BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029678
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2F2G|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2Q4X|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
pdb|2Q4X|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
Length = 221
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/185 (61%), Positives = 128/185 (69%), Gaps = 10/185 (5%)
Query: 3 GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
GQDY+FVR FV F ASVLI+A K+S +S D EV+LGG+A L+DEI WFK+E SKW V+
Sbjct: 45 GQDYLFVRRFVPFVASVLIRACKDSGES-SDXEVVLGGIASLNDEIEWFKREGSKWDVDF 103
Query: 63 SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
S VPQ+ANQ Y RFLE L S EV Y V T FWAIEAVYQESFAHCLE TP EL
Sbjct: 104 STVVPQRANQEYGRFLEDLXSSEVKYPVIXTAFWAIEAVYQESFAHCLEDGNKTPVELTG 163
Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
C RWGNDGF QYC S+K IA R LE AS +VL +AE L+RVLE EV FW
Sbjct: 164 ACHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFW 214
Query: 183 NMSRG 187
SRG
Sbjct: 215 EXSRG 219
>pdb|1RTW|A Chain A, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|B Chain B, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|C Chain C, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|D Chain D, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
Length = 220
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 4 QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
DY FV+ + F A + KA DD + + E+ F+K+A + G+ L+
Sbjct: 42 NDYYFVKNALRFXALLXAKA---PDDL---LPFFAESIYYISKELEXFEKKAQELGISLN 95
Query: 64 ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
+ +A + Y +L S+ S + T + E Y E++ E P QE
Sbjct: 96 GEIDWRA-KSYVNYLLSVASL-GSFLEGFTALYCEEKAYYEAWKWVRENLKERSP-YQEF 152
Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
W + FG+Y ++KI N L EK + + +V K+ V + E+ FW+
Sbjct: 153 INHWSSQEFGEYVKRIEKILNSLAEKHGE--FEKERAREVFKE-------VSKFELIFWD 203
Query: 184 MSRG 187
++ G
Sbjct: 204 IAYG 207
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 173
GQ H I N +LE+ + D ++GK VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERQTPDYVLGKIRAGVLEQGMVDLLR 57
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 173
GQ H I N +LE+ + D ++G+ VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERTTPDYVLGRIRAGVLEQGMVDLLR 57
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 173
GQ H I N +LE+ + D ++G+ VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERQTPDYVLGRIRGGVLEQGMVDLLR 57
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 92 ITVFWAIEAVYQESFAHCLEPDTNTPPE-LQEVCQRWGNDGFGQYCHSLKKI 142
I + ++ + E+F HC E DT T PE + V DG YC+SL +
Sbjct: 119 IPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVA-----DGXFSYCYSLHTV 165
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 4 QDYIFVREFVAFAASVLIKAWKESDDSEGDTEV--ILGGMAGLHDEIAWFKKEASKWGVE 61
QDY+F+ E+ A ++KA E+ E + IL +H+ + +E E
Sbjct: 49 QDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNH---YIRELQITQKE 105
Query: 62 LSETVPQKANQVYCRFL 78
L P AN+ Y ++
Sbjct: 106 LQNACPTLANKSYTSYM 122
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 2 QGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAW 50
GQ +++ F + LIK WKE +D + E L + ++AW
Sbjct: 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 37 ILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY 88
++ G G HD +A E G+++SE+ KAN+ Y SP+ +Y
Sbjct: 71 LVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGS------SPKAEY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,887,540
Number of Sequences: 62578
Number of extensions: 237532
Number of successful extensions: 638
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)