Query 029678
Match_columns 189
No_of_seqs 112 out of 831
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 16:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 1.3E-45 2.9E-50 294.8 19.7 172 1-188 40-217 (218)
2 PRK14713 multifunctional hydro 100.0 8.8E-40 1.9E-44 292.8 21.0 170 1-189 357-529 (530)
3 PRK09517 multifunctional thiam 100.0 7.1E-39 1.5E-43 296.6 20.8 167 1-188 583-752 (755)
4 PF03070 TENA_THI-4: TENA/THI- 100.0 1.5E-38 3.3E-43 253.1 17.3 171 1-187 33-209 (210)
5 PTZ00347 phosphomethylpyrimidi 100.0 3.3E-36 7.2E-41 268.4 19.7 165 1-188 50-219 (504)
6 KOG2598 Phosphomethylpyrimidin 99.9 1.8E-22 4E-27 172.0 13.4 167 1-187 350-521 (523)
7 COG5424 Pyrroloquinoline quino 96.9 0.027 5.8E-07 45.7 12.0 164 1-186 46-226 (242)
8 PRK05157 pyrroloquinoline quin 96.8 0.12 2.6E-06 42.4 14.8 154 1-187 48-229 (246)
9 TIGR02111 PQQ_syn_pqqC coenzym 96.3 0.16 3.4E-06 41.5 12.6 152 1-186 41-221 (239)
10 CHL00168 pbsA heme oxygenase; 88.2 9.8 0.00021 31.1 10.6 82 59-146 89-179 (238)
11 PF12981 DUF3865: Domain of Un 82.2 25 0.00054 28.4 11.6 134 37-184 72-225 (231)
12 COG3143 CheZ Chemotaxis protei 78.3 32 0.00068 27.2 9.8 89 53-151 33-129 (217)
13 PF14518 Haem_oxygenas_2: Iron 72.4 10 0.00022 26.3 4.9 36 48-83 19-58 (106)
14 cd00232 HemeO Heme oxygenase c 66.8 53 0.0012 25.4 8.4 86 56-146 82-174 (203)
15 PF06757 Ins_allergen_rp: Inse 62.5 32 0.00069 26.5 6.2 44 89-140 110-153 (179)
16 PRK13689 hypothetical protein; 58.4 47 0.001 22.1 5.4 52 125-176 5-66 (75)
17 cd07910 MiaE MiaE tRNA-modifyi 52.9 1.1E+02 0.0024 24.0 11.6 85 14-107 32-122 (180)
18 PRK11166 chemotaxis regulator 50.0 1.4E+02 0.0029 24.1 10.3 86 53-148 30-123 (214)
19 PF01320 Colicin_Pyocin: Colic 48.6 26 0.00056 24.0 3.2 40 124-177 7-46 (85)
20 PF02609 Exonuc_VII_S: Exonucl 41.0 83 0.0018 19.1 5.3 35 132-177 1-35 (53)
21 PF15565 Imm16: Immunity prote 38.8 57 0.0012 23.3 3.8 39 134-181 13-51 (106)
22 PF09539 DUF2385: Protein of u 38.0 76 0.0016 22.2 4.3 37 129-176 25-61 (96)
23 COG1722 XseB Exonuclease VII s 34.4 1.5E+02 0.0032 20.0 5.2 36 131-177 11-46 (81)
24 PF01099 Uteroglobin: Uteroglo 32.6 1.4E+02 0.0029 19.1 5.1 33 116-148 15-48 (67)
25 COG5398 Heme oxygenase [Inorga 32.2 35 0.00076 27.6 2.1 19 65-83 94-112 (238)
26 PRK14067 exodeoxyribonuclease 32.1 1.5E+02 0.0032 20.0 4.8 37 130-177 7-43 (80)
27 PF14118 YfzA: YfzA-like prote 31.8 46 0.001 23.2 2.3 23 117-139 51-73 (94)
28 TIGR02301 conserved hypothetic 31.6 1.2E+02 0.0026 22.2 4.6 34 132-176 53-86 (121)
29 PRK14068 exodeoxyribonuclease 30.4 1.7E+02 0.0036 19.5 5.0 37 130-177 6-42 (76)
30 PRK14064 exodeoxyribonuclease 28.3 1.8E+02 0.0039 19.2 5.0 37 130-177 6-42 (75)
31 PRK00977 exodeoxyribonuclease 28.2 1.9E+02 0.0041 19.4 5.0 37 130-177 10-46 (80)
32 PRK14066 exodeoxyribonuclease 25.7 2.1E+02 0.0045 19.0 5.0 36 131-177 5-40 (75)
33 PF13852 DUF4197: Protein of u 25.6 1.2E+02 0.0025 24.2 4.0 44 120-176 48-91 (202)
34 TIGR01280 xseB exodeoxyribonuc 24.8 2E+02 0.0043 18.5 5.0 36 131-177 2-37 (67)
35 PRK14069 exodeoxyribonuclease 24.0 2.6E+02 0.0056 19.5 5.0 37 130-177 8-44 (95)
36 PF05295 Luciferase_N: Lucifer 23.1 2E+02 0.0044 19.3 4.1 19 120-138 32-50 (82)
37 PRK08311 putative RNA polymera 22.7 1.2E+02 0.0026 24.7 3.6 20 45-64 131-150 (237)
38 TIGR02895 spore_sigI RNA polym 21.8 1.2E+02 0.0025 24.4 3.4 20 45-64 120-139 (218)
39 PRK13696 hypothetical protein; 21.0 2.4E+02 0.0052 18.1 4.9 37 116-152 9-52 (62)
40 PRK14063 exodeoxyribonuclease 20.8 2.6E+02 0.0057 18.5 5.0 37 130-177 5-41 (76)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=1.3e-45 Score=294.84 Aligned_cols=172 Identities=22% Similarity=0.274 Sum_probs=157.7
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCC---CCCCchhHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~-E~~~h~~~~~~~gi~~~---~~~~~p~~~aY~~ 76 (189)
||+|||+||.+|+|+++++++|+| + .+.+..+++.+..+.+ |+.+|+.+++++||+.+ +.+|+|+|++||+
T Consensus 40 YL~QDy~YL~~~~ra~~~~~~ka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ 114 (218)
T COG0819 40 YLVQDYLYLVNFARALALLASKAP---D--LELMEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTR 114 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHH
Confidence 899999999999999999999999 4 4668889999988876 99999999999999973 3689999999999
Q ss_pred HHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~ 154 (189)
||++++. ++..+++||+||+|+|.+||+.+.... ..+++++|++||++|+|++|++.|++++++||+++...++
T Consensus 115 ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~--~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~-- 190 (218)
T COG0819 115 YLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKP--RASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE-- 190 (218)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH--
Confidence 9999987 799999999999999999999887433 2247899999999999999999999999999999988887
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 155 ~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~ 188 (189)
+++++|++||+++|++|.+||||||+.
T Consensus 191 -------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 191 -------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999975
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=8.8e-40 Score=292.76 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=153.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~-~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~ 79 (189)
||+||++||.+|+|+++++++|+++ .+.+..+.+.+..+. .|+++|+.+++++|+ +.+++|+|++|++||+
T Consensus 357 Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aY~~~l~ 428 (530)
T PRK14713 357 YLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQSAQACLEVESELHRSWLGDRDA---DTAPSPVTLAYTDFLL 428 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cCCCChHHHHHHHHHH
Confidence 8999999999999999999999994 456888888887765 599999999999998 3689999999999999
Q ss_pred HhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 029678 80 SLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG 157 (189)
Q Consensus 80 ~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~ 157 (189)
+++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|+|++|.++|+++++++|+++..+++
T Consensus 429 ~~a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~--~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~----- 501 (530)
T PRK14713 429 ARAAGGSYAVGAAAVLPCFWLYAEVGAELHARA--GNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP----- 501 (530)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhhc--cCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH-----
Confidence 9866 888999999999999999999886321 1125789999999999999999999999999999988887
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 029678 158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 189 (189)
Q Consensus 158 ~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~~ 189 (189)
+++++|+++|+++|+||++||||||+++
T Consensus 502 ----~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 502 ----AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999875
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=7.1e-39 Score=296.57 Aligned_cols=167 Identities=15% Similarity=0.087 Sum_probs=151.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~-~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~ 79 (189)
||+|||+||++|+|+++++++|+|+ .+.+..+...+..+. +|+++|+.+++++|+ +.+++|+|++|++||+
T Consensus 583 YL~QD~~YL~~yar~~a~~~aka~~-----~~~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aYt~~l~ 654 (755)
T PRK09517 583 YIDQDAQYLRQYSRALARLSSIAPD-----SHAQVEWAQSAAECIVVEAELHRSYLSGKEA---PSAPSPVTMAYTDFLI 654 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CCCCChHHHHHHHHHH
Confidence 8999999999999999999999994 456888888887665 599999999999987 3688999999999999
Q ss_pred HhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 029678 80 SLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG 157 (189)
Q Consensus 80 ~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~ 157 (189)
+++. ++.++++||+||+|+|.++|+.+... . .++++|++||++|+|++|.++|+++++++|+++...++
T Consensus 655 ~~a~~g~~~~~laAllPC~w~Y~~ig~~l~~~---~-~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~----- 725 (755)
T PRK09517 655 ARTYTEDYVVGVAAVLPCYWLYAEIGLMLAEQ---N-HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP----- 725 (755)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---c-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH-----
Confidence 9866 78999999999999999999988631 2 24678999999999999999999999999999988887
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678 158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 158 ~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 726 ----~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 726 ----EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999975
No 4
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=1.5e-38 Score=253.13 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=150.7
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh-hHHHHHHHHHHHHHHhCCCCCC---CCCchhHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA-GLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~-~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+||++||.+|+|+++.+++|+|++ +.+..+...+. .+.+|+++|..+++++||+.++ .+|+|+|++|++
T Consensus 33 Yl~QD~~yl~~~~r~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~ 107 (210)
T PF03070_consen 33 YLIQDYHYLKHFARALALLASKAPDP-----EEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATRAYTD 107 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHH
Confidence 79999999999999999999999954 34544555554 4556999999999999999876 789999999999
Q ss_pred HHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~ 154 (189)
||.+++. ++.++++||+||.|+|..+|+.+..... ..++++|++||+.|++++|.+.|+++.+++|+++...++
T Consensus 108 ~l~~~a~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~--~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~-- 183 (210)
T PF03070_consen 108 FLLSLAQTGSLAEGLAALLPCEWIYAEIGKRLAEKLR--APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASD-- 183 (210)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHH--
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCH--
Confidence 9999866 7999999999999999999998874432 236799999999999999999999999999999988876
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 155 ~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~ 187 (189)
+++++++++|+++|++|++|||+||+
T Consensus 184 -------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 184 -------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999985
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.3e-36 Score=268.36 Aligned_cols=165 Identities=10% Similarity=0.135 Sum_probs=142.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~-E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~ 79 (189)
||+||++||++|+|+++++++|+++ .+++..+++.+..+.+ |+.+|+.+++. .+..+++|+|++|++||+
T Consensus 50 Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~ 120 (504)
T PTZ00347 50 YIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLLELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLL 120 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHH
Confidence 8999999999999999999999994 3557888888877765 77899999742 234678999999999999
Q ss_pred HhcC--Cc--hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhh
Q 029678 80 SLMS--PE--VDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 80 ~~a~--~~--~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
+++. ++ ..+++||+||+|+|.++|+.+.... ..+++++|++||++|+|++|.++|+++++++|+++..
T Consensus 121 ~~a~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~--~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~~------ 192 (504)
T PTZ00347 121 ASGNADTLGPSVVIAAVIPCARLYAWVGQELTNEV--ELTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIRP------ 192 (504)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhch------
Confidence 9877 56 7899999999999999999886321 1225789999999999999999999999999998642
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~ 188 (189)
+++++++++|+++|+||++||||||++
T Consensus 193 ------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 193 ------GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 567889999999999999999999974
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.89 E-value=1.8e-22 Score=171.99 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=144.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCC---CCCchhHHHHHHH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCRF 77 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~~ 77 (189)
|+.|||+||.+|+|+++....|.++. +++..-+...+.+.+|+..|.++++.||++..+ -+++|++++|.+|
T Consensus 350 ~l~qdy~ylIn~ara~~v~g~ks~~i-----~~ie~~~~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry 424 (523)
T KOG2598|consen 350 YLEQDYLYLINYARAHGVAGSKSPTI-----EDIEKEAVIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRY 424 (523)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcH-----HHHHHHhHHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHH
Confidence 78999999999999999999999955 346666666667778999999999999999875 2348999999999
Q ss_pred HHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhh
Q 029678 78 LESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 78 l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
+..+++ ++..+..|+.| |....+.+.... ..++.++|++|+++|++.++.+.++...+.++...+..++
T Consensus 425 ~~d~~~~g~~~~l~~a~~p----y~~~l~~lk~~~--~as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p--- 495 (523)
T KOG2598|consen 425 INDTGRRGNWQELVIALNP----YVFALDKLKDEI--TASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP--- 495 (523)
T ss_pred hhhhhcccChhhhhhhhch----hhHHHHHHHhhc--ccCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH---
Confidence 999987 78899999999 555666665332 2246789999999999999999999999999999999998
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~ 187 (189)
++.+.+..+|.++|++|..||+.++.
T Consensus 496 ------e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 496 ------EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999875
No 7
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=96.93 E-value=0.027 Score=45.66 Aligned_cols=164 Identities=13% Similarity=0.151 Sum_probs=98.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh----hHH--HHHHHHHHHHHHhCCCCCC---CCCchhH
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA----GLH--DEIAWFKKEASKWGVELSE---TVPQKAN 71 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~----~~~--~E~~~h~~~~~~~gi~~~~---~~~~p~~ 71 (189)
|++.-++|+++|.+.++.+++++++. +......+.+. +.. +=+++-.++...+|++.++ ..|.|.+
T Consensus 46 yvi~~~~~~k~~p~~lSail~rcdd~-----~~r~~~leni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~ 120 (242)
T COG5424 46 YVINRYYYQKNFPLYLSAILARCDDD-----DVRREWLENIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPST 120 (242)
T ss_pred HHHhhhHHHHhhhHHHHHHHhcCCcH-----hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHH
Confidence 67778899999999999999999954 23333333332 111 2357777888999999875 4699999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHH--------HHHHHHHHHHH
Q 029678 72 QVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGF--------GQYCHSLKKIA 143 (189)
Q Consensus 72 ~aY~~~l~~~a~~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f--------~~~v~~l~~~l 143 (189)
+.=+..-...+. -..+++++...+..+....+...... + +-+.|-.|++ ...-.| ..=+.+..+++
T Consensus 121 ~~av~~~~~~a~-~~s~~~~~aslyt~El~apri~~~ki-~---gl~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv 194 (242)
T COG5424 121 RFAVDTWVRFAT-EKSWLEGAASLYTYELVAPRISVEKI-S---GLPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIV 194 (242)
T ss_pred HHHHHHHHHHhc-chhHHHHHHHHHHHHhhccHHHHHHc-c---CchhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999998888775 33444555555555665655332111 1 1122333443 111111 12223334455
Q ss_pred HHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029678 144 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 186 (189)
Q Consensus 144 d~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay 186 (189)
.+++.+ .+...++.++-.++...=+.|-|..+
T Consensus 195 ~~~~~t-----------~E~~~~~~~~~~~~~D~lw~fLda~~ 226 (242)
T COG5424 195 LELAGT-----------RELQDQVLDALQKSLDVLWLFLDARM 226 (242)
T ss_pred HHHHhc-----------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544432 14456788888888888888877654
No 8
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=96.76 E-value=0.12 Score=42.40 Aligned_cols=154 Identities=7% Similarity=-0.027 Sum_probs=95.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH---------HHHHHHHHHHHhCCCCCC---C-CC
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD---------EIAWFKKEASKWGVELSE---T-VP 67 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~---------E~~~h~~~~~~~gi~~~~---~-~~ 67 (189)
|+.|=|+|-..+-+-.+-+++++|++ +....+.+ ++.+ -++...++.+.+|++.+. . ++
T Consensus 48 wa~nrYyyq~~~P~kdaaI~S~c~D~-----e~Rr~w~~---ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~ 119 (246)
T PRK05157 48 WVANRFYYQINIPLKDAAILSNCPDR-----ETRREWRQ---RILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGV 119 (246)
T ss_pred HHHHhchhhccchHHHHHHHHcCCCH-----HHHHHHHH---HHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccC
Confidence 34555777778888889999999944 33444443 3333 257899999999999865 2 46
Q ss_pred chhHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHH-------
Q 029678 68 QKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQY------- 135 (189)
Q Consensus 68 ~p~~~aY~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--s~~-f~~~------- 135 (189)
.|.|+..++-....+. ++.+++++++.-+..=.++.+.+ ..|-++|. +++ +.=|
T Consensus 120 lP~tr~aVday~~~~r~~~~~eavas~ltE~~~P~I~~~ri--------------~gl~~~Y~~~~~e~l~yF~~h~~~a 185 (246)
T PRK05157 120 LPGVRFAVDAYVNFARRAPWLEAVASSLTELFAPQIHQERL--------------AGWPEHYPWIDPEGLAYFRSRLTQA 185 (246)
T ss_pred ChHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHCCCCCHHHHHHHHHHhhcc
Confidence 7999888887777654 66777776655332222222222 23333333 222 2111
Q ss_pred ---HHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678 136 ---CHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 136 ---v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~ 187 (189)
|+...+++-+.+ .++ ++++++.++-...|..=+.|+|+-|.
T Consensus 186 ~~Dvehal~~~l~~~--~t~---------e~q~~al~al~~k~d~Lw~~LDai~~ 229 (246)
T PRK05157 186 PRDVEHGLAYVLDHA--TTR---------EQQERALEALQFKLDVLWSMLDALYM 229 (246)
T ss_pred chhHHHHHHHHHHHc--CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 133 77889999999999999999998653
No 9
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=96.30 E-value=0.16 Score=41.52 Aligned_cols=152 Identities=9% Similarity=0.033 Sum_probs=89.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH---------HHHHHHHHHHHhCCCCCC----CCC
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD---------EIAWFKKEASKWGVELSE----TVP 67 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~---------E~~~h~~~~~~~gi~~~~----~~~ 67 (189)
|..|-|+|-..+-+-.+-+.+++|++ +..+.+++ ++.+ -+++..++++..|++.+. ...
T Consensus 41 wa~nrYyyq~~iP~kdAAi~s~c~D~-----e~Rr~wl~---ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~~~ 112 (239)
T TIGR02111 41 WVLNRYYYQANIPLKDAAILARCPDP-----QLRRIWRQ---RILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGV 112 (239)
T ss_pred HHHHhhhhhhcccHHHHHHHHcCCCH-----HHHHHHHH---HHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCC
Confidence 34566788777888889999999943 33444443 3333 257899999999999864 234
Q ss_pred chhHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHHHHHH---
Q 029678 68 QKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQYCHSL--- 139 (189)
Q Consensus 68 ~p~~~aY~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--s~~-f~~~v~~l--- 139 (189)
.|.|+..++=....+. ++.+.+++++.=..+=.++.+++ ..|.++|. +++ +.=|-.++
T Consensus 113 lP~trfaVday~~f~r~~~~~eavasslTE~f~P~I~~~ri--------------~gl~~~Y~~~~~e~l~yF~~r~~qa 178 (239)
T TIGR02111 113 LPGTRFAVDAYVHFVREKSLLEAIASSLTELFAPQIHSERV--------------AGMLQHYDFIDDAALAYFRKRLTQA 178 (239)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHH--------------HhHHHHCCCCCHHHHHHHHHHHhhh
Confidence 7888755554444333 67777777554222222222222 23333332 233 11111111
Q ss_pred -HHH-------HHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029678 140 -KKI-------ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 186 (189)
Q Consensus 140 -~~~-------ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay 186 (189)
+++ ++.+ .++ ++++++.++-...|..=+.|.|.-|
T Consensus 179 ~rd~e~~l~~~l~~~---~t~---------e~Q~~~l~al~fk~dvLw~~LDal~ 221 (239)
T TIGR02111 179 PRDVEFGLDYVLDHA---TTR---------EKQEAALEALTFKCDVLWAQLDALY 221 (239)
T ss_pred HHHHHHHHHHHHHHc---CCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2221 133 6788899999999999999999765
No 10
>CHL00168 pbsA heme oxygenase; Provisional
Probab=88.20 E-value=9.8 Score=31.12 Aligned_cols=82 Identities=7% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCCCCC-CCCchhHHHHHHHHHHhcCCchhHHHHHHH-HHHHH-------HHHHHHHhcccCCCCCCChhHHHHHHhhCC
Q 029678 59 GVELSE-TVPQKANQVYCRFLESLMSPEVDYTVAITV-FWAIE-------AVYQESFAHCLEPDTNTPPELQEVCQRWGN 129 (189)
Q Consensus 59 gi~~~~-~~~~p~~~aY~~~l~~~a~~~~~~~~al~p-c~~~y-------~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s 129 (189)
|-+..+ ++|+|++..|++++.+++.+.. .++++ |+..| +.|.+.+.+.. +.+++. =-.+-+++.-
T Consensus 89 G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P---~~LvAH~YvrYLGdlsGGQiI~k~l~r~~--gl~~~~-G~~Fy~F~~i 162 (238)
T CHL00168 89 GDDWKSIIEPSPATKIYVDRIHKISAKKP---ELLIAHAYTRYLGDLSGGQILKKIAQRAM--NLSDSG-GLAFYDFDNI 162 (238)
T ss_pred CCCccccCCCChHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccccHHHHHHHHHHh--CCCCCc-CccccCCCCc
Confidence 544433 6889999999999999876332 34555 55566 34433332221 111110 0123333332
Q ss_pred hHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRL 146 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~ 146 (189)
++-..+.+..++.+|++
T Consensus 163 ~~~~~fk~~yr~~Ld~l 179 (238)
T CHL00168 163 EDDQEFKQIYKAALDNL 179 (238)
T ss_pred CcHHHHHHHHHHHHhcC
Confidence 44578888888888865
No 11
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=82.22 E-value=25 Score=28.43 Aligned_cols=134 Identities=10% Similarity=0.184 Sum_probs=72.4
Q ss_pred HHHHHhhHHHHHH----------HHHHHHHH-hCCCCCCCCCchhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH----
Q 029678 37 ILGGMAGLHDEIA----------WFKKEASK-WGVELSETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEA---- 100 (189)
Q Consensus 37 l~~~~~~~~~E~~----------~h~~~~~~-~gi~~~~~~~~p~~~aY~~~l~~~a~-~~~~~~~al~pc~~~y~---- 100 (189)
..+...++.+|+. +++.-+.. +|.+.....|+++|.....-+..+.. +. -.+|=.|+.++.
T Consensus 72 ~~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~---s~vlGa~YAtE~~AIp 148 (231)
T PF12981_consen 72 AQELQRNINEEMGEGCGKISHYVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDS---SEVLGACYATEAAAIP 148 (231)
T ss_dssp HHHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHH
Confidence 3445567777886 56665554 89998889999999999999988865 33 223334444432
Q ss_pred --HHHHHHhcccCCCCC--CChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHH
Q 029678 101 --VYQESFAHCLEPDTN--TPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 101 --~~~~~~~~~~~~~~~--~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
.....+........+ -+...-+|.+.+-+.-=.+-.+.+++.++...... +++...++=|+.++.
T Consensus 149 El~ll~ei~~~la~rk~~~~~~s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~e-----------~q~~~f~~Gf~~mI~ 217 (231)
T PF12981_consen 149 ELQLLYEIVNELAQRKGLHNSWSQLDFYDWHLDGTEQEHKDGLRQFLASYIDTE-----------EQMPLFKDGFLAMID 217 (231)
T ss_dssp HHHHHHHHHTTT---HHHHH------HHHHHCS----HHHHHHHHHHHTT--GG-----------G-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCcchhhhHHHHHhcchHHHHHHHHHHHHHHHHcCcc-----------hhHHHHHHHHHHHHH
Confidence 222233221111000 01122266777776666778888888888654321 457788999999999
Q ss_pred HHHHHhHh
Q 029678 177 HEVEFWNM 184 (189)
Q Consensus 177 lE~~FWd~ 184 (189)
.=..||+.
T Consensus 218 ~m~~wW~~ 225 (231)
T PF12981_consen 218 IMEDWWKE 225 (231)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88889975
No 12
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=78.29 E-value=32 Score=27.22 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=54.9
Q ss_pred HHHHHhCCCCCC------CCCchhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 029678 53 KEASKWGVELSE------TVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ 125 (189)
Q Consensus 53 ~~~~~~gi~~~~------~~~~p~~~aY~~~l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~ 125 (189)
+.++++||+... +|-...-..|+-.|...|. -..+.+.+-.|.- -..+.... .-...+++|.+
T Consensus 33 eslrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P~q---d~L~~~a~-------~l~~rWq~wm~ 102 (217)
T COG3143 33 ESLRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAERALNAVEASQPHQ---DQLEKSAK-------ALTQRWQDWMA 102 (217)
T ss_pred HHHHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhchHH---HHHHHHHH-------HHHHHHHHHHc
Confidence 456788998742 4556667788888888765 4455555555532 22222111 01345677777
Q ss_pred hhCC-hHHHHHHHHHHHHHHHHHhhcc
Q 029678 126 RWGN-DGFGQYCHSLKKIANRLLEKAS 151 (189)
Q Consensus 126 ~y~s-~~f~~~v~~l~~~ld~~~~~~~ 151 (189)
.=-+ ++|.+.|...++.+-..-...+
T Consensus 103 ~~i~~~~~r~Lv~~t~~fL~~vp~~t~ 129 (217)
T COG3143 103 RPIDLDDARELVTDTRQFLADVPQHTS 129 (217)
T ss_pred CccchHHHHHHHHHHHHHHHhcccchh
Confidence 6654 6799999999888877554444
No 13
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=72.37 E-value=10 Score=26.26 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCC----CCCchhHHHHHHHHHHhcC
Q 029678 48 IAWFKKEASKWGVELSE----TVPQKANQVYCRFLESLMS 83 (189)
Q Consensus 48 ~~~h~~~~~~~gi~~~~----~~~~p~~~aY~~~l~~~a~ 83 (189)
..+|+++++.+|++.+. ..+.|.+.++.+.+...+.
T Consensus 19 ~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~ 58 (106)
T PF14518_consen 19 PELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCL 58 (106)
T ss_dssp HHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcc
Confidence 36889999999999862 3456889999998887643
No 14
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=66.76 E-value=53 Score=25.44 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=44.1
Q ss_pred HHhCCCCCC--CCCchhHHHHHHHHHHhcC-CchhHHHHHHHHHHH----HHHHHHHHhcccCCCCCCChhHHHHHHhhC
Q 029678 56 SKWGVELSE--TVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAI----EAVYQESFAHCLEPDTNTPPELQEVCQRWG 128 (189)
Q Consensus 56 ~~~gi~~~~--~~~~p~~~aY~~~l~~~a~-~~~~~~~al~pc~~~----y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~ 128 (189)
+.+|.+... .+|.|++ .|.+++...+. +...++..+.+...+ =+.|.+.+.... +. ++.. -.+...|+
T Consensus 82 ~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~--~~-~~~~-~~f~~~~g 156 (203)
T cd00232 82 AYLGGSDWRVREPPLPAA-AYAARLREIAEENPALLLGHAYVRYGADLSGGQVLAKIAQRAL--LL-EGKG-LAFYAFHG 156 (203)
T ss_pred HHHhCCCccccCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHh--CC-CCcc-CccccCCC
Confidence 345665433 3456677 99998887654 444444444433321 122333333211 11 1111 24566666
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 029678 129 NDGFGQYCHSLKKIANRL 146 (189)
Q Consensus 129 s~~f~~~v~~l~~~ld~~ 146 (189)
.++-...-..++..+|++
T Consensus 157 ~~~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 157 IADRGLFKREFREALDAL 174 (203)
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 455566667777778865
No 15
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=62.45 E-value=32 Score=26.55 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHH
Q 029678 89 TVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLK 140 (189)
Q Consensus 89 ~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~ 140 (189)
+.+++|---..+.+-++++ +++.|+++++.-.|++|++.++.+.
T Consensus 110 i~~~lP~~~l~aL~~~K~~--------~s~~F~~f~~~l~S~ef~~~~~~~~ 153 (179)
T PF06757_consen 110 ILALLPRDKLRALYEEKLA--------TSPEFAEFVEALRSPEFQQLYNALW 153 (179)
T ss_pred HHHHCCHHHHHHHHHHHHH--------CCHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4577887777777776655 4688999999999999999888664
No 16
>PRK13689 hypothetical protein; Provisional
Probab=58.44 E-value=47 Score=22.14 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=39.1
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHhh----------cchhhhhcccchHHHHHHHHHHHHHHH
Q 029678 125 QRWGNDGFGQYCHSLKKIANRLLEK----------ASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 125 ~~y~s~~f~~~v~~l~~~ld~~~~~----------~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
.-|+++-+.+...++..++++.-.. ...+++.+.++.++++.+.+.|.+++.
T Consensus 5 SKYsd~qvE~il~el~~VLeKH~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKHKAPTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFARALQ 66 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 3588888999999999999974211 111345677888999999999998764
No 17
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=52.87 E-value=1.1e+02 Score=23.97 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=53.8
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHhhH-HHHHHHHHHHH---HHhCCCCCCCCCchhHHHHHHHHHHhcC--Cchh
Q 029678 14 AFAASVLIKAWKESDDSEGDTEVILGGMAGL-HDEIAWFKKEA---SKWGVELSETVPQKANQVYCRFLESLMS--PEVD 87 (189)
Q Consensus 14 r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~-~~E~~~h~~~~---~~~gi~~~~~~~~p~~~aY~~~l~~~a~--~~~~ 87 (189)
|+-+.+++....-.+ ..-+...+..+ .+|+..|+... ++.|+......++| |.+-|..... ...-
T Consensus 32 KAA~~A~~L~~rY~~-----~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~----Ya~~L~k~vR~~~p~~ 102 (180)
T cd07910 32 KAASSAMSLIFRYPE-----KPELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDP----YASGLRKLVRKGEPER 102 (180)
T ss_pred HHHHHHHHHHHHcCC-----cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHHHcccCChHH
Confidence 455555555433223 23344555544 46999998854 67899886666665 6676666544 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029678 88 YTVAITVFWAIEAVYQESFA 107 (189)
Q Consensus 88 ~~~al~pc~~~y~~~~~~~~ 107 (189)
++--|+.+-.+++-=.++++
T Consensus 103 llD~Llv~alIEARScERF~ 122 (180)
T cd07910 103 LLDRLLVAALIEARSCERFA 122 (180)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 77788888888876666664
No 18
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=49.96 E-value=1.4e+02 Score=24.14 Aligned_cols=86 Identities=6% Similarity=-0.036 Sum_probs=47.7
Q ss_pred HHHHHhCCCCC------CCCCchhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 029678 53 KEASKWGVELS------ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ 125 (189)
Q Consensus 53 ~~~~~~gi~~~------~~~~~p~~~aY~~~l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~ 125 (189)
+.++++|++.. .+|-......|+-=|...|+ ...+.+.+..|.----..=...+ ...+..|..
T Consensus 30 dsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L----------~~~w~~l~~ 99 (214)
T PRK11166 30 DSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKAL----------DARWDEWFA 99 (214)
T ss_pred HHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHc
Confidence 34567888753 25555667777777777655 56667777777633211111111 122334444
Q ss_pred hhC-ChHHHHHHHHHHHHHHHHHh
Q 029678 126 RWG-NDGFGQYCHSLKKIANRLLE 148 (189)
Q Consensus 126 ~y~-s~~f~~~v~~l~~~ld~~~~ 148 (189)
.=. .++|...+......+.+...
T Consensus 100 ~~~~~~e~~~L~~~~~~fL~~v~~ 123 (214)
T PRK11166 100 NPIELADARELVTDTRAFLADVPE 123 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHh
Confidence 322 36688888777777776543
No 19
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=48.64 E-value=26 Score=24.03 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 124 i~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
|+.|+-.+|.++|..+.+.- ..++ ++...+.+.|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 45566677766666655321 1222 5566777777766653
No 20
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=41.00 E-value=83 Score=19.11 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 132 f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
|.+...++.++++++-..-. -++...+.|.+++.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~-----------sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGEL-----------SLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCC-----------CHHHHHHHHHHHHHH
Confidence 67788889999988754333 255666677766654
No 21
>PF15565 Imm16: Immunity protein 16
Probab=38.78 E-value=57 Score=23.28 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 029678 134 QYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 181 (189)
Q Consensus 134 ~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~F 181 (189)
+-++.....+++++...+. +....+..+|--.++.|.+|
T Consensus 13 ~e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 13 EECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 3467777778877777666 56667777777777777666
No 22
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=37.95 E-value=76 Score=22.25 Aligned_cols=37 Identities=5% Similarity=0.052 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHH
Q 029678 129 NDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 129 s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
+++=+.|=+.+.++|+- +.+++ ..+++|.+.|-++-+
T Consensus 25 ~~~~~~WR~~M~~Ll~~--E~p~~---------~rR~rl~~aFN~GYr 61 (96)
T PF09539_consen 25 GNEDQYWRDRMQALLDA--EAPDE---------ARRARLIAAFNRGYR 61 (96)
T ss_pred CCCcchHHHHHHHHHHh--cCCCH---------HHHHHHHHHHHHHHH
Confidence 34444556678888884 44554 788999999988754
No 23
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=34.38 E-value=1.5e+02 Score=20.05 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+....|..+|.++=... -.++.....|.+++.|
T Consensus 11 sfE~~l~eLE~IV~~LE~Ge-----------l~Le~sl~~~erG~~L 46 (81)
T COG1722 11 SFEEALAELEEIVESLESGE-----------LPLEEALKEFERGMAL 46 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCc-----------ccHHHHHHHHHHHHHH
Confidence 69999999999999874322 2356677777777655
No 24
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=32.58 E-value=1.4e+02 Score=19.10 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=24.5
Q ss_pred CChhHHHHHHhhCC-hHHHHHHHHHHHHHHHHHh
Q 029678 116 TPPELQEVCQRWGN-DGFGQYCHSLKKIANRLLE 148 (189)
Q Consensus 116 ~~~~y~~Wi~~y~s-~~f~~~v~~l~~~ld~~~~ 148 (189)
+...|..-+..|.. |+-.+.+..+++-+|.+..
T Consensus 15 s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~ 48 (67)
T PF01099_consen 15 SPEEYKESLQKYNPPPEAVEAKLELKQCVDKLSN 48 (67)
T ss_dssp -HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-H
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCH
Confidence 56889999999995 6678999999999995543
No 25
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=32.24 E-value=35 Score=27.55 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=17.1
Q ss_pred CCCchhHHHHHHHHHHhcC
Q 029678 65 TVPQKANQVYCRFLESLMS 83 (189)
Q Consensus 65 ~~~~p~~~aY~~~l~~~a~ 83 (189)
+.|+|.+.+|++++.+++.
T Consensus 94 I~~sp~t~~yv~rv~~iaa 112 (238)
T COG5398 94 IQPSPATIAYVDRVRYIAA 112 (238)
T ss_pred cCcChhHHHHHHHHHHHHh
Confidence 6889999999999999765
No 26
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.09 E-value=1.5e+02 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..-.+ ++...+.|.+++.|
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~l~-----------Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGDLP-----------LEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 46899999999999987543322 44555566655544
No 27
>PF14118 YfzA: YfzA-like protein
Probab=31.78 E-value=46 Score=23.18 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=18.6
Q ss_pred ChhHHHHHHhhCChHHHHHHHHH
Q 029678 117 PPELQEVCQRWGNDGFGQYCHSL 139 (189)
Q Consensus 117 ~~~y~~Wi~~y~s~~f~~~v~~l 139 (189)
.+++.+|+..|.+|.|.-+.--.
T Consensus 51 l~~FteW~t~Y~~p~fN~~Tv~~ 73 (94)
T PF14118_consen 51 LKFFTEWFTPYKSPQFNLFTVFF 73 (94)
T ss_pred CHHHHhhcccccCchhhhHHHHH
Confidence 36899999999999997665544
No 28
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=31.64 E-value=1.2e+02 Score=22.16 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHH
Q 029678 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 132 f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
=+.|-+.+.++||. +..++ .++++|.+.|.++-+
T Consensus 53 ~~~WR~~M~~Ll~a--E~p~~---------~rR~rl~~aFNrGYr 86 (121)
T TIGR02301 53 DDYWRSRMQALIDA--ETADE---------ERRARMTAAFNRGYR 86 (121)
T ss_pred chHHHHHHHHHHHh--hCCCh---------hHHHHHHHHHHHHHH
Confidence 34455677778884 34454 788999999988753
No 29
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.38 E-value=1.7e+02 Score=19.49 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..-.+ ++.....|.+++.|
T Consensus 6 ~sfEeal~~Le~IV~~LE~gdl~-----------Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNETVS-----------LEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHH
Confidence 46899999999999987543332 45566666666554
No 30
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.29 E-value=1.8e+02 Score=19.23 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-....+ ++...+.|.+++.|
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~-----------Leesl~~ye~G~~L 42 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSAS-----------LEDSLDMYQKGIEL 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 36889999999999987543322 45566666666554
No 31
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.22 E-value=1.9e+02 Score=19.36 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-....+ ++.....|.+++.|
T Consensus 10 ~sfEea~~~LEeIv~~LE~~~l~-----------Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESGDLP-----------LEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 46899999999999987543322 45566666666654
No 32
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.69 E-value=2.1e+02 Score=18.98 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+...+|..+|+++-...-+ ++.....|.+++.|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~-----------Leesl~lyeeG~~L 40 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELS-----------LDDSLKAFEEGVKH 40 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 4889999999999987443222 44556666666554
No 33
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=25.60 E-value=1.2e+02 Score=24.24 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=30.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHH
Q 029678 120 LQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 120 y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
.+.--..-.+-.....++++...+|+.++.+.+ +...+|..+++
T Consensus 48 l~~~~~~Lr~~G~~~~~d~l~~smNrAAe~A~~-------------~A~~if~~AI~ 91 (202)
T PF13852_consen 48 LQKVESTLRKIGLGSQVDDLELSMNRAAEAAVP-------------EAAPIFVDAIK 91 (202)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 333333344446679999999999999987765 56677766643
No 34
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=24.80 E-value=2e+02 Score=18.52 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+...++..+|+++=....+ ++.....|.+++.|
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~l~-----------Leesl~lyeeG~~L 37 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGDLA-----------LEEALNLFERGMAL 37 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 3778888899999887433222 45566666666554
No 35
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.00 E-value=2.6e+02 Score=19.53 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-....+ ++.....|.+++.|
T Consensus 8 ~sFEeal~~LEeIV~~LEsgdl~-----------LEesl~lyeeGv~L 44 (95)
T PRK14069 8 ISFEDALRELEQIAEKLERQDFS-----------LEESLKAYERGMEL 44 (95)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 46899999999999987543322 44556666666544
No 36
>PF05295 Luciferase_N: Luciferase/LBP N-terminal domain; InterPro: IPR007959 Proteins in this entry belong to a family of dinoflagellate luciferase and luciferin binding proteins. Luciferase is involved in catalysing the light emitting reaction in bioluminescence and luciferin binding protein (LBP) is known to bind to luciferin (the substrate for luciferase) to stop it reacting with the enzyme and therefore switching off the bioluminescence function. The expression of these two proteins is controlled by a circadian clock at the translational level, with synthesis and degradation occurring on a daily basis []. This entry consists of a presumed N-terminal domain that is conserved between dinoflagellate luciferase and luciferin binding proteins. This domain is not, however, the catalytic part of the protein. It has been suggested that this region may mediate an interaction between LBP and Luciferase or their association with the vacuolar membrane []. More information about these proteins can be found at Protein of the Month: Luciferase [].
Probab=23.13 E-value=2e+02 Score=19.28 Aligned_cols=19 Identities=5% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHhhCChHHHHHHHH
Q 029678 120 LQEVCQRWGNDGFGQYCHS 138 (189)
Q Consensus 120 y~~Wi~~y~s~~f~~~v~~ 138 (189)
-.+|.+.|++.+|...|+.
T Consensus 32 vsDFAn~WTs~eyE~Gvqd 50 (82)
T PF05295_consen 32 VSDFANYWTSAEYEKGVQD 50 (82)
T ss_pred HHHHHhhhhHHHHHhhhHH
Confidence 4689999999999988874
No 37
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=22.67 E-value=1.2e+02 Score=24.66 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q 029678 45 HDEIAWFKKEASKWGVELSE 64 (189)
Q Consensus 45 ~~E~~~h~~~~~~~gi~~~~ 64 (189)
..|+..|...+++|||+.++
T Consensus 131 ~~ei~~~~~~L~~~gi~~~d 150 (237)
T PRK08311 131 REEIEEFKKELKEFGITFED 150 (237)
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 45999999999999999876
No 38
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=21.77 E-value=1.2e+02 Score=24.42 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q 029678 45 HDEIAWFKKEASKWGVELSE 64 (189)
Q Consensus 45 ~~E~~~h~~~~~~~gi~~~~ 64 (189)
..|+..|...+++|||+.++
T Consensus 120 ~eEI~~~~~~L~~~gi~~~d 139 (218)
T TIGR02895 120 RLEILEYKKLLKQFGIEFVE 139 (218)
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 35999999999999999876
No 39
>PRK13696 hypothetical protein; Provisional
Probab=20.97 E-value=2.4e+02 Score=18.08 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.5
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHH-------HHHHHHHhhcch
Q 029678 116 TPPELQEVCQRWGNDGFGQYCHSLK-------KIANRLLEKASD 152 (189)
Q Consensus 116 ~~~~y~~Wi~~y~s~~f~~~v~~l~-------~~ld~~~~~~~~ 152 (189)
++.-|......-.+..|.+++.+|. +.+-..+...++
T Consensus 9 ~dd~Y~~L~~kk~~~SFSevi~~L~~~~~~~~~~l~~~~Gil~d 52 (62)
T PRK13696 9 SDDVYEKLLEIKGDKSFSEVIRELIEKKKGNLDKLMKAFGILSE 52 (62)
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHhhccHHHHHHHHCCCCH
Confidence 3566777777778888999999888 444445544444
No 40
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.81 E-value=2.6e+02 Score=18.47 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHH
Q 029678 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++=....+ ++.....|.+++.|
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~~l~-----------Leesl~lyeeG~~L 41 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQGDVP-----------LEEAISYFKEGMEL 41 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 45888999999999987543322 44555566655544
Done!