Query 029678
Match_columns 189
No_of_seqs 104 out of 831
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:14:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029678.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2300-2303//hhsearch_pdb/029678hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rm5_A Hydroxymethylpyrimidine 1.0 1 1 278.8 20.5 172 1-188 371-549 (550)
2 3no6_A Transcriptional activat 1.0 1 1 273.7 14.8 171 1-188 59-237 (248)
3 3ibx_A TENA, HP1287, putative 1.0 1 1 269.9 16.1 172 1-188 44-221 (221)
4 3mvu_A TENA family transcripti 1.0 1 1 267.6 17.1 169 1-188 46-226 (226)
5 4fn6_A Thiaminase-2, thiaminas 1.0 1 1 265.2 14.6 171 1-188 40-218 (229)
6 2qcx_A Transcriptional activat 1.0 1 1 258.3 20.9 170 1-188 67-242 (263)
7 2f2g_A SEED maturation protein 1.0 1 1 253.0 16.5 175 1-188 43-220 (221)
8 2gm8_A TENA homolog/THI-4 thia 1.0 1 1 251.3 16.3 167 1-188 48-220 (221)
9 1z72_A Transcriptional regulat 1.0 1 1 250.1 17.5 166 1-187 53-224 (225)
10 1rtw_A Transcriptional activat 1.0 1 1 248.8 18.8 165 1-188 39-208 (220)
No 1
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=278.83 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=153.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC-CCC---CCCCCHHHHHHH
Q ss_conf 92124999999999999997210477889732699999888559999999999-9997099-988---887745679999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKK-EASKWGV-ELS---ETVPQKANQVYC 75 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~-~~~~~gi-~~~---~~~~~p~~~aY~ 75 (189)
||+|||+||.+|+|+++++++|++++ +++..+...+.++.+|+.+|+. +++++|| +.+ ..+++|+|++|+
T Consensus 371 YL~QD~~yL~~far~~a~a~aka~~~-----~~~~~~~~~~~~i~~E~~~h~~~~~~~~gi~~~~~~~~~~~~p~~~aYt 445 (550)
T 3rm5_A 371 FIEQDYAYLVDYARVHCIAGSKAPCL-----EDMEKELVIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPALRAYS 445 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTTTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999998729999-----9999999999999999999999999983999978884068987999999
Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99997359--9536999999999999999998721459999998169999874179679999999999999997322624
Q 029678 76 RFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDD 153 (189)
Q Consensus 76 ~~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~ 153 (189)
+||++++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|+|++|.++|+++++++|+++..+++
T Consensus 446 ~~l~~~a~~g~~~~~~aAl~pC~~~Y~~ig~~l~~~~--~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~~~- 522 (550)
T 3rm5_A 446 RYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKV--TAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPP- 522 (550)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTCC--CSCTTSHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTSCG-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH-
T ss_conf 9999987269999999999999999999999997435--7889834799999718898999999999999998744899-
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 43033406899999999999999999875753358
Q 029678 154 LIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 154 ~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
+++++|+++|+++++||++||||||+-
T Consensus 523 --------~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 549 (550)
T 3rm5_A 523 --------EQLDTLVTIYAEVCELETNFWTAALEY 549 (550)
T ss_dssp --------GGHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --------999999999999999999999976505
No 2
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=1.00 E-value=1 Score=273.73 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCC----CCCCCHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-99999999997099988----887745679999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELS----ETVPQKANQVYC 75 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~----~~~~~p~~~aY~ 75 (189)
||+||++||.+|+|+++++++|+|++ +++..+.+.+.++.+ |+++|+.+++++||+.+ ..+++|+|++|+
T Consensus 59 YL~QD~~YL~~far~~a~a~aka~~~-----~~~~~~~~~~~~~~~~E~~lh~~~~~~~gi~~~~~~~~~~~~p~~~aYt 133 (248)
T 3no6_A 59 YLRADASYLKEFTNIYAMLIPKMSSM-----EDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYI 133 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSCH-----HHHHHHHHHHHHHHTCCCHHHHHHHHHTTSCHHHHCCSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999849999-----9999999999999999999999999981999889866357988999999
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99997359---953699999999999999999872145999999816999987417967999999999999999732262
Q 029678 76 RFLESLMS---PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 152 (189)
Q Consensus 76 ~~l~~~~~---~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~ 152 (189)
+||++++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|+ |+|.++|+++++++|+++..+++
T Consensus 134 ~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~--~~~~~~~Y~~WI~~Y~-~ef~~~v~~~~~~ld~~~~~~s~ 210 (248)
T 3no6_A 134 KHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDP--KLNKESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSE 210 (248)
T ss_dssp HHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCT--TCCTTSTTHHHHHHHH-HHTHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999984489999999999999999999999998657--8888735899999988-99999999999999998604889
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 443033406899999999999999999875753358
Q 029678 153 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
+++++|.++|+++++||++||||||+.
T Consensus 211 ---------~~~~~l~~~F~~a~~lE~~Fwd~ay~~ 237 (248)
T 3no6_A 211 ---------TEKKEIKENFLQSTIHERHFFNMAYIN 237 (248)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------999999999999999999999987411
No 3
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=1.00 E-value=1 Score=269.87 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888---877456799999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+||++||.+|+|+++++++|+|++ +.+..+.+.+.++.+ |+.+|+.+++++|++.++ .+|+|+|++|++
T Consensus 44 YL~QD~~yl~~~~r~~a~~~aka~~~-----~~~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~aY~~ 118 (221)
T 3ibx_A 44 YIIQDYLYLLEYAKVFALGVVKACDE-----AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTS 118 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHSCTTSHHHHHHHHTTCCHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99986999999999999998869899-----9999999999999999999999999980989888864668879999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~ 154 (189)
||++++. ++.++++||+||.|+|.++|+.+.... ...++++|++||++|+||+|.++|+++++++|+++..+++
T Consensus 119 ~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~--~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~-- 194 (221)
T 3ibx_A 119 YMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIP--NALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSK-- 194 (221)
T ss_dssp HHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSS--STTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH--
T ss_conf 999998369999999999999999999999998617--8899976899998709889999999999999998725999--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3033406899999999999999999875753358
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
+++++|+++|+++++||++||||||++
T Consensus 195 -------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 221 (221)
T 3ibx_A 195 -------QEIEKLKEIFITTSEYEYLFWDMAYQS 221 (221)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -------999999999999999999999977609
No 4
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=1.00 E-value=1 Score=267.61 Aligned_cols=169 Identities=18% Similarity=0.217 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888---877456799999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+||++||.+|+|+++++++|+|++ +.+..+.+.+.++.+ |+.+|+.+++++|++.++ .+++|+|.+|++
T Consensus 46 YL~QD~~yl~~~~r~~a~~~aka~~~-----~~~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~aY~~ 120 (226)
T 3mvu_A 46 YLQQDYVFLIHFSRAWALAVVKSETH-----SEMLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLAYTR 120 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSH-----HHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99987999999999999998749999-----9999999999999999999999999983989899864778879999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HHHH-
Q ss_conf 9997359--9536999999999999999998721459999998169999874179679999999999999-----9973-
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIAN-----RLLE- 148 (189)
Q Consensus 77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d-----~~~~- 148 (189)
||++++. ++.++++||+||.|+|.++|+.+.... ++++|++||++|+||+|.++|+++++++| +++.
T Consensus 121 ~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~-----~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~ 195 (226)
T 3mvu_A 121 FVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAEA-----TSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAE 195 (226)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC-----SCSTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999998249999999999999999999999998607-----899636899871988899999999998785158887552
Q ss_pred HCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2262443033406899999999999999999875753358
Q 029678 149 KASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
.+++ +++++|.++|+++++||++||||||+.
T Consensus 196 ~~~~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 226 (226)
T 3mvu_A 196 FTSS---------PRWSRLCQTFHTATELEVGFWQMGLTP 226 (226)
T ss_dssp GGGS---------HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCH---------HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0586---------999999999999999999999841059
No 5
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=265.20 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC----CCCCHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888----87745679999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE----TVPQKANQVYC 75 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~----~~~~p~~~aY~ 75 (189)
||+||++||.+|+|+++++++|+|++ +.+..+.+.+.++.+ |+.+|+.+++++|++.++ .+|+|+|.+|+
T Consensus 40 YL~QDy~yl~~~~r~~a~~~aka~~~-----~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~~~~~p~~~aY~ 114 (229)
T 4fn6_A 40 YLQADAAYLKEFTNLYALLIPKMNSM-----NDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYI 114 (229)
T ss_dssp HHHHHHHTHHHHHHHHHHHSTTCCSH-----HHHHHHHHHHHHHHSCCCHHHHHHHHHHTSCHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999869999-----9999999999999999999999999882999889866467987999999
Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99997359---953699999999999999999872145999999816999987417967999999999999999732262
Q 029678 76 RFLESLMS---PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 152 (189)
Q Consensus 76 ~~l~~~~~---~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~ 152 (189)
+||++++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|+ ++|.++|+++++++|+++..+++
T Consensus 115 ~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~--~~~~~~~y~~WI~~y~-~~f~~~v~~~~~~ld~~~~~~~~ 191 (229)
T 4fn6_A 115 KHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDH--KLNREKDTAKWFDFYS-TEMDDIINVFESLMNKLAESMSD 191 (229)
T ss_dssp HHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCT--TCCTTSTHHHHHHHHT-TTTHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999985169999999999999999999999998727--8889972899999986-99999999999999998754999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 443033406899999999999999999875753358
Q 029678 153 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
+++++|.++|+++++||++||||||++
T Consensus 192 ---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 218 (229)
T 4fn6_A 192 ---------KELEQVKQVFLESCIHERRFFNMAMTL 218 (229)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---------999999999999999999999987610
No 6
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=1.00 E-value=1 Score=258.26 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888---877456799999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+|||+||.+|+|+++++++|+|++ +.+..+...+..+.+ |+.+|+.+++++||+.++ .+|+|+|++|++
T Consensus 67 YL~QDy~yL~~f~r~la~a~aka~~~-----~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~l~~~~~~pat~aYt~ 141 (263)
T 2qcx_A 67 YVLQDSYYLTHFAKVQSFGAAYAKDL-----YTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSFTS 141 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99988999999999999999859998-----9999999999999999999999999985999999852789869999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~ 154 (189)
||++++. ++.++++||+||.|+|.++|+.+.... .++++|++||++|++++|.+.|+++++++|+++..+++
T Consensus 142 ~l~~~a~~g~~~~~laAl~pC~w~Y~~ig~~l~~~~----~~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~-- 215 (263)
T 2qcx_A 142 HMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCD----PGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTE-- 215 (263)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTCC----CCSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH--
T ss_conf 999988249999999999999999999999998546----89837999999858888999999999999998865999--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3033406899999999999999999875753358
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
++++++.++|+++++||++||||||+.
T Consensus 216 -------~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 242 (263)
T 2qcx_A 216 -------EVRAKMKENFVISSYYEYQFWGMAYRK 242 (263)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -------999999999999999999999987340
No 7
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=1.00 E-value=1 Score=252.98 Aligned_cols=175 Identities=53% Similarity=0.811 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 92124999999999999997210477889732699999888559999999999999709998888774567999999997
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 80 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~~ 80 (189)
||+|||+||.+|+|+++.+++|+|++++ +.+.+..+...+..+.+|+.+|+.+++++|++....+|+|+|++|++||++
T Consensus 43 yL~QDy~yl~~f~r~~a~~~~ka~~~~~-~~~~~~~l~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~p~~~aY~~~l~~ 121 (221)
T 2f2g_A 43 WLGQDYLFVRRFVPFVASVLIRACKDSG-ESSDMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLED 121 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCS-CTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 9998899999999999999870999365-389999999999998889999999999849991006998799999999998
Q ss_pred H-CC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 3-59--95369999999999999999987214599999981699998741796799999999999999973226244303
Q 029678 81 L-MS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG 157 (189)
Q Consensus 81 ~-~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~~~ 157 (189)
+ +. ++.++++||+||.|+|.++|+.+.... ... + ++|++||++|+|++|.+.|+++++++|+++...++
T Consensus 122 ~~~~~~~~~~~~aAl~pc~~~Y~~i~~~l~~~~-~~~-~-~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~----- 193 (221)
T 2f2g_A 122 LMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDG-NKT-P-VELTGACHRWGNDGFKQYCSSVKNIAERCLENASG----- 193 (221)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHH-HTS-S-SCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCH-----
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC-C-CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH-----
T ss_conf 253479999999999999999999999987445-789-8-68999998748889999999999999998865999-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3406899999999999999999875753358
Q 029678 158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 158 ~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
++++++.++|+++++||++||||||++
T Consensus 194 ----~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2f2g_A 194 ----EVLGEAEDVLVRVLELEVAFWEMSRGG 220 (221)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----999999999999999999999987557
No 8
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=1.00 E-value=1 Score=251.26 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888---877456799999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+|||+||.+|+|+++.+++|+|++ +.+..+.+.+.++.+ |+.+|+.+++++|++.++ .+|+|+|.+|++
T Consensus 48 YL~QDy~yl~~f~r~~a~~~~ka~~~-----~~~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 122 (221)
T 2gm8_A 48 YLLQDYNYLVNFAKALSLAASRAPSV-----DLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMA 122 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSH-----HHHHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99988999999999999999849998-----9999999999999999999999999984999899853789869999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~ 154 (189)
||++++. ++.++++||+||.|+|.++|+.+..... . .++++|++||++|+|++|.+.|+++++++|++ +
T Consensus 123 ~l~~~a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~~~-~-~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~-----~-- 193 (221)
T 2gm8_A 123 YLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLR-E-NPVHVYKKWASVYLSPEYRGLVERLRAVLDSS-----G-- 193 (221)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHGGGGG-G-CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHTS-----S--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----H--
T ss_conf 9999984599999999998599999999999975267-7-88865999999838888999999999999876-----6--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3033406899999999999999999875753358
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
++++++.++|++++++|++||||||++
T Consensus 194 -------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2gm8_A 194 -------LSAEELWPYFKEASLYELEFWQAAYEG 220 (221)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -------889999999999999999999998746
No 9
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=1.00 E-value=1 Score=250.09 Aligned_cols=166 Identities=13% Similarity=0.131 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf 9212499999999999999721047788973269999988855999-999999999970999888---877456799999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~ 76 (189)
||+|||+||.+|+|+++++++|++++ +.+..+...+.++.+ |+.+|+.+++++||+.++ .+|+|+|++|++
T Consensus 53 YL~QDy~yl~~f~r~~a~~~~ka~~~-----~~~~~~~~~~~~~~~~E~~~~~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 127 (225)
T 1z72_A 53 YLIQDYHFFDAFLSMLGACVAHADKL-----ESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQD 127 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999999999859999-----9999999999999999999999999990989999965689879999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678 77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~ 154 (189)
||++++. ++.++++||+||.|+|.++|+. . .. .+++++|++||++|+|++|.+.|+++++++|+++.. ++
T Consensus 128 ~l~~~a~~~~~~~~~aAl~pc~~~Y~~i~~~-~---~~-~~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~~~~-~~-- 199 (225)
T 1z72_A 128 LMYSAVASSDYAHLLVMLVIAEGLYLDWGSK-D---LA-LPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKN-RE-- 199 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHTC-S---SC-CCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC--CC--
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-H---CC-CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CH--
T ss_conf 9999872599999999997899999999975-3---33-898663899999858999999999999999987728-98--
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 303340689999999999999999987575335
Q 029678 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~ 187 (189)
+++ ++.++|+++++||++||||||+
T Consensus 200 -------~~~-~~~~~f~~a~~lE~~Fwd~a~~ 224 (225)
T 1z72_A 200 -------DLT-ELQQRWNQAVALELAFFDIGYD 224 (225)
T ss_dssp -------CHH-HHHHHHHHHHHHHHHHTTTTC-
T ss_pred -------HHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_conf -------899-9999999999999999997642
No 10
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=1.00 E-value=1 Score=248.78 Aligned_cols=165 Identities=24% Similarity=0.269 Sum_probs=151.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 921249999999999999972104778897326---99999888559999999999999709998888774567999999
Q 029678 1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGD---TEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRF 77 (189)
Q Consensus 1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~---~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~ 77 (189)
||+|||+||.+|+|+++.+++|+|++ +. +..+.+.+.++ |+.+|+ ++++||+. ..+|+|+|++|++|
T Consensus 39 YL~QDy~yl~~f~r~~a~~~~ka~~~-----~~~~~~~~l~~~~~~i--E~~lh~--~~~~Gi~~-~~~~~p~t~aY~~~ 108 (220)
T 1rtw_A 39 WLVNDYYFVKNALRFMALLMAKAPDD-----LLPFFAESIYYISKEL--EMFEKK--AQELGISL-NGEIDWRAKSYVNY 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHH--HHHHHH--HHHTTCCS-SSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHH--HHHHHH--HHHCCCCC-CCCCCHHHHHHHHH
T ss_conf 99989999999999999999868995-----3389999999999999--999988--98779998-89998799999999
Q ss_pred HHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 997359--953699999999999999999872145999999816999987417967999999999999999732262443
Q 029678 78 LESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 78 l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~ 155 (189)
|++++. ++.++++|++||.|+|.++|+.+.... .++++|++||++|+|++|.+.|+++++++|+++...++
T Consensus 109 l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~----~~~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~--- 181 (220)
T 1rtw_A 109 LLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL----KERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGE--- 181 (220)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC----SSCCTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSCH---
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH---
T ss_conf 99987469999999999999999999999987546----89966999999858889999999999999998865899---
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 033406899999999999999999875753358
Q 029678 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~ 188 (189)
++++++.++|++++++|++||||||+.
T Consensus 182 ------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 208 (220)
T 1rtw_A 182 ------FEKERAREVFKEVSKFELIFWDIAYGG 208 (220)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------999999999999999999999987606
Done!