BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029679
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1
Length = 235
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 12/75 (16%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L +LD
Sbjct: 31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78
Query: 169 AMEDPKEAHARRGGE 183
++P++A A RG E
Sbjct: 79 RFDNPEKARALRGAE 93
>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC
56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1
Length = 347
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
IP E + + +V + Q P + N + +VG+ G P +
Sbjct: 81 IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130
Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
R+ + P + S+ D ++ A ++PMDGFHL LD +DP EAH RRG
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRG 177
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
E + LA ++L + N + V + GPPG+GKST++ ++ IN
Sbjct: 4 ETAEGLADQVLKFLSDKLETNYRVAVIVVGPPGSGKSTISEKLCHEIN 51
>sp|Q6CNA8|YFH7_KLULA ATP-dependent kinase YFH7 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YFH7 PE=3 SV=1
Length = 353
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
PD+A ++PMDGFHL LD +DP AH RRG
Sbjct: 143 PDIAQIVPMDGFHLSRKHLDHFKDPTVAHLRRG 175
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 87 YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
YDAL + L N N + +G+ GPPG+GKST+A ++ +IN
Sbjct: 4 YDALVDQALQLLEQNINKNYRVCIGIIGPPGSGKSTVAEKLKEKIN 49
>sp|Q6FUM2|YFH7_CANGA ATP-dependent kinase YFH7 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YFH7 PE=3
SV=1
Length = 345
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
+A VLPMDGFHL LD DP+ AH RRG
Sbjct: 148 IAEVLPMDGFHLSRECLDHFSDPQWAHLRRG 178
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
N + +V + GPPG+GKST+A ++ IN +S+ +K D T+ + H+ +
Sbjct: 22 NYRLLVFIVGPPGSGKSTIAEKLKDAIN-------TSYLDYLKEIDRKTLRCENYNHINI 74
Query: 165 SQL 167
Q
Sbjct: 75 DQF 77
>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC
2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)
GN=YFH7 PE=3 SV=1
Length = 375
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 18/74 (24%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
I+G G P A + N + P + SSF A ++PMDGFHL L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197
Query: 168 DAMEDPKEAHARRG 181
+ ++P+EAH RRG
Sbjct: 198 SSFQNPQEAHKRRG 211
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 88 DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
DALA + + N + + + GPPG+GKST+A ++ R+IN
Sbjct: 40 DALANEAIGLLDQCKDDNYRVCILIVGPPGSGKSTVAQDLSRQIN 84
>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YFH7 PE=1 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain
YJM789) GN=YFH7 PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain
AWRI1631) GN=YFH7 PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain
JAY291) GN=YFH7 PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=YFH7 PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain
Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1
Length = 353
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185
>sp|A7TQF3|YFH7_VANPO ATP-dependent kinase YFH7 OS=Vanderwaltozyma polyspora (strain ATCC
22028 / DSM 70294) GN=YFH7 PE=3 SV=1
Length = 359
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A ++PMDGFHL LD +DP AH RRG
Sbjct: 156 NIAQIIPMDGFHLTRKCLDNFKDPVNAHRRRG 187
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 100 LASNVNVKHIVGLA--GPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157
LA V+ + + L GPPG+GKST+A E+ R+N ++ + ++ V+ LP+
Sbjct: 15 LADRVDKNYRISLVIVGPPGSGKSTIANELCERLNSMFHEYLKEHGGNIEISGVSEPLPV 74
Query: 158 D 158
D
Sbjct: 75 D 75
>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12)
GN=yggC PE=4 SV=2
Length = 237
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
++A+ +E + + + LL A VN + +V L PPG GKSTL W
Sbjct: 12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63
Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME 171
A D ++ P + T LPMDGFH Y S LDA +
Sbjct: 64 EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDAHQ 95
>sp|B4YNE3|V3_SPTNK Uncharacterized protein V3 OS=Sputnik virophage GN=ORF3 PE=4 SV=1
Length = 245
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-----PMDGFH 161
+ ++ +AG G+GKST AA+ + K++P+ S++K ++ L P+D
Sbjct: 56 REVIYIAGQSGSGKSTYAAQYIYHYKKLFPKNKVFVFSRLKMAEILVSLGCIEIPIDD-- 113
Query: 162 LYLSQLDAMEDPKEA 176
L +DA+ D K+A
Sbjct: 114 -ELQDMDAIRDIKDA 127
>sp|Q750K6|YFH7_ASHGO ATP-dependent kinase YFH7 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YFH7 PE=3 SV=1
Length = 334
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
++A V+PMDGFHL + LD D AH RRG
Sbjct: 139 NIAEVVPMDGFHLSRAHLDHFADAAAAHKRRG 170
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 87 YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
Y+ L +R+ A N + V + G PG+GKST+A + R +N+
Sbjct: 3 YEDLKKRVWDLLAQNIESNYRVAVVVVGHPGSGKSTMAQRLKRDLNQ 49
>sp|O58012|Y274_PYRHO Putative GTPase PH0274 OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0274
PE=3 SV=1
Length = 317
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVR 129
HIVG+ GPPGAGKSTL ++++
Sbjct: 48 HIVGITGPPGAGKSTLLDKLIK 69
>sp|Q24TX4|KGUA_DESHY Guanylate kinase OS=Desulfitobacterium hafniense (strain Y51)
GN=gmk PE=3 SV=1
Length = 200
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
++ L+GP GAGK TL E++R++ PQ S + + P MDG H Y
Sbjct: 8 LIVLSGPSGAGKGTLCQELLRQL----PQVKYSVSATTRQPRPGE---MDGLHYYF 56
>sp|Q75JI3|NSF_DICDI Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1
Length = 738
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIW 135
++A D A + R+ P A+ + V H+ G L GPPG GK+ +A ++ + +N
Sbjct: 227 LDAEFRDIFRRAFSSRIFP-PAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGRE 285
Query: 136 PQKAS 140
P+ S
Sbjct: 286 PKVVS 290
>sp|Q0AX16|RUVB_SYNWW Holliday junction ATP-dependent DNA helicase RuvB OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=ruvB PE=3
SV=1
Length = 344
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155
T+A ++ H++ L+GPPG GK+TLA+ + + K P + +S + +P D+A +L
Sbjct: 45 TAARERKESLDHVL-LSGPPGLGKTTLASIIANEVGK--PIRKTSGPAIERPGDLAAIL 100
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 19/94 (20%)
Query: 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDE---------------VYDALAQRLLPTS-A 99
++L+Q+ ++K++ + +EI E + +DE VYD L + L T+
Sbjct: 36 KALIQSDVNVKLVFNMSKEI---ERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQK 92
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
L + + K ++ L G G+GK+T AA++ R I K
Sbjct: 93 LELDPSKKSVILLIGIQGSGKTTSAAKLARYIQK 126
>sp|Q5A6N1|LONM_CANAL Lon protease homolog, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=PIM1 PE=3 SV=1
Length = 1078
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 59 VQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
V K S V + REI + + +V D + + + ++ NV+ K I+ LAGPPG
Sbjct: 497 VYTKDSFNV--KKAREILDRDHYGLKDVKDRILE-FISVGKISGNVDGK-ILCLAGPPGT 552
Query: 119 GKSTLAAEVVRRINKIWPQKA 139
GK+++A + +N+ + + A
Sbjct: 553 GKTSIAKSIAEALNRKYTRIA 573
>sp|Q47R17|KGUA_THEFY Guanylate kinase OS=Thermobifida fusca (strain YX) GN=gmk PE=3 SV=1
Length = 196
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
+P + A N K + L+GP G GKST+ E+ RR ++W
Sbjct: 1 MPVESGAGNDQPKRLTVLSGPSGVGKSTVVKELRRRRPEVW 41
>sp|Q9V225|Y249_PYRAB Putative GTPase PYRAB02490 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB02490 PE=3 SV=1
Length = 324
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINK 133
+IVG+ GPPGAGKSTL ++++ K
Sbjct: 46 YIVGITGPPGAGKSTLLDKLIKEARK 71
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2
Length = 1121
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
IV + GPPG GKSTL +VRR +K
Sbjct: 76 IVAVMGPPGTGKSTLIKSLVRRYSK 100
>sp|P34732|SEC18_CANAX Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3
SV=2
Length = 794
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLA--GPPGAGKSTLAAEVVRRINKIW 135
++A D A R+LP LA ++ KH GL GPPG GK+ +A ++ + +N
Sbjct: 280 LDAEFQDIFRRAFNSRILPPE-LAEKLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKE 338
Query: 136 PQ 137
P+
Sbjct: 339 PK 340
>sp|B1YAJ8|KCY_PYRNV Cytidylate kinase OS=Pyrobaculum neutrophilum (strain DSM 2338 /
JCM 9278 / V24Sta) GN=cmk PE=3 SV=1
Length = 184
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD--GFHLYLS- 165
+V ++G PG+GK+T+A EV R + + F ++A + MD FH Y
Sbjct: 3 VVAVSGQPGSGKTTIAREVARVLKVPLVSSGTIF------RELAAKMGMDLVEFHRYAET 56
Query: 166 --QLDAMEDPKEAHARRGGEVPTLG 188
++D M D A + G+V G
Sbjct: 57 NPEIDKMIDALTAEKAKAGDVVVEG 81
>sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
Length = 742
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + S + +KH+ G L GPPG GK+ +A ++ + +N P+
Sbjct: 231 AFASRVFPPH-VTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPK 280
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1
Length = 402
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFH 161
++GLA G GKST +RR+ ++ P K + DS D TV+ +D FH
Sbjct: 58 VIGLAADSGCGKSTF----MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
>sp|Q7NJM6|PANCY_GLOVI Bifunctional pantoate ligase/cytidylate kinase OS=Gloeobacter
violaceus (strain PCC 7421) GN=panC/cmk PE=3 SV=1
Length = 515
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152
RL+ L + + I+ + GP GAGKSTLA + +R+ ++ + + +
Sbjct: 274 RLIDNVVLGQHHERRPIIAIDGPAGAGKSTLARRLAQRLGFLYIDTGAMYRAVTWRAMQE 333
Query: 153 TVLPMDGFHL 162
+ P+DG L
Sbjct: 334 RIDPLDGERL 343
>sp|P70828|RUVB_BORBU Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=ruvB PE=3 SV=1
Length = 347
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRIN-KIWPQKASSFDSQVKPPDVATVL 155
V L+GPPG GK+TLA+ + +N I A +FD KP D+ +L
Sbjct: 60 VFLSGPPGLGKTTLASIIAFEMNASIKITSAPAFD---KPKDIIGIL 103
>sp|Q9P7Q4|SEC18_SCHPO Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec18 PE=1 SV=1
Length = 792
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A RL P + + + H+ G L GPPG GK+ +A ++ + +N P+
Sbjct: 285 AFASRLFP-PGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPK 334
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 34.3 bits (77), Expect = 0.56, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
IV + GPPG GK+TL +VRR+ K
Sbjct: 71 IVAVVGPPGTGKTTLIRSLVRRMTK 95
>sp|Q58928|Y1533_METJA Uncharacterized KH and PIN-domain containing protein MJ1533
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1533
PE=1 SV=1
Length = 642
Score = 34.3 bits (77), Expect = 0.57, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 76 PVVEARCMD-EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA---AEVVRRI 131
PVV+A D E+ D L +RL A + V +GPPG+GKST AE R
Sbjct: 261 PVVKASLEDYELSDKLMERL---KERAEGIFV------SGPPGSGKSTFVAALAEFYRSQ 311
Query: 132 NKIWPQKASSFDSQVKPPDVATVLPMDG 159
KI S D QV ++ P++G
Sbjct: 312 GKIVKTMESPRDLQVS-KEITQYAPLEG 338
>sp|Q662Z0|RUVB_BORGA Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
garinii (strain PBi) GN=ruvB PE=3 SV=1
Length = 347
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRIN-KIWPQKASSFDSQVKPPDVATVL 155
V L+GPPG GK+TLA+ + +N I A +FD KP D+ +L
Sbjct: 60 VFLSGPPGLGKTTLASIIAFEMNASIKITSAPAFD---KPKDIIGIL 103
>sp|Q0SPE2|RUVB_BORAP Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
afzelii (strain PKo) GN=ruvB PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRIN-KIWPQKASSFDSQVKPPDVATVL 155
V L+GPPG GK+TLA+ + +N I A +FD KP D+ +L
Sbjct: 60 VFLSGPPGLGKTTLASIIAFEMNASIKITSAPAFD---KPKDIIGIL 103
>sp|A0LUK5|RUVB_ACIC1 Holliday junction ATP-dependent DNA helicase RuvB OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ruvB PE=3
SV=1
Length = 367
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM--DGFHLYLS 165
HI+ L+GPPG GK+TLA V +N P + +S + D+A VL +G L+L
Sbjct: 69 HIL-LSGPPGLGKTTLAMIVAAELNT--PIRVTSGPAIQHAGDLAAVLTQLSEGEVLFLD 125
Query: 166 QLDAMEDPKE 175
++ M P E
Sbjct: 126 EIHRMARPAE 135
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 19/94 (20%)
Query: 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDE---------------VYDALAQRLLPT-SA 99
++L+Q+ ++K++ + +EI E + ++E VYD L + L T
Sbjct: 36 KALIQSDVNVKLVFNMSKEI---ERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETIQK 92
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
L + + K ++ L G G+GK+T AA++ R I K
Sbjct: 93 LELDASKKSVILLIGIQGSGKTTSAAKLARYIQK 126
>sp|Q2RQQ0|LOLD2_RHORT Lipoprotein-releasing system ATP-binding protein LolD 2
OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
GN=lolD2 PE=3 SV=1
Length = 231
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
+P+VEAR + + + LA ++L L+ ++N V L GP G+GKSTL A
Sbjct: 3 LPLVEARSLSKSFGEGELASQVLKR--LSFDINAGERVALVGPSGSGKSTLLA 53
>sp|P54351|NSF2_DROME Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2
SV=2
Length = 752
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P L + +KH+ G L GPPG GK+ +A ++ +N P+
Sbjct: 239 AFASRVFPPE-LVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPK 288
>sp|Q6CNR9|LONM_KLULA Lon protease homolog, mitochondrial OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PIM1 PE=3 SV=1
Length = 1111
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 48 AQPVFGKTRSLVQNKTSL--KVLCSQQREIPVVEARCMDEVYDALAQ------RLLPTSA 99
+Q FG R+ + TSL ++ +Q IP + + +DE + + +
Sbjct: 530 SQSEFGVIRNYLDWITSLPWGIISKEQYSIPKAK-KILDEDHYGMKDVKDRILEFIAVGK 588
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
L V+ K I+ GPPG GK+++ + R +N+
Sbjct: 589 LLGKVDGK-IICFVGPPGVGKTSIGKSIARSLNR 621
>sp|Q5R410|NSF_PONAB Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1
Length = 744
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + + KH+ G L GPPG GK+ LA ++ + +N P+
Sbjct: 234 AFASRVFPPE-IVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPK 283
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 36 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 91
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 92 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 126
>sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3
Length = 744
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + + KH+ G L GPPG GK+ LA ++ + +N P+
Sbjct: 234 AFASRVFPPE-IVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPK 283
>sp|P46460|NSF_MOUSE Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2
Length = 744
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + + KH+ G L GPPG GK+ LA ++ + +N P+
Sbjct: 234 AFASRVFPPE-IVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPK 283
>sp|B9WLN5|LONM_CANDC Lon protease homolog, mitochondrial OS=Candida dubliniensis (strain
CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL
Y-17841) GN=PIM1 PE=3 SV=1
Length = 1073
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 59 VQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
V K S V + REI + + +V D + + + ++ NV+ + I+ LAGPPG
Sbjct: 492 VYTKDSFNV--KKAREILDRDHYGLKDVKDRILE-FISVGKISGNVDGR-ILCLAGPPGT 547
Query: 119 GKSTLAAEVVRRINKIWPQKA 139
GK+++A + +N+ + + A
Sbjct: 548 GKTSIAKSIAEALNRKYTRIA 568
>sp|Q9QUL6|NSF_RAT Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1
Length = 744
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + + KH+ G L GPPG GK+ LA ++ + +N P+
Sbjct: 234 AFASRVFPPE-IVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPK 283
>sp|P18708|NSF_CRIGR Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1
Length = 744
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 89 ALAQRLLPTSALASNVNVKHIVG--LAGPPGAGKSTLAAEVVRRINKIWPQ 137
A A R+ P + + KH+ G L GPPG GK+ LA ++ + +N P+
Sbjct: 234 AFASRVFPPE-IVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPK 283
>sp|Q07PZ0|PHNC1_RHOP5 Phosphonates import ATP-binding protein PhnC 1 OS=Rhodopseudomonas
palustris (strain BisA53) GN=phnC1 PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
L ++ ++ IVGL GP GAGKSTL +R +N++ P S
Sbjct: 16 LALKGVSLHIGAGDIVGLIGPSGAGKSTL----IRCVNRLVPPTGGSI 59
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS---------QVKPPDVAT 153
N+ H++ +GPPG GK+ A + R I +W + + ++ + K + A
Sbjct: 41 NLPHLL-FSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDVVRTKIKNFAK 99
Query: 154 VLPMDGFH---LYLSQLDAMEDPKEAHARRGGE 183
PM G ++L + DA+ ++ RR E
Sbjct: 100 TAPMGGAEFKIIFLDEADALTSDAQSALRRTME 132
>sp|Q2FPZ8|RUVB_METHJ Holliday junction ATP-dependent DNA helicase RuvB
OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
GN=ruvB PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 84 DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN-KIWPQKASSF 142
D + DAL + TSA N + HI+ +GPPG GK+TLA + + +N I
Sbjct: 32 DSIKDALTVAI--TSARKRNKPLDHIL-FSGPPGLGKTTLAHIIAQEMNSHIETTSGPVL 88
Query: 143 DSQVKPPDVATVL 155
D +P D+A +L
Sbjct: 89 D---RPGDLAALL 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,386,151
Number of Sequences: 539616
Number of extensions: 2731972
Number of successful extensions: 21934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 21752
Number of HSP's gapped (non-prelim): 359
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)