189)
Q Consensus 31 nVNSLFTiAVFiGLs~~~~--~~~~q~~~sl~~~~~C~a~~~ia~~Lv~FeV~SFsfFLfSSLvA~gLKl~i~l 102 (189)
+-+|++.+--.++|+...- .|--.-+-..+..|.=-||+-.+. -+.-|-.||-.++.|.++|.+|+=
T Consensus 53 sKts~YnLRR~lal~ipecRltpL~RLPyG~a~gpGPqPgPlrES-----~~~yFlvFlqt~~fAe~~kDAi~D 121 (147)
T 1b3t_A 53 SKTSLYNLRRGTALAIPQCRLTPLSRLPFGMAPGPGPQPGPLRES-----IVCYFMVFLQTHIFAEVLKDAIKD 121 (147)
T ss_dssp CHHHHHHHHHHHHHHCTTCEECCCEEEECCCCSSSSCCCCTTCEE-----EEEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHH-----EEEEEEEEEEHHHHHHHHHHHHHH
T ss_conf 753156567777620522031432346667689999989762010-----136664532045789999999999
No 3
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=1.00 E-value=1 Score=12.18 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=10.4
Q ss_pred EEEEHHHHHHHHHHH
Q ss_conf 764213677678999
Q 029676 78 YEVVSFSFFLFSSLV 92 (189)
Q Consensus 78 FeV~SFsfFLfSSLv 92 (189)
|.++|-++|.+|.|-
T Consensus 5 ~qilsi~sfilsalh 19 (33)
T 2kix_A 5 FQILSISSFILSALH 19 (33)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 688999999999999
No 4
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=1.00 E-value=1 Score=11.92 Aligned_cols=11 Identities=27% Similarity=0.160 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99998984233
Q 029676 92 VAQGVKLAINL 102 (189)
Q Consensus 92 vA~gLKl~i~l 102 (189)
|||.||+++--
T Consensus 7 IAQaLk~HLAa 17 (36)
T 2k42_B 7 VAQRLMQHLAE 17 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 5
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=1.00 E-value=1 Score=11.67 Aligned_cols=10 Identities=50% Similarity=0.886 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q ss_conf 1367767899
Q 029676 82 SFSFFLFSSL 91 (189)
Q Consensus 82 SFsfFLfSSL 91 (189)
|||.||+.-+
T Consensus 5 sfsiFlLaLl 14 (27)
T 2lif_A 5 PFSIFLLALL 14 (27)
No 6
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=1.00 E-value=1 Score=11.66 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 6776789999998984233
Q 029676 84 SFFLFSSLVAQGVKLAINL 102 (189)
Q Consensus 84 sfFLfSSLvA~gLKl~i~l 102 (189)
||.-||+.-|.-=...|..
T Consensus 175 SCWAFsa~~alE~~~~i~t 193 (363)
T 3tnx_A 175 SAWAFSAVSTIESIIKIRT 193 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCHHHHHHHHC
T ss_conf 4044421203778999874
No 7
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=11.65 Aligned_cols=11 Identities=27% Similarity=0.160 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99998984233
Q 029676 92 VAQGVKLAINL 102 (189)
Q Consensus 92 vA~gLKl~i~l 102 (189)
|||.||+++--
T Consensus 5 iaQaLk~HLAA 15 (48)
T 2kxc_B 5 VAQRLMQHLAE 15 (48)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 8
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=1.00 E-value=1 Score=11.64 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=10.7
Q ss_pred CEEEEEECCCEEECCHHHHHHHHHH
Q ss_conf 2685352023120304678887763
Q 029676 19 TSIHVTAIDGIVNVNSLFTVAVFVG 43 (189)
Q Consensus 19 t~ihvtALD~iVnVNSLFTiAVFiG 43 (189)
.++++..+.++--.|.-||+-+++-
T Consensus 32 ~~i~l~~i~~vde~~~~~~~~~~l~ 56 (370)
T 2bg9_E 32 LKLTLTNLISLNEKEEALTTNVWIE 56 (370)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEHHHHCHHHCCCCEEEEEEEE
T ss_conf 9999525215131056606869885
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=1.00 E-value=1 Score=11.40 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.4
Q ss_pred HHHHHHHHHHEEEEEC
Q ss_conf 9978875442112213
Q 029676 141 LSMVKVVEIQMGIFSC 156 (189)
Q Consensus 141 lsmvnvVQIkLG~LsC 156 (189)
+|++|+|.||-|...-
T Consensus 30 iSl~DyImiKRGS~Dm 45 (83)
T 1zke_A 30 LSLGDFIEIKRGSMDM 45 (83)
T ss_dssp CCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHEECCCCCC
T ss_conf 1367873101367668
No 10
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=1.00 E-value=1 Score=11.36 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCHHHHCCCC---CCCCCCCCEEEEEECCCEEECCHHHHHHHHHHCCCCCC
Q ss_conf 91012110223---36888852685352023120304678887763244999
Q 029676 1 MDDYRTRRSIS---SQQTSSTTSIHVTAIDGIVNVNSLFTVAVFVGLSLSPP 49 (189)
Q Consensus 1 ~~~~~~~~~~~---s~~~~~~t~ihvtALD~iVnVNSLFTiAVFiGLs~~~~ 49 (189)
+++|+++.+=. +.+..-+.++++..+.++--.|.-||+-+++-..|.-+
T Consensus 12 l~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~ 63 (370)
T 2bg9_B 12 FENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDY 63 (370)
T ss_dssp HHHCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECT
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHCCCCCEEEEEEEEEEEECC
T ss_conf 7538998899889999789999999536320130155528888773115886
Done!