Query 029679
Match_columns 189
No_of_seqs 352 out of 2241
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 16:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1123 ATPase components of v 99.9 4.7E-26 1E-30 210.2 11.3 153 18-181 222-398 (539)
2 COG4172 ABC-type uncharacteriz 99.9 3.5E-24 7.6E-29 191.7 12.5 149 21-181 228-394 (534)
3 COG3842 PotA ABC-type spermidi 99.9 3.4E-23 7.4E-28 183.5 9.6 98 75-181 3-106 (352)
4 COG3839 MalK ABC-type sugar tr 99.9 4.3E-23 9.2E-28 182.1 9.9 100 75-183 1-106 (338)
5 COG1116 TauB ABC-type nitrate/ 99.9 3.2E-22 7E-27 169.3 9.4 97 76-181 2-101 (248)
6 COG1126 GlnQ ABC-type polar am 99.9 3.2E-22 6.9E-27 166.8 7.6 94 76-178 1-103 (240)
7 COG1136 SalX ABC-type antimicr 99.9 2.1E-21 4.6E-26 163.0 9.9 102 77-183 1-114 (226)
8 COG1135 AbcC ABC-type metal io 99.8 4.8E-21 1E-25 166.5 8.1 102 77-183 1-114 (339)
9 COG2884 FtsE Predicted ATPase 99.8 6E-21 1.3E-25 156.6 6.7 100 77-184 1-111 (223)
10 COG1124 DppF ABC-type dipeptid 99.8 3.4E-20 7.3E-25 156.6 9.6 104 75-181 1-113 (252)
11 COG1125 OpuBA ABC-type proline 99.8 3.9E-20 8.5E-25 157.7 6.2 98 77-183 1-106 (309)
12 COG3638 ABC-type phosphate/pho 99.8 9.4E-20 2E-24 153.6 8.2 94 76-177 2-106 (258)
13 COG1118 CysA ABC-type sulfate/ 99.8 6.7E-20 1.5E-24 159.4 6.3 95 77-180 2-105 (345)
14 COG1127 Ttg2A ABC-type transpo 99.8 2.2E-19 4.8E-24 151.7 8.8 97 75-180 6-113 (263)
15 PRK11432 fbpC ferric transport 99.8 6.1E-19 1.3E-23 156.5 10.7 98 75-181 4-107 (351)
16 PRK10261 glutathione transport 99.8 1.4E-18 3E-23 164.0 13.6 150 18-179 236-430 (623)
17 TIGR03265 PhnT2 putative 2-ami 99.8 7E-19 1.5E-23 156.2 10.4 98 75-181 2-105 (353)
18 PRK11650 ugpC glycerol-3-phosp 99.8 7.3E-19 1.6E-23 156.2 10.2 97 76-181 2-105 (356)
19 TIGR02314 ABC_MetN D-methionin 99.8 1E-18 2.2E-23 154.7 10.8 100 77-181 1-111 (343)
20 COG1131 CcmA ABC-type multidru 99.8 1.1E-18 2.4E-23 151.3 10.5 100 76-183 3-109 (293)
21 COG0410 LivF ABC-type branched 99.8 6.3E-19 1.4E-23 147.9 8.3 96 76-180 2-106 (237)
22 PRK09452 potA putrescine/sperm 99.8 1.1E-18 2.4E-23 156.1 10.5 99 74-181 11-115 (375)
23 COG4525 TauB ABC-type taurine 99.8 1E-18 2.2E-23 144.6 8.2 103 75-184 1-106 (259)
24 PRK11607 potG putrescine trans 99.8 2.5E-18 5.4E-23 154.0 10.7 99 74-181 16-120 (377)
25 PRK13537 nodulation ABC transp 99.8 4.7E-18 1E-22 147.9 11.3 98 75-181 5-109 (306)
26 COG0411 LivG ABC-type branched 99.8 4.6E-19 1E-23 149.7 4.8 96 75-178 2-105 (250)
27 COG1117 PstB ABC-type phosphat 99.7 3.5E-18 7.7E-23 142.6 8.1 103 75-184 5-119 (253)
28 PRK11000 maltose/maltodextrin 99.7 8.3E-18 1.8E-22 150.0 10.9 96 76-180 2-103 (369)
29 COG1120 FepC ABC-type cobalami 99.7 3.9E-18 8.4E-23 145.8 8.3 93 77-178 2-102 (258)
30 TIGR03258 PhnT 2-aminoethylpho 99.7 6.5E-18 1.4E-22 150.6 9.9 96 77-181 5-108 (362)
31 TIGR00960 3a0501s02 Type II (G 99.7 7.1E-18 1.5E-22 138.5 9.4 96 77-179 1-107 (216)
32 PRK11629 lolD lipoprotein tran 99.7 1.5E-17 3.2E-22 138.4 11.4 98 76-178 4-113 (233)
33 PRK13536 nodulation factor exp 99.7 9.9E-18 2.1E-22 148.2 10.8 99 74-181 38-143 (340)
34 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 1E-17 2.2E-22 142.9 10.2 95 75-177 2-102 (254)
35 PRK10584 putative ABC transpor 99.7 1.8E-17 3.9E-22 137.2 11.3 98 75-177 4-113 (228)
36 COG4555 NatA ABC-type Na+ tran 99.7 2.5E-18 5.4E-23 142.5 5.8 99 77-183 1-106 (245)
37 PRK11153 metN DL-methionine tr 99.7 1.3E-17 2.8E-22 147.3 10.6 100 77-181 1-111 (343)
38 PRK15079 oligopeptide ABC tran 99.7 1.3E-17 2.8E-22 146.9 10.5 102 74-179 5-127 (331)
39 cd03257 ABC_NikE_OppD_transpor 99.7 1.3E-17 2.8E-22 137.5 9.9 99 77-178 1-110 (228)
40 cd03266 ABC_NatA_sodium_export 99.7 1.7E-17 3.8E-22 136.2 10.4 98 77-179 1-105 (218)
41 PRK10851 sulfate/thiosulfate t 99.7 9.1E-18 2E-22 149.1 9.2 94 77-179 2-101 (353)
42 COG1129 MglA ABC-type sugar tr 99.7 5.2E-18 1.1E-22 156.0 7.9 97 74-179 5-110 (500)
43 PRK11022 dppD dipeptide transp 99.7 1.8E-17 3.9E-22 145.5 10.5 104 75-178 1-117 (326)
44 TIGR01288 nodI ATP-binding ABC 99.7 2.4E-17 5.2E-22 142.9 11.0 94 76-178 3-103 (303)
45 COG4181 Predicted ABC-type tra 99.7 5.1E-18 1.1E-22 138.0 6.2 100 77-181 6-117 (228)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 1.7E-17 3.6E-22 136.3 9.4 98 78-180 1-110 (218)
47 cd03265 ABC_DrrA DrrA is the A 99.7 2.4E-17 5.2E-22 135.9 10.1 95 78-181 1-102 (220)
48 PRK09473 oppD oligopeptide tra 99.7 2.6E-17 5.7E-22 144.8 10.8 102 74-178 9-125 (330)
49 cd03269 ABC_putative_ATPase Th 99.7 2.8E-17 6.1E-22 134.4 10.2 93 78-179 1-97 (210)
50 cd03261 ABC_Org_Solvent_Resist 99.7 1.5E-17 3.2E-22 138.4 8.6 92 78-178 1-103 (235)
51 PRK11308 dppF dipeptide transp 99.7 2.3E-17 5.1E-22 145.0 10.3 101 75-178 3-120 (327)
52 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.1E-17 6.6E-22 135.3 10.3 97 78-179 1-100 (220)
53 cd03258 ABC_MetN_methionine_tr 99.7 2.4E-17 5.3E-22 136.8 9.8 98 77-179 1-109 (233)
54 cd03263 ABC_subfamily_A The AB 99.7 2.6E-17 5.7E-22 135.3 9.8 96 78-180 1-103 (220)
55 COG3845 ABC-type uncharacteriz 99.7 8.2E-18 1.8E-22 153.3 7.1 95 75-178 2-105 (501)
56 TIGR02211 LolD_lipo_ex lipopro 99.7 3.7E-17 8.1E-22 134.5 10.3 97 77-178 1-109 (221)
57 cd03268 ABC_BcrA_bacitracin_re 99.7 3.6E-17 7.9E-22 133.6 10.1 93 78-179 1-99 (208)
58 PRK11248 tauB taurine transpor 99.7 4.2E-17 9.2E-22 138.2 10.7 94 77-179 1-97 (255)
59 COG4152 ABC-type uncharacteriz 99.7 9.4E-18 2E-22 142.5 6.6 99 77-184 2-104 (300)
60 cd03296 ABC_CysA_sulfate_impor 99.7 3.8E-17 8.3E-22 136.4 10.1 93 77-178 2-100 (239)
61 PRK15093 antimicrobial peptide 99.7 3.6E-17 7.9E-22 143.7 10.3 102 75-176 1-115 (330)
62 TIGR02673 FtsE cell division A 99.7 3.5E-17 7.5E-22 134.1 9.5 94 77-178 1-105 (214)
63 cd03224 ABC_TM1139_LivF_branch 99.7 2.6E-17 5.7E-22 135.3 8.8 92 78-178 1-101 (222)
64 PRK11831 putative ABC transpor 99.7 3.9E-17 8.4E-22 139.2 10.1 95 75-178 5-110 (269)
65 cd03259 ABC_Carb_Solutes_like 99.7 3.7E-17 8E-22 134.0 9.4 92 78-178 1-98 (213)
66 TIGR03522 GldA_ABC_ATP gliding 99.7 4.6E-17 1E-21 141.1 10.4 96 77-181 2-104 (301)
67 PRK11264 putative amino-acid A 99.7 3.8E-17 8.1E-22 137.0 9.5 93 76-177 2-110 (250)
68 PRK13538 cytochrome c biogenes 99.7 5E-17 1.1E-21 132.9 9.8 94 77-179 1-101 (204)
69 cd03218 ABC_YhbG The ABC trans 99.7 4.1E-17 8.9E-22 135.2 9.2 92 78-178 1-101 (232)
70 PRK10908 cell division protein 99.7 5.2E-17 1.1E-21 134.1 9.8 95 77-179 1-106 (222)
71 PRK13650 cbiO cobalt transport 99.7 4.3E-17 9.3E-22 139.8 9.6 100 76-180 3-110 (279)
72 PRK13635 cbiO cobalt transport 99.7 4.1E-17 8.9E-22 140.0 9.5 98 76-179 4-109 (279)
73 PRK13543 cytochrome c biogenes 99.7 8.6E-17 1.9E-21 132.5 10.9 95 75-178 9-108 (214)
74 PRK11614 livF leucine/isoleuci 99.7 4.5E-17 9.7E-22 135.7 9.2 94 75-177 3-105 (237)
75 PRK13539 cytochrome c biogenes 99.7 5.8E-17 1.2E-21 132.9 9.6 93 77-178 2-99 (207)
76 cd03301 ABC_MalK_N The N-termi 99.7 6.4E-17 1.4E-21 132.4 9.8 92 78-178 1-98 (213)
77 PRK10895 lipopolysaccharide AB 99.7 4.1E-17 8.8E-22 136.2 8.8 93 76-177 2-103 (241)
78 PRK15134 microcin C ABC transp 99.7 6.1E-17 1.3E-21 149.7 10.7 148 18-178 224-390 (529)
79 cd03262 ABC_HisP_GlnQ_permease 99.7 4.5E-17 9.9E-22 133.1 8.7 91 78-177 1-101 (213)
80 PRK11247 ssuB aliphatic sulfon 99.7 5.7E-17 1.2E-21 137.9 9.7 93 75-176 10-105 (257)
81 PRK13540 cytochrome c biogenes 99.7 6.2E-17 1.3E-21 131.9 9.5 92 77-177 1-99 (200)
82 cd03219 ABC_Mj1267_LivG_branch 99.7 4.6E-17 1E-21 135.2 8.8 93 78-179 1-102 (236)
83 PRK14267 phosphate ABC transpo 99.7 9.7E-17 2.1E-21 134.9 10.9 98 75-178 2-111 (253)
84 cd03260 ABC_PstB_phosphate_tra 99.7 5E-17 1.1E-21 134.4 9.0 92 78-179 1-107 (227)
85 PRK13637 cbiO cobalt transport 99.7 7.4E-17 1.6E-21 138.9 10.3 99 77-180 2-112 (287)
86 TIGR02315 ABC_phnC phosphonate 99.7 3.4E-17 7.3E-22 136.6 7.9 91 77-176 1-103 (243)
87 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 7.9E-17 1.7E-21 134.3 10.1 93 77-178 1-100 (236)
88 PRK13647 cbiO cobalt transport 99.7 7.1E-17 1.5E-21 138.1 10.0 96 76-178 3-106 (274)
89 PRK10247 putative ABC transpor 99.7 8.1E-17 1.7E-21 133.6 10.0 95 74-178 4-106 (225)
90 PRK13632 cbiO cobalt transport 99.7 7.1E-17 1.5E-21 137.7 9.8 98 75-178 5-110 (271)
91 TIGR03410 urea_trans_UrtE urea 99.7 6E-17 1.3E-21 134.2 9.1 93 78-179 1-102 (230)
92 cd03292 ABC_FtsE_transporter F 99.7 8.9E-17 1.9E-21 131.5 9.9 94 78-179 1-105 (214)
93 TIGR03411 urea_trans_UrtD urea 99.7 8.7E-17 1.9E-21 134.2 10.0 93 76-177 1-102 (242)
94 PRK13643 cbiO cobalt transport 99.7 7.7E-17 1.7E-21 138.9 9.9 99 77-180 1-113 (288)
95 TIGR02769 nickel_nikE nickel i 99.7 7.3E-17 1.6E-21 137.0 9.5 99 77-178 2-116 (265)
96 cd03226 ABC_cobalt_CbiO_domain 99.7 4.1E-17 8.9E-22 133.2 7.7 93 79-178 1-98 (205)
97 PRK14247 phosphate ABC transpo 99.7 1.1E-16 2.4E-21 134.3 10.4 98 75-178 1-108 (250)
98 cd03233 ABC_PDR_domain1 The pl 99.7 9.4E-17 2E-21 131.5 9.8 100 77-178 3-109 (202)
99 PRK13652 cbiO cobalt transport 99.7 1.4E-16 2.9E-21 136.5 10.9 97 75-178 1-105 (277)
100 PRK09493 glnQ glutamine ABC tr 99.7 9.8E-17 2.1E-21 133.9 9.7 92 77-177 1-102 (240)
101 TIGR00972 3a0107s01c2 phosphat 99.7 1.1E-16 2.4E-21 134.2 10.0 93 77-179 1-108 (247)
102 PRK13636 cbiO cobalt transport 99.7 1.2E-16 2.6E-21 137.3 10.3 97 76-179 4-110 (283)
103 PRK10070 glycine betaine trans 99.7 1E-16 2.2E-21 144.7 10.2 101 76-181 3-135 (400)
104 PRK13651 cobalt transporter AT 99.7 1.2E-16 2.7E-21 139.1 10.4 101 77-181 2-135 (305)
105 TIGR02324 CP_lyasePhnL phospho 99.7 1.6E-16 3.5E-21 131.2 10.6 97 77-178 1-116 (224)
106 cd03256 ABC_PhnC_transporter A 99.7 8.7E-17 1.9E-21 133.7 9.0 92 78-177 1-103 (241)
107 TIGR01189 ccmA heme ABC export 99.7 1.1E-16 2.4E-21 130.1 9.4 93 78-179 1-100 (198)
108 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.3E-16 2.8E-21 133.4 10.0 94 78-179 1-102 (242)
109 TIGR03608 L_ocin_972_ABC putat 99.7 7.4E-17 1.6E-21 131.3 8.3 90 80-178 1-102 (206)
110 cd03235 ABC_Metallic_Cations A 99.7 4.9E-17 1.1E-21 133.2 7.3 91 79-177 1-95 (213)
111 PRK13634 cbiO cobalt transport 99.7 1.1E-16 2.3E-21 138.1 9.7 98 77-179 2-113 (290)
112 PRK11300 livG leucine/isoleuci 99.7 1.2E-16 2.5E-21 134.4 9.6 93 76-177 4-105 (255)
113 cd03264 ABC_drug_resistance_li 99.7 1.4E-16 3E-21 130.4 9.7 92 78-179 1-99 (211)
114 PRK13648 cbiO cobalt transport 99.7 1.3E-16 2.8E-21 135.8 9.8 98 75-178 5-110 (269)
115 PRK15112 antimicrobial peptide 99.7 1.4E-16 2.9E-21 135.7 9.9 100 76-178 3-115 (267)
116 PRK13638 cbiO cobalt transport 99.7 1.3E-16 2.8E-21 135.9 9.6 95 77-179 1-105 (271)
117 PRK11701 phnK phosphonate C-P 99.7 2E-16 4.2E-21 133.7 10.6 94 76-177 5-116 (258)
118 PRK10575 iron-hydroxamate tran 99.7 1.1E-16 2.5E-21 135.9 9.1 93 75-176 9-109 (265)
119 PRK09536 btuD corrinoid ABC tr 99.7 9.9E-17 2.1E-21 144.9 9.1 94 75-177 1-102 (402)
120 cd03225 ABC_cobalt_CbiO_domain 99.7 8.9E-17 1.9E-21 131.4 8.0 94 79-178 1-102 (211)
121 PRK13644 cbiO cobalt transport 99.7 1.3E-16 2.9E-21 136.4 9.4 95 77-178 1-104 (274)
122 cd03215 ABC_Carb_Monos_II This 99.7 1.8E-16 3.8E-21 127.6 9.6 89 76-176 3-102 (182)
123 PRK10619 histidine/lysine/argi 99.7 1.6E-16 3.5E-21 134.1 9.8 92 76-176 4-116 (257)
124 PRK14242 phosphate transporter 99.7 2.9E-16 6.4E-21 131.9 11.3 98 75-179 4-113 (253)
125 PRK13548 hmuV hemin importer A 99.7 1.5E-16 3.2E-21 134.8 9.6 92 77-177 2-101 (258)
126 COG0444 DppD ABC-type dipeptid 99.7 1.5E-16 3.3E-21 138.9 9.7 103 77-179 1-117 (316)
127 PRK11124 artP arginine transpo 99.7 1.5E-16 3.1E-21 133.0 9.2 90 77-175 2-105 (242)
128 PRK13633 cobalt transporter AT 99.7 1.7E-16 3.8E-21 136.0 9.9 100 76-179 3-113 (280)
129 PRK13646 cbiO cobalt transport 99.7 1.3E-16 2.9E-21 137.2 9.2 98 77-179 2-113 (286)
130 PRK14273 phosphate ABC transpo 99.7 2.5E-16 5.4E-21 132.6 10.7 98 75-179 5-114 (254)
131 PRK13640 cbiO cobalt transport 99.7 1.4E-16 3.1E-21 136.8 9.3 98 76-179 4-112 (282)
132 PRK14241 phosphate transporter 99.7 2.6E-16 5.7E-21 132.9 10.8 98 76-179 3-112 (258)
133 TIGR03005 ectoine_ehuA ectoine 99.7 1.4E-16 3.1E-21 133.9 9.0 90 78-176 1-111 (252)
134 PRK13642 cbiO cobalt transport 99.7 2E-16 4.4E-21 135.4 10.0 98 76-178 3-108 (277)
135 PRK13641 cbiO cobalt transport 99.7 2.1E-16 4.5E-21 136.1 10.0 97 77-178 2-112 (287)
136 TIGR02982 heterocyst_DevA ABC 99.7 2.2E-16 4.7E-21 130.3 9.7 98 77-179 1-109 (220)
137 PRK14268 phosphate ABC transpo 99.7 2.8E-16 6.1E-21 132.9 10.4 98 74-178 9-118 (258)
138 COG1122 CbiO ABC-type cobalt t 99.7 2.5E-16 5.4E-21 133.2 9.9 102 76-184 2-112 (235)
139 PRK14237 phosphate transporter 99.7 3.3E-16 7.2E-21 133.3 10.8 98 74-178 17-126 (267)
140 COG4608 AppF ABC-type oligopep 99.7 8.6E-17 1.9E-21 137.7 7.2 68 75-145 2-74 (268)
141 PRK13631 cbiO cobalt transport 99.7 3.2E-16 7E-21 137.4 11.0 100 74-178 18-143 (320)
142 PRK14262 phosphate ABC transpo 99.7 3E-16 6.6E-21 131.6 10.4 96 76-178 2-109 (250)
143 cd03231 ABC_CcmA_heme_exporter 99.7 1.9E-16 4E-21 129.4 8.8 90 78-176 1-97 (201)
144 PRK10744 pstB phosphate transp 99.7 3.3E-16 7.2E-21 132.5 10.5 97 75-178 11-119 (260)
145 PRK10261 glutathione transport 99.7 2.2E-16 4.8E-21 149.1 10.4 102 74-179 9-133 (623)
146 TIGR03740 galliderm_ABC gallid 99.7 3.4E-16 7.4E-21 129.3 10.2 93 78-179 1-97 (223)
147 PRK13639 cbiO cobalt transport 99.7 2.1E-16 4.6E-21 135.1 9.3 94 77-177 1-104 (275)
148 PRK14274 phosphate ABC transpo 99.7 3.9E-16 8.5E-21 131.9 10.7 99 74-179 9-119 (259)
149 PRK14250 phosphate ABC transpo 99.7 2E-16 4.3E-21 132.5 8.8 92 76-177 2-101 (241)
150 PRK14256 phosphate ABC transpo 99.7 5.1E-16 1.1E-20 130.6 11.1 97 76-178 3-111 (252)
151 PRK14235 phosphate transporter 99.7 4.6E-16 9.9E-21 132.4 10.8 98 74-178 16-125 (267)
152 PRK14270 phosphate ABC transpo 99.7 4.4E-16 9.6E-21 130.9 10.6 98 75-179 2-111 (251)
153 cd03250 ABCC_MRP_domain1 Domai 99.7 2.1E-16 4.6E-21 128.9 8.4 88 78-176 1-89 (204)
154 PRK09984 phosphonate/organopho 99.7 2.9E-16 6.4E-21 132.9 9.5 96 76-177 3-111 (262)
155 TIGR01978 sufC FeS assembly AT 99.7 2.6E-16 5.5E-21 131.1 9.0 92 78-178 1-103 (243)
156 TIGR02323 CP_lyasePhnK phospho 99.7 3.9E-16 8.5E-21 131.2 10.0 92 76-175 2-111 (253)
157 PRK13541 cytochrome c biogenes 99.7 4.7E-16 1E-20 126.3 10.1 91 77-177 1-95 (195)
158 PRK14269 phosphate ABC transpo 99.7 3.5E-16 7.5E-21 131.3 9.7 95 77-178 2-104 (246)
159 PRK14239 phosphate transporter 99.7 4.7E-16 1E-20 130.5 10.4 97 76-179 4-112 (252)
160 PRK10419 nikE nickel transport 99.7 3.5E-16 7.6E-21 133.3 9.8 99 75-176 1-115 (268)
161 TIGR03415 ABC_choXWV_ATP choli 99.7 2.8E-16 6.1E-21 141.1 9.5 83 94-181 37-135 (382)
162 PRK11231 fecE iron-dicitrate t 99.7 2.7E-16 5.9E-21 132.6 8.8 91 77-176 2-100 (255)
163 PRK14238 phosphate transporter 99.7 6.8E-16 1.5E-20 131.7 11.3 98 74-178 21-130 (271)
164 cd03232 ABC_PDR_domain2 The pl 99.7 4.6E-16 1E-20 126.3 9.7 98 77-177 3-104 (192)
165 PRK13649 cbiO cobalt transport 99.7 4E-16 8.7E-21 133.3 9.8 97 77-178 2-112 (280)
166 PRK14259 phosphate ABC transpo 99.7 4.1E-16 8.9E-21 133.0 9.7 97 75-178 11-119 (269)
167 COG1123 ATPase components of v 99.7 4.4E-16 9.5E-21 144.3 10.6 106 76-181 4-122 (539)
168 PRK11819 putative ABC transpor 99.7 4.5E-16 9.8E-21 145.0 10.8 92 75-177 4-95 (556)
169 PRK10762 D-ribose transporter 99.7 2.3E-16 5E-21 145.0 8.6 93 76-177 3-104 (501)
170 cd03230 ABC_DR_subfamily_A Thi 99.7 3.8E-16 8.3E-21 124.7 8.8 88 78-174 1-95 (173)
171 PRK14253 phosphate ABC transpo 99.7 5.7E-16 1.2E-20 129.9 10.1 96 76-178 2-108 (249)
172 PRK13645 cbiO cobalt transport 99.7 4.6E-16 9.9E-21 133.8 9.7 98 76-178 5-117 (289)
173 cd03223 ABCD_peroxisomal_ALDP 99.7 5.4E-16 1.2E-20 123.5 9.4 86 78-175 1-86 (166)
174 PRK14272 phosphate ABC transpo 99.7 7E-16 1.5E-20 129.4 10.6 93 77-178 4-111 (252)
175 PRK14240 phosphate transporter 99.7 7.3E-16 1.6E-20 129.3 10.6 96 77-179 3-110 (250)
176 cd03213 ABCG_EPDR ABCG transpo 99.7 6.2E-16 1.3E-20 125.9 9.9 96 77-177 3-107 (194)
177 TIGR01277 thiQ thiamine ABC tr 99.7 4.6E-16 1E-20 127.8 9.2 89 78-177 1-95 (213)
178 PRK14248 phosphate ABC transpo 99.7 1.1E-15 2.3E-20 130.0 11.7 97 75-178 19-127 (268)
179 PRK10253 iron-enterobactin tra 99.7 3.6E-16 7.7E-21 132.8 8.8 93 75-176 5-105 (265)
180 PRK14249 phosphate ABC transpo 99.7 8.7E-16 1.9E-20 129.1 10.9 94 76-179 3-111 (251)
181 PRK10771 thiQ thiamine transpo 99.7 4.4E-16 9.6E-21 129.5 9.0 90 77-177 1-96 (232)
182 PRK10418 nikD nickel transport 99.6 1E-15 2.3E-20 129.1 11.2 93 77-177 4-106 (254)
183 PRK13549 xylose transporter AT 99.6 3.2E-16 6.9E-21 144.2 8.8 93 76-177 4-107 (506)
184 PRK14255 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 128.4 11.3 97 76-179 4-112 (252)
185 cd03267 ABC_NatA_like Similar 99.6 3.8E-16 8.3E-21 130.5 8.3 81 95-179 35-122 (236)
186 cd03252 ABCC_Hemolysin The ABC 99.6 3.9E-16 8.4E-21 129.9 8.1 90 78-175 1-98 (237)
187 PRK13547 hmuV hemin importer A 99.6 3.8E-16 8.2E-21 133.9 8.3 91 77-176 1-107 (272)
188 PRK14254 phosphate ABC transpo 99.6 1.2E-15 2.7E-20 131.3 11.4 99 74-179 36-146 (285)
189 TIGR02868 CydC thiol reductant 99.6 3.2E-16 7E-21 144.4 8.2 91 77-176 334-431 (529)
190 TIGR03873 F420-0_ABC_ATP propo 99.6 4.5E-16 9.8E-21 131.3 8.5 90 78-176 2-99 (256)
191 cd03294 ABC_Pro_Gly_Bertaine T 99.6 4E-16 8.7E-21 133.0 8.2 91 79-178 26-128 (269)
192 PRK14251 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 128.3 10.7 96 76-178 3-110 (251)
193 cd03298 ABC_ThiQ_thiamine_tran 99.6 5.9E-16 1.3E-20 126.7 8.8 89 78-177 1-95 (211)
194 PRK14261 phosphate ABC transpo 99.6 9.7E-16 2.1E-20 128.9 10.3 98 75-179 4-113 (253)
195 cd03248 ABCC_TAP TAP, the Tran 99.6 5.4E-16 1.2E-20 128.1 8.5 96 74-176 8-111 (226)
196 PRK11144 modC molybdate transp 99.6 5.9E-16 1.3E-20 137.2 9.3 89 77-177 1-101 (352)
197 PRK14243 phosphate transporter 99.6 1E-15 2.2E-20 130.1 10.3 97 75-178 8-116 (264)
198 COG1134 TagH ABC-type polysacc 99.6 6.9E-16 1.5E-20 130.5 9.1 98 76-183 2-120 (249)
199 COG2274 SunT ABC-type bacterio 99.6 5.5E-16 1.2E-20 148.4 9.5 92 77-176 471-570 (709)
200 COG3840 ThiQ ABC-type thiamine 99.6 1.7E-16 3.8E-21 130.0 5.2 90 77-177 1-96 (231)
201 cd03251 ABCC_MsbA MsbA is an e 99.6 3.9E-16 8.5E-21 129.5 7.4 91 78-176 1-99 (234)
202 TIGR01186 proV glycine betaine 99.6 5E-16 1.1E-20 138.6 8.5 82 95-181 7-100 (363)
203 COG4167 SapF ABC-type antimicr 99.6 1.5E-16 3.2E-21 130.9 4.6 102 75-179 2-116 (267)
204 cd03299 ABC_ModC_like Archeal 99.6 1.1E-15 2.4E-20 127.5 10.0 92 78-179 1-98 (235)
205 PRK14271 phosphate ABC transpo 99.6 9.5E-16 2.1E-20 131.4 9.8 96 75-177 19-125 (276)
206 PRK14246 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 129.4 10.2 96 74-178 7-116 (257)
207 PRK15439 autoinducer 2 ABC tra 99.6 7.9E-16 1.7E-20 141.9 9.9 94 74-176 8-110 (510)
208 cd03229 ABC_Class3 This class 99.6 4.9E-16 1.1E-20 124.6 7.4 88 78-174 1-98 (178)
209 PRK09700 D-allose transporter 99.6 5.7E-16 1.2E-20 142.5 8.9 92 76-176 4-104 (510)
210 cd03234 ABCG_White The White s 99.6 1.1E-15 2.4E-20 126.6 9.7 100 77-178 3-107 (226)
211 cd03244 ABCC_MRP_domain2 Domai 99.6 7.3E-16 1.6E-20 126.8 8.5 89 78-174 3-99 (221)
212 cd03369 ABCC_NFT1 Domain 2 of 99.6 9E-16 2E-20 125.4 9.0 92 76-175 5-104 (207)
213 PRK09544 znuC high-affinity zi 99.6 1.1E-15 2.3E-20 129.5 9.7 87 76-173 3-90 (251)
214 PRK11288 araG L-arabinose tran 99.6 6.6E-16 1.4E-20 141.9 9.1 93 76-177 3-104 (501)
215 PRK14260 phosphate ABC transpo 99.6 1.6E-15 3.4E-20 128.3 10.6 97 75-178 5-113 (259)
216 cd03246 ABCC_Protease_Secretio 99.6 7.6E-16 1.7E-20 123.0 8.0 88 78-173 1-96 (173)
217 PRK14236 phosphate transporter 99.6 2.1E-15 4.6E-20 128.7 11.1 98 74-178 22-131 (272)
218 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.5E-15 3.2E-20 141.4 11.0 91 76-177 3-93 (552)
219 COG1137 YhbG ABC-type (unclass 99.6 3.8E-17 8.2E-22 135.4 0.3 98 75-181 2-108 (243)
220 PRK14245 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 127.1 10.5 97 76-179 2-110 (250)
221 cd03245 ABCC_bacteriocin_expor 99.6 8.4E-16 1.8E-20 126.4 8.2 90 78-175 3-100 (220)
222 TIGR01188 drrA daunorubicin re 99.6 6.4E-16 1.4E-20 133.9 7.9 82 95-181 7-95 (302)
223 cd03228 ABCC_MRP_Like The MRP 99.6 8E-16 1.7E-20 122.7 7.8 88 78-173 1-96 (171)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 5.6E-16 1.2E-20 129.0 7.1 92 78-176 1-100 (238)
225 PRK15064 ABC transporter ATP-b 99.6 1.6E-15 3.4E-20 140.3 10.6 88 77-176 1-88 (530)
226 cd03247 ABCC_cytochrome_bd The 99.6 7.1E-16 1.5E-20 123.6 7.2 88 78-173 1-95 (178)
227 PRK14265 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 129.0 10.4 97 74-177 17-125 (274)
228 cd03254 ABCC_Glucan_exporter_l 99.6 8.7E-16 1.9E-20 127.0 7.8 91 77-176 2-100 (229)
229 cd03300 ABC_PotA_N PotA is an 99.6 2E-15 4.4E-20 125.7 9.9 92 78-178 1-98 (232)
230 CHL00131 ycf16 sulfate ABC tra 99.6 2.1E-15 4.6E-20 126.5 10.1 94 75-177 5-109 (252)
231 PRK14275 phosphate ABC transpo 99.6 2.5E-15 5.3E-20 129.4 10.7 98 74-178 36-145 (286)
232 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 6.3E-16 1.4E-20 146.8 7.6 92 77-176 451-550 (686)
233 TIGR02142 modC_ABC molybdenum 99.6 1.6E-15 3.4E-20 134.5 9.3 86 82-178 4-101 (354)
234 TIGR00968 3a0106s01 sulfate AB 99.6 2.3E-15 5E-20 125.8 9.7 93 78-179 1-99 (237)
235 COG4175 ProV ABC-type proline/ 99.6 4.3E-16 9.4E-21 136.4 5.2 104 76-184 3-138 (386)
236 PRK14263 phosphate ABC transpo 99.6 4E-15 8.6E-20 126.5 10.7 97 75-178 6-114 (261)
237 PRK14266 phosphate ABC transpo 99.6 3.9E-15 8.5E-20 124.9 10.5 96 76-178 2-109 (250)
238 PRK14258 phosphate ABC transpo 99.6 3.6E-15 7.9E-20 126.4 10.3 93 76-178 6-113 (261)
239 PRK14252 phosphate ABC transpo 99.6 4.7E-15 1E-19 125.8 10.9 97 75-178 14-124 (265)
240 KOG0058 Peptide exporter, ABC 99.6 1.8E-15 3.9E-20 143.1 9.1 96 76-178 464-567 (716)
241 PRK11819 putative ABC transpor 99.6 3.1E-15 6.6E-20 139.4 10.3 92 75-177 322-413 (556)
242 cd03253 ABCC_ATM1_transporter 99.6 1.8E-15 3.9E-20 125.7 7.8 90 78-176 1-98 (236)
243 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 1.2E-15 2.6E-20 145.4 7.6 92 77-176 477-576 (710)
244 TIGR02633 xylG D-xylose ABC tr 99.6 2E-15 4.3E-20 138.5 8.7 92 77-177 1-103 (500)
245 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3.4E-15 7.5E-20 138.9 10.3 92 75-177 320-411 (552)
246 PRK15134 microcin C ABC transp 99.6 3.2E-15 7E-20 138.2 9.9 102 76-177 4-119 (529)
247 TIGR03269 met_CoM_red_A2 methy 99.6 3E-15 6.6E-20 138.0 9.7 95 78-180 1-138 (520)
248 PRK11147 ABC transporter ATPas 99.6 4.7E-15 1E-19 140.3 11.1 92 74-176 316-407 (635)
249 PRK15056 manganese/iron transp 99.6 2.7E-15 5.8E-20 128.0 8.5 76 77-158 6-86 (272)
250 PRK15064 ABC transporter ATP-b 99.6 4.9E-15 1.1E-19 137.1 10.8 90 76-175 318-407 (530)
251 TIGR03269 met_CoM_red_A2 methy 99.6 3.5E-15 7.5E-20 137.6 9.7 99 74-177 276-390 (520)
252 PRK14264 phosphate ABC transpo 99.6 6.5E-15 1.4E-19 128.0 10.6 98 74-178 42-151 (305)
253 PRK11176 lipid transporter ATP 99.6 1.8E-15 3.9E-20 140.8 7.5 92 77-176 341-440 (582)
254 TIGR02857 CydD thiol reductant 99.6 2.2E-15 4.8E-20 138.8 8.0 92 77-176 320-419 (529)
255 TIGR00958 3a01208 Conjugate Tr 99.6 2E-15 4.4E-20 144.3 7.9 94 76-176 477-578 (711)
256 TIGR01193 bacteriocin_ABC ABC- 99.6 1.7E-15 3.6E-20 144.4 7.3 91 77-176 473-571 (708)
257 cd03297 ABC_ModC_molybdenum_tr 99.6 5.2E-15 1.1E-19 121.5 9.0 87 78-177 2-100 (214)
258 TIGR01166 cbiO cobalt transpor 99.6 3.6E-15 7.7E-20 120.4 7.8 79 96-178 7-95 (190)
259 cd03291 ABCC_CFTR1 The CFTR su 99.6 1.2E-14 2.6E-19 125.5 11.4 87 73-176 35-121 (282)
260 cd03290 ABCC_SUR1_N The SUR do 99.6 5.9E-15 1.3E-19 121.5 9.1 89 79-176 2-102 (218)
261 PRK14244 phosphate ABC transpo 99.6 8E-15 1.7E-19 123.2 10.1 93 78-177 6-110 (251)
262 PRK09700 D-allose transporter 99.6 2.7E-15 5.8E-20 138.1 7.5 92 75-176 263-365 (510)
263 PRK10790 putative multidrug tr 99.6 3.1E-15 6.7E-20 139.7 8.0 91 77-176 340-438 (592)
264 PRK11160 cysteine/glutathione 99.6 2.5E-15 5.4E-20 140.4 7.2 93 76-176 337-437 (574)
265 COG4559 ABC-type hemin transpo 99.6 2.3E-15 5E-20 125.8 5.8 94 77-179 1-102 (259)
266 cd03288 ABCC_SUR2 The SUR doma 99.6 6.4E-15 1.4E-19 124.6 8.3 91 75-173 17-115 (257)
267 TIGR03375 type_I_sec_LssB type 99.6 3.4E-15 7.5E-20 142.0 7.0 92 77-176 463-562 (694)
268 PRK14257 phosphate ABC transpo 99.6 1.8E-14 3.9E-19 126.9 11.0 98 75-177 78-187 (329)
269 PRK09580 sufC cysteine desulfu 99.6 1.3E-14 2.8E-19 121.3 9.5 61 77-144 1-63 (248)
270 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 8.2E-15 1.8E-19 121.8 8.1 89 78-179 23-111 (224)
271 COG4136 ABC-type uncharacteriz 99.6 3.7E-15 8.1E-20 119.3 5.8 95 77-177 2-102 (213)
272 PRK10982 galactose/methyl gala 99.6 4.7E-15 1E-19 135.9 7.1 88 80-176 1-97 (491)
273 PRK13549 xylose transporter AT 99.6 5.6E-15 1.2E-19 136.0 7.5 98 75-177 257-366 (506)
274 cd03217 ABC_FeS_Assembly ABC-t 99.6 8.9E-15 1.9E-19 119.5 7.9 87 78-173 1-98 (200)
275 PRK13546 teichoic acids export 99.6 2.2E-14 4.8E-19 122.6 10.5 92 77-178 4-111 (264)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 9.7E-15 2.1E-19 114.0 7.5 61 78-145 1-61 (144)
277 TIGR01257 rim_protein retinal- 99.6 1.4E-14 3.1E-19 150.8 10.8 101 75-182 1935-2042(2272)
278 cd03216 ABC_Carb_Monos_I This 99.6 6.8E-15 1.5E-19 116.8 6.7 59 78-143 1-59 (163)
279 COG1132 MdlB ABC-type multidru 99.6 5.6E-15 1.2E-19 137.5 7.1 92 77-177 328-427 (567)
280 PRK13657 cyclic beta-1,2-gluca 99.6 7.2E-15 1.6E-19 137.3 7.8 91 77-176 334-432 (588)
281 KOG0057 Mitochondrial Fe/S clu 99.6 8.9E-15 1.9E-19 135.0 8.1 90 77-176 351-448 (591)
282 TIGR01842 type_I_sec_PrtD type 99.5 2.3E-14 5.1E-19 132.8 10.4 91 77-175 316-414 (544)
283 COG4619 ABC-type uncharacteriz 99.5 7.4E-16 1.6E-20 125.1 0.3 83 96-184 18-108 (223)
284 cd03289 ABCC_CFTR2 The CFTR su 99.5 1.3E-14 2.9E-19 124.8 8.0 88 78-174 3-98 (275)
285 PRK11174 cysteine/glutathione 99.5 9.6E-15 2.1E-19 136.2 7.7 90 77-176 349-446 (588)
286 TIGR02633 xylG D-xylose ABC tr 99.5 8E-15 1.7E-19 134.6 7.1 97 75-176 255-363 (500)
287 TIGR02204 MsbA_rel ABC transpo 99.5 1E-14 2.2E-19 135.5 7.7 94 76-176 336-437 (576)
288 PRK10535 macrolide transporter 99.5 3.4E-14 7.3E-19 134.9 11.4 98 76-178 3-112 (648)
289 COG4598 HisP ABC-type histidin 99.5 1.3E-15 2.8E-20 125.1 1.3 93 75-176 4-117 (256)
290 TIGR02203 MsbA_lipidA lipid A 99.5 1.1E-14 2.3E-19 135.1 7.5 92 77-176 330-429 (571)
291 TIGR01184 ntrCD nitrate transp 99.5 2.2E-14 4.8E-19 119.5 7.7 76 97-177 1-79 (230)
292 COG4618 ArpD ABC-type protease 99.5 3.3E-14 7.1E-19 130.5 9.5 112 56-175 313-432 (580)
293 PRK10789 putative multidrug tr 99.5 1.5E-14 3.2E-19 135.0 7.4 92 77-176 313-412 (569)
294 TIGR01257 rim_protein retinal- 99.5 4.8E-14 1E-18 147.0 11.4 101 75-182 926-1033(2272)
295 PRK10636 putative ABC transpor 99.5 4.2E-14 9E-19 134.1 10.2 89 74-173 309-398 (638)
296 COG4987 CydC ABC-type transpor 99.5 8.5E-15 1.8E-19 135.0 5.3 92 77-176 336-435 (573)
297 COG4133 CcmA ABC-type transpor 99.5 1.5E-14 3.2E-19 118.7 6.0 97 77-182 2-105 (209)
298 TIGR01846 type_I_sec_HlyB type 99.5 1.6E-14 3.4E-19 137.6 7.1 92 77-176 455-554 (694)
299 TIGR02770 nickel_nikD nickel i 99.5 3.4E-14 7.4E-19 118.1 8.2 79 97-178 2-90 (230)
300 cd03214 ABC_Iron-Siderophores_ 99.5 2.4E-14 5.2E-19 115.0 6.4 59 79-144 1-59 (180)
301 PRK13409 putative ATPase RIL; 99.5 5.8E-14 1.3E-18 132.3 9.5 88 74-176 337-424 (590)
302 PRK15177 Vi polysaccharide exp 99.5 4.5E-14 9.8E-19 116.7 7.8 76 96-181 2-78 (213)
303 PRK10938 putative molybdenum t 99.5 3E-14 6.5E-19 130.5 7.4 61 76-143 2-62 (490)
304 TIGR01192 chvA glucan exporter 99.5 3.6E-14 7.8E-19 133.0 8.0 91 77-176 334-432 (585)
305 PRK10938 putative molybdenum t 99.5 3.9E-14 8.5E-19 129.7 7.7 63 74-143 257-320 (490)
306 COG4674 Uncharacterized ABC-ty 99.5 1.3E-14 2.7E-19 120.2 3.7 97 76-181 4-110 (249)
307 KOG0055 Multidrug/pheromone ex 99.5 3.1E-14 6.6E-19 141.1 7.0 94 77-177 350-451 (1228)
308 PTZ00265 multidrug resistance 99.5 3.6E-14 7.7E-19 144.9 7.6 96 77-176 1165-1319(1466)
309 TIGR00954 3a01203 Peroxysomal 99.5 1E-13 2.2E-18 131.9 10.0 89 76-176 450-538 (659)
310 PRK10636 putative ABC transpor 99.5 4.7E-14 1E-18 133.7 7.2 61 77-144 1-61 (638)
311 PTZ00265 multidrug resistance 99.5 5.7E-14 1.2E-18 143.4 8.1 94 77-177 382-484 (1466)
312 PRK10762 D-ribose transporter 99.5 6.7E-14 1.5E-18 128.7 7.6 89 75-176 255-354 (501)
313 PRK11147 ABC transporter ATPas 99.5 6.2E-14 1.3E-18 132.7 7.5 63 75-144 1-63 (635)
314 COG4161 ArtP ABC-type arginine 99.5 3.3E-14 7.1E-19 115.3 4.6 97 78-183 3-114 (242)
315 PRK03695 vitamin B12-transport 99.5 5.4E-14 1.2E-18 118.5 6.1 84 79-176 2-93 (248)
316 PTZ00243 ABC transporter; Prov 99.5 6.8E-14 1.5E-18 143.6 8.0 91 77-175 1308-1406(1560)
317 COG4988 CydD ABC-type transpor 99.5 7.9E-14 1.7E-18 129.4 7.5 92 77-177 320-419 (559)
318 PRK13545 tagH teichoic acids e 99.5 2.2E-13 4.7E-18 126.8 10.2 92 75-177 19-110 (549)
319 PLN03232 ABC transporter C fam 99.5 7E-14 1.5E-18 143.1 7.5 91 77-175 1234-1332(1495)
320 PLN03130 ABC transporter C fam 99.5 8.2E-14 1.8E-18 143.4 7.9 91 77-175 1237-1335(1622)
321 PRK10522 multidrug transporter 99.5 6.3E-14 1.4E-18 130.2 6.4 77 77-159 322-406 (547)
322 PLN03211 ABC transporter G-25; 99.5 1E-13 2.2E-18 132.1 7.7 92 79-179 70-167 (659)
323 PF00005 ABC_tran: ABC transpo 99.5 1.9E-14 4.1E-19 109.5 2.1 71 97-172 1-79 (137)
324 COG4107 PhnK ABC-type phosphon 99.5 4.3E-14 9.2E-19 115.7 4.3 61 75-142 4-64 (258)
325 TIGR00956 3a01205 Pleiotropic 99.5 2.2E-13 4.8E-18 138.7 10.4 103 76-180 758-864 (1394)
326 TIGR00957 MRP_assoc_pro multi 99.4 1.5E-13 3.4E-18 140.8 7.7 90 77-174 1284-1381(1522)
327 PRK10982 galactose/methyl gala 99.4 1.7E-13 3.7E-18 125.6 7.0 61 75-144 248-308 (491)
328 COG0488 Uup ATPase components 99.4 4.8E-13 1.1E-17 124.7 10.1 90 75-176 1-90 (530)
329 TIGR01194 cyc_pep_trnsptr cycl 99.4 2.1E-13 4.4E-18 127.1 6.7 80 77-159 337-425 (555)
330 COG4586 ABC-type uncharacteriz 99.4 1.4E-13 3E-18 118.7 4.9 69 76-147 2-87 (325)
331 COG1101 PhnK ABC-type uncharac 99.4 9.2E-14 2E-18 116.5 3.7 100 77-179 1-109 (263)
332 COG4604 CeuD ABC-type enteroch 99.4 1.2E-13 2.7E-18 114.5 4.4 62 77-145 1-62 (252)
333 PRK11288 araG L-arabinose tran 99.4 2.4E-13 5.2E-18 125.1 6.7 90 75-176 255-355 (501)
334 PLN03073 ABC transporter F fam 99.4 4.6E-13 1E-17 128.7 9.0 75 75-158 506-580 (718)
335 PRK15439 autoinducer 2 ABC tra 99.4 3.7E-13 8E-18 124.2 7.3 89 74-175 265-364 (510)
336 COG4172 ABC-type uncharacteriz 99.4 1.1E-12 2.3E-17 118.4 9.8 106 74-179 3-122 (534)
337 cd03222 ABC_RNaseL_inhibitor T 99.4 2.9E-13 6.3E-18 109.8 5.5 56 81-144 4-59 (177)
338 KOG0055 Multidrug/pheromone ex 99.4 4.4E-13 9.5E-18 133.0 7.1 93 77-176 987-1087(1228)
339 KOG0056 Heavy metal exporter H 99.4 4.2E-13 9.2E-18 123.4 6.5 90 77-175 537-634 (790)
340 TIGR01271 CFTR_protein cystic 99.4 7E-13 1.5E-17 135.8 8.7 89 77-174 1217-1313(1490)
341 cd00267 ABC_ATPase ABC (ATP-bi 99.4 9E-13 1.9E-17 103.3 6.3 58 80-144 2-59 (157)
342 COG0396 sufC Cysteine desulfur 99.4 1.8E-12 3.8E-17 109.3 8.4 99 75-178 1-107 (251)
343 cd03237 ABC_RNaseL_inhibitor_d 99.4 2E-12 4.4E-17 109.4 8.3 72 97-177 10-86 (246)
344 PLN03130 ABC transporter C fam 99.4 1.9E-12 4.1E-17 133.4 9.1 89 76-176 613-702 (1622)
345 COG4148 ModC ABC-type molybdat 99.4 4.3E-13 9.3E-18 116.2 3.7 88 82-180 5-104 (352)
346 TIGR00957 MRP_assoc_pro multi 99.4 1.8E-12 3.9E-17 133.0 8.9 87 77-176 636-722 (1522)
347 PLN03232 ABC transporter C fam 99.4 1.5E-12 3.3E-17 133.4 8.2 90 77-177 614-703 (1495)
348 TIGR03771 anch_rpt_ABC anchore 99.3 2.3E-12 5E-17 106.9 7.1 72 102-176 1-75 (223)
349 cd03236 ABC_RNaseL_inhibitor_d 99.3 1.2E-12 2.6E-17 111.5 4.6 55 81-142 4-58 (255)
350 COG0488 Uup ATPase components 99.3 6.2E-12 1.3E-16 117.3 9.6 92 74-175 318-409 (530)
351 TIGR00955 3a01204 The Eye Pigm 99.3 2.6E-12 5.7E-17 121.4 6.9 84 95-180 39-127 (617)
352 COG4778 PhnL ABC-type phosphon 99.3 2.1E-12 4.6E-17 105.3 5.0 64 77-143 4-70 (235)
353 COG1119 ModF ABC-type molybden 99.3 5.2E-12 1.1E-16 107.2 6.9 62 73-141 27-88 (257)
354 PLN03140 ABC transporter G fam 99.3 9.8E-12 2.1E-16 127.2 10.3 100 77-179 867-980 (1470)
355 PLN03073 ABC transporter F fam 99.3 4.3E-12 9.4E-17 122.1 6.7 64 74-141 174-237 (718)
356 PLN03140 ABC transporter G fam 99.3 7.5E-12 1.6E-16 128.0 8.7 83 94-181 178-268 (1470)
357 KOG0061 Transporter, ABC super 99.3 1.6E-11 3.5E-16 116.3 10.1 102 77-180 25-132 (613)
358 KOG0059 Lipid exporter ABCA1 a 99.3 5.5E-12 1.2E-16 123.7 6.3 101 76-184 563-672 (885)
359 COG4615 PvdE ABC-type sideroph 99.2 1.6E-11 3.4E-16 110.7 6.3 62 77-144 322-383 (546)
360 TIGR00956 3a01205 Pleiotropic 99.2 2.5E-11 5.5E-16 123.8 8.4 84 95-180 75-166 (1394)
361 TIGR01271 CFTR_protein cystic 99.2 2.1E-11 4.5E-16 125.1 7.6 71 96-177 441-511 (1490)
362 cd00820 PEPCK_HprK Phosphoenol 99.2 1.9E-11 4.2E-16 92.0 4.9 68 95-176 3-78 (107)
363 cd03238 ABC_UvrA The excision 99.2 2.5E-11 5.3E-16 98.4 4.8 36 94-129 8-43 (176)
364 KOG0054 Multidrug resistance-a 99.2 4.9E-11 1.1E-15 120.4 7.7 89 77-173 1138-1234(1381)
365 PRK13409 putative ATPase RIL; 99.1 3E-11 6.5E-16 114.0 4.5 54 82-142 78-131 (590)
366 PTZ00243 ABC transporter; Prov 99.1 1.7E-10 3.7E-15 118.8 7.6 70 96-176 675-744 (1560)
367 COG5265 ATM1 ABC-type transpor 99.1 1.1E-10 2.5E-15 105.6 4.8 91 77-176 262-360 (497)
368 KOG0054 Multidrug resistance-a 99.0 5.8E-10 1.3E-14 112.8 8.8 92 74-177 515-606 (1381)
369 TIGR01187 potA spermidine/putr 99.0 3.2E-10 7E-15 99.5 5.5 64 112-180 1-70 (325)
370 cd03270 ABC_UvrA_I The excisio 99.0 5.4E-10 1.2E-14 93.2 4.0 31 94-124 8-38 (226)
371 COG4178 ABC-type uncharacteriz 98.9 2.8E-09 6E-14 100.5 9.0 62 75-142 390-451 (604)
372 KOG0060 Long-chain acyl-CoA tr 98.9 4.2E-09 9.1E-14 98.4 8.3 96 74-177 430-525 (659)
373 COG4170 SapD ABC-type antimicr 98.9 1.5E-09 3.2E-14 91.6 4.7 58 75-132 1-58 (330)
374 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.2E-09 2.6E-14 100.7 3.8 44 95-143 20-64 (504)
375 cd03278 ABC_SMC_barmotin Barmo 98.8 4.9E-09 1.1E-13 86.0 6.0 33 99-132 15-47 (197)
376 KOG0927 Predicted transporter 98.8 2.9E-09 6.2E-14 98.9 4.3 64 74-143 386-449 (614)
377 KOG0065 Pleiotropic drug resis 98.8 1.1E-08 2.4E-13 102.7 7.5 102 77-181 787-893 (1391)
378 cd01130 VirB11-like_ATPase Typ 98.8 1.5E-08 3.3E-13 82.0 6.7 77 99-178 17-98 (186)
379 COG4138 BtuD ABC-type cobalami 98.6 3.8E-08 8.3E-13 81.0 5.2 57 77-145 3-59 (248)
380 KOG2355 Predicted ABC-type tra 98.6 3.1E-08 6.7E-13 83.3 4.4 54 75-131 11-64 (291)
381 COG2401 ABC-type ATPase fused 98.6 2.9E-08 6.2E-13 90.4 4.4 46 96-141 398-448 (593)
382 KOG0066 eIF2-interacting prote 98.6 5.7E-08 1.2E-12 89.2 5.6 66 72-143 581-646 (807)
383 KOG0064 Peroxisomal long-chain 98.6 9.1E-08 2E-12 89.2 6.6 72 78-158 482-553 (728)
384 cd03272 ABC_SMC3_euk Eukaryoti 98.6 5.8E-08 1.2E-12 80.9 4.6 44 78-131 4-47 (243)
385 cd03274 ABC_SMC4_euk Eukaryoti 98.6 5.8E-08 1.3E-12 80.5 4.4 44 78-131 6-49 (212)
386 PRK07196 fliI flagellum-specif 98.6 8.1E-08 1.8E-12 87.9 5.7 38 94-132 143-180 (434)
387 PRK06002 fliI flagellum-specif 98.6 1.1E-07 2.5E-12 87.2 6.6 59 76-141 138-196 (450)
388 cd03279 ABC_sbcCD SbcCD and ot 98.5 4.6E-08 1E-12 80.6 3.2 47 77-131 5-52 (213)
389 cd03283 ABC_MutS-like MutS-lik 98.5 8.4E-08 1.8E-12 78.9 4.6 33 97-131 17-49 (199)
390 KOG0062 ATPase component of AB 98.5 7.1E-08 1.5E-12 89.3 4.4 50 76-129 79-128 (582)
391 KOG0927 Predicted transporter 98.5 1.3E-07 2.7E-12 88.2 5.4 54 76-133 74-127 (614)
392 COG3845 ABC-type uncharacteriz 98.5 5.4E-07 1.2E-11 83.0 8.5 99 73-178 253-363 (501)
393 KOG2702 Predicted panthothenat 98.4 1.2E-07 2.6E-12 80.7 3.2 79 104-188 116-194 (323)
394 cd03243 ABC_MutS_homologs The 98.4 2.7E-07 5.9E-12 75.4 4.4 33 99-131 21-53 (202)
395 TIGR00235 udk uridine kinase. 98.4 2.1E-07 4.5E-12 76.3 3.6 28 105-132 4-31 (207)
396 TIGR00767 rho transcription te 98.4 6.2E-07 1.3E-11 81.5 6.3 53 77-132 130-193 (415)
397 cd03282 ABC_MSH4_euk MutS4 hom 98.4 3.8E-07 8.3E-12 75.4 4.5 36 96-131 18-53 (204)
398 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.7E-07 7.9E-12 74.6 4.1 30 99-128 19-49 (200)
399 cd03271 ABC_UvrA_II The excisi 98.3 4.5E-07 9.7E-12 77.9 4.1 33 95-127 9-41 (261)
400 COG1245 Predicted ATPase, RNas 98.3 5.2E-07 1.1E-11 83.0 4.5 58 75-140 340-397 (591)
401 PF13555 AAA_29: P-loop contai 98.3 9.3E-07 2E-11 60.4 4.7 34 99-132 14-48 (62)
402 PRK09825 idnK D-gluconate kina 98.3 5E-07 1.1E-11 72.9 3.8 27 106-132 2-28 (176)
403 COG1129 MglA ABC-type sugar tr 98.3 1E-06 2.2E-11 81.8 6.2 91 74-176 260-361 (500)
404 cd03275 ABC_SMC1_euk Eukaryoti 98.3 9.8E-07 2.1E-11 74.4 5.4 44 78-132 4-47 (247)
405 PRK00300 gmk guanylate kinase; 98.3 6.4E-07 1.4E-11 72.6 3.8 28 105-132 3-30 (205)
406 PRK10078 ribose 1,5-bisphospho 98.3 5.8E-07 1.3E-11 72.5 3.4 26 107-132 2-27 (186)
407 PRK05480 uridine/cytidine kina 98.3 2.2E-06 4.7E-11 70.1 6.4 28 105-132 4-31 (209)
408 cd02025 PanK Pantothenate kina 98.3 1.2E-06 2.6E-11 73.1 5.0 24 109-132 1-24 (220)
409 cd01136 ATPase_flagellum-secre 98.2 1.1E-06 2.4E-11 77.9 4.6 43 94-140 57-99 (326)
410 PRK06995 flhF flagellar biosyn 98.2 2.4E-06 5.2E-11 79.3 6.8 73 95-184 244-316 (484)
411 PRK07594 type III secretion sy 98.2 8.8E-07 1.9E-11 81.1 3.9 58 77-141 129-186 (433)
412 cd03273 ABC_SMC2_euk Eukaryoti 98.2 1.1E-06 2.5E-11 74.0 4.0 26 107-132 25-50 (251)
413 PRK07721 fliI flagellum-specif 98.2 1.4E-06 3E-11 80.0 4.5 44 94-141 146-189 (438)
414 cd03240 ABC_Rad50 The catalyti 98.2 1.5E-06 3.2E-11 71.6 4.2 28 100-128 16-43 (204)
415 PRK08149 ATP synthase SpaL; Va 98.2 1.7E-06 3.7E-11 79.1 4.8 38 94-132 139-176 (428)
416 PRK09270 nucleoside triphospha 98.2 1.8E-06 3.9E-11 72.0 3.8 34 104-140 30-63 (229)
417 KOG0065 Pleiotropic drug resis 98.1 4.7E-06 1E-10 84.3 7.1 89 94-184 128-221 (1391)
418 TIGR02322 phosphon_PhnN phosph 98.1 2E-06 4.4E-11 68.4 3.7 26 107-132 1-26 (179)
419 TIGR02788 VirB11 P-type DNA tr 98.1 5.1E-06 1.1E-10 72.6 6.5 39 100-141 137-175 (308)
420 TIGR00630 uvra excinuclease AB 98.1 3.2E-06 7E-11 83.8 5.6 43 76-127 611-653 (924)
421 cd03287 ABC_MSH3_euk MutS3 hom 98.1 2.9E-06 6.3E-11 71.2 4.4 43 97-141 21-63 (222)
422 TIGR03263 guanyl_kin guanylate 98.1 2.4E-06 5.2E-11 67.8 3.3 26 107-132 1-26 (180)
423 cd03284 ABC_MutS1 MutS1 homolo 98.1 2.8E-06 6E-11 70.7 3.8 34 97-131 21-54 (216)
424 PRK09862 putative ATP-dependen 98.1 3.4E-06 7.5E-11 78.7 4.5 49 80-132 187-235 (506)
425 TIGR02546 III_secr_ATP type II 98.1 3.2E-06 6.8E-11 77.3 4.0 44 94-141 133-176 (422)
426 PRK09099 type III secretion sy 98.1 4.1E-06 8.9E-11 77.0 4.7 44 94-141 151-194 (441)
427 TIGR01026 fliI_yscN ATPase Fli 98.1 3.3E-06 7.1E-11 77.6 4.1 43 94-140 151-193 (440)
428 PRK05688 fliI flagellum-specif 98.1 3.8E-06 8.2E-11 77.3 4.3 38 94-132 156-193 (451)
429 cd02023 UMPK Uridine monophosp 98.0 2.9E-06 6.3E-11 68.7 3.0 24 109-132 1-24 (198)
430 cd02026 PRK Phosphoribulokinas 98.0 4E-06 8.6E-11 72.4 3.9 31 109-142 1-31 (273)
431 PRK08972 fliI flagellum-specif 98.0 3.8E-06 8.2E-11 77.1 3.8 38 94-132 150-187 (444)
432 PLN02796 D-glycerate 3-kinase 98.0 2E-06 4.3E-11 76.7 1.7 38 95-132 80-125 (347)
433 TIGR03497 FliI_clade2 flagella 98.0 6.1E-06 1.3E-10 75.3 4.7 44 94-141 125-168 (413)
434 PRK05922 type III secretion sy 98.0 7.1E-06 1.5E-10 75.2 4.8 44 94-141 145-188 (434)
435 PRK06315 type III secretion sy 98.0 3.9E-06 8.4E-11 77.1 3.0 38 94-132 152-189 (442)
436 PF13476 AAA_23: AAA domain; P 98.0 7E-06 1.5E-10 65.0 4.1 34 98-132 11-44 (202)
437 PRK06793 fliI flagellum-specif 98.0 9.2E-06 2E-10 74.5 5.4 58 77-141 130-187 (432)
438 cd03285 ABC_MSH2_euk MutS2 hom 98.0 7E-06 1.5E-10 68.7 4.2 34 97-130 20-53 (222)
439 TIGR03496 FliI_clade1 flagella 98.0 7.7E-06 1.7E-10 74.5 4.8 51 78-132 112-162 (411)
440 PRK08472 fliI flagellum-specif 98.0 6.7E-06 1.5E-10 75.4 4.3 38 94-132 145-182 (434)
441 TIGR03498 FliI_clade3 flagella 98.0 6.4E-06 1.4E-10 75.2 4.0 43 95-141 129-171 (418)
442 PTZ00301 uridine kinase; Provi 98.0 1.1E-05 2.5E-10 67.1 5.1 24 108-131 4-27 (210)
443 PRK00349 uvrA excinuclease ABC 98.0 7.1E-06 1.5E-10 81.5 4.4 44 76-128 613-656 (943)
444 PRK06936 type III secretion sy 97.9 8.1E-06 1.7E-10 75.0 4.3 38 94-132 150-187 (439)
445 PRK13477 bifunctional pantoate 97.9 1.2E-05 2.6E-10 75.1 5.4 46 95-141 273-318 (512)
446 TIGR00554 panK_bact pantothena 97.9 7.8E-06 1.7E-10 71.3 3.5 26 107-132 62-87 (290)
447 PF13207 AAA_17: AAA domain; P 97.9 1E-05 2.2E-10 59.9 3.1 24 109-132 1-24 (121)
448 PRK06820 type III secretion sy 97.9 1.5E-05 3.2E-10 73.3 4.7 38 94-132 151-188 (440)
449 PRK07960 fliI flagellum-specif 97.9 9E-06 1.9E-10 74.9 3.2 38 94-132 163-200 (455)
450 PRK00635 excinuclease ABC subu 97.9 1.5E-05 3.1E-10 83.4 4.9 46 78-127 936-981 (1809)
451 TIGR02858 spore_III_AA stage I 97.9 1.2E-05 2.6E-10 69.5 3.7 33 108-143 112-144 (270)
452 smart00382 AAA ATPases associa 97.9 1.5E-05 3.2E-10 58.0 3.6 27 106-132 1-27 (148)
453 PRK00889 adenylylsulfate kinas 97.9 1.5E-05 3.3E-10 63.3 4.0 28 105-132 2-29 (175)
454 cd03276 ABC_SMC6_euk Eukaryoti 97.9 1.9E-05 4.1E-10 64.8 4.5 34 98-132 13-46 (198)
455 PRK00635 excinuclease ABC subu 97.8 1.2E-05 2.5E-10 84.1 3.8 41 76-125 599-639 (1809)
456 PRK01889 GTPase RsgA; Reviewed 97.8 9.3E-06 2E-10 72.5 2.5 43 97-142 185-227 (356)
457 PRK03846 adenylylsulfate kinas 97.8 1.9E-05 4.2E-10 64.3 3.8 28 105-132 22-49 (198)
458 TIGR01360 aden_kin_iso1 adenyl 97.8 1.3E-05 2.8E-10 63.6 2.2 22 107-128 3-24 (188)
459 PRK14722 flhF flagellar biosyn 97.8 2.3E-05 5.1E-10 70.6 3.9 38 94-131 124-161 (374)
460 PRK10246 exonuclease subunit S 97.8 4.1E-05 8.9E-10 76.9 6.1 47 78-132 6-55 (1047)
461 PRK09183 transposase/IS protei 97.8 2.1E-05 4.6E-10 67.2 3.5 52 79-131 73-126 (259)
462 PRK10416 signal recognition pa 97.8 2.6E-05 5.6E-10 68.8 4.0 35 104-141 111-145 (318)
463 PF00485 PRK: Phosphoribulokin 97.7 2.3E-05 5E-10 63.6 3.4 24 109-132 1-24 (194)
464 KOG0066 eIF2-interacting prote 97.7 3E-05 6.5E-10 71.7 4.3 51 77-131 264-314 (807)
465 PRK14721 flhF flagellar biosyn 97.7 2.6E-05 5.6E-10 71.3 3.8 28 104-131 188-215 (420)
466 PRK08533 flagellar accessory p 97.7 5.1E-05 1.1E-09 63.7 5.3 29 104-132 21-50 (230)
467 cd03227 ABC_Class2 ABC-type Cl 97.7 4.2E-05 9.2E-10 60.4 4.6 34 99-132 13-46 (162)
468 cd00879 Sar1 Sar1 subfamily. 97.7 2E-05 4.3E-10 62.6 2.6 33 96-129 9-41 (190)
469 TIGR00750 lao LAO/AO transport 97.7 2.9E-05 6.3E-10 67.5 3.7 37 96-132 23-59 (300)
470 TIGR00150 HI0065_YjeE ATPase, 97.7 3.9E-05 8.4E-10 59.8 3.9 30 103-132 18-47 (133)
471 cd03281 ABC_MSH5_euk MutS5 hom 97.7 4.5E-05 9.7E-10 63.3 4.4 30 100-129 20-51 (213)
472 PF03193 DUF258: Protein of un 97.7 3.4E-05 7.4E-10 62.0 3.6 27 106-132 34-60 (161)
473 cd03286 ABC_MSH6_euk MutS6 hom 97.7 4.6E-05 9.9E-10 63.8 4.5 35 97-131 20-54 (218)
474 PRK14723 flhF flagellar biosyn 97.7 3.1E-05 6.7E-10 75.4 3.8 37 96-132 174-210 (767)
475 PRK08233 hypothetical protein; 97.7 3.9E-05 8.4E-10 60.5 3.7 27 106-132 2-28 (182)
476 PRK07429 phosphoribulokinase; 97.7 4E-05 8.7E-10 67.9 4.1 25 108-132 9-33 (327)
477 PRK15494 era GTPase Era; Provi 97.7 3.6E-05 7.7E-10 68.2 3.7 51 78-131 19-76 (339)
478 cd00071 GMPK Guanosine monopho 97.7 3E-05 6.6E-10 60.0 2.8 24 109-132 1-24 (137)
479 PRK05541 adenylylsulfate kinas 97.7 4.3E-05 9.3E-10 60.7 3.8 29 104-132 4-32 (176)
480 PRK00098 GTPase RsgA; Reviewed 97.7 3.7E-05 7.9E-10 66.9 3.7 34 106-142 163-196 (298)
481 COG1072 CoaA Panthothenate kin 97.7 5.9E-05 1.3E-09 65.4 4.8 64 108-187 83-146 (283)
482 cd01854 YjeQ_engC YjeQ/EngC. 97.7 3.7E-05 8.1E-10 66.5 3.6 39 99-141 154-192 (287)
483 TIGR00455 apsK adenylylsulfate 97.7 4.5E-05 9.8E-10 61.1 3.8 32 101-132 12-43 (184)
484 PRK07261 topology modulation p 97.7 4.3E-05 9.3E-10 61.2 3.6 24 109-132 2-25 (171)
485 PRK11545 gntK gluconate kinase 97.7 1.7E-05 3.6E-10 63.1 1.2 20 113-132 1-20 (163)
486 cd02024 NRK1 Nicotinamide ribo 97.6 5.6E-05 1.2E-09 62.0 4.2 24 109-132 1-24 (187)
487 TIGR03185 DNA_S_dndD DNA sulfu 97.6 9.2E-05 2E-09 70.8 6.2 46 78-131 6-52 (650)
488 TIGR02524 dot_icm_DotB Dot/Icm 97.6 6.4E-05 1.4E-09 67.4 4.7 28 105-132 132-159 (358)
489 PRK10751 molybdopterin-guanine 97.6 4.5E-05 9.8E-10 61.9 3.4 25 108-132 7-31 (173)
490 TIGR03015 pepcterm_ATPase puta 97.6 2.2E-05 4.7E-10 65.9 1.6 37 96-132 31-68 (269)
491 PLN02318 phosphoribulokinase/u 97.6 5.1E-05 1.1E-09 72.2 4.1 25 108-132 66-90 (656)
492 PLN03046 D-glycerate 3-kinase; 97.6 8.1E-05 1.8E-09 68.3 5.2 25 108-132 213-237 (460)
493 cd01128 rho_factor Transcripti 97.6 5.7E-05 1.2E-09 64.5 3.8 34 99-132 8-41 (249)
494 PRK04863 mukB cell division pr 97.6 7.3E-05 1.6E-09 77.4 5.1 39 99-141 20-58 (1486)
495 PRK08927 fliI flagellum-specif 97.6 7.6E-05 1.7E-09 68.7 4.6 34 99-132 150-183 (442)
496 TIGR02168 SMC_prok_B chromosom 97.6 7.9E-05 1.7E-09 73.7 5.0 31 100-131 17-47 (1179)
497 TIGR01526 nadR_NMN_Atrans nico 97.6 3.6E-05 7.9E-10 67.9 2.3 34 99-132 152-187 (325)
498 cd04159 Arl10_like Arl10-like 97.6 4.8E-05 1E-09 57.2 2.6 22 110-131 2-23 (159)
499 COG0572 Udk Uridine kinase [Nu 97.6 0.00012 2.5E-09 61.6 5.0 26 107-132 8-33 (218)
500 PRK05439 pantothenate kinase; 97.5 9.7E-05 2.1E-09 65.1 4.6 25 108-132 87-111 (311)
No 1
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=4.7e-26 Score=210.17 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=120.5
Q ss_pred CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCc-------CCCCCeEEEeeeEEEcCcc
Q 029679 18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQ-------QREIPVVEARCMDEVYDAL 90 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~-------~~~~~~l~~~~l~~~~~~~ 90 (189)
.-.+++|++|++-|-++ ..++|.+|+||||+.|+++.|........ ....|+++++|++|.|...
T Consensus 222 aDrv~Vm~~G~iVE~G~--------~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~ 293 (539)
T COG1123 222 ADRVVVMYKGEIVETGP--------TEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSR 293 (539)
T ss_pred cCeEEEEECCEEEEecC--------HHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccc
Confidence 45678999999887664 57899999999999999998875432111 1156899999999999741
Q ss_pred -------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------CCCeEE
Q 029679 91 -------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------PPDVAT 153 (189)
Q Consensus 91 -------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------~~~~~~ 153 (189)
.+.+.||+||||++++||++||||+||||||||+|+|+||++ |++|.+...+.. .++..+
T Consensus 294 ~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~~~~~~~~~~~~r~~~Q 370 (539)
T COG1123 294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQDLDLTGGELRRLRRRIQ 370 (539)
T ss_pred cccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcccccccchhhhhhhheE
Confidence 134789999999999999999999999999999999999999 899986433211 123456
Q ss_pred EEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
++||+.+.-..+.+||.+++..++...+
T Consensus 371 mvFQdp~~SLnPr~tV~~~i~epL~~~~ 398 (539)
T COG1123 371 MVFQDPYSSLNPRMTVGDILAEPLRIHG 398 (539)
T ss_pred EEEeCcccccCccccHHHHHHhHHhhhc
Confidence 6777777655556999999999887543
No 2
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=3.5e-24 Score=191.73 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=120.3
Q ss_pred cccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCcCCCCCeEEEeeeEEEcCc---c----cee
Q 029679 21 STPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDA---L----AQR 93 (189)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~---~----~~~ 93 (189)
..+|.+||+-|-+. ..++|.+|+||||+.|++|.|...+++.+....++|+++++.++|.. . ...
T Consensus 228 V~VM~~G~ivE~~~--------t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~ 299 (534)
T COG4172 228 VYVMQHGEIVETGT--------TETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDH 299 (534)
T ss_pred EEEEeccEEeecCc--------HHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchh
Confidence 46899999877665 46789999999999999999987666655567789999999999943 1 124
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------CCCeEEEEecCCCCC
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------PPDVATVLPMDGFHL 162 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------~~~~~~vv~~~~~~l 162 (189)
+.||++|||++++|+++||||+||||||||.++|.+|++ ++ |.|...+.. .++...++|||.|..
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 779999999999999999999999999999999999995 44 776443321 234567889998877
Q ss_pred CCCccChhhhHHHHHHHcC
Q 029679 163 YLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 163 ~~~~ltv~enl~~~~~~~g 181 (189)
..+.++|.+-+..++....
T Consensus 376 LsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred CCcccCHHHHhhhhhhhcC
Confidence 6667999999998887654
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=3.4e-23 Score=183.54 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=83.6
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~ 148 (189)
++.|+++|++|.|++ ..+|+||||+|++||+++|+||||||||||||+|+|+.. |++|.|..++.. .
T Consensus 3 ~~~l~i~~v~k~yg~----~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGD----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCC----eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 467999999999985 357889999999999999999999999999999999999 999997554422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
++..++|||+ |.+|++ |||.+|++|+++.++
T Consensus 76 kR~ig~VFQ~-YALFPH-ltV~~NVafGLk~~~ 106 (352)
T COG3842 76 KRPIGMVFQS-YALFPH-MTVEENVAFGLKVRK 106 (352)
T ss_pred hcccceeecC-cccCCC-CcHHHHhhhhhhhcC
Confidence 4456777755 999996 999999999998544
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.3e-23 Score=182.08 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~ 148 (189)
|..|+++|++|.|+.. .+|+++||+|+.||+++|+||||||||||||+|+||+. +++|+|..++.. .
T Consensus 1 M~~i~l~~v~K~yg~~----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSF----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCc----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 4579999999999873 16889999999999999999999999999999999999 999998554422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
.+...++|| ++.+|++ |||++|++|+++.++.+
T Consensus 74 ~R~iamVFQ-~yALyPh-mtV~~Niaf~Lk~~~~~ 106 (338)
T COG3839 74 KRGIAMVFQ-NYALYPH-MTVYENIAFGLKLRGVP 106 (338)
T ss_pred HCCEEEEeC-CccccCC-CcHHHHhhhhhhhCCCc
Confidence 234555665 5999996 99999999999988754
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.2e-22 Score=169.27 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=82.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---CCCCeE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KPPDVA 152 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~---~~~~~~ 152 (189)
.+++++++++.|+. ..+|+||||+|.+||+++|+|+||||||||+|+|+||.. |++|++...+. .+....
T Consensus 2 ~~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 46899999999987 357889999999999999999999999999999999999 99999744332 234456
Q ss_pred EEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
+|++|+ +.+++ |+||++|+.+++...+
T Consensus 75 ~~vFQ~-~~LlP-W~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 75 GYVFQE-DALLP-WLTVLDNVALGLELRG 101 (248)
T ss_pred EEEecc-Ccccc-hhhHHhhheehhhccc
Confidence 777765 77777 7999999999998765
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=3.2e-22 Score=166.75 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=79.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|++|+|+.. .+|+||||+|.+||+++|+||||||||||+|||.+|.. +++|.|...+..
T Consensus 1 ~mi~i~~l~K~fg~~----~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDK----EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCe----EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 479999999999873 46789999999999999999999999999999999999 999998654421
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..+++||+ |++|++ +||.+|+.++..
T Consensus 74 ~~R~~vGmVFQ~-fnLFPH-lTvleNv~lap~ 103 (240)
T COG1126 74 KLRRKVGMVFQQ-FNLFPH-LTVLENVTLAPV 103 (240)
T ss_pred HHHHhcCeeccc-cccccc-chHHHHHHhhhH
Confidence 13345677755 999996 999999999764
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.1e-21 Score=162.96 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=84.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC--C-------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--K------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~--~------- 147 (189)
+++++||+|.|+.....+.+|++|||+|++||+++|+|||||||||||++|.||.. |++|.+...+. .
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999764344678999999999999999999999999999999999999 99999643331 1
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
+++..++++|+ |++.+. +|+.||+.+++...+..
T Consensus 78 ~~~R~~~iGfvFQ~-~nLl~~-ltv~ENv~lpl~~~~~~ 114 (226)
T COG1136 78 AKLRRKKIGFVFQN-FNLLPD-LTVLENVELPLLIAGKS 114 (226)
T ss_pred HHHHHHhEEEECcc-CCCCCC-CCHHHHHHhHHHHcCCC
Confidence 34567888865 999885 99999999988766554
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.8e-21 Score=166.55 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=86.1
Q ss_pred eEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
||++++|+|.|... ...+.+|+||||+|++|||+||||.||+|||||+|+|.+|.. |++|+++..+.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999762 234779999999999999999999999999999999999999 999997654421
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
.++.++++|| .|+++.. .||++|++|++...+.+
T Consensus 78 Lr~~R~~IGMIFQ-hFnLLss-rTV~~NvA~PLeiag~~ 114 (339)
T COG1135 78 LRQLRQKIGMIFQ-HFNLLSS-RTVFENVAFPLELAGVP 114 (339)
T ss_pred HHHHHhhccEEec-ccccccc-chHHhhhhhhHhhcCCC
Confidence 2445677775 4998875 89999999999988864
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.83 E-value=6e-21 Score=156.61 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=85.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++||+|.|+.+ ..||+||||+|++||++-|+|+||||||||+|+|.+... |+.|.++.++.+
T Consensus 1 mI~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 58999999999875 258899999999999999999999999999999999999 999997554321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
.++.+++++|| |.+.+. +||+||+++++...|.+.
T Consensus 75 P~LRR~IGvVFQD-~rLL~~-~tvyeNVA~pL~v~G~~~ 111 (223)
T COG2884 75 PFLRRQIGVVFQD-FRLLPD-RTVYENVALPLRVIGKPP 111 (223)
T ss_pred chhhheeeeEeee-cccccc-chHhhhhhhhhhccCCCH
Confidence 24567888876 777774 999999999998887654
No 10
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.4e-20 Score=156.59 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC-CC------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK------ 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~-~~------ 147 (189)
+++|+++|+++.|+......++|++|||+|.+||++||+|+||||||||+|+|+||.+ |+.|+|...+ ..
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 3589999999999875333468899999999999999999999999999999999999 9999975443 21
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
..+..++||||.+.-..+.++|.+-+..+++..+
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 2345677888877666666889988888776533
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=3.9e-20 Score=157.69 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
||+++||+|.|++. .+|+|+||+|.+||++.++|+|||||||++|||.+|+. |++|.|...+.. .
T Consensus 1 MI~~~nvsk~y~~~----~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNK----KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCc----eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 58999999999863 47889999999999999999999999999999999999 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
++.++|+-|+ ..+|++ +||.+|+++...+.+++
T Consensus 74 Rr~IGYviQq-igLFPh-~Tv~eNIa~VP~L~~w~ 106 (309)
T COG1125 74 RRKIGYVIQQ-IGLFPH-LTVAENIATVPKLLGWD 106 (309)
T ss_pred HHhhhhhhhh-cccCCC-ccHHHHHHhhhhhcCCC
Confidence 3445666544 788885 99999999988776654
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=9.4e-20 Score=153.55 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=78.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.+|+++||++.|++. ..+|+||||+|++||+++|||+||||||||+|+|.|+.. ++.|+++.++..
T Consensus 2 ~~i~~~nl~k~yp~~---~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 2 MMIEVKNLSKTYPGG---HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE 75 (258)
T ss_pred ceEEEeeeeeecCCC---ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence 579999999999653 257889999999999999999999999999999999998 999998655432
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++|+ |++.+. ++|++|+..+.
T Consensus 76 lr~~r~~iGmIfQ~-~nLv~r-~sv~~NVl~gr 106 (258)
T COG3638 76 LRKLRRDIGMIFQQ-FNLVPR-LSVLENVLLGR 106 (258)
T ss_pred HHHHHHhceeEecc-CCcccc-cHHHHHHHhhh
Confidence 13456777765 888885 99999998875
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.7e-20 Score=159.36 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=81.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---C------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---K------ 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~---~------ 147 (189)
+|+++++++.|+.. .+++||||+|+.||.+||.||||||||||+|+|+||+. |+.|.|..++. +
T Consensus 2 ~i~i~~~~~~~~~~----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAF----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhcccc----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 58999999999874 46779999999999999999999999999999999999 99999865544 1
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
+.+.+++++|+ +.+|++ |||.+|++|+++.+
T Consensus 75 ~~R~VGfvFQ~-YALF~H-mtVa~NIAFGl~~~ 105 (345)
T COG1118 75 RDRKVGFVFQH-YALFPH-MTVADNIAFGLKVR 105 (345)
T ss_pred hhcceeEEEec-hhhccc-chHHhhhhhccccc
Confidence 23457788865 888885 99999999999765
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=2.2e-19 Score=151.66 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=79.6
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.++|++++|++.|++ +. .++||||+|++||+++|+|+||||||||+|+|.||++ |++|+++..+..
T Consensus 6 ~~~I~vr~v~~~fG~--~~--Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCC--EE--EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 578999999999987 33 4569999999999999999999999999999999999 999997554432
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
.++..+++||+ -.+|. .+||+||++|+++..
T Consensus 79 ~~~~ir~r~GvlFQ~-gALFs-sltV~eNVafplre~ 113 (263)
T COG1127 79 ELYEIRKRMGVLFQQ-GALFS-SLTVFENVAFPLREH 113 (263)
T ss_pred HHHHHHhheeEEeec-ccccc-ccchhHhhheehHhh
Confidence 12345777766 55665 499999999987543
No 15
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.1e-19 Score=156.51 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~ 148 (189)
+++|+++|+++.|++ . .+|+|+||++++||+++|+|+||||||||+|+|+|+++ +++|++...+.. .
T Consensus 4 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGS--N--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CcEEEEEeEEEEECC--e--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 568999999999975 2 36789999999999999999999999999999999998 999997543321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
++..++++|+ +.++++ +|+++|+.++++.++
T Consensus 77 ~r~ig~vfQ~-~~lfp~-~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 77 QRDICMVFQS-YALFPH-MSLGENVGYGLKMLG 107 (351)
T ss_pred HCCEEEEeCC-cccCCC-CCHHHHHHHHHhHcC
Confidence 2456777765 777775 999999999876543
No 16
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=164.01 Aligned_cols=150 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCcc------c----------c----C------c
Q 029679 18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKV------L----------C----S------Q 71 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~------~----------~----~------~ 71 (189)
...+.+|++|++-+.+. ..+++.+|.|+|++.++.+.|.... + + + .
T Consensus 236 adri~vl~~G~i~~~g~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (623)
T PRK10261 236 ADRVLVMYQGEAVETGS--------VEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTV 307 (623)
T ss_pred CCEEEEeeCCeecccCC--------HHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccc
Confidence 36788899988765332 3456788999999998876443200 0 0 0 0
Q ss_pred CCCCCeEEEeeeEEEcCccc-------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 72 QREIPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 72 ~~~~~~l~~~~l~~~~~~~~-------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
....++|+++|+++.|+... ....+|+||||+|++||+++|+|+||||||||+|+|+|+++ |++|++...
T Consensus 308 ~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~ 384 (623)
T PRK10261 308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFN 384 (623)
T ss_pred cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEEC
Confidence 01236899999999996210 11346889999999999999999999999999999999998 899997543
Q ss_pred CCC-----------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679 145 QVK-----------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 145 ~~~-----------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~ 179 (189)
+.. .++..++++|+.+ .+++ .+++.+|+.+.+..
T Consensus 385 g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~-~~tv~~~l~~~~~~ 430 (623)
T PRK10261 385 GQRIDTLSPGKLQALRRDIQFIFQDPYASLDP-RQTVGDSIMEPLRV 430 (623)
T ss_pred CEECCcCCHHHHHHhcCCeEEEecCchhhcCC-CCCHHHHHHHHHHH
Confidence 311 1234678887753 3444 48999999876543
No 17
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.78 E-value=7e-19 Score=156.18 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=80.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~ 148 (189)
+++|+++|+++.|++. .+|+|+||++.+||+++|+|+||||||||+|+|+|+++ |++|++...+.. .
T Consensus 2 ~~~l~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF----TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCe----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 4579999999999762 35789999999999999999999999999999999998 999997543321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
++..+|++|+ +.+|++ +++.+|+.++++.++
T Consensus 75 ~r~ig~v~Q~-~~lfp~-~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 75 KRDYGIVFQS-YALFPN-LTVADNIAYGLKNRG 105 (353)
T ss_pred HCCEEEEeCC-cccCCC-CcHHHHHHHHHHhcC
Confidence 3446777765 778875 999999999876543
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.3e-19 Score=156.22 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=79.0
Q ss_pred CeEEEeeeEEEc-CccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P 148 (189)
Q Consensus 76 ~~l~~~~l~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~ 148 (189)
.+|+++|+++.| +. + .+|+|+||++.+||+++|+|+||||||||+|+|+|+++ +++|++...+.. .
T Consensus 2 ~~l~i~~l~~~~~~~--~--~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--T--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred CEEEEEeEEEEeCCC--C--EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 479999999999 54 2 36789999999999999999999999999999999998 999997544321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.+..+|++|+ +.++++ +++.+|+.++++..+
T Consensus 75 ~r~ig~v~Q~-~~lfp~-~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 75 DRDIAMVFQN-YALYPH-MSVRENMAYGLKIRG 105 (356)
T ss_pred HCCEEEEeCC-ccccCC-CCHHHHHHhHHhhcC
Confidence 2456777865 677774 999999999876443
No 19
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=1e-18 Score=154.72 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++|+++.|+.......+|+||||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999632122357889999999999999999999999999999999998 999997543321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.++..++++|+ +.+++. +|+.+|+.+++...+
T Consensus 78 ~~~r~~Ig~v~Q~-~~l~~~-~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 78 TKARRQIGMIFQH-FNLLSS-RTVFGNVALPLELDN 111 (343)
T ss_pred HHHhcCEEEEECC-cccccc-CcHHHHHHHHHHHcC
Confidence 13356778865 667664 899999999876544
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=1.1e-18 Score=151.32 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=81.7
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~ 148 (189)
.+++++|++|.|+.. ..+|+||||+|++|+++||+|+||||||||+|+|+|++. |++|++...+.. .
T Consensus 3 ~~i~~~~l~k~~~~~---~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 3 EVIEVRNLTKKYGGD---KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPAKV 76 (293)
T ss_pred ceeeecceEEEeCCC---CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHHHH
Confidence 468999999999831 257889999999999999999999999999999999999 999997544322 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
++..+|++++ ..+++ .+|+.||+.+....++.+
T Consensus 77 ~~~igy~~~~-~~~~~-~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 77 RRRIGYVPQE-PSLYP-ELTVRENLEFFARLYGLS 109 (293)
T ss_pred HhheEEEccC-CCCCc-cccHHHHHHHHHHHhCCC
Confidence 3456888866 44555 599999999998887754
No 21
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=6.3e-19 Score=147.90 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=79.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|++..|+. ..+|++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|...+.+
T Consensus 2 ~mL~v~~l~~~YG~----~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGK----IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeecccc----eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 68999999999987 367889999999999999999999999999999999998 889997544432
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
.+.-..++| ++...|+. |||.||+..+....
T Consensus 75 r~r~Gi~~VP-egR~iF~~-LTVeENL~~g~~~~ 106 (237)
T COG0410 75 RARLGIAYVP-EGRRIFPR-LTVEENLLLGAYAR 106 (237)
T ss_pred HHhCCeEeCc-ccccchhh-CcHHHHHhhhhhcc
Confidence 122346677 46888885 99999999876443
No 22
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.77 E-value=1.1e-18 Score=156.12 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=80.5
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
.+++|+++|+++.|+.. .+|+++||++.+||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 11 ~~~~L~l~~l~~~~~~~----~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCe----EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 45689999999999752 35779999999999999999999999999999999998 999997543321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.++..+|++|+ +.++++ +++.+|+.++++..+
T Consensus 84 ~~r~ig~vfQ~-~~lfp~-ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 84 ENRHVNTVFQS-YALFPH-MTVFENVAFGLRMQK 115 (375)
T ss_pred HHCCEEEEecC-cccCCC-CCHHHHHHHHHhhcC
Confidence 12446777765 777875 999999999876443
No 23
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1e-18 Score=144.61 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCe
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV 151 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~ 151 (189)
|+++.+++++..|++. ...+++|||++|..||.+.++||||||||||+++++|+.. |+.|++..++.. +...
T Consensus 1 M~~l~~~~~sl~y~g~--~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGK--PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCc--chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 4678999999999873 3457889999999999999999999999999999999999 999998554431 2234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
.++++|+ ..+++ |+++.+|++|+++.+|++.
T Consensus 76 rgvVFQ~-~~LlP-Wl~~~dNvafgL~l~Gi~k 106 (259)
T COG4525 76 RGVVFQN-EALLP-WLNVIDNVAFGLQLRGIEK 106 (259)
T ss_pred ceeEecc-Cccch-hhHHHHHHHHHHHhcCCCH
Confidence 5677765 55555 7999999999999998764
No 24
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.5e-18 Score=153.97 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=80.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
..++|+++|+++.|++. .+|+++||+|++||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 16 ~~~~l~l~~v~~~~~~~----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQ----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 35689999999999752 36789999999999999999999999999999999998 999987543321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.++..+|++|+ +.+|++ +++.+|+.++++..+
T Consensus 89 ~~r~ig~vfQ~-~~lfp~-ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 89 YQRPINMMFQS-YALFPH-MTVEQNIAFGLKQDK 120 (377)
T ss_pred HHCCEEEEeCC-CccCCC-CCHHHHHHHHHHHcC
Confidence 23456777865 677874 999999999876543
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.76 E-value=4.7e-18 Score=147.90 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.++|+++|++|.|++ ..+|+||||+|++||++||+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 5 ~~~i~i~~l~k~~~~----~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGD----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECC----eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 358999999999975 247889999999999999999999999999999999998 999987544322
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.++..+|++|+ ..+++ .+|+.+|+.+....++
T Consensus 78 ~~~~ig~v~q~-~~~~~-~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 78 ARQRVGVVPQF-DNLDP-DFTVRENLLVFGRYFG 109 (306)
T ss_pred HHhcEEEEecc-CcCCC-CCcHHHHHHHHHHHcC
Confidence 13456788866 45554 4899999987655544
No 26
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=4.6e-19 Score=149.69 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=77.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C-C
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P-P 149 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~-~ 149 (189)
.+++++++++|+|++ +.||+||||++++||+++||||||||||||+++|+|+++ |++|++...+.. + .
T Consensus 2 ~~lL~v~~l~k~FGG----l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 2 TPLLEVRGLSKRFGG----LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred CceeeeccceeecCC----EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHH
Confidence 367999999999998 468999999999999999999999999999999999999 999997554432 1 1
Q ss_pred C--eEEEE-ecCCCCCCCCccChhhhHHHHHH
Q 029679 150 D--VATVL-PMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 150 ~--~~~vv-~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
. ..++. -+|...+|+. |||.||+..+..
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~-lTVlENv~va~~ 105 (250)
T COG0411 75 RIARLGIARTFQITRLFPG-LTVLENVAVGAH 105 (250)
T ss_pred HHHhccceeecccccccCC-CcHHHHHHHHhh
Confidence 1 11222 2344677875 999999999864
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.5e-18 Score=142.60 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=79.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCC--C---
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQV--K--- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~--~--- 147 (189)
.+.++++|++++|+.. .+|+|||++|++++++||+||||||||||+|++..+...+ ..-+|.+...+. .
T Consensus 5 ~~~~~~~~l~~yYg~~----~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 5 IPAIEVRDLNLYYGDK----HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred cceeEecceeEEECch----hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 4579999999999863 5788999999999999999999999999999999998621 122355432221 1
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
.++..++++|. .++|+ +++++|++++.++.|...
T Consensus 81 ~d~~~lRr~vGMVFQk-PnPFp--~SIydNVayG~r~~g~~~ 119 (253)
T COG1117 81 VDVVELRRRVGMVFQK-PNPFP--MSIYDNVAYGLRLHGIKD 119 (253)
T ss_pred CCHHHHHHHheeeccC-CCCCC--chHHHHHHHhHHhhccch
Confidence 13445666654 78887 899999999999887653
No 28
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.3e-18 Score=150.01 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=77.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CC
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PP 149 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~ 149 (189)
..|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+.. ..
T Consensus 2 ~~l~i~~l~~~~~~--~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 2 ASVTLRNVTKAYGD--V--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred CEEEEEEEEEEeCC--e--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence 46999999999975 2 35789999999999999999999999999999999998 999997543311 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
+..+|++|+ +.+++. +++.+|+.+.+...
T Consensus 75 ~~i~~v~Q~-~~l~~~-~tv~eni~~~~~~~ 103 (369)
T PRK11000 75 RGVGMVFQS-YALYPH-LSVAENMSFGLKLA 103 (369)
T ss_pred CCEEEEeCC-cccCCC-CCHHHHHHhHHhhc
Confidence 346777865 566664 89999999876543
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.74 E-value=3.9e-18 Score=145.78 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
+|+++|+++.|++ + ..++|+||++++|++++|+||||||||||+|+|+|+++ |.+|.+...+.. .
T Consensus 2 ~L~~~~ls~~y~~--~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGG--K--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECC--e--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 6899999999986 3 35679999999999999999999999999999999999 999997554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...|+||.....+ .++|+|-+.++..
T Consensus 75 Ak~ia~vpQ~~~~~~--~~tV~d~V~~GR~ 102 (258)
T COG1120 75 AKKLAYVPQSPSAPF--GLTVYELVLLGRY 102 (258)
T ss_pred hhhEEEeccCCCCCC--CcEEeehHhhcCC
Confidence 345678887743333 4889988877653
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.74 E-value=6.5e-18 Score=150.58 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=78.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc--eeeccCCCC------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVK------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~--G~i~~~~~~------~ 148 (189)
.|+++|+++.|+. . .+|+|+||+|.+||+++|+|+||||||||+|+|+|+++ |++ |++...+.. .
T Consensus 5 ~l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA--N--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECC--e--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 3899999999975 2 36789999999999999999999999999999999998 888 997443321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.+..++++|+ +.++++ +|+++|+.++++..+
T Consensus 78 ~r~ig~vfQ~-~~l~p~-~tv~enl~~~l~~~~ 108 (362)
T TIGR03258 78 KRGLALLFQN-YALFPH-LKVEDNVAFGLRAQK 108 (362)
T ss_pred HCCEEEEECC-cccCCC-CcHHHHHHHHHHHcC
Confidence 2446777765 677774 999999999876544
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.74 E-value=7.1e-18 Score=138.54 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++|+++.|++..+ .+++++||++.+||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQ--PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCCe--eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 4899999999964211 35779999999999999999999999999999999998 899987443321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+ ..++. .+++.+|+.+....
T Consensus 76 ~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 76 PFLRRHIGMVFQD-HRLLS-DRTVYDNVAFPLRI 107 (216)
T ss_pred HHHHHhceEEecC-ccccc-cccHHHHHHHHHHh
Confidence 11345677766 44554 38999999886543
No 32
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=138.42 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=75.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C---
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P--- 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~--- 148 (189)
++|+++|+++.|+.......+++++||+|++||+++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 579999999999642111236789999999999999999999999999999999998 899997544321 0
Q ss_pred -----CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 -----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
++..++++|+ ..+++ .+++.+|+.+...
T Consensus 81 ~~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~ 113 (233)
T PRK11629 81 KAELRNQKLGFIYQF-HHLLP-DFTALENVAMPLL 113 (233)
T ss_pred HHHHHhccEEEEecC-cccCC-CCCHHHHHHHHHH
Confidence 1345777766 44554 3799999987643
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.74 E-value=9.9e-18 Score=148.17 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
.+++|+++|++|.|++. .+|+||||+|.+|+++||+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 38 ~~~~i~i~nl~k~y~~~----~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 38 STVAIDLAGVSKSYGDK----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR 110 (340)
T ss_pred CceeEEEEEEEEEECCE----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence 45689999999999762 46889999999999999999999999999999999998 999997543321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.+...++++|+ ..++. .+++.+|+.+....++
T Consensus 111 ~~~~~ig~v~q~-~~~~~-~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 111 LARARIGVVPQF-DNLDL-EFTVRENLLVFGRYFG 143 (340)
T ss_pred HHhccEEEEeCC-ccCCC-CCcHHHHHHHHHHHcC
Confidence 13456778865 45554 4899999987544433
No 34
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1e-17 Score=142.85 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=76.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-----CCC
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPP 149 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-----~~~ 149 (189)
+++|+++|+++.|+.. .+|+||||+|.+|++++|+||||||||||+|+|+||++ |.+|++...+. ..+
T Consensus 2 ~~~i~v~nl~v~y~~~----~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCE----eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 4689999999999862 36889999999999999999999999999999999998 99999754332 123
Q ss_pred CeEEEEecCC-CCCCCCccChhhhHHHHH
Q 029679 150 DVATVLPMDG-FHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 150 ~~~~vv~~~~-~~l~~~~ltv~enl~~~~ 177 (189)
..++|+||.. ++...+ .||+|-+.++.
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~ 102 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGR 102 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccC
Confidence 5688999864 333333 79998877763
No 35
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.74 E-value=1.8e-17 Score=137.17 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P---- 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~---- 148 (189)
+++|+++|+++.|+.......+++++||++.+||+++|+|+||||||||+++|+|+++ |++|.+...+.. .
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence 3589999999999752111235779999999999999999999999999999999998 899987533311 0
Q ss_pred ------CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ------~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
....++++|+ ..++. .+++.+|+.+..
T Consensus 81 ~~~~~~~~~i~~~~q~-~~l~~-~~tv~~~l~~~~ 113 (228)
T PRK10584 81 ARAKLRAKHVGFVFQS-FMLIP-TLNALENVELPA 113 (228)
T ss_pred HHHHHHhheEEEEEcc-cccCC-CcCHHHHHHHHH
Confidence 1346677765 45555 379999998754
No 36
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.5e-18 Score=142.51 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=80.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
||++.+++|+|+. .+.+++||||++++||++||.|+||+||||++|+|++|+. |++|.+...+.+ .+
T Consensus 1 Ml~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 6899999999987 3468999999999999999999999999999999999998 999997544322 23
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
+.+++++ ....++. .||+.||+.+..++.++.
T Consensus 75 r~IGVl~-~e~glY~-RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 75 RKIGVLF-GERGLYA-RLTARENLKYFARLNGLS 106 (245)
T ss_pred hhcceec-CCcChhh-hhhHHHHHHHHHHHhhhh
Confidence 4456666 3344554 599999999988777654
No 37
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-17 Score=147.34 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=76.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++|+++.|+.......+++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999731111246789999999999999999999999999999999998 899997443311
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.++..++++|+ ..++. .+++.+|+.+.....+
T Consensus 78 ~~~~~~ig~v~q~-~~l~~-~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 78 RKARRQIGMIFQH-FNLLS-SRTVFDNVALPLELAG 111 (343)
T ss_pred HHHhcCEEEEeCC-CccCC-CCcHHHHHHHHHHHcC
Confidence 02346777865 45555 3899999998765443
No 38
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=1.3e-17 Score=146.94 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=78.8
Q ss_pred CCCeEEEeeeEEEcCccc---------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 74 EIPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
..++|+++||++.|+... ..+.+|+||||+|.+||+++|+|+||||||||+++|+|++. +++|++...
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEEC
Confidence 457899999999996311 12457899999999999999999999999999999999998 889987443
Q ss_pred CCC-----------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679 145 QVK-----------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 145 ~~~-----------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~ 179 (189)
+.. .++..+|++|+.. .+++ .+++.+|+.+.+..
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p-~~tv~~~i~~~l~~ 127 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP-RMTIGEIIAEPLRT 127 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCC-CCCHHHHHHHHHHH
Confidence 321 1234678888754 3444 48999999886543
No 39
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.73 E-value=1.3e-17 Score=137.47 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=73.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|+.......+++|+||++++||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999652111135779999999999999999999999999999999998 899987443311
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..+|++|+....+...+++.+|+.+...
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~ 110 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLR 110 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence 1234667777643223334899999987644
No 40
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.73 E-value=1.7e-17 Score=136.23 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=74.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
+|+++|+++.|+...+...+++++||++++||+++|+|+||||||||+++|+|+++ |++|++...+.. .+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999753111135779999999999999999999999999999999998 899987443311 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+..++++|+ ..++. .+++.+|+.+....
T Consensus 78 ~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~ 105 (218)
T cd03266 78 RRLGFVSDS-TGLYD-RLTARENLEYFAGL 105 (218)
T ss_pred hhEEEecCC-cccCc-CCCHHHHHHHHHHH
Confidence 346677766 35554 47999999876543
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.73 E-value=9.1e-18 Score=149.08 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=76.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~ 150 (189)
+|+++|+++.|+. + .+|+|+||+|.+||+++|+|+||||||||+|+|+|+++ +++|++...+.. .++
T Consensus 2 ~L~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR--T--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCC--e--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 5899999999975 2 36789999999999999999999999999999999998 999997443321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..+|++|+ +.+++. +++.+|+.+++..
T Consensus 75 ~i~~v~Q~-~~l~p~-~tv~eni~~~~~~ 101 (353)
T PRK10851 75 KVGFVFQH-YALFRH-MTVFDNIAFGLTV 101 (353)
T ss_pred CEEEEecC-cccCCC-CcHHHHHHhhhhh
Confidence 46777865 677774 9999999987653
No 42
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=5.2e-18 Score=155.96 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~----- 148 (189)
.+++++++|++|+|++ +.||++|||++++||+++|+|+||+|||||+|+|+|.++ |++|+++..+...
T Consensus 5 ~~~ll~~~~i~K~Fgg----V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 5 TPPLLELRGISKSFGG----VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSP 77 (500)
T ss_pred ccceeeeecceEEcCC----ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCH
Confidence 4568999999999987 578999999999999999999999999999999999999 9999985544321
Q ss_pred ----CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 ----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..-+.+++| ..++.+. +||.+|+.++...
T Consensus 78 ~~A~~~GI~~V~Q-El~L~p~-LsVaeNifLgre~ 110 (500)
T COG1129 78 RDALAAGIATVHQ-ELSLVPN-LSVAENIFLGREP 110 (500)
T ss_pred HHHHhCCcEEEee-chhccCC-ccHHHHhhccccc
Confidence 122345554 4888885 9999999876643
No 43
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=145.54 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=75.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK------ 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~------ 147 (189)
|.+|+++|+++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|++++ -.+++|++...+..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 34799999999997532224578999999999999999999999999999999999862 11367876433321
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+.+..++++|+.+..+...+++.+++...+.
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~ 117 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIK 117 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence 1124678888755433335788877766543
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.73 E-value=2.4e-17 Score=142.86 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=74.7
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~ 148 (189)
.+|+++|+++.|++ + .+|++|||+|++|++++|+|+||||||||+|+|+|+++ |++|++...+.. .
T Consensus 3 ~~i~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--K--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA 75 (303)
T ss_pred cEEEEEeEEEEeCC--e--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence 47999999999975 2 36789999999999999999999999999999999998 899997543321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...++++|+ ..+++ .+++.+|+.+...
T Consensus 76 ~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~ 103 (303)
T TIGR01288 76 RVAIGVVPQF-DNLDP-EFTVRENLLVFGR 103 (303)
T ss_pred hhcEEEEecc-ccCCc-CCcHHHHHHHHHH
Confidence 3346777865 44554 4899999986543
No 45
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=5.1e-18 Score=138.01 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=85.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++++++..+.....+..|++|+|.|.+||.++|||+||||||||+-+++||.. +++|.+...+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999876566778999999999999999999999999999999999998 999997433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
+.+..+++| |+|++.++ |+..||++.++.+.|
T Consensus 83 A~~R~~~vGfVF-QSF~Lip~-ltAlENV~lPleL~g 117 (228)
T COG4181 83 AALRARHVGFVF-QSFHLIPN-LTALENVALPLELRG 117 (228)
T ss_pred HHhhccceeEEE-Eeeecccc-chhhhhccchhhhcC
Confidence 334567777 46999986 999999999998887
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.73 E-value=1.7e-17 Score=136.33 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=73.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|+.......+++++||++++|++++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4789999999652101236789999999999999999999999999999999998 899987433211
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
.++..++++|+ ..++. .+++.+|+.+.....
T Consensus 78 ~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~~ 110 (218)
T cd03255 78 AFRRRHIGFVFQS-FNLLP-DLTALENVELPLLLA 110 (218)
T ss_pred HHHhhcEEEEeec-cccCC-CCcHHHHHHHHHhhc
Confidence 12345677765 34444 379999998865433
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.4e-17 Score=135.90 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
|+++|+++.|++ + .+++|+||++.+||+++|+|+||||||||+++|+|+++ |++|++...+.. .++
T Consensus 1 i~~~~~~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGD--F--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECC--E--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 578999999975 2 35779999999999999999999999999999999998 899987433311 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
..++++|+ ..+++ .+++.+|+.+.....+
T Consensus 74 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 74 RIGIVFQD-LSVDD-ELTGWENLYIHARLYG 102 (220)
T ss_pred cEEEecCC-ccccc-cCcHHHHHHHHHHHcC
Confidence 45677766 34444 4899999988655433
No 48
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.72 E-value=2.6e-17 Score=144.80 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC---ceeeccCCCC---
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVK--- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~---~G~i~~~~~~--- 147 (189)
.+++|+++|+++.|+.....+.+|+||||+|.+||+++|+|+||||||||+++|+|+++ +. +|++...+..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45689999999999642223457899999999999999999999999999999999998 54 8887443321
Q ss_pred ---------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+.+..++++|+....+...+++.+|+.+...
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~ 125 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLM 125 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHH
Confidence 1235678888754333335888888876554
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.8e-17 Score=134.43 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=72.9
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeEE
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVAT 153 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~~ 153 (189)
|+++|+++.|++ + .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .++..+
T Consensus 1 l~~~~l~~~~~~--~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR--V--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECC--E--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 478999999975 2 25679999999999999999999999999999999998 899997544322 133456
Q ss_pred EEecCCCCCCCCccChhhhHHHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+++|+ ..++. .+++.+|+.+....
T Consensus 74 ~~~q~-~~~~~-~~tv~e~l~~~~~~ 97 (210)
T cd03269 74 YLPEE-RGLYP-KMKVIDQLVYLAQL 97 (210)
T ss_pred EeccC-CcCCc-CCcHHHHHHHHHHH
Confidence 77765 44454 37999999876543
No 50
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.5e-17 Score=138.43 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=72.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGG--R--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 478999999975 2 35779999999999999999999999999999999998 899987433211
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..+++ .+++.+|+.+...
T Consensus 74 ~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~~ 103 (235)
T cd03261 74 RLRRRMGMLFQS-GALFD-SLTVFENVAFPLR 103 (235)
T ss_pred HHhcceEEEccC-cccCC-CCcHHHHHHHHHh
Confidence 12345677765 45555 4899999987643
No 51
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.3e-17 Score=144.98 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=77.0
Q ss_pred CCeEEEeeeEEEcCccc------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-
Q 029679 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~- 147 (189)
+++|+++|+++.|+... ..+.+|+||||+|.+||++||+|+||||||||+++|+|+++ +++|++...+..
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 36899999999996311 12467899999999999999999999999999999999998 888987443311
Q ss_pred ----------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+....+...+++.+++.+.+.
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~ 120 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLL 120 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHH
Confidence 1234678888754333335889888876554
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.1e-17 Score=135.27 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=73.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEE
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATV 154 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~v 154 (189)
|+++|+++.|+.......+++++||+|++|++++|+|+||||||||+|+|+|+++ |++|++...+.. .+...++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4789999999752111246789999999999999999999999999999999998 899997543321 2334567
Q ss_pred EecCCCCCCCCccChhhhHHHHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
++|+ ..++. .+++.+|+.+....
T Consensus 78 v~q~-~~~~~-~~tv~e~l~~~~~~ 100 (220)
T cd03293 78 VFQQ-DALLP-WLTVLDNVALGLEL 100 (220)
T ss_pred Eecc-ccccc-CCCHHHHHHHHHHH
Confidence 7765 34444 38999999876543
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.4e-17 Score=136.78 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P------ 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~------ 148 (189)
||+++|+++.|+.......+++++||+|++||+++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999752101135779999999999999999999999999999999998 889987433221 0
Q ss_pred ---CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 ---~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
++..++++|+ ..+++ .+++.+|+.+....
T Consensus 78 ~~~~~~i~~~~q~-~~~~~-~~t~~e~l~~~~~~ 109 (233)
T cd03258 78 RKARRRIGMIFQH-FNLLS-SRTVFENVALPLEI 109 (233)
T ss_pred HHHHhheEEEccC-cccCC-CCcHHHHHHHHHHH
Confidence 2345677766 44554 38999999876543
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.72 E-value=2.6e-17 Score=135.31 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=73.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
|+++|+++.|+...+ .+++|+||++++||+++|+|+||||||||+++|+|+++ |++|++...+.. .++
T Consensus 1 l~~~~l~~~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCc--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence 578999999965211 35789999999999999999999999999999999998 899987443321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
..++++|+ ..++. .+++.+|+.+.....
T Consensus 76 ~i~~v~q~-~~~~~-~~tv~~~l~~~~~~~ 103 (220)
T cd03263 76 SLGYCPQF-DALFD-ELTVREHLRFYARLK 103 (220)
T ss_pred hEEEecCc-CCccc-cCCHHHHHHHHHHHc
Confidence 45677765 44444 389999998765443
No 55
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=8.2e-18 Score=153.30 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
++.+++++++|.|++ +.|+++|||+|++|||.||+|+||+|||||+++|.|++. |++|.++..+..
T Consensus 2 ~~~l~~~~itK~f~~----~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPG----VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCC----EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 357999999999986 578999999999999999999999999999999999999 999998554422
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+.-++++. |.|.+++. +||.||+.++..
T Consensus 75 dA~~~GIGMVh-QHF~Lv~~-lTV~ENiiLg~e 105 (501)
T COG3845 75 DAIRLGIGMVH-QHFMLVPT-LTVAENIILGLE 105 (501)
T ss_pred HHHHcCCcEEe-eccccccc-cchhhhhhhcCc
Confidence 112345565 45899986 999999998764
No 56
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.72 E-value=3.7e-17 Score=134.50 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=73.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|+.......+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 47899999999642111235789999999999999999999999999999999998 899987543311
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
++...++++|+ ..++. .+++.+|+.+...
T Consensus 78 ~~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~~ 109 (221)
T TIGR02211 78 AKLRNKKLGFIYQF-HHLLP-DFTALENVAMPLL 109 (221)
T ss_pred HHHHHhcEEEEecc-cccCC-CCcHHHHHHHHHH
Confidence 01346777765 44454 3799999987543
No 57
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.72 E-value=3.6e-17 Score=133.58 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=73.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC------CCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------~~~ 151 (189)
|+++|+++.|++ + .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+... ++.
T Consensus 1 l~~~~l~~~~~~--~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK--K--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECC--e--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 478999999965 2 36779999999999999999999999999999999998 8999875443221 234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..+++|+ ..+++ .+++.+|+.+....
T Consensus 74 i~~~~q~-~~~~~-~~tv~e~l~~~~~~ 99 (208)
T cd03268 74 IGALIEA-PGFYP-NLTARENLRLLARL 99 (208)
T ss_pred EEEecCC-CccCc-cCcHHHHHHHHHHh
Confidence 5677765 44554 48999999886543
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.2e-17 Score=138.16 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=73.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEE
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVAT 153 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~ 153 (189)
||+++|+++.|++ + ..++|+||+|++|++++|+|+||||||||+++|+|+++ |++|++...+.. .....+
T Consensus 1 ml~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGG--K--PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCC--e--eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 4899999999975 2 35779999999999999999999999999999999998 899987443321 122356
Q ss_pred EEecCCCCCCCCccChhhhHHHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+++|+ ..+++ .+++.+|+.+....
T Consensus 74 ~v~q~-~~~~~-~~tv~e~l~~~~~~ 97 (255)
T PRK11248 74 VVFQN-EGLLP-WRNVQDNVAFGLQL 97 (255)
T ss_pred EEeCC-CccCC-CCcHHHHHHhHHHH
Confidence 77765 44554 37999999876543
No 59
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=9.4e-18 Score=142.50 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=84.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc-CCCC---CCCeE
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---PPDVA 152 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~-~~~~---~~~~~ 152 (189)
+|++++|+|+|++. .||+|+||.+++|+++|++|+||+||||++|+|+|++. +++|.|.. +... ..+.+
T Consensus 2 ~L~ie~vtK~Fg~k----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCce----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 58999999999873 57889999999999999999999999999999999999 99999844 3322 24567
Q ss_pred EEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
+|.|.. ..+++. ++|.+.+.|...+.|++.
T Consensus 75 GyLPEE-RGLy~k-~tv~dql~yla~LkGm~~ 104 (300)
T COG4152 75 GYLPEE-RGLYPK-MTVEDQLKYLAELKGMPK 104 (300)
T ss_pred ccChhh-hccCcc-CcHHHHHHHHHHhcCCcH
Confidence 888854 677775 999999999999988864
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.8e-17 Score=136.42 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=73.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~ 150 (189)
+|+++|+++.|++ + .+++||||++.+|++++|+|+||||||||+|+|+|+++ +++|++...+.. .+.
T Consensus 2 ~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD--F--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECC--E--EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 5899999999975 2 35779999999999999999999999999999999998 899987443311 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
..++++|+ ..++. .+++.+|+.+...
T Consensus 75 ~i~~v~q~-~~~~~-~~tv~e~l~~~~~ 100 (239)
T cd03296 75 NVGFVFQH-YALFR-HMTVFDNVAFGLR 100 (239)
T ss_pred ceEEEecC-CcccC-CCCHHHHHhhhhh
Confidence 45677765 44454 3899999987654
No 61
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.6e-17 Score=143.67 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK------ 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~------ 147 (189)
|++|+++|+++.|+.......+|+||||+|.+||+++|+|+||||||||+++|+|++++ ..+++|++...+..
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 35899999999995321224578899999999999999999999999999999999862 12477886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+....+...+++.+|+.+.
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~ 115 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN 115 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence 12346788877543333357888888764
No 62
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.71 E-value=3.5e-17 Score=134.10 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=72.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++|+++.|+.. + .+++|+||+|++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~-~--~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 1 MIEFHNVSKAYPGG-V--AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred CEEEEeeeEEeCCC-c--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999521 2 35779999999999999999999999999999999998 889987443311
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. .+++.+|+.+...
T Consensus 75 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~ 105 (214)
T TIGR02673 75 PLLRRRIGVVFQD-FRLLP-DRTVYENVALPLE 105 (214)
T ss_pred HHHHhheEEEecC-hhhcc-CCcHHHHHHHHHH
Confidence 12345677765 44554 3899999988654
No 63
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.71 E-value=2.6e-17 Score=135.31 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=72.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P 148 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~ 148 (189)
|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ |++|++...+.. .
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGK--S--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCC--e--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 578999999975 2 35779999999999999999999999999999999998 899987433211 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
++..++++|+ ..+++ .+++.+|+.+...
T Consensus 74 ~~~i~~~~q~-~~~~~-~~t~~~~l~~~~~ 101 (222)
T cd03224 74 RAGIGYVPEG-RRIFP-ELTVEENLLLGAY 101 (222)
T ss_pred hcCeEEeccc-cccCC-CCcHHHHHHHHhh
Confidence 2335677765 45555 4899999987654
No 64
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.71 E-value=3.9e-17 Score=139.15 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
+++|+++|+++.|+. + .+++||||+|++|++++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 5 ~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--R--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 468999999999975 2 35779999999999999999999999999999999998 889987433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..+++ .+++.+|+.+...
T Consensus 78 ~~~~~~~~i~~v~q~-~~~~~-~~tv~enl~~~~~ 110 (269)
T PRK11831 78 RLYTVRKRMSMLFQS-GALFT-DMNVFDNVAYPLR 110 (269)
T ss_pred hHHHHhhcEEEEecc-cccCC-CCCHHHHHHHHHH
Confidence 12345677765 45555 3799999987643
No 65
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.7e-17 Score=134.00 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|+. + .+++|+||++.+||+++|+|+||||||||+++|+|+++ |++|++...+.. .+..
T Consensus 1 l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS--V--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCC--e--eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 478999999975 2 35779999999999999999999999999999999998 899987433211 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++++|+ ...+. .+++.+|+.+...
T Consensus 74 i~~v~q~-~~~~~-~~tv~~~l~~~~~ 98 (213)
T cd03259 74 IGMVFQD-YALFP-HLTVAENIAFGLK 98 (213)
T ss_pred EEEEcCc-hhhcc-CCcHHHHHHhHHH
Confidence 5677765 44554 3799999987653
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.71 E-value=4.6e-17 Score=141.07 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=76.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
+++++|+++.|++ . .+|+|+||++++||++||+|+||||||||+|+|+|+++ |++|++...+.. .+
T Consensus 2 ~l~~~~l~~~~~~--~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGT--Q--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECC--E--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 4899999999975 2 36789999999999999999999999999999999998 999997443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
+..++++++ ..+++ .+++.+|+.+.....+
T Consensus 75 ~~ig~~~q~-~~l~~-~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 75 RNIGYLPEH-NPLYL-DMYVREYLQFIAGIYG 104 (301)
T ss_pred hceEEecCC-CCCCC-CCcHHHHHHHHHHHcC
Confidence 346777765 45555 4899999987665544
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.71 E-value=3.8e-17 Score=136.98 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=73.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++||||++.+|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 2 SAIEVKNLVKKFHG--Q--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred CcEEEeceEEEECC--e--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence 47999999999975 2 35779999999999999999999999999999999998 889987433210
Q ss_pred --------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..+++ .+++.+|+.+..
T Consensus 75 ~~~~~~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~ 110 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQN-FNLFP-HRTVLENIIEGP 110 (250)
T ss_pred chhhHHHHhhhhEEEEecC-cccCC-CCCHHHHHHHHH
Confidence 12345677765 44554 379999998753
No 68
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=5e-17 Score=132.89 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=72.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
+|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|++...+.. .+
T Consensus 1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDE--R--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECC--E--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 5899999999975 2 35779999999999999999999999999999999998 899987543321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+..++++++ ..+++ .+++.+|+.+....
T Consensus 74 ~~~~~~~~~-~~~~~-~~tv~e~l~~~~~~ 101 (204)
T PRK13538 74 QDLLYLGHQ-PGIKT-ELTALENLRFYQRL 101 (204)
T ss_pred hheEEeCCc-cccCc-CCcHHHHHHHHHHh
Confidence 234566654 44444 47999999876543
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.71 E-value=4.1e-17 Score=135.19 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=72.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P 148 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~ 148 (189)
|+++|+++.|++ + .+++|+||++.+|++++|+|+||||||||+|+|+|+++ |++|++...+.. .
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGK--R--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCC--E--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 478999999975 2 35779999999999999999999999999999999998 899987443321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...++++|+ ..+++ .+++.+|+.+...
T Consensus 74 ~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~ 101 (232)
T cd03218 74 RLGIGYLPQE-ASIFR-KLTVEENILAVLE 101 (232)
T ss_pred hccEEEecCC-ccccc-cCcHHHHHHHHHH
Confidence 1235677765 44555 3899999987654
No 70
>PRK10908 cell division protein FtsE; Provisional
Probab=99.71 E-value=5.2e-17 Score=134.05 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|... + ..++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 1 MIRFEHVSKAYLGG-R--QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNREV 74 (222)
T ss_pred CEEEEeeEEEecCC-C--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhHH
Confidence 48899999999421 2 35779999999999999999999999999999999998 899987443311
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++...|++|+ ..++. .+++.+|+.+....
T Consensus 75 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~~ 106 (222)
T PRK10908 75 PFLRRQIGMIFQD-HHLLM-DRTVYDNVAIPLII 106 (222)
T ss_pred HHHHhheEEEecC-ccccc-cccHHHHHHhHHHh
Confidence 12345677765 34444 37999999876543
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.3e-17 Score=139.77 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=76.1
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999996421 1236789999999999999999999999999999999998 999987443321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
.++..++++|+....+. .+++.+|+.+.....
T Consensus 79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~ 110 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFV-GATVEDDVAFGLENK 110 (279)
T ss_pred HHhhceEEEcChHHhcc-cccHHHHHHhhHHhC
Confidence 12345777876333444 379999998865443
No 72
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.1e-17 Score=140.02 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=75.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+... ..+++++||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 5799999999996421 236789999999999999999999999999999999998 899987443321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..+|++|+....+. .+++.+|+.+....
T Consensus 79 ~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~ 109 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFV-GATVQDDVAFGLEN 109 (279)
T ss_pred HhhheEEEEeCHHHhcc-cccHHHHHhhhHhh
Confidence 12346778876322343 37999999876543
No 73
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=8.6e-17 Score=132.51 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=74.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CC
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PP 149 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~ 149 (189)
.++|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. ..
T Consensus 9 ~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNE--E--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCC--c--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 468999999999975 2 25779999999999999999999999999999999998 899987444321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+..+++++. ..++. .+++.+|+.+...
T Consensus 82 ~~i~~~~q~-~~~~~-~~t~~e~l~~~~~ 108 (214)
T PRK13543 82 RFMAYLGHL-PGLKA-DLSTLENLHFLCG 108 (214)
T ss_pred hceEEeecC-ccccc-CCcHHHHHHHHHH
Confidence 235666654 44444 3799999877654
No 74
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4.5e-17 Score=135.69 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
+++|+++|+++.|+. + .+++++||+|++||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 3 ~~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGK--I--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCC--c--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 468999999999975 2 35779999999999999999999999999999999998 899987433321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++++ ...++ .+++.+|+.+..
T Consensus 76 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~ 105 (237)
T PRK11614 76 KIMREAVAIVPEG-RRVFS-RMTVEENLAMGG 105 (237)
T ss_pred HHHHhCEEEeccC-cccCC-CCcHHHHHHHhh
Confidence 12345677765 44554 379999998754
No 75
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=5.8e-17 Score=132.93 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=71.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV 151 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~ 151 (189)
+|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+..
T Consensus 2 ~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGG--R--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECC--e--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 6899999999975 2 35789999999999999999999999999999999998 899987443321 1223
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++++++ ..++. .+++.+|+.+...
T Consensus 75 ~~~~~~~-~~~~~-~~tv~~~l~~~~~ 99 (207)
T PRK13539 75 CHYLGHR-NAMKP-ALTVAENLEFWAA 99 (207)
T ss_pred cEEecCC-CcCCC-CCcHHHHHHHHHH
Confidence 4566654 33333 4899999877543
No 76
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.70 E-value=6.4e-17 Score=132.44 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|++ + .+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+..
T Consensus 1 i~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN--V--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECC--e--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 478999999975 2 35779999999999999999999999999999999998 889987433211 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++++|+ ..++. .+++.+|+.+...
T Consensus 74 i~~~~q~-~~~~~-~~tv~~~l~~~~~ 98 (213)
T cd03301 74 IAMVFQN-YALYP-HMTVYDNIAFGLK 98 (213)
T ss_pred EEEEecC-hhhcc-CCCHHHHHHHHHH
Confidence 5677765 34554 3799999987654
No 77
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.1e-17 Score=136.24 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=73.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.+|+++|+++.|++ + .+++|+||++++|++++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 2 ATLTAKNLAKAYKG--R--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred ceEEEeCcEEEeCC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 47999999999975 2 35779999999999999999999999999999999998 889987443311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..++. .+++.+|+.+..
T Consensus 75 ~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~ 103 (241)
T PRK10895 75 RARRGIGYLPQE-ASIFR-RLSVYDNLMAVL 103 (241)
T ss_pred HHHhCeEEeccC-Ccccc-cCcHHHHHhhhh
Confidence 12345677765 44454 379999998754
No 78
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.70 E-value=6.1e-17 Score=149.69 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=99.3
Q ss_pred CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCcCCCCCeEEEeeeEEEcCccc------
Q 029679 18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALA------ 91 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~~~------ 91 (189)
...+..|++|.+-+.+ +..+++..|.+++++.++...+............++|+++|+++.|+...
T Consensus 224 ~dri~~l~~G~i~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 295 (529)
T PRK15134 224 ADRVAVMQNGRCVEQN--------RAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRT 295 (529)
T ss_pred cCEEEEEECCEEEEeC--------CHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccc
Confidence 3567778888764322 22455667778888888765432111111112456899999999995210
Q ss_pred -eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------CCCeEEEEecCC
Q 029679 92 -QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------PPDVATVLPMDG 159 (189)
Q Consensus 92 -~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------~~~~~~vv~~~~ 159 (189)
....++++|||+|++||+++|+|+||||||||+|+|+|++ +++|++...+.. .+...++++|+.
T Consensus 296 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 296 VDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred cccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 0123678999999999999999999999999999999998 467887433211 023357778764
Q ss_pred C-CCCCCccChhhhHHHHHH
Q 029679 160 F-HLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 160 ~-~l~~~~ltv~enl~~~~~ 178 (189)
. .+++ .+++.+|+.+...
T Consensus 372 ~~~l~~-~~tv~e~l~~~~~ 390 (529)
T PRK15134 372 NSSLNP-RLNVLQIIEEGLR 390 (529)
T ss_pred hhhcCC-cccHHHHHHHHHH
Confidence 2 3444 4899999988653
No 79
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.70 E-value=4.5e-17 Score=133.13 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=71.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|+. + .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 l~~~~l~~~~~~--~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGD--F--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECC--e--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 478999999975 2 35779999999999999999999999999999999998 899987443311
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++...+++|+ ..+++ .+++.+|+.+..
T Consensus 74 ~~~~i~~~~q~-~~~~~-~~t~~e~l~~~~ 101 (213)
T cd03262 74 LRQKVGMVFQQ-FNLFP-HLTVLENITLAP 101 (213)
T ss_pred HHhcceEEecc-cccCC-CCcHHHHHHhHH
Confidence 12345677765 44554 379999998754
No 80
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.70 E-value=5.7e-17 Score=137.93 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCe
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV 151 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~ 151 (189)
.++|+++|+++.|++ + .+++++||+|.+||+++|+|+||||||||+++|+|+++ +++|++..++.. .+..
T Consensus 10 ~~~l~i~~l~~~~~~--~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--R--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARED 82 (257)
T ss_pred CCcEEEEEEEEEECC--c--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCc
Confidence 367999999999975 2 35779999999999999999999999999999999998 899997544321 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++++|+ ..+++ .+++.+|+.+.
T Consensus 83 i~~v~q~-~~l~~-~~tv~enl~~~ 105 (257)
T PRK11247 83 TRLMFQD-ARLLP-WKKVIDNVGLG 105 (257)
T ss_pred eEEEecC-ccCCC-CCcHHHHHHhc
Confidence 5677765 34444 47999998764
No 81
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=6.2e-17 Score=131.94 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=72.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
||+++|+++.|++ + .+++++||++++||+++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 ml~~~~l~~~~~~--~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHD--Q--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCC--e--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 4899999999975 2 25779999999999999999999999999999999998 899987543321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+..++++++ ..+++ .+++.+|+.+..
T Consensus 74 ~~i~~~~q~-~~~~~-~~tv~~~~~~~~ 99 (200)
T PRK13540 74 KQLCFVGHR-SGINP-YLTLRENCLYDI 99 (200)
T ss_pred hheEEeccc-cccCc-CCCHHHHHHHHH
Confidence 235666654 44444 389999988753
No 82
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.70 E-value=4.6e-17 Score=135.20 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=72.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C-------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P------- 148 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~------- 148 (189)
|+++|+++.|+. + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGG--L--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECC--E--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 468999999975 2 35779999999999999999999999999999999998 889987433311 0
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+...++++|+ ..+++ .+++.+|+.+....
T Consensus 74 ~~~i~~v~q~-~~l~~-~~tv~~~l~~~~~~ 102 (236)
T cd03219 74 RLGIGRTFQI-PRLFP-ELTVLENVMVAAQA 102 (236)
T ss_pred hcCEEEEecc-ccccc-CCCHHHHHHHHHhh
Confidence 1235677765 45555 38999999886543
No 83
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.7e-17 Score=134.87 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=73.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
+++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 2 ~~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 2 KFAIETVNLRVYYGS--N--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred cceEEEEeEEEEeCC--e--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 457999999999975 2 3578999999999999999999999999999999999710 1248887433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .+++.+|+.+...
T Consensus 78 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~~ 111 (253)
T PRK14267 78 VDPIEVRREVGMVFQY-PNPFP-HLTIYDNVAIGVK 111 (253)
T ss_pred cChHHHhhceeEEecC-CccCC-CCcHHHHHHHHHH
Confidence 12345677765 44554 3899999987653
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.70 E-value=5e-17 Score=134.41 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=71.8
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh-----cccCCCceeeccCCCC-----
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVK----- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~-----~~~~p~~G~i~~~~~~----- 147 (189)
|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++ + +++|++...+..
T Consensus 1 i~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGD--K--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCC--c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 578999999975 2 3577999999999999999999999999999999999 7 889987443321
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+ ..++ . +++.+|+.+....
T Consensus 74 ~~~~~~~~~i~~~~q~-~~~~-~-~tv~e~l~~~~~~ 107 (227)
T cd03260 74 VDVLELRRRVGMVFQK-PNPF-P-GSIYDNVAYGLRL 107 (227)
T ss_pred hHHHHHHhhEEEEecC-chhc-c-ccHHHHHHhHHHh
Confidence 12235677766 3444 3 8999999876543
No 85
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.4e-17 Score=138.94 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=74.9
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
+|+++|+++.|+.... ...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999964211 1246889999999999999999999999999999999998 999987443311
Q ss_pred --CCCeEEEEecCCC-CCCCCccChhhhHHHHHHHc
Q 029679 148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 --~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~~ 180 (189)
.+...+|++|+.. .++ .+++++|+.+.....
T Consensus 79 ~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~ 112 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLF--EETIEKDIAFGPINL 112 (287)
T ss_pred HHHhhceEEEecCchhccc--cccHHHHHHhHHHHC
Confidence 1234678887632 333 269999998765443
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.70 E-value=3.4e-17 Score=136.56 Aligned_cols=91 Identities=23% Similarity=0.357 Sum_probs=71.3
Q ss_pred eEEEeeeEEEcC-ccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~-~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
+|+++|+++.|+ + + .+++|+||++.+|++++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~--~--~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNG--K--QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCC--c--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 478999999997 3 2 35779999999999999999999999999999999998 889987443311
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+...++++|+ ..+++ .+++.+|+.+.
T Consensus 74 ~~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~ 103 (243)
T TIGR02315 74 LRKLRRRIGMIFQH-YNLIE-RLTVLENVLHG 103 (243)
T ss_pred HHHHHhheEEEcCC-Ccccc-cccHHHHHhhc
Confidence 12335677765 44554 37999998764
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.70 E-value=7.9e-17 Score=134.29 Aligned_cols=93 Identities=24% Similarity=0.206 Sum_probs=72.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
+|+++|+++.|+. + .+++++||+|.+||+++|+|+||||||||+++|+|+++ |++|.+...+.. ..
T Consensus 1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGA--R--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 4789999999975 2 35779999999999999999999999999999999998 899987433211 11
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...+++|+ ..++. .+++.+|+.+...
T Consensus 74 ~~i~~~~q~-~~~~~-~~t~~~~l~~~~~ 100 (236)
T TIGR03864 74 ARLGVVFQQ-PTLDL-DLSVRQNLRYHAA 100 (236)
T ss_pred hhEEEeCCC-CCCcc-cCcHHHHHHHHHH
Confidence 245677765 34444 3899999987554
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.1e-17 Score=138.10 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=74.2
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+.. . .+++|+||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 3 ~~l~~~~l~~~~~~~-~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-T--KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred ceEEEEEEEEEeCCC-C--eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 479999999999632 1 36789999999999999999999999999999999998 899997443321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+....+. .+++.+|+.+...
T Consensus 77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~ 106 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPV 106 (274)
T ss_pred HHhhEEEEecChhhhhc-cCcHHHHHHhhHH
Confidence 12346777876332333 3699999987654
No 89
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.70 E-value=8.1e-17 Score=133.63 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=73.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
..++|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 4 ~~~~i~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD--A--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKP 76 (225)
T ss_pred CCceEEEeccEEeeCC--c--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCH
Confidence 3458999999999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .++.+|+.+...
T Consensus 77 ~~~~~~i~~~~q~-~~l~~--~tv~enl~~~~~ 106 (225)
T PRK10247 77 EIYRQQVSYCAQT-PTLFG--DTVYDNLIFPWQ 106 (225)
T ss_pred HHHHhccEEEecc-ccccc--ccHHHHHHhHHh
Confidence 12345677765 44443 499999987543
No 90
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.1e-17 Score=137.67 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=74.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.++|+++|+++.|+...+ .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 5 ~~~l~~~nl~~~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 5 SVMIKVENVSFSYPNSEN--NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLK 79 (271)
T ss_pred ceEEEEEeEEEEcCCCCc--cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHH
Confidence 358999999999963212 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..+|++|+....+. .+++.+|+.+...
T Consensus 80 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~ 110 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFI-GATVEDDIAFGLE 110 (271)
T ss_pred HHhcceEEEEeCHHHhcC-cccHHHHHHhHHH
Confidence 12345677876322343 3799999987654
No 91
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.70 E-value=6e-17 Score=134.19 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=72.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P 148 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~ 148 (189)
|+++|+++.|+. + .+++|+||++.+||+++|+|+||||||||+++|+|+++ |++|++...+.. .
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQ--S--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCC--e--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 478999999975 2 35779999999999999999999999999999999998 899987443311 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+...++++|+ ..+++ .+++.+|+.+....
T Consensus 74 ~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~~ 102 (230)
T TIGR03410 74 RAGIAYVPQG-REIFP-RLTVEENLLTGLAA 102 (230)
T ss_pred HhCeEEeccC-CcccC-CCcHHHHHHHHHHh
Confidence 2235677765 44555 48999999876543
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.70 E-value=8.9e-17 Score=131.48 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=72.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|++. + .+++|+||++.+|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 l~~~~l~~~~~~~-~--~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNG-T--AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCC-c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 4789999999642 2 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++...+++|+ ..+++ .+++.+|+.+....
T Consensus 75 ~~~~~i~~v~q~-~~~~~-~~t~~~~l~~~~~~ 105 (214)
T cd03292 75 YLRRKIGVVFQD-FRLLP-DRNVYENVAFALEV 105 (214)
T ss_pred HHHHheEEEecC-chhcc-CCcHHHHHHHHHHH
Confidence 12245677765 44555 38999999886543
No 93
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.70 E-value=8.7e-17 Score=134.16 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=73.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 1 ~~i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDG--F--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 36899999999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..+++ .+++.+|+.+..
T Consensus 74 ~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~ 102 (242)
T TIGR03411 74 IARAGIGRKFQK-PTVFE-NLTVFENLELAL 102 (242)
T ss_pred HHhcCeeEeccc-cccCC-CCCHHHHHHHhh
Confidence 11235667765 45555 389999998754
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.7e-17 Score=138.89 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=75.2
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
||+++|+++.|+.... ...+|+||||+|.+||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999964211 1236789999999999999999999999999999999998 999987544321
Q ss_pred ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHHc
Q 029679 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~~ 180 (189)
.++..++++|+.. .++. .++.+|+.+.....
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~ 113 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNF 113 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHc
Confidence 1234677787632 3333 59999998876543
No 95
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.69 E-value=7.3e-17 Score=137.03 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred eEEEeeeEEEcCccc-----eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----
Q 029679 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---- 147 (189)
+|+++|+++.|+... ....+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01246789999999999999999999999999999999998 899987443311
Q ss_pred -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+....+...+++.+|+.+.+.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 116 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLR 116 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHH
Confidence 1234677787643222224789999876543
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=4.1e-17 Score=133.16 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=70.3
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEE
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVAT 153 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~ 153 (189)
+++|+++.|++. ..+++++||++++||+++|+|+||||||||+++|+|+++ |++|.+...+.. .++..+
T Consensus 1 ~~~~l~~~~~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 1 RIENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred CcccEEEEeCCc---CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcceE
Confidence 368999999652 135789999999999999999999999999999999998 899997543322 123456
Q ss_pred EEecCCCCCCCCccChhhhHHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+++|+....+. .+++.+|+.+...
T Consensus 75 ~~~q~~~~~~~-~~tv~e~l~~~~~ 98 (205)
T cd03226 75 YVMQDVDYQLF-TDSVREELLLGLK 98 (205)
T ss_pred EEecChhhhhh-hccHHHHHhhhhh
Confidence 77776322222 3699999987543
No 97
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=134.32 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=73.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
|++|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 1 ~~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 1 MNKIEIRDLKVSFGQ--V--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred CceEEEEeeEEEECC--e--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 457999999999975 2 3577999999999999999999999999999999998621 1368886433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .+++.+|+.+...
T Consensus 77 ~~~~~~~i~~v~q~-~~~~~-~~tv~enl~~~~~ 108 (250)
T PRK14247 77 VIELRRRVQMVFQI-PNPIP-NLSIFENVALGLK 108 (250)
T ss_pred HHHHhccEEEEecc-CccCC-CCcHHHHHHHHHH
Confidence 12345677766 33344 3899999987653
No 98
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=9.4e-17 Score=131.47 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=74.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-------KPP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-------~~~ 149 (189)
.+.++|+++.|+.......+++++||++++||+++|+|+||||||||+++|+|++++..+++|.+...+. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5889999999975322234678999999999999999999999999999999998632257887643221 123
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...+++|+ ...++ .+++.+|+.+...
T Consensus 83 ~~i~~~~q~-~~~~~-~~tv~~~l~~~~~ 109 (202)
T cd03233 83 GEIIYVSEE-DVHFP-TLTVRETLDFALR 109 (202)
T ss_pred ceEEEEecc-cccCC-CCcHHHHHhhhhh
Confidence 345677765 34444 3899999987653
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.4e-16 Score=136.46 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
|.+|+++|+++.|+.. + .+++||||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 ~~~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGS-K--EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCC-C--ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 3579999999999642 1 36789999999999999999999999999999999998 999987543321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.....++++|+....+. ..++.+|+.+...
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~ 105 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPI 105 (277)
T ss_pred HHHhheEEEecCcccccc-cccHHHHHHhHHH
Confidence 11245777776322222 3699999987543
No 100
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=9.8e-17 Score=133.88 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=72.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|++ + .+++|+||++.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~--~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGP--T--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 4789999999975 2 35779999999999999999999999999999999998 899987443311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++|+ ..+++ .+++.+|+.+..
T Consensus 74 ~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~ 102 (240)
T PRK09493 74 LIRQEAGMVFQQ-FYLFP-HLTALENVMFGP 102 (240)
T ss_pred HHhhceEEEecc-cccCC-CCcHHHHHHhHH
Confidence 12245677765 44554 379999998753
No 101
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.69 E-value=1.1e-16 Score=134.19 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=72.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC----
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK---- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~---- 147 (189)
+|+++|+++.|+. . .+++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|++...+..
T Consensus 1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGE--K--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECC--e--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 4789999999975 2 35779999999999999999999999999999999998 76 8987433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+ ..++. +++.+|+.+....
T Consensus 74 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~e~l~~~~~~ 108 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQK-PNPFP--MSIYDNIAYGPRL 108 (247)
T ss_pred ccchHHHHhheEEEecC-cccCC--CCHHHHHHhHHHh
Confidence 12346777765 34443 7999999876543
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=137.26 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=74.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+.. + .++++|||+|++||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~~-~--~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYSDG-T--HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeCCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 589999999999632 2 36789999999999999999999999999999999998 899987443321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...+|++|+....+. ..++.+|+.+....
T Consensus 78 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~ 110 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVN 110 (283)
T ss_pred HHHHhhEEEEecCcchhhc-cccHHHHHHhHHHH
Confidence 12346778876322222 26999999876543
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1e-16 Score=144.73 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=77.7
Q ss_pred CeEEEeeeEEEcCccce--------------------eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679 76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~ 135 (189)
.+|+++||+|.|+...+ ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--- 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence 46899999999976311 1236899999999999999999999999999999999998
Q ss_pred CCceeeccCCCC------------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 136 p~~G~i~~~~~~------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
|++|++...+.. .++..+|++|+ ..+++ .+++.+|+.+.+...+
T Consensus 80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~-~~l~~-~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS-FALMP-HMTVLDNTAFGMELAG 135 (400)
T ss_pred CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC-CcCCC-CCCHHHHHHHHHHhcC
Confidence 999987443311 02346777765 55665 4899999998765433
No 104
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=139.13 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--------- 146 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~--------- 146 (189)
+|+++|+++.|+.... ...+++||||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 4899999999975211 1246889999999999999999999999999999999998 88898643211
Q ss_pred -----------------------CCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 147 -----------------------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 147 -----------------------~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
..++..+|++|+....+. ..++.+|+.++....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~ 135 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMG 135 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcC
Confidence 012346788876322222 2699999988765443
No 105
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.69 E-value=1.6e-16 Score=131.15 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=73.0
Q ss_pred eEEEeeeEEEcCcc---ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC--CC--C--
Q 029679 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--K-- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~--~~--~-- 147 (189)
||+++|+++.|+.. .+...+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|.+... +. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 48999999999631 111346789999999999999999999999999999999998 888987432 21 1
Q ss_pred ----------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.....++++|+ ..+++ .+++.+|+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~ 116 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQF-LRVIP-RVSALEVVAEPLL 116 (224)
T ss_pred hcCHHHHHHHHhcceEEEecc-cccCC-CccHHHHHHHHHH
Confidence 01235677766 44555 4899999887543
No 106
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8.7e-17 Score=133.75 Aligned_cols=92 Identities=22% Similarity=0.313 Sum_probs=70.8
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C-----
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P----- 148 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~----- 148 (189)
|+++|+++.|++. + .+++|+||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 1 l~~~~l~~~~~~~-~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 1 IEVENLSKTYPNG-K--KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKALR 74 (241)
T ss_pred CEEeeEEEecCCc-c--EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHHH
Confidence 4789999999751 1 35779999999999999999999999999999999998 889987443211 0
Q ss_pred --CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 --~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+...++++|+ ..+++ .+++.+|+.+..
T Consensus 75 ~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~ 103 (241)
T cd03256 75 QLRRQIGMIFQQ-FNLIE-RLSVLENVLSGR 103 (241)
T ss_pred HHHhccEEEccc-Ccccc-cCcHHHHHHhhh
Confidence 2235677765 44554 389999997653
No 107
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.69 E-value=1.1e-16 Score=130.12 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
|+++|+++.|+. + .+++++||++.+||+++|+|+||||||||+++|+|+++ |++|.+...+.. .++
T Consensus 1 l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGE--R--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 478999999975 2 35789999999999999999999999999999999998 889987543321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..++++++ ..+++ .+++.+|+.+....
T Consensus 74 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~ 100 (198)
T TIGR01189 74 NILYLGHL-PGLKP-ELSALENLHFWAAI 100 (198)
T ss_pred heEEeccC-ccccc-CCcHHHHHHHHHHH
Confidence 34566654 44444 38999999876543
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.3e-16 Score=133.43 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=72.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+.. + .+++++||+|.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 l~~~~l~~~~~~~-~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVTKRYGGG-K--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEEEEeCCc-c--eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHhh
Confidence 4789999999752 1 25779999999999999999999999999999999998 899987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
....|++|+ ..+++ .+++.+|+.+....
T Consensus 75 ~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~ 102 (242)
T cd03295 75 RKIGYVIQQ-IGLFP-HMTVEENIALVPKL 102 (242)
T ss_pred cceEEEccC-ccccC-CCcHHHHHHHHHHH
Confidence 345677765 44554 38999999876543
No 109
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.69 E-value=7.4e-17 Score=131.25 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=69.6
Q ss_pred EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------
Q 029679 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------ 147 (189)
Q Consensus 80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------ 147 (189)
++|+++.|++ + .+++|+||++++||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 1 i~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGD--K--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECC--E--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 4689999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++++ ..+++ .+++.+|+.+...
T Consensus 74 ~~~~i~~~~q~-~~~~~-~~t~~e~~~~~~~ 102 (206)
T TIGR03608 74 RREKLGYLFQN-FALIE-NETVEENLDLGLK 102 (206)
T ss_pred HHhCeeEEecc-hhhcc-CCcHHHHHHHHHH
Confidence 12345667765 45555 3899999987543
No 110
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.69 E-value=4.9e-17 Score=133.25 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=69.5
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEE
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVL 155 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv 155 (189)
+++|+++.|+. + .+++++||+|++||+++|+|+||||||||+++|+|+++ |++|.+...+.. .++..+++
T Consensus 1 ~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--H--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred CcccceeEECC--E--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence 36899999975 2 35779999999999999999999999999999999998 899997544432 12345677
Q ss_pred ecCCCC-CCCCccChhhhHHHHH
Q 029679 156 PMDGFH-LYLSQLDAMEDPKEAH 177 (189)
Q Consensus 156 ~~~~~~-l~~~~ltv~enl~~~~ 177 (189)
+|+... ... .+++.+|+.+..
T Consensus 74 ~q~~~~~~~~-~~tv~e~l~~~~ 95 (213)
T cd03235 74 PQRRSIDRDF-PISVRDVVLMGL 95 (213)
T ss_pred ccccccccCC-CCcHHHHHHhcc
Confidence 766322 112 279999998754
No 111
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=138.14 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=74.4
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.|+++|+++.|+.... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999964211 1246889999999999999999999999999999999998 899987443321
Q ss_pred ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~ 179 (189)
.++..+|++|+.. .++. .++.+|+.+....
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~ 113 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMN 113 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHH
Confidence 1234677887632 3332 6999999886543
No 112
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=134.35 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=72.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGG--L--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECC--E--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 47999999999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+....+++|+ ..++. .+++.+|+.+..
T Consensus 77 ~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~ 105 (255)
T PRK11300 77 IARMGVVRTFQH-VRLFR-EMTVIENLLVAQ 105 (255)
T ss_pred HHhcCeEEeccC-cccCC-CCcHHHHHHHhh
Confidence 01224556765 44555 489999998754
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.4e-16 Score=130.43 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------~~ 150 (189)
|+++|+++.|+. + .+++|+||++++| +++|+|+||||||||+++|+|+++ +++|++...+... +.
T Consensus 1 i~~~~~~~~~~~--~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGK--K--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECC--E--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 478999999965 2 3577999999999 999999999999999999999998 8999975443221 23
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..++++|+ ..++. .+++.+|+.+....
T Consensus 73 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~ 99 (211)
T cd03264 73 RIGYLPQE-FGVYP-NFTVREFLDYIAWL 99 (211)
T ss_pred heEEecCC-Ccccc-cCCHHHHHHHHHHH
Confidence 45677766 34554 37999999876543
No 114
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=135.83 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=74.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------ 148 (189)
.++|+++|+++.|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++ +++|++...+...
T Consensus 5 ~~~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CceEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 3579999999999752 1235789999999999999999999999999999999998 8999875443211
Q ss_pred --CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 --~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
++..++++|+....+.. .++.+|+.+...
T Consensus 80 ~~~~~i~~v~q~~~~~~~~-~~v~~~~~~~~~ 110 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVG-SIVKYDVAFGLE 110 (269)
T ss_pred HHHhheeEEEeChHHhccc-ccHHHHHHhhHH
Confidence 23456777764323433 678888877643
No 115
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.68 E-value=1.4e-16 Score=135.67 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=73.1
Q ss_pred CeEEEeeeEEEcCccc-----eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---
Q 029679 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--- 147 (189)
++|+++|+++.|+... ....+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 5799999999996310 01246789999999999999999999999999999999998 899987443211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+....+...+++.+|+.+...
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 115 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLR 115 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHH
Confidence 1234567777643222224678888776543
No 116
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=135.91 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=71.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||+++|+++.|++ + .+++++||+|.+||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 ml~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQD--E--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCC--c--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 5899999999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+....+. ..++.+|+.+.+..
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~ 105 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRN 105 (271)
T ss_pred HHHhheEEEeeChhhccc-cccHHHHHHHHHHH
Confidence 01345677766322222 25688888775443
No 117
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.68 E-value=2e-16 Score=133.67 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=71.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~ 148 (189)
++|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ |++|++...+.. .
T Consensus 5 ~~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGP--R--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCC--c--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 57999999999975 2 35779999999999999999999999999999999998 899987433321 0
Q ss_pred ----------CCeEEEEecCCC-CCCCCccChhhhHHHHH
Q 029679 149 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ----------~~~~~vv~~~~~-~l~~~~ltv~enl~~~~ 177 (189)
+...+|++|+.. .++. .+++.+|+.+..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~-~~~~~~~i~~~~ 116 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRM-QVSAGGNIGERL 116 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCc-cccHHHHHHHHH
Confidence 123677777643 2333 367788876543
No 118
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.1e-16 Score=135.86 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.++|+++|+++.|++ + .+++|+||++++||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 9 ~~~l~i~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPG--R--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECC--E--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 357999999999975 2 35779999999999999999999999999999999998 899987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+....+++|+ ...++ .+++.+|+.+.
T Consensus 82 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~ 109 (265)
T PRK10575 82 AFARKVAYLPQQ-LPAAE-GMTVRELVAIG 109 (265)
T ss_pred HHhhheEEeccC-CCCCC-CccHHHHHHhC
Confidence 12345677765 33444 37999998764
No 119
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.68 E-value=9.9e-17 Score=144.86 Aligned_cols=94 Identities=19% Similarity=0.343 Sum_probs=74.6
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
|++|+++|+++.|++ + .+|+++||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 1 ~~~L~~~nls~~y~~--~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGD--T--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECC--E--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 358999999999975 2 35789999999999999999999999999999999998 999987543321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++|+ ..++. .+++.+|+.+..
T Consensus 74 ~~~~~ig~v~q~-~~l~~-~~tv~e~v~~~~ 102 (402)
T PRK09536 74 AASRRVASVPQD-TSLSF-EFDVRQVVEMGR 102 (402)
T ss_pred HHhcceEEEccC-CCCCC-CCCHHHHHHhcc
Confidence 12346777766 44444 389999998754
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=8.9e-17 Score=131.39 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=69.9
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CCC
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPD 150 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~~ 150 (189)
+++|+++.|+...+ .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .+.
T Consensus 1 ~~~~l~~~~~~~~~--~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 1 ELKNLSFSYPDGAR--PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred CceeEEEecCCCCe--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence 36899999965211 35779999999999999999999999999999999998 899987443321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
..++++|+....+. .+++.+|+.+...
T Consensus 76 ~i~~~~q~~~~~~~-~~t~~~~l~~~~~ 102 (211)
T cd03225 76 KVGLVFQNPDDQFF-GPTVEEEVAFGLE 102 (211)
T ss_pred hceEEecChhhhcC-CCcHHHHHHHHHH
Confidence 45677776322233 3799999987543
No 121
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=136.42 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=72.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------- 148 (189)
+|+++|+++.|+.. + .+++||||+|++||+++|+|+||||||||+|+|+|+++ +++|++...+...
T Consensus 1 ml~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYPDG-T--PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcCCC-C--ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence 48899999999532 1 36779999999999999999999999999999999998 8999874433211
Q ss_pred -CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 -~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...++++|+....+. ..++.+|+.+...
T Consensus 75 ~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~ 104 (274)
T PRK13644 75 IRKLVGIVFQNPETQFV-GRTVEEDLAFGPE 104 (274)
T ss_pred HHhheEEEEEChhhhcc-cchHHHHHHhhHH
Confidence 2335777776332233 2699999987653
No 122
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=1.8e-16 Score=127.64 Aligned_cols=89 Identities=24% Similarity=0.250 Sum_probs=70.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.| +++++||++++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 579999999988 4679999999999999999999999999999999998 899987443311
Q ss_pred -CCCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679 148 -PPDVATVLPMDGF--HLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -~~~~~~vv~~~~~--~l~~~~ltv~enl~~~ 176 (189)
.++...+++|+.. .+++ .+++.+|+.+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~-~~t~~e~l~~~ 102 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVL-DLSVAENIALS 102 (182)
T ss_pred HHhCCeEEecCCcccCcccC-CCcHHHHHHHH
Confidence 1234567776532 2343 47999998764
No 123
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=134.10 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=73.1
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.+|+++|+++.|++ + .+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGE--H--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 46999999999975 2 35779999999999999999999999999999999998 889987433311
Q ss_pred -------------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -------------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+ ..++.. +++++|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~-~~l~~~-~sv~enl~~~ 116 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQH-FNLWSH-MTVLENVMEA 116 (257)
T ss_pred cccccccchHHHHHhhceEEEecC-cccCCC-CcHHHHHHHH
Confidence 02345777765 455553 8999999764
No 124
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=131.95 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=73.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.|+|+++|+++.|+. + .+++++||+|++||+++|+|+||||||||+|+|+|++... .+++|++...+..
T Consensus 4 ~~~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGD--F--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECC--e--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 468999999999975 2 3577999999999999999999999999999999997411 1468886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. .++.+|+.+....
T Consensus 80 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~ 113 (253)
T PRK14242 80 VDVVELRRRVGMVFQK-PNPFP--KSIFENVAYGLRV 113 (253)
T ss_pred cCHHHHhhcEEEEecC-CCCCc--CcHHHHHHHHHHH
Confidence 12346777765 44554 4899999876543
No 125
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=1.5e-16 Score=134.80 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
+|+++|+++.|++ + .+++|+||+|.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 2 ~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGG--R--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 6899999999975 2 35779999999999999999999999999999999998 899987543321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
....++++|+ ..++. .+++.+|+.+..
T Consensus 75 ~~~i~~~~q~-~~~~~-~~tv~e~l~~~~ 101 (258)
T PRK13548 75 ARRRAVLPQH-SSLSF-PFTVEEVVAMGR 101 (258)
T ss_pred hhheEEEccC-CcCCC-CCCHHHHHHhhh
Confidence 2335677765 34434 379999988754
No 126
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.5e-16 Score=138.88 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=79.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceee-ccCCC-------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQV------- 146 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i-~~~~~------- 146 (189)
+|+++|++..|......+.+|+||||+|.+||++||||+|||||||++++|+||++. ....+|++ +++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999997643457899999999999999999999999999999999999962 23355665 43331
Q ss_pred ----CCCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 147 ----~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+.+.+.++||+...-+.+.+++-+.+...+..
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~ 117 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHH
Confidence 123456788888766666678888888877654
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.5e-16 Score=132.99 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=71.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|+. + .+++|+||++.+||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 2 ~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGA--H--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECC--e--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 5899999999975 2 35779999999999999999999999999999999998 899987543321
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
.+...++++|+ ..+++ .+++.+|+.+
T Consensus 75 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~i~~ 105 (242)
T PRK11124 75 KAIRELRRNVGMVFQQ-YNLWP-HLTVQQNLIE 105 (242)
T ss_pred hhHHHHHhheEEEecC-ccccC-CCcHHHHHHH
Confidence 02235677765 44554 3799999864
No 128
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=135.97 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=74.4
Q ss_pred CeEEEeeeEEEcCccce--eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+...+ ...+++||||+|.+||+++|+|+||||||||+++|+|+++ +++|.+...+..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 58999999999964211 1236789999999999999999999999999999999998 899987443211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+....+. ..++.+|+.+....
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~ 113 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPEN 113 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhh
Confidence 12346777876322222 25789999876543
No 129
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=137.20 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.|+++|+++.|+.... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999964211 1246889999999999999999999999999999999998 999987443311
Q ss_pred ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+.. .++. .++.+|+.+....
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~ 113 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKN 113 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHH
Confidence 1234677887632 3333 4899999886543
No 130
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.5e-16 Score=132.61 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 5 ~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 5 EAIIETENLNLFYTD--F--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred CceEEEeeeEEEeCC--c--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 358999999999975 2 2567999999999999999999999999999999999711 0247876432211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..+|++|+ ..++ . +++++|+.+....
T Consensus 81 ~~~~~~~~~i~~v~q~-~~~~-~-~tv~eni~~~~~~ 114 (254)
T PRK14273 81 FDILELRRKIGMVFQT-PNPF-L-MSIYDNISYGPKI 114 (254)
T ss_pred ccHHHHhhceEEEeec-cccc-c-CcHHHHHHHHHHh
Confidence 12346777766 3444 3 7999999886543
No 131
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=136.76 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=73.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc---eeeccCCCC-----
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK----- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~---G~i~~~~~~----- 147 (189)
.+|+++|+++.|++..+ .++++|||+|.+||+++|+|+||||||||+++|+|++. +++ |.+...+..
T Consensus 4 ~~l~i~~l~~~~~~~~~--~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCCCc--cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence 47999999999964211 36789999999999999999999999999999999998 765 776433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+....+. .+++.+|+.+....
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~ 112 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLEN 112 (282)
T ss_pred HHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHh
Confidence 12345777876332343 37999999876543
No 132
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.6e-16 Score=132.88 Aligned_cols=98 Identities=10% Similarity=0.115 Sum_probs=73.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|++ + .+++++||+|.+||+++|+|+||||||||+++|+|++.+ ..|++|++...+..
T Consensus 3 ~~l~i~~v~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 3 KRIDVKDLNIYYGS--F--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred ccEEEeeEEEEECC--E--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 36999999999975 2 367899999999999999999999999999999999861 11268887433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..++++|+ ..++. .+++.+|+.+....
T Consensus 79 ~~~~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~~~ 112 (258)
T PRK14241 79 DPVAVRRTIGMVFQR-PNPFP-TMSIRDNVVAGLKL 112 (258)
T ss_pred ChHHHhcceEEEccc-cccCC-CCcHHHHHHHHHHh
Confidence 12345677765 44554 37999999876543
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.68 E-value=1.4e-16 Score=133.91 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=70.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|+. + .+++||||+|++||+++|+|+||||||||+|+|+|++. +++|++...+..
T Consensus 1 i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGI--L--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCC--e--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 478999999975 2 35779999999999999999999999999999999998 889986433211
Q ss_pred -----------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+ ..+++ .+++.+|+.+.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~-~~~~~-~~tv~~nl~~~ 111 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQS-FNLFP-HKTVLDNVTEA 111 (252)
T ss_pred ccccchhHHHHHhhCeEEEecC-cccCC-CCcHHHHHHHH
Confidence 12345677765 45554 37999999875
No 134
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2e-16 Score=135.38 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=74.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+.. ....+++||||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 3 ~~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 3 KILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred ceEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence 379999999999742 11236789999999999999999999999999999999998 999987443311
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+....+. ..++.+|+.+...
T Consensus 79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~ 108 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFV-GATVEDDVAFGME 108 (277)
T ss_pred HhcceEEEEECHHHhhc-cCCHHHHHHhhHH
Confidence 12346777876322333 3799999987643
No 135
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.1e-16 Score=136.05 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=73.5
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
+|+++|+++.|+.... ...+++||||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974210 1236789999999999999999999999999999999998 999987443321
Q ss_pred ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+.. .++ . +++.+|+.++..
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~-~tv~e~l~~~~~ 112 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-E-NTVLKDVEFGPK 112 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-c-chHHHHHHHHHH
Confidence 0124577777632 233 2 799999987654
No 136
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.67 E-value=2.2e-16 Score=130.33 Aligned_cols=98 Identities=21% Similarity=0.138 Sum_probs=74.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|+.......+++|+||++++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999642111346789999999999999999999999999999999998 899987433221
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++++ ..++. .+++.+|+.+....
T Consensus 78 ~~~~~~i~~~~q~-~~~~~-~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 78 VQLRRNIGYIFQA-HNLLG-FLTARQNVQMALEL 109 (220)
T ss_pred HHHHhheEEEcCC-hhhcC-CCCHHHHHHHHHHh
Confidence 12345677765 45554 37999999876543
No 137
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.8e-16 Score=132.85 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=73.3
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 9 ~~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 9 AQPQIKVENLNLWYGE--K--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred cceeEEEeeeEEEeCC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 3468999999999975 2 2577999999999999999999999999999999998621 1268886432211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..+|++|+ ..++. +++.+|+.+...
T Consensus 85 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~ 118 (258)
T PRK14268 85 DVDVVELRKNVGMVFQK-PNPFP--MSIYDNVAYGPR 118 (258)
T ss_pred cchHHHHhhhEEEEecC-CccCc--ccHHHHHHHHHH
Confidence 12345677765 44443 799999987653
No 138
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.5e-16 Score=133.17 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=83.2
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++++++++++.|++. ..+++++||+|.+|+.++|+|+||||||||+++|+||+. |++|.+...+..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 579999999999774 346889999999999999999999999999999999999 999997433321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
.++..++++|+..+.+.. -+|.++++|+....+.+.
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~ 112 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPR 112 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCH
Confidence 245577888776555443 699999999998877664
No 139
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=133.29 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=73.7
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++||||++.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 17 ~~~~l~~~nl~~~~~~--~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--K--EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCeEEEEeeEEEEECC--e--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3458999999999965 2 3577999999999999999999999999999999998521 1478886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .++.+|+.++..
T Consensus 93 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~eni~~~~~ 126 (267)
T PRK14237 93 EINVYEMRKHIGMVFQR-PNPFA--KSIYENITFALE 126 (267)
T ss_pred cCChHHHhcceEEEecC-Ccccc--ccHHHHHHhHHH
Confidence 12345777765 44443 589999988654
No 140
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=8.6e-17 Score=137.75 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=59.4
Q ss_pred CCeEEEeeeEEEcCcc----ce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679 75 IPVVEARCMDEVYDAL----AQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~----~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~ 145 (189)
+++++++|+++.|... .. .+.||+||||+|.+||++||||+||||||||.|+|+||++ |++|+++..+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g 74 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEG 74 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcC
Confidence 4689999999999542 11 3689999999999999999999999999999999999999 9999975443
No 141
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.2e-16 Score=137.37 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCCeEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----
Q 029679 74 EIPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----- 147 (189)
..++|+++|+++.|+... ....+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccc
Confidence 446899999999996421 11246889999999999999999999999999999999998 899987443210
Q ss_pred -------------------CCCeEEEEecCC-CCCCCCccChhhhHHHHHH
Q 029679 148 -------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -------------------~~~~~~vv~~~~-~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+. ..++. .++.+|+.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~ 143 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPV 143 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHH
Confidence 123467777763 23443 589999987653
No 142
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=131.63 Aligned_cols=96 Identities=14% Similarity=0.235 Sum_probs=72.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + .+++++||++++||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 2 PIIEIENFSAYYGE--K--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred ceEEEEeeEEEeCC--c--eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 57999999999975 2 3577999999999999999999999999999999998621 1378886433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. +++++|+.+...
T Consensus 78 ~~~~~~~~i~~~~q~-~~~~~--~tv~e~l~~~~~ 109 (250)
T PRK14262 78 DVTEYRKKVGMVFQK-PTPFP--MSIYDNVAFGPR 109 (250)
T ss_pred hHHHhhhhEEEEecC-CccCc--ccHHHHHHHHHH
Confidence 12346677765 33443 699999987653
No 143
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=1.9e-16 Score=129.36 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=69.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
|+++|+++.|+. + ..++++||+|++||+++|+|+||||||||+++|+|+++ +++|++...+.. .+.
T Consensus 1 l~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDG--R--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCC--c--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 478999999975 2 35779999999999999999999999999999999998 889987433211 122
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
..++++|+ ..++. .+++.+|+.+.
T Consensus 74 ~i~~~~q~-~~~~~-~~tv~e~l~~~ 97 (201)
T cd03231 74 GLLYLGHA-PGIKT-TLSVLENLRFW 97 (201)
T ss_pred heEEeccc-cccCC-CcCHHHHHHhh
Confidence 35566654 44444 37999998764
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=132.54 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~----- 147 (189)
..+|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+++|+|++. +..+++|++...+..
T Consensus 11 ~~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--F--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCC--e--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 457999999999975 2 35779999999999999999999999999999999985 222578886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. +++.+|+.+...
T Consensus 87 ~~~~~~~~~i~~~~q~-~~~~~--~tv~~nl~~~~~ 119 (260)
T PRK10744 87 QDIALLRAKVGMVFQK-PTPFP--MSIYDNIAFGVR 119 (260)
T ss_pred cchHHHhcceEEEecC-CccCc--CcHHHHHhhhHh
Confidence 12346677766 34443 699999987643
No 145
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.2e-16 Score=149.06 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV------- 146 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~------- 146 (189)
.+++|+++|+++.|+.......+++||||+|.+||++||+|+||||||||+|+|+|+++ +++|.+..++.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence 45689999999999642122347889999999999999999999999999999999998 88888642211
Q ss_pred --------C-------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679 147 --------K-------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 147 --------~-------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~ 179 (189)
. +....++++|+.. .+++ .+++.+|+.+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~-~~tv~e~l~~~~~~ 133 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP-VFTVGEQIAESIRL 133 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCC-CCCHHHHHHHHHHH
Confidence 0 1123577787632 3444 48999999987643
No 146
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.67 E-value=3.4e-16 Score=129.28 Aligned_cols=93 Identities=24% Similarity=0.274 Sum_probs=71.8
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeEE
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVAT 153 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~~ 153 (189)
|+++|+++.|+. + .+++++||++++||+++|+|+||||||||+++|+|+++ +++|.+...+.. ..+..+
T Consensus 1 l~l~~v~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK--Q--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECC--E--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 478999999975 2 35779999999999999999999999999999999998 899987543321 123456
Q ss_pred EEecCCCCCCCCccChhhhHHHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+++++ ..++. .+++.+|+.+....
T Consensus 74 ~~~q~-~~~~~-~~t~~~~~~~~~~~ 97 (223)
T TIGR03740 74 SLIES-PPLYE-NLTARENLKVHTTL 97 (223)
T ss_pred EEcCC-CCccc-cCCHHHHHHHHHHH
Confidence 66765 34444 37999999876543
No 147
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.1e-16 Score=135.13 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=71.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
+|+++|+++.|+.. + .+++||||+|++||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 1 ~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDG-T--EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 48899999999632 2 25779999999999999999999999999999999998 889987443311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+....+.. .++.+|+.+..
T Consensus 75 ~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~ 104 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFA-PTVEEDVAFGP 104 (275)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHH
Confidence 123467778763222222 68999998754
No 148
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.9e-16 Score=131.89 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++.+ ..+++|++...+..
T Consensus 9 ~~~~l~i~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ--H--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred CCceEEEeeEEEEECC--e--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 4568999999999975 2 357799999999999999999999999999999999851 11257886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. .++++|+.+....
T Consensus 85 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~ 119 (259)
T PRK14274 85 KVDLVELRKNIGMVFQK-GNPFP--QSIFDNVAYGPRI 119 (259)
T ss_pred ccCHHHHhhceEEEecC-Ccccc--cCHHHHHHhHHHh
Confidence 12346777766 34444 4899999876543
No 149
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2e-16 Score=132.53 Aligned_cols=92 Identities=20% Similarity=0.172 Sum_probs=71.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.+|+++|+++.|++ + ..++|+||+|.+|++++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 2 NEIEFKEVSYSSFG--K--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred ceEEEEeEEEEeCC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence 46899999999965 2 25779999999999999999999999999999999998 899987443311
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..++. .++.+|+.+..
T Consensus 75 ~~~~i~~~~q~-~~~~~--~tv~e~l~~~~ 101 (241)
T PRK14250 75 LRRKIGMVFQQ-PHLFE--GTVKDNIEYGP 101 (241)
T ss_pred hhhcEEEEecC-chhch--hhHHHHHhcch
Confidence 12345677776 44443 58999987643
No 150
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.1e-16 Score=130.58 Aligned_cols=97 Identities=9% Similarity=0.115 Sum_probs=72.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------ 147 (189)
..|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+++|+|+++ +..+++|++...+..
T Consensus 3 ~~l~~~nl~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGK--N--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCC--e--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 36899999999975 2 35779999999999999999999999999999999984 111357876433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. .+++.+|+.+...
T Consensus 79 ~~~~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~~ 111 (252)
T PRK14256 79 DPVSIRRRVGMVFQK-PNPFP-AMSIYDNVIAGYK 111 (252)
T ss_pred ChHHhhccEEEEecC-CCCCC-cCcHHHHHHhHHH
Confidence 12346677766 44554 3799999987544
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-16 Score=132.43 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=73.6
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
.+++|+++|+++.|++ + .+++|+||+|++|++++|+|+||||||||+|+|+|++++. .+++|++...+..
T Consensus 16 ~~~~l~~~nl~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~ 91 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--K--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91 (267)
T ss_pred CCceEEEEeEEEEECC--E--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence 3468999999999975 2 3577999999999999999999999999999999998610 1378887433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .++.+|+.+...
T Consensus 92 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~ 125 (267)
T PRK14235 92 RLDVVELRARVGMVFQK-PNPFP--KSIYENVAYGPR 125 (267)
T ss_pred ccchHHHhhceEEEecC-CCCCC--CcHHHHHHHHHH
Confidence 12345677765 44454 489999987654
No 152
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.4e-16 Score=130.87 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=73.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|+.++. .+++|++...+..
T Consensus 2 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 2 KIKMESKNLNLWYGE--K--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred ccEEEEEEeEEEECC--e--eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 368999999999975 2 3577999999999999999999999999999999998621 1267886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. +++.+|+.+....
T Consensus 78 ~~~~~~~~~i~~~~q~-~~~~~--~tv~enl~~~~~~ 111 (251)
T PRK14270 78 VDVVELRKRVGMVFQK-PNPFP--MSIYDNVAYGPRI 111 (251)
T ss_pred ccHHHHHhheEEEecC-CCcCC--CcHHHHHHhHHHh
Confidence 12346777866 34443 7999999876543
No 153
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=2.1e-16 Score=128.86 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=69.5
Q ss_pred EEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (189)
Q Consensus 78 l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~ 156 (189)
|+++|+++.|+.... ...+++++||+|++|++++|+|+||||||||+++|+|+++ +++|++...+ ..++++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~ 72 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS 72 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence 478999999975310 0136789999999999999999999999999999999998 9999975443 456777
Q ss_pred cCCCCCCCCccChhhhHHHH
Q 029679 157 MDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 157 ~~~~~l~~~~ltv~enl~~~ 176 (189)
++ ..++. .++.+|+.+.
T Consensus 73 q~-~~l~~--~t~~enl~~~ 89 (204)
T cd03250 73 QE-PWIQN--GTIRENILFG 89 (204)
T ss_pred cC-chhcc--CcHHHHhccC
Confidence 66 34442 6899888764
No 154
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=132.85 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=72.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------- 148 (189)
++|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|++++..+++|++...+...
T Consensus 3 ~~l~~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 3 TIIRVEKLAKTFNQ--H--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred cEEEEeeEEEEeCC--e--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 58999999999975 2 357799999999999999999999999999999999972112347764332110
Q ss_pred ------CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ------~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+...++++|+ ..+++ .+++.+|+.+..
T Consensus 79 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~ 111 (262)
T PRK09984 79 RDIRKSRANTGYIFQQ-FNLVN-RLSVLENVLIGA 111 (262)
T ss_pred hhHHHHHhheEEEccc-ccccc-CCcHHHHHHhhh
Confidence 1235677765 45555 489999998653
No 155
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.66 E-value=2.6e-16 Score=131.09 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=69.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC--------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~-------- 147 (189)
|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+|+|+|++ + +++|++...+..
T Consensus 1 l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVED--K--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECC--E--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 478999999975 2 3577999999999999999999999999999999995 5 788987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..+++ .+++.+|+.+.+.
T Consensus 74 ~~~~~i~~v~q~-~~~~~-~~t~~~~~~~~~~ 103 (243)
T TIGR01978 74 RARAGLFLAFQY-PEEIP-GVSNLEFLRSALN 103 (243)
T ss_pred hhccceEeeecc-ccccC-CcCHHHHHHHHHH
Confidence 01124566655 44554 4889999877543
No 156
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.66 E-value=3.9e-16 Score=131.18 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=69.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|+.. .+++|+||+|++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~~----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCc----eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 479999999999752 24679999999999999999999999999999999998 889987433211
Q ss_pred -C--------CCeEEEEecCCC-CCCCCccChhhhHHH
Q 029679 148 -P--------PDVATVLPMDGF-HLYLSQLDAMEDPKE 175 (189)
Q Consensus 148 -~--------~~~~~vv~~~~~-~l~~~~ltv~enl~~ 175 (189)
. ++..++++|+.. .++. .+++.+|+.+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~-~~~~~~~i~~ 111 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRM-RVSAGANIGE 111 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCc-cccHHHHHHH
Confidence 0 123567777643 2333 3677777754
No 157
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=4.7e-16 Score=126.31 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=69.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC----CCeE
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 152 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~----~~~~ 152 (189)
+|+++|+++.|+. +. +.++||++++||+++|+|+||||||||+++|+|+++ +++|.+...+... .+..
T Consensus 1 ~l~~~~l~~~~~~--~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KN---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECC--cE---EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 4789999999965 22 235999999999999999999999999999999998 8999875443221 2234
Q ss_pred EEEecCCCCCCCCccChhhhHHHHH
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+++++ ...+. .+++.+|+.+..
T Consensus 73 ~~~~~~-~~~~~-~~tv~~~l~~~~ 95 (195)
T PRK13541 73 TYIGHN-LGLKL-EMTVFENLKFWS 95 (195)
T ss_pred EeccCC-cCCCc-cCCHHHHHHHHH
Confidence 566654 33333 389999998754
No 158
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.5e-16 Score=131.28 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
+++++|+++.|+. + ..++|+||++.+||+++|+|+||||||||+++|+|++++..+++|++...+.. .
T Consensus 2 ~~~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGK--K--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECC--E--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 5889999999975 2 35779999999999999999999999999999999985333688887443311 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...+|++|+ ..++. .++.+|+.+...
T Consensus 78 ~~~i~~~~q~-~~l~~--~tv~eni~~~~~ 104 (246)
T PRK14269 78 RKNVGMVFQQ-PNVFV--KSIYENISYAPK 104 (246)
T ss_pred hhhEEEEecC-Ccccc--ccHHHHhhhHHh
Confidence 2345777766 44554 599999987643
No 159
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=130.49 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=71.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + .+++++||+|.+||+++|+|+||||||||+++|+|+. .+..+++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~--~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 4 PILQVSDLSVYYNK--K--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred ceEEEEeeEEEECC--e--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 57999999999975 2 3577999999999999999999999999999999985 3111247886433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. +++.+|+.+....
T Consensus 80 ~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~ 112 (252)
T PRK14239 80 DTVDLRKEIGMVFQQ-PNPFP--MSIYENVVYGLRL 112 (252)
T ss_pred chHhhhhcEEEEecC-CccCc--CcHHHHHHHHHHH
Confidence 12346777766 34443 6999999876543
No 160
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.66 E-value=3.5e-16 Score=133.31 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCeEEEeeeEEEcCcc-----ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--
Q 029679 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-- 147 (189)
|++|+++|+++.|+.. .....+++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 4579999999999731 001235789999999999999999999999999999999998 889987443321
Q ss_pred ---------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+....+....++.+|+.+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~ 115 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP 115 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH
Confidence 12346777776432232247888887654
No 161
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.66 E-value=2.8e-16 Score=141.11 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=66.2
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC----C------------CCCeEEEEec
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----K------------PPDVATVLPM 157 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~----~------------~~~~~~vv~~ 157 (189)
..+|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+. . +++..+|++|
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 457899999999999999999999999999999999998 99999744321 1 1134677776
Q ss_pred CCCCCCCCccChhhhHHHHHHHcC
Q 029679 158 DGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 158 ~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
+ +.+++ .+|+.+|+.+++...+
T Consensus 114 ~-~~l~p-~~Tv~eNi~~~~~~~g 135 (382)
T TIGR03415 114 K-FALMP-WLTVEENVAFGLEMQG 135 (382)
T ss_pred C-CcCCC-CCcHHHHHHHHHHhcC
Confidence 5 66776 4899999998865443
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=132.57 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=71.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
+|+++|+++.|++ + .+++++||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 2 ~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGT--K--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECC--E--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 6899999999975 2 35779999999999999999999999999999999998 889987443321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
+...++++|+. .++. .+++.+|+.++
T Consensus 75 ~~~i~~~~q~~-~~~~-~~tv~~~i~~~ 100 (255)
T PRK11231 75 ARRLALLPQHH-LTPE-GITVRELVAYG 100 (255)
T ss_pred hhheEEecccC-CCCC-CccHHHHHHhc
Confidence 22356777663 3444 37899998764
No 163
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.8e-16 Score=131.72 Aligned_cols=98 Identities=10% Similarity=0.146 Sum_probs=73.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++. +..+++|++...+..
T Consensus 21 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE--D--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred CceEEEEeeeEEEECC--c--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 3458999999999975 2 35779999999999999999999999999999999985 222578886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..+|++|+ ..++. .++.+|+.+...
T Consensus 97 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~eni~~~~~ 130 (271)
T PRK14238 97 SYSVEELRTNVGMVFQK-PNPFP--KSIYDNVTYGPK 130 (271)
T ss_pred cccHHHHhhhEEEEecC-Ccccc--ccHHHHHHHHHH
Confidence 12346677766 44443 489999987653
No 164
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.6e-16 Score=126.32 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=71.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeE
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVA 152 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~ 152 (189)
+|+++|+++.|+.......+++++||++++||+++|+|+||||||||+++|+|+.. ..+++|++...+.. .++..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEehHHHhhhce
Confidence 68999999999642111135789999999999999999999999999999999862 11678886443321 12345
Q ss_pred EEEecCCCCCCCCccChhhhHHHHH
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+++|+ ...++ .+++.+|+.+..
T Consensus 82 ~~~~q~-~~~~~-~~tv~~~l~~~~ 104 (192)
T cd03232 82 GYVEQQ-DVHSP-NLTVREALRFSA 104 (192)
T ss_pred EEeccc-Ccccc-CCcHHHHHHHHH
Confidence 666654 34454 389999998754
No 165
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4e-16 Score=133.34 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=72.6
Q ss_pred eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.|+++|+++.|+.... ...+++|+||+|++|++++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 3899999999974210 1236789999999999999999999999999999999998 899987443311
Q ss_pred ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+.. .++. .++.+|+.+...
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~ 112 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQ 112 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHH
Confidence 1234577787632 3332 589999987643
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=132.95 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=73.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 11 ~~~l~i~nl~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 11 NIIISLQNVTISYGT--F--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CceEEEEeEEEEECC--E--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 458999999999975 2 3578999999999999999999999999999999998621 1478886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. .++.+|+.+...
T Consensus 87 ~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~ 119 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQ-PNPFP--KSIYENIAFGAR 119 (269)
T ss_pred CCHHHHhhceEEEccC-Cccch--hhHHHHHhhhhh
Confidence 12345677765 44454 489999987653
No 167
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.66 E-value=4.4e-16 Score=144.31 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=83.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc-CCCceeeccCCCC-------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVK------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~-~p~~G~i~~~~~~------- 147 (189)
++|+++|+++.|......+.+|+||||+|.+||++||||+|||||||++++|.|+++.. ...+|++...+.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 48999999999975434467899999999999999999999999999999999999732 2347886333211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
+.+.+.++||+.+..+.+.+++.+.+......++
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~ 122 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc
Confidence 2345778899988888777888888888766544
No 168
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=4.5e-16 Score=144.98 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=74.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
+++|+++|+++.|+.. + .+++||||+|.+|++++|+|+||||||||+|+|+|+++ |++|.+.... ....++
T Consensus 4 ~~~l~i~~l~~~y~~~-~--~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~~ 74 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK-K--QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVGY 74 (556)
T ss_pred cEEEEEeeEEEEeCCC-C--eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence 4589999999999721 2 35779999999999999999999999999999999998 8999975432 134677
Q ss_pred EecCCCCCCCCccChhhhHHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++|+ ..+++ .+++.+|+.++.
T Consensus 75 v~Q~-~~~~~-~~tv~e~l~~~~ 95 (556)
T PRK11819 75 LPQE-PQLDP-EKTVRENVEEGV 95 (556)
T ss_pred EecC-CCCCC-CCcHHHHHHHhh
Confidence 7876 45555 489999998753
No 169
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=144.95 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=74.1
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++|+||+|.+||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 3 ~~i~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPG--V--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCC--e--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 57999999999975 2 35779999999999999999999999999999999998 899997443211
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..+++ .+++.+|+.+++
T Consensus 76 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~ 104 (501)
T PRK10762 76 SQEAGIGIIHQE-LNLIP-QLTIAENIFLGR 104 (501)
T ss_pred HHhCCEEEEEcc-hhccC-CCcHHHHhhhcc
Confidence 12345677765 45555 489999998754
No 170
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.8e-16 Score=124.73 Aligned_cols=88 Identities=26% Similarity=0.356 Sum_probs=68.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
++++|+++.|+. + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+.
T Consensus 1 l~~~~l~~~~~~--~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGK--K--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECC--e--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 468999999975 2 25779999999999999999999999999999999998 888987433211 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
..++++|+ ..++. .+++.+|+.
T Consensus 74 ~i~~~~q~-~~~~~-~~tv~~~~~ 95 (173)
T cd03230 74 RIGYLPEE-PSLYE-NLTVRENLK 95 (173)
T ss_pred cEEEEecC-Ccccc-CCcHHHHhh
Confidence 45677776 44444 378999863
No 171
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.7e-16 Score=129.91 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=71.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 2 NKFNIENLDLFYGE--N--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred CeEEEeccEEEECC--e--eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 57999999999975 2 3578999999999999999999999999999999998711 0247876433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+ ..++. .++.+|+.+...
T Consensus 78 ~~~~~~~i~~~~q~-~~~~~--~tv~~~l~~~~~ 108 (249)
T PRK14253 78 VADLRIKVGMVFQK-PNPFP--MSIYENVAYGLR 108 (249)
T ss_pred hHHHHhheeEEecC-CCcCc--ccHHHHHHhHHH
Confidence 12345677765 44443 689999987643
No 172
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.6e-16 Score=133.82 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=72.9
Q ss_pred CeEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
..|+++|+++.|+.... ...+++|+||+|.+||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence 45899999999975210 1236789999999999999999999999999999999998 888986432210
Q ss_pred ------CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+.. .++. .++.+|+.+...
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~ 117 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPV 117 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHH
Confidence 1234567777632 2332 589999987653
No 173
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.65 E-value=5.4e-16 Score=123.51 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=68.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~ 157 (189)
|+++|+++.|+.. + ..++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+ .+...+++|
T Consensus 1 i~~~~~~~~~~~~-~--~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~---~~~i~~~~q 71 (166)
T cd03223 1 IELENLSLATPDG-R--VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPE---GEDLLFLPQ 71 (166)
T ss_pred CEEEEEEEEcCCC-C--eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC---CceEEEECC
Confidence 4689999999642 2 25779999999999999999999999999999999998 8999975443 245667776
Q ss_pred CCCCCCCCccChhhhHHH
Q 029679 158 DGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 158 ~~~~l~~~~ltv~enl~~ 175 (189)
+.. ++ .+++.+|+.+
T Consensus 72 ~~~-~~--~~tv~~nl~~ 86 (166)
T cd03223 72 RPY-LP--LGTLREQLIY 86 (166)
T ss_pred CCc-cc--cccHHHHhhc
Confidence 633 33 3699999875
No 174
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7e-16 Score=129.43 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=71.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-----CceeeccCCCC----
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK---- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-----~~G~i~~~~~~---- 147 (189)
+|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+|+|+|+++ + ++|++...+..
T Consensus 4 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGD--K--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECC--E--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 6899999999975 2 35779999999999999999999999999999999986 4 36876433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .+++.+|+.+...
T Consensus 77 ~~~~~~~~~~i~~~~q~-~~~~~-~~t~~enl~~~~~ 111 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQK-PNPFP-TMSVFDNVVAGLK 111 (252)
T ss_pred ccCHHHhhceeEEEecc-CccCc-CCCHHHHHHHHHH
Confidence 12345677766 44554 3799999987553
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.3e-16 Score=129.34 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=71.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC-------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------- 147 (189)
.|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+++|+|++++ ..+++|++...+..
T Consensus 3 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGD--F--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECC--c--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 5899999999975 2 357799999999999999999999999999999998751 11267886433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. +++.+|+.+....
T Consensus 79 ~~~~~~~i~~~~q~-~~~~~--~t~~~ni~~~~~~ 110 (250)
T PRK14240 79 VNQLRKRVGMVFQQ-PNPFP--MSIYDNVAYGPRT 110 (250)
T ss_pred hHHHhccEEEEecC-CccCc--ccHHHHHHHHHHh
Confidence 12345677765 44443 6999999876543
No 176
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.65 E-value=6.2e-16 Score=125.90 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=73.1
Q ss_pred eEEEeeeEEEcCccc--eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC-----
Q 029679 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK----- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~----- 147 (189)
.|+++++++.|+... ....+++++||++.+||+++|+|+||||||||+++|+|++ + +.+|++...+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 589999999996410 0123678999999999999999999999999999999999 8 889987443321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++++ ..++. .+++.+|+.+..
T Consensus 80 ~~~~i~~~~q~-~~~~~-~~t~~~~i~~~~ 107 (194)
T cd03213 80 FRKIIGYVPQD-DILHP-TLTVRETLMFAA 107 (194)
T ss_pred hhheEEEccCc-ccCCC-CCcHHHHHHHHH
Confidence 23345667765 44454 389999998754
No 177
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.65 E-value=4.6e-16 Score=127.81 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=69.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
++++|+++.|+. .+.++||++.+||+++|+|+||||||||+|+|+|+++ +++|++...+.. .++.
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 478999999963 2359999999999999999999999999999999998 899987443321 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++++|+ ..++. .+++.+|+.+..
T Consensus 72 i~~v~q~-~~~~~-~~t~~en~~~~~ 95 (213)
T TIGR01277 72 VSMLFQE-NNLFA-HLTVRQNIGLGL 95 (213)
T ss_pred eEEEecc-CccCC-CCcHHHHHHhHh
Confidence 6677766 44554 379999998654
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=129.97 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|++ + .+++++||+|++||+++|+|+||||||||+++|+|++. +..+++|++...+..
T Consensus 19 ~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYYGE--K--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEeCC--c--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 458999999999975 2 35779999999999999999999999999999999863 112578886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+ ..++. .++.+|+.+...
T Consensus 95 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~ 127 (268)
T PRK14248 95 INVVNLRREIGMVFQK-PNPFP--KSIYNNITHALK 127 (268)
T ss_pred ccHHHHhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence 12345677765 44444 489999987643
No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.6e-16 Score=132.83 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
..+|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 5 ~~~l~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGK--Y--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECC--E--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 357999999999975 2 35779999999999999999999999999999999998 889987433321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+...+|++|+ ..++. .+++.+|+.+.
T Consensus 78 ~~~~~i~~v~q~-~~~~~-~~tv~~~~~~~ 105 (265)
T PRK10253 78 EVARRIGLLAQN-ATTPG-DITVQELVARG 105 (265)
T ss_pred HHhhheEEeecc-CcCCC-CCcHHHHHHhC
Confidence 12245677766 44444 37899998764
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.7e-16 Score=129.08 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=72.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC---
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK--- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~--- 147 (189)
++|+++|+++.|+. + .+++|+||+|.+|++++|+|+||||||||+++|+|+++ ++ +|.+...+..
T Consensus 3 ~~l~~~~l~~~~~~--~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHK--H--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECC--e--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 57999999999975 2 25779999999999999999999999999999999997 54 5776432211
Q ss_pred -------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..+++ .++.+|+.+....
T Consensus 76 ~~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~ 111 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQ-PNPFP--KSIFDNVAFGPRM 111 (251)
T ss_pred cccChHHhhceEEEEecC-CccCc--CcHHHHHhhHHHh
Confidence 13446777866 44554 4899999876543
No 181
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.4e-16 Score=129.47 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=70.2
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~ 150 (189)
+|+++|+++.|+.. .. +|||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. ...
T Consensus 1 ~l~~~~l~~~~~~~----~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL----PM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc----cc--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 48899999999741 22 8999999999999999999999999999999998 889987443321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
..++++|+ ..+++ .+++.+|+.+..
T Consensus 72 ~i~~~~q~-~~~~~-~~tv~e~l~~~~ 96 (232)
T PRK10771 72 PVSMLFQE-NNLFS-HLTVAQNIGLGL 96 (232)
T ss_pred cEEEEecc-ccccc-CCcHHHHHhccc
Confidence 45677765 44555 379999997653
No 182
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.65 E-value=1e-15 Score=129.10 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC----CceeeccCCCC-----
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVK----- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p----~~G~i~~~~~~----- 147 (189)
+|+++|+++.| + + ..++|+||++.+||+++|+|+||||||||+++|+|+++ + ++|++...+..
T Consensus 4 ~l~~~~l~~~~-~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-A--Q--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-c--c--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 3 2 25779999999999999999999999999999999998 6 88987443321
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..+|++|+....+...+++.+|+.+.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~ 106 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETC 106 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHH
Confidence 123467778774323333467777766543
No 183
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.2e-16 Score=144.19 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=73.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~------ 147 (189)
++|+++|+++.|++ + .+++||||+|.+||+++|+|+||||||||+|+|+|+++ + ++|.+...+..
T Consensus 4 ~~l~~~nl~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGG--V--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCC--e--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 58999999999975 2 35789999999999999999999999999999999997 5 68887443311
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..++. .+++.+|+.+.+
T Consensus 77 ~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~ 107 (506)
T PRK13549 77 RDTERAGIAIIHQE-LALVK-ELSVLENIFLGN 107 (506)
T ss_pred HHHHHCCeEEEEec-cccCC-CCcHHHHhhhcc
Confidence 12336777876 44555 489999998764
No 184
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=128.38 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=71.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + .+++++||+|.+||+++|+|+||||||||+++|+|+++ +..+++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 4 KIITSSDVHLFYGK--F--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred ceEEEEeEEEEECC--e--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 57999999999975 2 35779999999999999999999999999999999864 111257876433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..+++ .++.+|+.+....
T Consensus 80 ~~~~~~~~i~~~~q~-~~~~~--~tv~~nl~~~~~~ 112 (252)
T PRK14255 80 DVVQLRKQVGMVFQQ-PNPFP--FSIYENVIYGLRL 112 (252)
T ss_pred cHHHhcCeEEEEECC-CccCC--CcHHHHHHHHHHH
Confidence 12346677765 44443 5899999876543
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.65 E-value=3.8e-16 Score=130.55 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=61.5
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCcc
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQL 167 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~l 167 (189)
.+++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+.. .+...++++++...++. .+
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ 110 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW-DL 110 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCC-CC
Confidence 36889999999999999999999999999999999998 899987443321 12245566644344444 48
Q ss_pred ChhhhHHHHHHH
Q 029679 168 DAMEDPKEAHAR 179 (189)
Q Consensus 168 tv~enl~~~~~~ 179 (189)
++.+|+.+....
T Consensus 111 tv~e~l~~~~~~ 122 (236)
T cd03267 111 PVIDSFYLLAAI 122 (236)
T ss_pred cHHHHHHHHHHH
Confidence 999998876543
No 186
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.65 E-value=3.9e-16 Score=129.89 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=69.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+...+ .+++|+||++++||+++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 i~~~~l~~~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDGP--VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCCc--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 478999999964212 35779999999999999999999999999999999998 899987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
+..++++|+. .++. .++.+|+.+
T Consensus 76 ~~i~~~~q~~-~~~~--~tv~~nl~~ 98 (237)
T cd03252 76 RQVGVVLQEN-VLFN--RSIRDNIAL 98 (237)
T ss_pred hcEEEEcCCc-hhcc--chHHHHhhc
Confidence 3467777663 3442 689999876
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.65 E-value=3.8e-16 Score=133.89 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=69.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC--------ceeeccCCCC-
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVK- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~--------~G~i~~~~~~- 147 (189)
||+++|+++.|++ + .+++++||+|.+||+++|+|+||||||||+|+|+|+++ ++ +|++...+..
T Consensus 1 ml~~~nl~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRH--R--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECC--E--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 4899999999975 2 35679999999999999999999999999999999997 76 7886433311
Q ss_pred -------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+.. .+.. +++.+|+.+.
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~-~~~~-~tv~e~l~~~ 107 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQ-PAFA-FSAREIVLLG 107 (272)
T ss_pred ccCCHHHHHhhcEEecccCC-CCCC-CcHHHHHhhc
Confidence 1223567776633 2333 7899998774
No 188
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=131.34 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 36 ~~~~l~i~~l~~~~~~--~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 36 GETVIEARDLNVFYGD--E--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CCceEEEEEEEEEECC--E--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 4578999999999975 2 3577999999999999999999999999999999998621 1478886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++...+++|+ ..++. .++.+|+.+....
T Consensus 112 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~~ 146 (285)
T PRK14254 112 DVDPVALRRRIGMVFQK-PNPFP--KSIYDNVAYGLKI 146 (285)
T ss_pred ccchHhhhccEEEEecC-CccCc--CCHHHHHHHHHHH
Confidence 12345677766 34444 4899999876543
No 189
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.64 E-value=3.2e-16 Score=144.40 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=74.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP 149 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~ 149 (189)
.|+++||++.|+.. + ..|+|+||++++|+.++|+|+||||||||+++|+|+++ |++|++..++.+ .+
T Consensus 334 ~I~~~~vsf~Y~~~-~--~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGS-P--PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCC-C--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 59999999999753 2 25789999999999999999999999999999999999 999998554422 13
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
+..++++|+ ..++. .|+++|+.++
T Consensus 408 ~~i~~V~Q~-~~lF~--~TI~eNI~~g 431 (529)
T TIGR02868 408 RRISVFAQD-AHLFD--TTVRDNLRLG 431 (529)
T ss_pred hheEEEccC-ccccc--ccHHHHHhcc
Confidence 456788877 44554 5899999875
No 190
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.64 E-value=4.5e-16 Score=131.30 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=70.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|++ + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 2 l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGG--R--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 688999999975 2 35779999999999999999999999999999999998 899987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
....|++|+ ...+. .+++.+|+.+.
T Consensus 75 ~~i~~~~q~-~~~~~-~~tv~e~l~~~ 99 (256)
T TIGR03873 75 RRVALVEQD-SDTAV-PLTVRDVVALG 99 (256)
T ss_pred hheEEeccc-CccCC-CCCHHHHHHhc
Confidence 235677765 33333 37999999774
No 191
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4e-16 Score=133.01 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=69.5
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------- 147 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------- 147 (189)
.++++++.|+.. .+++|+||++.+|++++|+|+||||||||+++|+|+++ |++|.+...+..
T Consensus 26 ~~~~~~~~~~~~----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQT----VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCc----eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 456788888652 35779999999999999999999999999999999998 889987433211
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.....++++|+ ..+++ .+++.+|+.+.+.
T Consensus 99 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~ 128 (269)
T cd03294 99 LRRKKISMVFQS-FALLP-HRTVLENVAFGLE 128 (269)
T ss_pred hhcCcEEEEecC-cccCC-CCcHHHHHHHHHH
Confidence 02345677765 44554 3899999988654
No 192
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=128.34 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=71.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + ..++++||+|.+||+++|+|+||||||||+++|+|++.+ ..+++|++...+..
T Consensus 3 ~~l~~~~l~~~~~~--~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGN--Y--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 47999999999975 2 357799999999999999999999999999999999851 11367876432211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. .++.+|+.+...
T Consensus 79 ~~~~~~~~i~~~~q~-~~~~~--~tv~enl~~~~~ 110 (251)
T PRK14251 79 DLVELRKEVGMVFQQ-PTPFP--FSVYDNVAYGLK 110 (251)
T ss_pred hHHHhhccEEEEecC-CccCC--CcHHHHHHHHHH
Confidence 12345677765 44443 699999987654
No 193
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=5.9e-16 Score=126.70 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=69.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|++ + .. |+||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .++.
T Consensus 1 i~~~~l~~~~~~--~--~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE--Q--PM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCC--E--ec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 478999999975 2 12 9999999999999999999999999999999998 899987443321 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++++|+ ..+++ .+++.+|+.+..
T Consensus 72 i~~~~q~-~~~~~-~~tv~enl~~~~ 95 (211)
T cd03298 72 VSMLFQE-NNLFA-HLTVEQNVGLGL 95 (211)
T ss_pred EEEEecc-cccCC-CCcHHHHHhccc
Confidence 6677766 44554 379999998654
No 194
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.7e-16 Score=128.92 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|++ + .+++|+||++++||+++|+|+||||||||+++|+|++... .+++|++...+..
T Consensus 4 ~~~i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 4 EIILSTKNLNLWYGE--K--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred cceEEEeeeEEEECC--e--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 358999999999975 2 3577999999999999999999999999999999997511 1247876433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++++|+ ..++. .++.+|+.+....
T Consensus 80 ~~~~~~~~~i~~~~q~-~~~~~--~tv~eni~~~~~~ 113 (253)
T PRK14261 80 ADVVALRRKIGMVFQR-PNPFP--KSIYENVAYGPRI 113 (253)
T ss_pred cchhhhhceEEEEecC-CccCc--ccHHHHHHhhHHh
Confidence 12345677765 34444 4899999876543
No 195
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.64 E-value=5.4e-16 Score=128.15 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=73.3
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
..++|+++++++.|++.. ...+++++||+|++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH 83 (226)
T ss_pred cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence 346899999999997521 1236789999999999999999999999999999999998 899987544321
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+. .++. .++.+|+.+.
T Consensus 84 ~~~~~~i~~~~q~~-~l~~--~tv~~nl~~~ 111 (226)
T cd03248 84 KYLHSKVSLVGQEP-VLFA--RSLQDNIAYG 111 (226)
T ss_pred HHHHhhEEEEeccc-HHHh--hhHHHHhccc
Confidence 123456777663 4443 5888988754
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.9e-16 Score=137.19 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=70.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------- 147 (189)
||++ |++|.|++. .. |+||++++||+++|+|+||||||||+|+|+|+++ |++|.+...+..
T Consensus 1 ~l~~-~l~k~~~~~----~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDL----CL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCE----EE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 999999752 12 8999999999999999999999999999999998 899987433211
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..+|++|+ ..+++. +++.+|+.++.
T Consensus 71 ~~~~~~~i~~v~q~-~~l~~~-~tv~enl~~~~ 101 (352)
T PRK11144 71 LPPEKRRIGYVFQD-ARLFPH-YKVRGNLRYGM 101 (352)
T ss_pred cchhhCCEEEEcCC-cccCCC-CcHHHHHHhhh
Confidence 12345677765 566664 89999998764
No 197
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=130.13 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+++|+|++.+. .+++|++...+..
T Consensus 8 ~~~l~i~~v~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 8 ETVLRTENLNVYYGS--F--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred ceEEEEeeeEEEECC--E--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 458999999999975 2 3577999999999999999999999999999999998521 1367886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++. .++.+|+.+...
T Consensus 84 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~ 116 (264)
T PRK14243 84 VDPVEVRRRIGMVFQK-PNPFP--KSIYDNIAYGAR 116 (264)
T ss_pred cChHHHhhhEEEEccC-Ccccc--ccHHHHHHhhhh
Confidence 12345677765 44444 489999987653
No 198
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=6.9e-16 Score=130.54 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=73.7
Q ss_pred CeEEEeeeEEEcCcc--------------------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679 76 PVVEARCMDEVYDAL--------------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~--------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~ 135 (189)
++|+++||++.|.-. ...+++|+||||++.+||.+||||+||||||||+|+|+|.++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--- 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--- 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---
Confidence 568888888887311 124789999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCeEEEEe-cCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 136 PQKASSFDSQVKPPDVATVLP-MDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 136 p~~G~i~~~~~~~~~~~~vv~-~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
|++|.+...+.. ..++. -.+|+ + .+|.++|+.+.....|+.
T Consensus 79 Pt~G~v~v~G~v----~~li~lg~Gf~--p-elTGreNi~l~~~~~G~~ 120 (249)
T COG1134 79 PTSGKVKVTGKV----APLIELGAGFD--P-ELTGRENIYLRGLILGLT 120 (249)
T ss_pred CCCceEEEcceE----ehhhhcccCCC--c-ccchHHHHHHHHHHhCcc
Confidence 999997544321 11111 11222 2 589999999877666553
No 199
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.64 E-value=5.5e-16 Score=148.42 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=75.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.++++|++++|+.... ..|+|+||+|++||.+||||+||||||||+|+|+|++. |++|++..++.+ .
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 5999999999987422 45779999999999999999999999999999999999 999998554432 3
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+.+. |. -|+.||+.+.
T Consensus 546 R~~ig~V~Q~~~L-f~--gSI~eNi~l~ 570 (709)
T COG2274 546 RRQVGYVLQDPFL-FS--GSIRENIALG 570 (709)
T ss_pred HhheeEEcccchh-hc--CcHHHHHhcC
Confidence 5667888987443 32 5799988764
No 200
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.64 E-value=1.7e-16 Score=129.99 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=72.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~ 150 (189)
+|.+++|.+.|+.. +. ..+++|++||+++|+||||||||||+++|+|++. |++|.++.++.+ ..+
T Consensus 1 ~l~L~~V~~~y~~~--~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHL--PM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcc--eE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 46788999999763 11 6799999999999999999999999999999998 999998665533 233
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
-..+++|+ .++|.+ +||.+|+.+++
T Consensus 72 PVSmlFQE-nNLFaH-LtV~qNigLGl 96 (231)
T COG3840 72 PVSMLFQE-NNLFAH-LTVAQNIGLGL 96 (231)
T ss_pred Chhhhhhc-cccchh-hhhhhhhcccC
Confidence 44556654 788875 99999998865
No 201
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.9e-16 Score=129.47 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+... ..+++++||++++|++++|+|+||||||||+++|+|+++ |++|++...+.. .+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 47899999997521 235789999999999999999999999999999999998 899987543311 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
+..++++|+ ..++. .++.+|+.+.
T Consensus 76 ~~i~~~~q~-~~~~~--~tv~enl~~~ 99 (234)
T cd03251 76 RQIGLVSQD-VFLFN--DTVAENIAYG 99 (234)
T ss_pred hhEEEeCCC-Ceecc--ccHHHHhhcc
Confidence 345677766 34443 5899998764
No 202
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.64 E-value=5e-16 Score=138.62 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=66.6
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----C-------CCeEEEEecCCCCC
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-------PDVATVLPMDGFHL 162 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~-------~~~~~vv~~~~~~l 162 (189)
.+|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+.. . ++..+|++|+ +.+
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~-~~l 82 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ-FAL 82 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC-CcC
Confidence 36789999999999999999999999999999999999 999997543321 0 3456777765 667
Q ss_pred CCCccChhhhHHHHHHHcC
Q 029679 163 YLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 163 ~~~~ltv~enl~~~~~~~g 181 (189)
++. +|+.+|+.+.....+
T Consensus 83 ~~~-~TV~eNi~~~~~~~~ 100 (363)
T TIGR01186 83 FPH-MTILQNTSLGPELLG 100 (363)
T ss_pred CCC-CCHHHHHHHHHHHcC
Confidence 764 899999998776544
No 203
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.64 E-value=1.5e-16 Score=130.95 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCeEEEeeeEEEcCcc-----ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--
Q 029679 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-- 147 (189)
+++++++|++|.|... +..+.||+.|||++++|+++||+|+||||||||+|||+|+.+ |++|++..++..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 4679999999999531 234678999999999999999999999999999999999999 999997544422
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+...+.+++||.-..+.+.+.+-+-+..++++
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l 116 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL 116 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh
Confidence 23345566777544443345555555555543
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.1e-15 Score=127.53 Aligned_cols=92 Identities=13% Similarity=0.249 Sum_probs=71.9
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|+. . +++|+||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+..
T Consensus 1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468999999975 2 4789999999999999999999999999999999998 899986433211 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..+++++ ..++. .+++.+|+.+....
T Consensus 73 i~~~~q~-~~~~~-~~t~~e~l~~~~~~ 98 (235)
T cd03299 73 ISYVPQN-YALFP-HMTVYKNIAYGLKK 98 (235)
T ss_pred EEEEeec-CccCC-CccHHHHHHHHHHH
Confidence 5677765 44554 38999999876543
No 205
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.5e-16 Score=131.38 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 19 ~~~l~i~nl~~~~~~--~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 19 APAMAAVNLTLGFAG--K--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred CcEEEEeeEEEEECC--E--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 468999999999975 2 3567999999999999999999999999999999998721 0257886433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+....|++|+ ..+++ +++.+|+.+..
T Consensus 95 ~~~~~~~~i~~v~q~-~~l~~--~tv~eni~~~~ 125 (276)
T PRK14271 95 DVLEFRRRVGMLFQR-PNPFP--MSIMDNVLAGV 125 (276)
T ss_pred hhHHHhhheEEeccC-CccCC--ccHHHHHHHHH
Confidence 12345677765 44444 68999998764
No 206
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=129.44 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=73.0
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC------CCC
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS------QVK 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~------~~~ 147 (189)
..|+|+++++++.|++. .+++||||++.+||+++|+|+||||||||+++|+|++. +++|++... +..
T Consensus 7 ~~~~i~~~~~~~~~~~~----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 7 AEDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred hhhheeeeeEEEecCCc----eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCcc
Confidence 34689999999999762 35779999999999999999999999999999999998 777654211 111
Q ss_pred --------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++++ ..+++ .+++.+|+.+...
T Consensus 80 ~~~~~~~~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~~ 116 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQ-PNPFP-HLSIYDNIAYPLK 116 (257)
T ss_pred cccCCHHHHhcceEEEccC-CccCC-CCcHHHHHHHHHH
Confidence 12345677765 34444 3799999988654
No 207
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=7.9e-16 Score=141.91 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------ 147 (189)
..++|+++|+++.|++ + .+++|+||+|.+|++++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 8 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSG--V--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCC--c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 3458999999999975 2 35779999999999999999999999999999999998 899997443311
Q ss_pred ---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+...++++|+ ..++. .+++.+|+.+.
T Consensus 81 ~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~ 110 (510)
T PRK15439 81 AKAHQLGIYLVPQE-PLLFP-NLSVKENILFG 110 (510)
T ss_pred HHHHhCCEEEEecc-CccCC-CCcHHHHhhcc
Confidence 11235677766 44555 48999998764
No 208
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.9e-16 Score=124.63 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=67.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
|+++|+++.|+. + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 1 i~~~~l~~~~~~--~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQ--K--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECC--e--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 478999999975 2 35779999999999999999999999999999999998 889987432211
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
.+....+++++ ...+. .+++.+|+.
T Consensus 74 ~~~~i~~~~q~-~~~~~-~~t~~~~l~ 98 (178)
T cd03229 74 LRRRIGMVFQD-FALFP-HLTVLENIA 98 (178)
T ss_pred HhhcEEEEecC-CccCC-CCCHHHhee
Confidence 12345667765 33444 378888865
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.7e-16 Score=142.52 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=72.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++||||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGP--V--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 58999999999975 2 35779999999999999999999999999999999998 899987443311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+...++++|+ ..++. .+++.+|+.+.
T Consensus 77 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~ 104 (510)
T PRK09700 77 AAQLGIGIIYQE-LSVID-ELTVLENLYIG 104 (510)
T ss_pred HHHCCeEEEeec-ccccC-CCcHHHHhhhc
Confidence 11235677765 44444 48999998764
No 210
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.64 E-value=1.1e-15 Score=126.59 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=73.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV 151 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~ 151 (189)
++.++|+++.|++......+++|+||++++||+++|+|+||||||||+++|+|+++..-+++|.+...+.. .++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 57899999999653112346789999999999999999999999999999999985211477876433321 2334
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++++|+ ..++. .+++.+|+.+...
T Consensus 83 i~~~~q~-~~~~~-~~tv~enl~~~~~ 107 (226)
T cd03234 83 VAYVRQD-DILLP-GLTVRETLTYTAI 107 (226)
T ss_pred EEEeCCC-CccCc-CCcHHHHHHHHHH
Confidence 5677765 44554 4899999988654
No 211
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=7.3e-16 Score=126.83 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=69.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+...+ .+++|+||++++|++++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 3 l~~~~l~~~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNLP--PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCCc--ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 789999999975212 35789999999999999999999999999999999998 889987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
+..++++|+. .++. .++.+|+.
T Consensus 78 ~~i~~~~q~~-~l~~--~tv~enl~ 99 (221)
T cd03244 78 SRISIIPQDP-VLFS--GTIRSNLD 99 (221)
T ss_pred hhEEEECCCC-cccc--chHHHHhC
Confidence 3466777663 3443 58888875
No 212
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=9e-16 Score=125.42 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=71.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
..|+++++++.|+...+ .+++++||+|++|++++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 46999999999975211 36789999999999999999999999999999999998 899987543321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
.+...++++|+. .++. .++.+|+.+
T Consensus 80 ~~~~i~~v~q~~-~~~~--~tv~~~l~~ 104 (207)
T cd03369 80 LRSSLTIIPQDP-TLFS--GTIRSNLDP 104 (207)
T ss_pred HHhhEEEEecCC-cccC--ccHHHHhcc
Confidence 123467777763 4443 589998854
No 213
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.63 E-value=1.1e-15 Score=129.52 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=66.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv 155 (189)
++|+++|+++.|++ + ..++++||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+ ....+++
T Consensus 3 ~~l~~~~l~~~~~~--~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~---~~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQ--R--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNG---KLRIGYV 72 (251)
T ss_pred cEEEEeceEEEECC--c--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC---ccCEEEe
Confidence 48999999999975 2 25779999999999999999999999999999999998 9999975443 2236667
Q ss_pred ecCCCCCCCC-ccChhhhH
Q 029679 156 PMDGFHLYLS-QLDAMEDP 173 (189)
Q Consensus 156 ~~~~~~l~~~-~ltv~enl 173 (189)
+|+ ..++.. ..++.+++
T Consensus 73 ~q~-~~~~~~l~~~~~~~~ 90 (251)
T PRK09544 73 PQK-LYLDTTLPLTVNRFL 90 (251)
T ss_pred ccc-cccccccChhHHHHH
Confidence 765 333322 13555554
No 214
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.6e-16 Score=141.94 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
++|+++|+++.|++ + .+++|+||++++||+++|+|+||||||||+|+|+|+++ |++|.+...+..
T Consensus 3 ~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPG--V--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECC--E--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 58999999999975 2 35779999999999999999999999999999999998 899987543311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..+++ .+++.+|+.++.
T Consensus 76 ~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~ 104 (501)
T PRK11288 76 ALAAGVAIIYQE-LHLVP-EMTVAENLYLGQ 104 (501)
T ss_pred HHhCCEEEEEec-hhccC-CCCHHHHHHhcc
Confidence 12345677765 44554 489999998753
No 215
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=128.32 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~----- 147 (189)
+++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+|+|+|++++..+ ++|++...+..
T Consensus 5 ~~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 5 IPAIKVKDLSFYYNT--S--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred cceEEEEEEEEEECC--e--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 357999999999975 2 357799999999999999999999999999999999862101 47876433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. +++.+|+.+...
T Consensus 81 ~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~ 113 (259)
T PRK14260 81 ININRLRRQIGMVFQR-PNPFP--MSIYENVAYGVR 113 (259)
T ss_pred cchHhhhhheEEEecc-cccCC--ccHHHHHHHHHH
Confidence 12245677765 34443 799999987643
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.63 E-value=7.6e-16 Score=123.00 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=67.1
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+... ..+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 47899999997521 236779999999999999999999999999999999998 889987443311 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
....+++|+ ..+++ .++.+|+
T Consensus 76 ~~i~~~~q~-~~~~~--~tv~~~l 96 (173)
T cd03246 76 DHVGYLPQD-DELFS--GSIAENI 96 (173)
T ss_pred hheEEECCC-Ccccc--CcHHHHC
Confidence 345677765 34443 4888874
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=128.67 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|++ + ..++|+||+|++||+++|+|+||||||||+++|+|++++. .+++|++...+..
T Consensus 22 ~~~~l~~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--K--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CCcEEEEEEEEEEECC--e--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 3468999999999975 2 2567999999999999999999999999999999998610 1378886432211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+....|++|+ ..++. .++.+|+.+...
T Consensus 98 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~ 131 (272)
T PRK14236 98 KVDVAELRRRVGMVFQR-PNPFP--KSIYENVVYGLR 131 (272)
T ss_pred ccCHHHHhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence 12345677765 44554 389999987654
No 218
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=1.5e-15 Score=141.38 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=73.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv 155 (189)
.+|+++|+++.|++. + .+++|+||+|.+|++++|+|+||||||||+|+|+|+++ |++|.+.... ....+++
T Consensus 3 ~~i~~~nls~~~~~~-~--~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~v 73 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK-K--EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGYL 73 (552)
T ss_pred EEEEEeeEEEecCCC-C--eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEEE
Confidence 479999999999721 2 35779999999999999999999999999999999998 8999875432 2346777
Q ss_pred ecCCCCCCCCccChhhhHHHHH
Q 029679 156 PMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 156 ~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+|+ ..++. .+|+.+|+.+++
T Consensus 74 ~Q~-~~~~~-~~tv~e~i~~~~ 93 (552)
T TIGR03719 74 PQE-PQLDP-TKTVRENVEEGV 93 (552)
T ss_pred ecc-CCCCC-CCcHHHHHHHhh
Confidence 765 44554 489999998753
No 219
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=3.8e-17 Score=135.37 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=80.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
+.+|.++|+.|+|+. + .++++|||++++||++||.||||+||||.+-|+.||.+ +++|.+...+.+
T Consensus 2 ~~~L~a~~l~K~y~k--r--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKK--R--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCC--e--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 457999999999987 3 34679999999999999999999999999999999999 999997544332
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.+--.+|+||+ ...|.. +||.+|+...+..+.
T Consensus 75 ~RArlGigYLpQE-~SIFr~-LtV~dNi~~vlE~~~ 108 (243)
T COG1137 75 KRARLGIGYLPQE-ASIFRK-LTVEDNIMAVLEIRE 108 (243)
T ss_pred HHhhcCccccccc-chHhhc-CcHHHHHHHHHhhhh
Confidence 12235778865 667764 999999998887654
No 220
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=127.08 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|+.....+ ++|++...+..
T Consensus 2 ~~l~~~~~~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGD--F--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECC--E--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 57999999999975 2 357799999999999999999999999999999998421113 47886433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...+|++|+ ..++. .++.+|+.+....
T Consensus 78 ~~~~~~~~i~~v~q~-~~~~~--~tv~~nl~~~~~~ 110 (250)
T PRK14245 78 QVDELRKNVGMVFQR-PNPFP--KSIFENVAYGLRV 110 (250)
T ss_pred cHHHHhhheEEEecC-CccCc--ccHHHHHHHHHHH
Confidence 12246777766 34443 5899999876543
No 221
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.63 E-value=8.4e-16 Score=126.38 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=69.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+... ..+++|+||+|++|++++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999996421 235779999999999999999999999999999999998 889987543321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
...++++|+ ..++. .++.+|+.+
T Consensus 78 ~~i~~~~q~-~~~~~--~tv~e~l~~ 100 (220)
T cd03245 78 RNIGYVPQD-VTLFY--GTLRDNITL 100 (220)
T ss_pred hhEEEeCCC-Ccccc--chHHHHhhc
Confidence 345677766 34443 588888765
No 222
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.63 E-value=6.4e-16 Score=133.89 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCcc
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQL 167 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~l 167 (189)
.+|+||||+|++||++||+|+||||||||+|+|+|+++ |++|++...+.. .++..++++|+ ..+++ .+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~-~~~~~-~~ 81 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQY-ASVDE-DL 81 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecCC-CCCCC-CC
Confidence 36789999999999999999999999999999999998 999997543321 12346777765 45555 48
Q ss_pred ChhhhHHHHHHHcC
Q 029679 168 DAMEDPKEAHARRG 181 (189)
Q Consensus 168 tv~enl~~~~~~~g 181 (189)
++.+|+.+.....+
T Consensus 82 tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 82 TGRENLEMMGRLYG 95 (302)
T ss_pred cHHHHHHHHHHHcC
Confidence 99999988655443
No 223
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8e-16 Score=122.66 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=67.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|++.. ..+++++||++++|++++|+|+||||||||+|+|+|+++ +.+|++...+.. .+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 47899999997521 235789999999999999999999999999999999998 888987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
...++++++. .++. .++.+|+
T Consensus 76 ~~i~~~~~~~-~~~~--~t~~e~l 96 (171)
T cd03228 76 KNIAYVPQDP-FLFS--GTIRENI 96 (171)
T ss_pred hhEEEEcCCc-hhcc--chHHHHh
Confidence 2456677663 4443 5888884
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.63 E-value=5.6e-16 Score=128.99 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=69.2
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|+... ...+++|+||++++||+++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 47899999996421 1236789999999999999999999999999999999998 899987443321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
...++++|+ ..++. .++.+|+.+.
T Consensus 77 ~~i~~~~q~-~~~~~--~tv~e~l~~~ 100 (238)
T cd03249 77 SQIGLVSQE-PVLFD--GTIAENIRYG 100 (238)
T ss_pred hhEEEECCc-hhhhh--hhHHHHhhcc
Confidence 345677765 33332 5888888653
No 225
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=140.32 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=71.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~ 156 (189)
||+++|+++.|++ + .+++|+||+|.+||+++|+|+||||||||+|+|+|+++ |++|.+...+. ...++++
T Consensus 1 ml~i~~ls~~~~~--~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGA--K--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCC--c--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 4899999999975 2 35779999999999999999999999999999999998 88999754321 2356777
Q ss_pred cCCCCCCCCccChhhhHHHH
Q 029679 157 MDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 157 ~~~~~l~~~~ltv~enl~~~ 176 (189)
|+ ..++. .+++.+|+.++
T Consensus 71 q~-~~~~~-~~tv~e~l~~~ 88 (530)
T PRK15064 71 QD-QFAFE-EFTVLDTVIMG 88 (530)
T ss_pred cc-CCcCC-CCcHHHHHHHh
Confidence 65 44444 48999998864
No 226
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.62 E-value=7.1e-16 Score=123.56 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD 150 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~ 150 (189)
|+++|+++.|+...+ .+++|+||++++||+++|+|+||||||||+|+|+|+++ +++|++...+.. .++
T Consensus 1 i~~~~~~~~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQEQ--QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCCc--cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 478999999965211 25779999999999999999999999999999999998 889987544321 123
Q ss_pred eEEEEecCCCCCCCCccChhhhH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl 173 (189)
..++++++ ..++. .++.+|+
T Consensus 76 ~i~~~~q~-~~~~~--~tv~~~i 95 (178)
T cd03247 76 LISVLNQR-PYLFD--TTLRNNL 95 (178)
T ss_pred hEEEEccC-Ceeec--ccHHHhh
Confidence 45677765 34443 5888875
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.1e-15 Score=129.04 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=72.0
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+++++||+|.+||+++|+|+||||||||+++|+|++.+. .+++|.+...+..
T Consensus 17 ~~~~l~~~nl~~~~~~--~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG--F--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CCceEEEeeEEEEeCC--e--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 4468999999999975 2 3577999999999999999999999999999999998521 1257876433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...+|++|+ ..++. .++.+|+.+..
T Consensus 93 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~~nl~~~~ 125 (274)
T PRK14265 93 QINSVKLRRQVGMVFQR-PNPFP--KSIYENIAFAP 125 (274)
T ss_pred cchhHHHhhcEEEEccC-Ccccc--ccHHHHHHhHH
Confidence 12345677766 34443 48999998754
No 228
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.7e-16 Score=127.00 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=69.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|+.. + ..++|+||++.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 2 ~l~~~~l~~~~~~~-~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNFSYDEK-K--PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEEecCCC-C--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 37899999999642 1 25779999999999999999999999999999999998 899987544321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..+|++++ ..++. .++.+|+.+.
T Consensus 76 ~~~i~~~~q~-~~~~~--~tv~~~~~~~ 100 (229)
T cd03254 76 RSMIGVVLQD-TFLFS--GTIMENIRLG 100 (229)
T ss_pred hhhEEEecCC-chhhh--hHHHHHHhcc
Confidence 2345677765 34443 4788887653
No 229
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=2e-15 Score=125.65 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=71.7
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|+. + ..++++||++.+|++++|+|+||||||||+++|+|+++ +.+|.+...+.. .+..
T Consensus 1 l~~~~l~~~~~~--~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG--F--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCC--e--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 468999999975 2 35779999999999999999999999999999999998 888986443221 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++++++ ...+. .+++.+|+.+...
T Consensus 74 i~~~~q~-~~~~~-~~t~~~nl~~~~~ 98 (232)
T cd03300 74 VNTVFQN-YALFP-HLTVFENIAFGLR 98 (232)
T ss_pred eEEEecc-cccCC-CCcHHHHHHHHHH
Confidence 6677765 44444 3799999987654
No 230
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.62 E-value=2.1e-15 Score=126.49 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHh--hcccCCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl--~~~~~p~~G~i~~~~~~----- 147 (189)
.++|+++++++.|++ + .++++|||++++||+++|+|+||||||||+++|+|+ ++ +++|++...+..
T Consensus 5 ~~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 5 KPILEIKNLHASVNE--N--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE 77 (252)
T ss_pred CceEEEEeEEEEeCC--E--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence 357999999999975 2 367899999999999999999999999999999998 45 788886433211
Q ss_pred ---CCC-eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ---PPD-VATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ---~~~-~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
... ...+++|+ ..+++ .+++.+|+.+..
T Consensus 78 ~~~~~~~~~~~~~q~-~~~~~-~~~~~~~l~~~~ 109 (252)
T CHL00131 78 PEERAHLGIFLAFQY-PIEIP-GVSNADFLRLAY 109 (252)
T ss_pred hhhhheeeEEEEecc-ccccc-cccHHHHHHHhh
Confidence 111 23455654 44444 367888876543
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.5e-15 Score=129.44 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + ..++|+||+|.+||+++|+|+||||||||+++|+|+.. +..+++|++...+..
T Consensus 36 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--F--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 4568999999999975 2 25679999999999999999999999999999999863 111378886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+ ..++. .++.+|+.+...
T Consensus 112 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~ 145 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQK-PNPFP--KSIFDNIAYGPR 145 (286)
T ss_pred ccchHHhhhcEEEECCC-CCCCc--cCHHHHHHhHHH
Confidence 12346677766 34443 499999988654
No 232
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.62 E-value=6.3e-16 Score=146.83 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=74.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+...+ .+|+|+||+|++||.++|+|+||||||||+|+|+|++. |++|++..++.. .
T Consensus 451 ~I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCCc--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 5999999999964222 35779999999999999999999999999999999999 999997544422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|++||+.++
T Consensus 526 r~~i~~v~Q~-~~lf~--gTI~eNi~~~ 550 (686)
T TIGR03797 526 RRQLGVVLQN-GRLMS--GSIFENIAGG 550 (686)
T ss_pred HhccEEEccC-CccCc--ccHHHHHhcC
Confidence 3457888877 44554 5899999764
No 233
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.62 E-value=1.6e-15 Score=134.49 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=67.4
Q ss_pred eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------CC
Q 029679 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------~~ 149 (189)
|+++.|++ . .+ ++||++.+||+++|+|+||||||||+|+|+|+++ |++|++...+.. .+
T Consensus 4 ~l~~~~~~--~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGD--F---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECC--E---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 79999975 2 23 8999999999999999999999999999999998 899986432211 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+..++++|+ ..+++. +++.+|+.+++.
T Consensus 75 ~~i~~v~q~-~~l~~~-~tv~enl~~~~~ 101 (354)
T TIGR02142 75 RRIGYVFQE-ARLFPH-LSVRGNLRYGMK 101 (354)
T ss_pred CCeEEEecC-CccCCC-CcHHHHHHHHhh
Confidence 345677765 566664 899999988653
No 234
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.62 E-value=2.3e-15 Score=125.78 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=72.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV 151 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~ 151 (189)
|+++|+++.|+. + ..++|+||++.+||+++|+|+||||||||+++|+|+++ +++|++...+.. .++.
T Consensus 1 i~i~~l~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS--F--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECC--e--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 478999999975 3 35779999999999999999999999999999999998 889986433211 1234
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
..+++++ ...+. .+++.+|+.+....
T Consensus 74 i~~~~q~-~~~~~-~~t~~enl~~~~~~ 99 (237)
T TIGR00968 74 IGFVFQH-YALFK-HLTVRDNIAFGLEI 99 (237)
T ss_pred EEEEecC-hhhcc-CCcHHHHHHhHHHh
Confidence 5677765 44554 37999999876543
No 235
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=4.3e-16 Score=136.35 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred CeEEEeeeEEEcCccc--------------------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679 76 PVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~--------------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~ 135 (189)
..|+++|++|.|+... ..+..|+|+||+|++|||+.|.|-||||||||+|+|.+|.+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 4589999999996420 12456889999999999999999999999999999999999
Q ss_pred CCceeeccCCCC------------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 136 p~~G~i~~~~~~------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
|+.|.+...+.+ +++...++|| .|.++++ .||.+|..|++..+|.+.
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ-~FaLlPh-rtVl~Nv~fGLev~Gv~~ 138 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ-SFALLPH-RTVLENVAFGLEVQGVPK 138 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh-hhccccc-hhHhhhhhcceeecCCCH
Confidence 999997544332 2344556665 5999984 999999999998888764
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4e-15 Score=126.50 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=73.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
.+.+.++++++.|+. . .+++|+||++++||+++|+|+||||||||+++|+|++++. .+.+|++...+..
T Consensus 6 ~~~~~~~~~~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 6 PIVMDCKLDKIFYGN--F--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred CceEEEEeEEEEeCC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 357999999999975 2 3577999999999999999999999999999999999721 1268886433211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++..++++|+ ..++ . +++.+|+.+...
T Consensus 82 ~~~~~~~~~i~~v~q~-~~~~-~-~tv~enl~~~~~ 114 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQ-PNPF-S-MSIFDNVAFGLR 114 (261)
T ss_pred cchHhhhhceEEEecC-Cccc-c-ccHHHHHHHHHh
Confidence 12346777766 3444 2 899999987654
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=124.90 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=71.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------ 147 (189)
-+|+++|+++.|++ + .+++|+||+|.+||+++|+|+||||||||+++|+|++. +..+++|++...+..
T Consensus 2 ~~l~~~~v~~~~~~--~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 2 YRIEVENLNTYFDD--A--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred cEEEEEeEEEEeCC--e--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 46899999999975 2 25779999999999999999999999999999999874 112478886433211
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++|+ ..++. .++.+|+.+...
T Consensus 78 ~~~~~~~~i~~~~q~-~~~~~--~t~~~nl~~~~~ 109 (250)
T PRK14266 78 DVVELRKKVGMVFQK-PNPFP--KSIFDNVAYGLR 109 (250)
T ss_pred cHHHHhhheEEEecC-CccCc--chHHHHHHhHHh
Confidence 12346777866 34444 489999987643
No 238
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.6e-15 Score=126.39 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=70.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC---
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK--- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~--- 147 (189)
++|+++|+++.|+. + .+++|+||++++||+++|+|+||||||||+++|+|+++ ++ +|.+...+..
T Consensus 6 ~~l~~~nl~~~~~~--~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDT--Q--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCC--e--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 47999999999975 2 35779999999999999999999999999999999997 53 5665322211
Q ss_pred -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+....+++++ ..+++ +++.+|+.+...
T Consensus 79 ~~~~~~~~~~~i~~~~q~-~~l~~--~tv~enl~~~~~ 113 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPK-PNLFP--MSVYDNVAYGVK 113 (261)
T ss_pred cccchHHhhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence 12335666765 34443 689999987643
No 239
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.7e-15 Score=125.84 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC--CCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~--p~~G~i~~~~~~----- 147 (189)
..+|+++|+++.|+. + .+++|+||+|++||+++|+|+||||||||+++|+|++.+.- +++|++...+..
T Consensus 14 ~~~l~~~~l~~~~~~--~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--Y--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CceEEEEEEEEEECC--e--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 357999999999975 2 35779999999999999999999999999999999986210 167876332110
Q ss_pred -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...++++++ ..++. .++.+|+.+...
T Consensus 90 ~~~~~~~~~~~i~~~~q~-~~~~~--~tv~eni~~~~~ 124 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQK-PNPFP--KSIFENVAYGLR 124 (265)
T ss_pred cccCHHHHhccEEEEccC-CcCCc--chHHHHHHhHHH
Confidence 12345677765 44444 489999987654
No 240
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-15 Score=143.06 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=78.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
-.|+++||++.|+.. ..+..++|+||+|++||++|||||||+||||++.+|..++. |++|+|...+.+
T Consensus 464 G~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY 539 (716)
T ss_pred ceEEEEEeeeecCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence 369999999999874 34567889999999999999999999999999999999999 999998554432
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.++.+++|.|+ .-+|. -++.|||.++..
T Consensus 540 lr~~Ig~V~QE-PvLFs--~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 540 LRRKIGLVGQE-PVLFS--GSIRENIAYGLD 567 (716)
T ss_pred HHHHeeeeecc-ceeec--ccHHHHHhcCCC
Confidence 24566777765 55554 589999988653
No 241
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.60 E-value=3.1e-15 Score=139.43 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
.++|+++|+++.|++ + .+++||||+|.+||+++|+|+||||||||+|+|+|+++ |++|++..+.. ...+|
T Consensus 322 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~ 391 (556)
T PRK11819 322 DKVIEAENLSKSFGD--R--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY 391 (556)
T ss_pred CeEEEEEeEEEEECC--e--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence 458999999999975 2 35779999999999999999999999999999999998 99999865321 13677
Q ss_pred EecCCCCCCCCccChhhhHHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++|+...++. .+++.+|+.+..
T Consensus 392 v~q~~~~~~~-~~tv~e~l~~~~ 413 (556)
T PRK11819 392 VDQSRDALDP-NKTVWEEISGGL 413 (556)
T ss_pred EeCchhhcCC-CCCHHHHHHhhc
Confidence 7876323444 489999998754
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.8e-15 Score=125.66 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=69.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|++. + ..++|+||+|.+|++++|+|+||||||||+++|+|+++ +++|++...+.. .+
T Consensus 1 l~~~~l~~~~~~~-~--~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDPG-R--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCCC-C--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence 4789999999632 2 25779999999999999999999999999999999998 899987543321 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
+..++++++ ..++. .++.+|+.+.
T Consensus 75 ~~i~~~~q~-~~~~~--~tv~~nl~~~ 98 (236)
T cd03253 75 RAIGVVPQD-TVLFN--DTIGYNIRYG 98 (236)
T ss_pred hhEEEECCC-Chhhc--chHHHHHhhc
Confidence 345677766 34443 5899998764
No 243
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.60 E-value=1.2e-15 Score=145.36 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=74.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+...+ .+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|++..++.. .
T Consensus 477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 5999999999975322 35789999999999999999999999999999999999 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|++||+.+.
T Consensus 552 r~~i~~v~Q~-~~lf~--gTi~eNi~l~ 576 (710)
T TIGR03796 552 ANSVAMVDQD-IFLFE--GTVRDNLTLW 576 (710)
T ss_pred HhheeEEecC-Chhhh--ccHHHHhhCC
Confidence 4567888877 44453 5899999753
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.60 E-value=2e-15 Score=138.51 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=71.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC-------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~------- 147 (189)
+|+++|+++.|++ + .+++||||++.+||+++|+|+||||||||+++|+|+++ + ++|.+...+..
T Consensus 1 ~l~i~~l~~~~~~--~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGG--V--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCC--e--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 4899999999975 2 35779999999999999999999999999999999987 5 68887443211
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...++++|+ ..++. .+++.+|+.+..
T Consensus 74 ~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~ 103 (500)
T TIGR02633 74 DTERAGIVIIHQE-LTLVP-ELSVAENIFLGN 103 (500)
T ss_pred HHHhCCEEEEeec-cccCC-CCcHHHHHHhhc
Confidence 12336777776 34554 489999988754
No 245
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.60 E-value=3.4e-15 Score=138.90 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
.++|+++|+++.|++ + ..++|+||+|.+|++++|+|+||||||||+++|+|+++ |++|.+..+.. ...+|
T Consensus 320 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGFGD--K--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY 389 (552)
T ss_pred CeEEEEeeEEEEECC--e--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence 468999999999975 2 35779999999999999999999999999999999998 89999855321 13677
Q ss_pred EecCCCCCCCCccChhhhHHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++|+...+++ .+++.+|+.+..
T Consensus 390 v~q~~~~~~~-~~tv~e~l~~~~ 411 (552)
T TIGR03719 390 VDQSRDALDP-NKTVWEEISGGL 411 (552)
T ss_pred EeCCccccCC-CCcHHHHHHhhc
Confidence 7876323444 489999998754
No 246
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=3.2e-15 Score=138.24 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=72.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------ 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------ 147 (189)
++|+++|+++.|+.......+++||||+|.+||+++|+|+||||||||+|+|+|++++ ..+++|++...+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 5899999999996311112467899999999999999999999999999999999972 11268886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+....++++|+....+...+++.+|+.+..
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~ 119 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL 119 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHH
Confidence 113467888764321222367888876543
No 247
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=3e-15 Score=138.03 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=71.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccC-----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS----------- 144 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~----------- 144 (189)
|+++|+++.|++ + .+++|+||++.+|++++|+|+||||||||+|+|+|++ + |++|++...
T Consensus 1 l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDG--K--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECC--e--EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 578999999965 2 3577999999999999999999999999999999996 5 778886321
Q ss_pred ------------CC------------C------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 145 ------------QV------------K------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 145 ------------~~------------~------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
+. . .++..++++|+...++. .+++++|+.+.+...
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~ 138 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEI 138 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHc
Confidence 10 0 12235777775345555 379999998866443
No 248
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=4.7e-15 Score=140.31 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
..++|+++|+++.|++ + ..++|+||+|.+|++++|+|+||||||||+|+|+|+++ |++|.+..+.. -..+
T Consensus 316 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~ 385 (635)
T PRK11147 316 GKIVFEMENVNYQIDG--K--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVA 385 (635)
T ss_pred CCceEEEeeeEEEECC--e--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEE
Confidence 3468999999999975 2 25679999999999999999999999999999999998 99999865321 1356
Q ss_pred EEecCCCCCCCCccChhhhHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
|++|+...+++ .+++.+|+.+.
T Consensus 386 y~~q~~~~l~~-~~tv~e~l~~~ 407 (635)
T PRK11147 386 YFDQHRAELDP-EKTVMDNLAEG 407 (635)
T ss_pred EEeCcccccCC-CCCHHHHHHhh
Confidence 67765333444 48999998764
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.7e-15 Score=128.03 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=60.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV 151 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~ 151 (189)
+|+++|+++.|++. + .+++|+||+|.+||+++|+|+||||||||+|+|+|+++ |++|++...+.. ....
T Consensus 6 ~l~~~~l~~~~~~~-~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNG-H--TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCC-c--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence 69999999999632 2 25679999999999999999999999999999999998 899987443321 1234
Q ss_pred EEEEecC
Q 029679 152 ATVLPMD 158 (189)
Q Consensus 152 ~~vv~~~ 158 (189)
.+|++|+
T Consensus 80 i~~v~q~ 86 (272)
T PRK15056 80 VAYVPQS 86 (272)
T ss_pred EEEeccc
Confidence 5677765
No 250
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.9e-15 Score=137.06 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=71.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv 155 (189)
++|+++|+++.|++ + .+++++||+|++||+++|+|+||||||||+|+|+|+++ |++|.+...+ ....+|+
T Consensus 318 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGFDN--G--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSE---NANIGYY 387 (530)
T ss_pred ceEEEEeeEEeeCC--c--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC---ceEEEEE
Confidence 58999999999975 2 25679999999999999999999999999999999998 9999975433 2346777
Q ss_pred ecCCCCCCCCccChhhhHHH
Q 029679 156 PMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 156 ~~~~~~l~~~~ltv~enl~~ 175 (189)
+|+....+...+++.+|+.+
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~ 407 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQ 407 (530)
T ss_pred cccccccCCCCCcHHHHHHH
Confidence 77633223334788888754
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=3.5e-15 Score=137.65 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=74.5
Q ss_pred CCCeEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc--CCC----
Q 029679 74 EIPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQV---- 146 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~--~~~---- 146 (189)
..++|+++|+++.|+.. .....+++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++.. +..
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCccccc
Confidence 34689999999999531 011235789999999999999999999999999999999998 88999743 221
Q ss_pred C---------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 147 K---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 147 ~---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
. .+...+|++|+ ..+++ .+++.+|+.+.+
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~-~~l~~-~~tv~e~l~~~~ 390 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQE-YDLYP-HRTVLDNLTEAI 390 (520)
T ss_pred cccchhhHHHHhhhEEEEccC-cccCC-CCcHHHHHHHHH
Confidence 0 01235677765 45555 489999998653
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.5e-15 Score=127.99 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=73.7
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~---- 147 (189)
..++|+++|+++.|+. + .+|+++||+|.+||+++|+|+||||||||+++|+|++.+. .+++|++...+..
T Consensus 42 ~~~~l~i~nl~~~~~~--~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD--D--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CCceEEEEEEEEEeCC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3457999999999975 2 3678999999999999999999999999999999998521 1478886433211
Q ss_pred ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
.+...+|++|+ ..+++ .++.+|+.+...
T Consensus 118 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~ 151 (305)
T PRK14264 118 GVNLVELRKRVGMVFQS-PNPFP--KSIRENISYGPR 151 (305)
T ss_pred cccHHHHhhceEEEccC-Ccccc--ccHHHHHHhHHh
Confidence 12345677765 44554 499999987653
No 253
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.59 E-value=1.8e-15 Score=140.82 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|++..+ ..++|+||+|++|+.++|+|+||||||||+++|+|+++ |++|++..++.. .
T Consensus 341 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKEV--PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCCC--ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 5999999999965322 35779999999999999999999999999999999999 999998554432 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...+++|+ ..++. .|+.+|+.++
T Consensus 416 ~~~i~~v~Q~-~~lf~--~Ti~~Ni~~~ 440 (582)
T PRK11176 416 RNQVALVSQN-VHLFN--DTIANNIAYA 440 (582)
T ss_pred HhhceEEccC-ceeec--chHHHHHhcC
Confidence 3456788877 44554 5899999764
No 254
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.59 E-value=2.2e-15 Score=138.82 Aligned_cols=92 Identities=24% Similarity=0.239 Sum_probs=73.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|++..+ ..++|+||++++|+.++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 5999999999976322 35789999999999999999999999999999999999 999997544332 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|+.+|+.++
T Consensus 395 r~~i~~v~Q~-~~lf~--~ti~~Ni~~~ 419 (529)
T TIGR02857 395 RDQIAWVPQH-PFLFA--GTIAENIRLA 419 (529)
T ss_pred HhheEEEcCC-CcccC--cCHHHHHhcc
Confidence 3356788877 44553 5899998764
No 255
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.59 E-value=2e-15 Score=144.33 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=74.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
..|+++||++.|++.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|++..++..
T Consensus 477 ~~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CeEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 3599999999997521 1235789999999999999999999999999999999999 999998544422
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++...+++|+ ..++. .|++||+.++
T Consensus 553 lr~~i~~v~Q~-~~lF~--gTIreNI~~g 578 (711)
T TIGR00958 553 LHRQVALVGQE-PVLFS--GSVRENIAYG 578 (711)
T ss_pred HHhhceEEecC-ccccc--cCHHHHHhcC
Confidence 23456788877 44553 5899999875
No 256
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.59 E-value=1.7e-15 Score=144.41 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=74.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+.. + .+|+|+||+|++|+.++|+|+||||||||+++|+|++. |++|++..++.. .
T Consensus 473 ~I~~~~vsf~y~~~-~--~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG-S--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC-C--cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 59999999999742 2 35789999999999999999999999999999999998 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|++||+.+.
T Consensus 547 r~~i~~v~Q~-~~lf~--gTI~eNi~l~ 571 (708)
T TIGR01193 547 RQFINYLPQE-PYIFS--GSILENLLLG 571 (708)
T ss_pred HHheEEEecC-ceehh--HHHHHHHhcc
Confidence 3457888877 44554 5899999875
No 257
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=5.2e-15 Score=121.47 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------- 147 (189)
+.+ +|+|.|++. . + ||||+|++ |+++|+|+||||||||+++|+|+++ |++|++...+..
T Consensus 2 ~~~-~l~~~~~~~--~---~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDF--T---L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCe--e---e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 344 899999872 2 3 99999999 9999999999999999999999998 889986433211
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++|+ ..+++ .+++.+|+.+..
T Consensus 71 ~~~~~~i~~~~q~-~~~~~-~~t~~~~l~~~~ 100 (214)
T cd03297 71 PPQQRKIGLVFQQ-YALFP-HLNVRENLAFGL 100 (214)
T ss_pred hhHhhcEEEEecC-CccCC-CCCHHHHHHHHH
Confidence 12245677765 44554 379999998754
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.59 E-value=3.6e-15 Score=120.38 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=59.9
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------CCCeEEEEecCCCCCCCC
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------PPDVATVLPMDGFHLYLS 165 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------~~~~~~vv~~~~~~l~~~ 165 (189)
++++|||+|.+||+++|+|+||||||||+++|+|+++ +++|.+...+.. .++..++++|+.......
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 5789999999999999999999999999999999998 889987433211 122356777764222222
Q ss_pred ccChhhhHHHHHH
Q 029679 166 QLDAMEDPKEAHA 178 (189)
Q Consensus 166 ~ltv~enl~~~~~ 178 (189)
.++.+|+.+...
T Consensus 84 -~tv~~nl~~~~~ 95 (190)
T TIGR01166 84 -ADVDQDVAFGPL 95 (190)
T ss_pred -ccHHHHHHHHHH
Confidence 689999987643
No 259
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.58 E-value=1.2e-14 Score=125.53 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=69.0
Q ss_pred CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeE
Q 029679 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (189)
Q Consensus 73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~ 152 (189)
...+.|+++|+++. . + .+++++||+|.+||+++|+|+||||||||+++|+|+++ |++|++...+ ..
T Consensus 35 ~~~~~l~i~nls~~--~--~--~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i 100 (282)
T cd03291 35 SDDNNLFFSNLCLV--G--A--PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RI 100 (282)
T ss_pred CCCCeEEEEEEEEe--c--c--cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EE
Confidence 34567999999985 2 2 35779999999999999999999999999999999998 8999975443 35
Q ss_pred EEEecCCCCCCCCccChhhhHHHH
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
+|++|+ ..++. .++.+|+.+.
T Consensus 101 ~yv~q~-~~l~~--~tv~enl~~~ 121 (282)
T cd03291 101 SFSSQF-SWIMP--GTIKENIIFG 121 (282)
T ss_pred EEEeCc-ccccc--cCHHHHhhcc
Confidence 667765 33443 4888887753
No 260
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.58 E-value=5.9e-15 Score=121.47 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=68.0
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------- 147 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------- 147 (189)
.+.++.+.|+.. ..+++++||+|++||+++|+|+||||||||+++|+|+++ +++|++...+..
T Consensus 2 ~~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 578899999753 235789999999999999999999999999999999998 889986443211
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+. .++. .++.+|+.+.
T Consensus 76 ~~~~~i~~~~q~~-~~~~--~t~~~nl~~~ 102 (218)
T cd03290 76 RNRYSVAYAAQKP-WLLN--ATVEENITFG 102 (218)
T ss_pred hhcceEEEEcCCC-cccc--ccHHHHHhhc
Confidence 123456777653 3442 6899998764
No 261
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8e-15 Score=123.23 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=69.0
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC--------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~-------- 147 (189)
-+++|+++.|+. + .+++|+||+|.+||+++|+|+||||||||+++|+|+.. +..+++|++...+..
T Consensus 6 ~~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGS--K--QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 478999999974 2 35779999999999999999999999999999999975 111468886433211
Q ss_pred --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..+|++|+ ..+++ .++.+|+.+..
T Consensus 82 ~~~~~~i~~v~q~-~~~~~--~tv~~ni~~~~ 110 (251)
T PRK14244 82 VLLRAKVGMVFQK-PNPFP--KSIYDNVAYGP 110 (251)
T ss_pred HHHhhhEEEEecC-ccccc--CCHHHHHHHHH
Confidence 12345777766 44454 38999998764
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.7e-15 Score=138.12 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=71.7
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P---- 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~---- 148 (189)
.++|+++|+++.|.. +++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+.. .
T Consensus 263 ~~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 263 ETVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred CcEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHH
Confidence 458999999987631 5789999999999999999999999999999999998 899997543311 1
Q ss_pred ---CCeEEEEecCC--CCCCCCccChhhhHHHH
Q 029679 149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ---~~~~~vv~~~~--~~l~~~~ltv~enl~~~ 176 (189)
++..+|++|+. ..+++ .+++.+|+.+.
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~ 365 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFP-NFSIAQNMAIS 365 (510)
T ss_pred HHHHCCcEEccCccccCCCcC-CCcHHHHhccc
Confidence 12357778753 34554 48999998764
No 263
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.58 E-value=3.1e-15 Score=139.71 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|+.. + ..++|+||++++||.++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 340 ~i~~~~v~f~y~~~-~--~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD-N--LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC-C--ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 49999999999742 2 25779999999999999999999999999999999999 999997544321 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...+++|+ ..+|. .|+++|+.+.
T Consensus 414 ~~~i~~v~Q~-~~lF~--~Ti~~NI~~~ 438 (592)
T PRK10790 414 RQGVAMVQQD-PVVLA--DTFLANVTLG 438 (592)
T ss_pred HhheEEEccC-Ccccc--chHHHHHHhC
Confidence 4567888877 55554 4899999875
No 264
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=2.5e-15 Score=140.40 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=74.6
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
..|+++|+++.|++..+ ..|+|+||++++|++++|+|+||||||||+++|+|+++ |++|++..++..
T Consensus 337 ~~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CeEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 36999999999965312 35789999999999999999999999999999999998 999997554432
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..++++|+ ..++. .|+.+|+.++
T Consensus 412 ~r~~i~~v~Q~-~~lf~--~ti~~Ni~~~ 437 (574)
T PRK11160 412 LRQAISVVSQR-VHLFS--ATLRDNLLLA 437 (574)
T ss_pred HHhheeEEccc-chhhc--ccHHHHhhcC
Confidence 13456788877 44554 5899998764
No 265
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.3e-15 Score=125.81 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=73.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------- 148 (189)
||+++|++++..+ ++ .+++|||++++||+++|+||||+|||||+|.|+|-+. |++|.+..++...
T Consensus 1 mi~a~nls~~~~G--r~--ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAG--RR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeec--ce--eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 5889999988866 33 3669999999999999999999999999999999998 9999975444321
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.+...++||+...-|+ ++|.|-+.++..-
T Consensus 74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p 102 (259)
T COG4559 74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIP 102 (259)
T ss_pred HHHhhhcccCcccccc--eEHHHHHHhcccc
Confidence 2234567877555554 7899888876643
No 266
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.57 E-value=6.4e-15 Score=124.63 Aligned_cols=91 Identities=13% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
...|+++|+++.|+... ..+++++||++++||+++|+|+||||||||+|+|+|+++ +++|++...+..
T Consensus 17 ~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 35799999999997521 235789999999999999999999999999999999998 899987543311
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
.++..++++|+. .++. .++.+|+
T Consensus 92 ~~~~~i~~v~q~~-~l~~--~tv~~nl 115 (257)
T cd03288 92 TLRSRLSIILQDP-ILFS--GSIRFNL 115 (257)
T ss_pred HHhhhEEEECCCC-cccc--cHHHHhc
Confidence 123456777653 3433 3666665
No 267
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.57 E-value=3.4e-15 Score=141.98 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|++..+ .+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 5999999999975322 35779999999999999999999999999999999999 999997554422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|++||+.+.
T Consensus 538 r~~i~~v~Q~-~~lf~--~TI~eNi~~~ 562 (694)
T TIGR03375 538 RRNIGYVPQD-PRLFY--GTLRDNIALG 562 (694)
T ss_pred HhccEEECCC-hhhhh--hhHHHHHhCC
Confidence 4467788877 44554 5899998764
No 268
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=126.89 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=73.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----- 147 (189)
..+|+++|+++.|....+ .+|+|+||+|++||++||+|+||||||||+++|+|+.... .+.+|.+...+..
T Consensus 78 ~~~i~~~nls~~y~~~~~--~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTK--HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CceEEEEeeEEEecCCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 358999999999964212 3678999999999999999999999999999999998521 1457886432211
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+...+++||+ ..++. .++++|+.+..
T Consensus 156 ~~~~~lr~~i~~v~q~-~~~~~--~ti~eNi~~~~ 187 (329)
T PRK14257 156 ISSLELRTRIGMVFQK-PTPFE--MSIFDNVAYGP 187 (329)
T ss_pred cchHhhhccEEEEecC-CccCC--CcHHHHHHhHH
Confidence 13456778876 34443 79999998764
No 269
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.56 E-value=1.3e-14 Score=121.34 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=53.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS 144 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~ 144 (189)
+|+++|+++.|++ + .+++++||+|++|++++|+|+||||||||+++|+|++ + +++|++...
T Consensus 1 ~i~~~nl~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~ 63 (248)
T PRK09580 1 MLSIKDLHVSVED--K--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFK 63 (248)
T ss_pred CeEEEEEEEEeCC--e--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEEC
Confidence 4899999999975 2 2577999999999999999999999999999999994 5 788987443
No 270
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.56 E-value=8.2e-15 Score=121.75 Aligned_cols=89 Identities=18% Similarity=0.054 Sum_probs=66.9
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~ 157 (189)
+.++++++.|+. + .+++|+||+|.+|++++|+|+||||||||+++|+|+++ +++|++...+.... ...
T Consensus 23 l~~~~~~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~-----~~~ 90 (224)
T cd03220 23 LGILGRKGEVGE--F--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS-----LLG 90 (224)
T ss_pred hhhhhhhhhcCC--e--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch-----hhc
Confidence 778888888876 2 35779999999999999999999999999999999998 89999754432110 011
Q ss_pred CCCCCCCCccChhhhHHHHHHH
Q 029679 158 DGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 158 ~~~~l~~~~ltv~enl~~~~~~ 179 (189)
....+.+ .+++.+|+.+....
T Consensus 91 ~~~~~~~-~~tv~enl~~~~~~ 111 (224)
T cd03220 91 LGGGFNP-ELTGRENIYLNGRL 111 (224)
T ss_pred ccccCCC-CCcHHHHHHHHHHH
Confidence 1122233 47899999876543
No 271
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=3.7e-15 Score=119.33 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=75.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~ 150 (189)
++.++||+...++ .-+.+ +|||+|.+|||+.|+||||||||||+..+.|.+.+-+..+|+++.++.. .++
T Consensus 2 ~l~l~nvsl~l~g--~cLLa--~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPG--SCLLA--NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCC--ceEEE--eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 5788999977766 33445 9999999999999999999999999999999998656677887554322 345
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.+++.+|| ..+|++ ++|.+|+.|++
T Consensus 78 q~GiLFQD-~lLFph-lsVg~Nl~fAl 102 (213)
T COG4136 78 QIGILFQD-ALLFPH-LSVGQNLLFAL 102 (213)
T ss_pred heeeeecc-cccccc-cccccceEEec
Confidence 67777876 566774 99999998865
No 272
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.7e-15 Score=135.92 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=68.5
Q ss_pred EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------CCC
Q 029679 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------PPD 150 (189)
Q Consensus 80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~~~ 150 (189)
++|+++.|++ + .+++||||++.+||+++|+|+||||||||+|+|+|+++ |++|++...+.. .+.
T Consensus 1 ~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPG--V--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCC--E--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 3689999975 2 35779999999999999999999999999999999998 899997433311 023
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
..++++|+ ..++. .+++.+|+.+.
T Consensus 74 ~i~~v~q~-~~~~~-~~tv~~~l~~~ 97 (491)
T PRK10982 74 GISMVHQE-LNLVL-QRSVMDNMWLG 97 (491)
T ss_pred CEEEEecc-ccccc-CCCHHHHhhcc
Confidence 45677776 34444 38999998764
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.6e-15 Score=135.97 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-CceeeccCCCC--C---
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK--P--- 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~~~~~--~--- 148 (189)
.++|+++|+++.|+.... ..+++||||+|++||+++|+|+||||||||+|+|+|+++ + ++|++...+.. .
T Consensus 257 ~~~l~~~~l~~~~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPH-IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred CceEEEecCccccccccc-cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence 458999999999942101 235789999999999999999999999999999999986 5 78887543211 0
Q ss_pred ----CCeEEEEecCCC--CCCCCccChhhhHHHHH
Q 029679 149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~~ 177 (189)
+...+|++|+.. .++. .+++.+|+.+..
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~~ 366 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVP-VMGVGKNITLAA 366 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcC-CCCHHHHhhhhh
Confidence 123567777632 2444 489999998653
No 274
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.56 E-value=8.9e-15 Score=119.47 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=64.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC--------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~-------- 147 (189)
|+++|+++.|++ + .+++|+||++.+||+++|+|+||||||||+++|+|+. . |++|++...+..
T Consensus 1 l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGG--K--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCC--E--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 478999999975 2 3577999999999999999999999999999999994 5 888886433211
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
.+....+++|+ ..+++ ..++.+++
T Consensus 74 ~~~~~i~~v~q~-~~~~~-~~~~~~~l 98 (200)
T cd03217 74 RARLGIFLAFQY-PPEIP-GVKNADFL 98 (200)
T ss_pred HhhCcEEEeecC-hhhcc-CccHHHHH
Confidence 12235667765 34444 36676655
No 275
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=2.2e-14 Score=122.56 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=68.6
Q ss_pred eEEEeeeEEEcCccc----------------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679 77 VVEARCMDEVYDALA----------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~ 140 (189)
-|+++|++|.|...+ ....+++++||+|.+||+++|+|+||||||||+++|+|+++ +++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 488999999995410 12346889999999999999999999999999999999998 89998
Q ss_pred eccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 141 i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+...+. ..++++. ..... .+++.+|+.+...
T Consensus 81 I~~~g~-----~~~~~~~-~~~~~-~~tv~enl~~~~~ 111 (264)
T PRK13546 81 VDRNGE-----VSVIAIS-AGLSG-QLTGIENIEFKML 111 (264)
T ss_pred EEECCE-----EeEEecc-cCCCC-CCcHHHHHHHHHH
Confidence 754432 1233333 22333 4789999876543
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.56 E-value=9.7e-15 Score=113.97 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=53.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~ 145 (189)
|+++|+++.|+.. .+++++||++++||+++|+|+||||||||+++|+|+++ +++|++...+
T Consensus 1 l~~~~l~~~~~~~----~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~ 61 (144)
T cd03221 1 IELENLSKTYGGK----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGS 61 (144)
T ss_pred CEEEEEEEEECCc----eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECC
Confidence 4689999999752 35779999999999999999999999999999999998 8999875543
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.56 E-value=1.4e-14 Score=150.82 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=80.1
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
..+|+++|++|.|++. ...+|+||||+|++||++||+|+||||||||+|+|+|++. |++|++...+..
T Consensus 1935 ~~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred CceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHH
Confidence 3589999999999752 1247889999999999999999999999999999999998 999997544321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~ 182 (189)
.+...+++||. ..++. .++++||+.+....++.
T Consensus 2010 ~r~~IGy~pQ~-~~L~~-~LTv~E~L~l~a~l~g~ 2042 (2272)
T TIGR01257 2010 VHQNMGYCPQF-DAIDD-LLTGREHLYLYARLRGV 2042 (2272)
T ss_pred HhhhEEEEecc-ccCCC-CCCHHHHHHHHHHhcCC
Confidence 12346788865 44554 48999999987666554
No 278
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.56 E-value=6.8e-15 Score=116.84 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=52.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
|+++|+++.|++ + .+++++||++++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 1 l~~~~l~~~~~~--~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~ 59 (163)
T cd03216 1 LELRGITKRFGG--V--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILV 59 (163)
T ss_pred CEEEEEEEEECC--e--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE
Confidence 478999999975 2 25679999999999999999999999999999999998 88998743
No 279
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.55 E-value=5.6e-15 Score=137.47 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=74.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++|+++.|++. + ..++|+||++++||.+||||+||||||||+++|+|+++ +++|.+..++.+ .
T Consensus 328 ~I~f~~vsf~y~~~-~--~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 328 SIEFENVSFSYPGK-K--PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred eEEEEEEEEEcCCC-C--ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHHH
Confidence 49999999999842 2 35679999999999999999999999999999999999 899997553322 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++...+++|+ ..+|. -|+.+|+.++.
T Consensus 402 r~~I~~V~Qd-~~LF~--~TI~~NI~~g~ 427 (567)
T COG1132 402 RKRIGIVSQD-PLLFS--GTIRENIALGR 427 (567)
T ss_pred HHhccEEccc-ceeec--ccHHHHHhcCC
Confidence 3455688876 55554 58999998863
No 280
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.55 E-value=7.2e-15 Score=137.26 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|+.. +. .++|+||++++|++++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 59999999999742 22 5779999999999999999999999999999999999 999997544322 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...+++|+ ..++. .|+++|+.++
T Consensus 408 r~~i~~v~Q~-~~lf~--~Ti~~Ni~~~ 432 (588)
T PRK13657 408 RRNIAVVFQD-AGLFN--RSIEDNIRVG 432 (588)
T ss_pred HhheEEEecC-ccccc--ccHHHHHhcC
Confidence 3457888877 45554 5899998764
No 281
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.9e-15 Score=135.04 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=73.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++||++.|+.. + ..|+++||+|++||-+||||.|||||||++|+|.+++ ..+|+|...+.+ .
T Consensus 351 ~I~F~dV~f~y~~k-~--~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-R--KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCC-C--ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 49999999999874 2 2467999999999999999999999999999999999 477886544322 3
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
|+.++++||+ -.+|. -|++.|+.++
T Consensus 424 R~~Ig~VPQd-~~LFn--dTIl~NI~YG 448 (591)
T KOG0057|consen 424 RQSIGVVPQD-SVLFN--DTILYNIKYG 448 (591)
T ss_pred hhheeEeCCc-ccccc--hhHHHHhhcC
Confidence 6678999988 44553 5899998775
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.55 E-value=2.3e-14 Score=132.84 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=72.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.++++|+++.|+...+ .+++|+||++++|+.++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 5999999999965322 35779999999999999999999999999999999998 999987444321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
++..++++|+ ..++. .|+++|+.+
T Consensus 391 ~~~i~~v~q~-~~lf~--~ti~~Ni~~ 414 (544)
T TIGR01842 391 GKHIGYLPQD-VELFP--GTVAENIAR 414 (544)
T ss_pred hhheEEecCC-ccccc--ccHHHHHhc
Confidence 3456788876 44454 488999874
No 283
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=7.4e-16 Score=125.10 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=64.6
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------CCeEEEEecCCCCCCCCcc
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------PDVATVLPMDGFHLYLSQL 167 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------~~~~~vv~~~~~~l~~~~l 167 (189)
.|+++||++++||.++|.||||||||||+|+++-|.. |++|.+...+... +....|+.|. ..+|. -
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~-paLfg--~ 91 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT-PALFG--D 91 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHHHHHHHHHHcC-ccccc--c
Confidence 4779999999999999999999999999999999998 9999975544321 1223344433 56665 5
Q ss_pred ChhhhHHHHHHHcCCCC
Q 029679 168 DAMEDPKEAHARRGGEV 184 (189)
Q Consensus 168 tv~enl~~~~~~~g~~~ 184 (189)
||++|+.|++..+...+
T Consensus 92 tVeDNlifP~~~r~rr~ 108 (223)
T COG4619 92 TVEDNLIFPWQIRNRRP 108 (223)
T ss_pred chhhccccchHHhccCC
Confidence 99999999987765443
No 284
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.54 E-value=1.3e-14 Score=124.85 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP 149 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~ 149 (189)
|+++|+++.|..... .+|+||||+|++||+++|+|+||||||||+++|+|+++ .+|.+...+.. .+
T Consensus 3 i~~~nls~~~~~~~~--~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGGN--AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHHHh
Confidence 789999999953212 36789999999999999999999999999999999984 46876544322 12
Q ss_pred CeEEEEecCCCCCCCCccChhhhHH
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
+..+|++|+ ..++. .++++|+.
T Consensus 77 ~~i~~v~q~-~~lf~--~tv~~nl~ 98 (275)
T cd03289 77 KAFGVIPQK-VFIFS--GTFRKNLD 98 (275)
T ss_pred hhEEEECCC-cccch--hhHHHHhh
Confidence 346777866 45554 48999885
No 285
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.54 E-value=9.6e-15 Score=136.21 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=70.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++||++.|.+. + .+|+|+||++++|+.++|||+||||||||+++|+|++ |++|++..++.. .
T Consensus 349 ~i~~~~vsf~~~~~-~--~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDG-K--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence 49999999766432 2 3578999999999999999999999999999999998 567887544322 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...+++|+. .+|. .|++||+.++
T Consensus 422 r~~i~~v~Q~~-~LF~--~TI~eNI~~g 446 (588)
T PRK11174 422 RKHLSWVGQNP-QLPH--GTLRDNVLLG 446 (588)
T ss_pred HhheEEecCCC-cCCC--cCHHHHhhcC
Confidence 34578888874 4554 5899999875
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.54 E-value=8e-15 Score=134.55 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=71.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-CceeeccCCCCC-----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP----- 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~~~~~~----- 148 (189)
.++|+++|+++.|+.... ..+++|+||+|++||+++|+|+||||||||+|+|+|+++ | ++|++...+...
T Consensus 255 ~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 255 DVILEARNLTCWDVINPH-RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred CceEEEeCCccccccccc-ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence 358999999999842101 135789999999999999999999999999999999997 5 688875433110
Q ss_pred ----CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679 149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~ 176 (189)
+...++++|+.. .+++ .+++.+|+.+.
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~-~~tv~~~~~~~ 363 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVP-ILGVGKNITLS 363 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCC-CCCHHHHhcch
Confidence 223567776631 3444 48899998764
No 287
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.54 E-value=1e-14 Score=135.51 Aligned_cols=94 Identities=27% Similarity=0.309 Sum_probs=73.4
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
..|+++|+++.|+.... ...++|+||++++||.++|+|+||||||||+++|+|+++ |++|++..++..
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 35999999999975211 135779999999999999999999999999999999998 999997544321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.++..+++||+ ..++. .|+++|+.++
T Consensus 412 ~~~~i~~~~Q~-~~lf~--~Ti~~Ni~~~ 437 (576)
T TIGR02204 412 LRARMALVPQD-PVLFA--ASVMENIRYG 437 (576)
T ss_pred HHHhceEEccC-Ccccc--ccHHHHHhcC
Confidence 12356788877 44553 5899998763
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=134.89 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=75.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C-----
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P----- 148 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~----- 148 (189)
++|+++|+++.|+...+....++|+||++++||+++|+|+||||||||+++|+|+++ +++|++...+.. .
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642112235779999999999999999999999999999999998 899987443321 0
Q ss_pred -----CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 -----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
++..++++|+ ..+++. +++.+|+.+...
T Consensus 80 ~~~~~~~~i~~v~q~-~~l~~~-~tv~enl~~~~~ 112 (648)
T PRK10535 80 LAQLRREHFGFIFQR-YHLLSH-LTAAQNVEVPAV 112 (648)
T ss_pred HHHHHhccEEEEeCC-cccCCC-CCHHHHHHHHHH
Confidence 2346777866 456654 799999987553
No 289
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=1.3e-15 Score=125.08 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=75.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
++.|+++|+.|.|+.. ..|++|||+-++|++++|||.|||||||++|||.-|.. |+.|.|..++..
T Consensus 4 ~~~l~v~dlHK~~G~~----eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEH----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccc----hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 3569999999999873 46779999999999999999999999999999999998 999987654421
Q ss_pred --------C------CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 148 --------P------PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 --------~------~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
. +...++++ |.|++|.+ ||+.+|+..+
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVF-Q~FNLWsH-mtvLeNViEa 117 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVF-QHFNLWSH-MTVLENVIEA 117 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhh-hhcchhHH-HHHHHHHHhc
Confidence 0 11235556 46999985 9999998775
No 290
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.54 E-value=1.1e-14 Score=135.11 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=73.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++|+++.|+...+ ..++|+||++++||+++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 5999999999965322 35779999999999999999999999999999999999 999998655422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...+++|+ ..++. .|+++|+.+.
T Consensus 405 ~~~i~~v~Q~-~~lf~--~Ti~~Ni~~~ 429 (571)
T TIGR02203 405 RRQVALVSQD-VVLFN--DTIANNIAYG 429 (571)
T ss_pred HhhceEEccC-ccccc--ccHHHHHhcC
Confidence 3456788877 44453 5899988754
No 291
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.53 E-value=2.2e-14 Score=119.49 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=58.8
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEEecCCCCCCCCccChhhhH
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
++++||+|.+||+++|+|+||||||||+++|+|+++ +++|++...+.. ......+++|+ ..++. .+++.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~-~~l~~-~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQN-YSLLP-WLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecC-cccCC-CCCHHHHH
Confidence 469999999999999999999999999999999998 899987543321 11123567765 44554 38999999
Q ss_pred HHHH
Q 029679 174 KEAH 177 (189)
Q Consensus 174 ~~~~ 177 (189)
.+..
T Consensus 76 ~~~~ 79 (230)
T TIGR01184 76 ALAV 79 (230)
T ss_pred HHHH
Confidence 8764
No 292
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.53 E-value=3.3e-14 Score=130.53 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=82.1
Q ss_pred HHHHhcccCCccccCcCCCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679 56 RSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (189)
Q Consensus 56 ~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~ 135 (189)
+.+++..|.....-+.+...-.|.++++...=++..+ ..|+++||++.+||.+|||||||||||||+|+|.|..+
T Consensus 313 ~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~--pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--- 387 (580)
T COG4618 313 NELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKK--PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--- 387 (580)
T ss_pred HHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCC--cceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---
Confidence 3566666653332222233347999999875444333 34679999999999999999999999999999999998
Q ss_pred CCceeeccCCCC--------CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 136 PQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 136 p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
|..|.+...+.+ .-+.++|.||+ ..+|+ -|+.||++-
T Consensus 388 p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd-VeLF~--GTIaeNIaR 432 (580)
T COG4618 388 PTSGSVRLDGADLRQWDREQLGRHIGYLPQD-VELFD--GTIAENIAR 432 (580)
T ss_pred cCCCcEEecchhhhcCCHHHhccccCcCccc-ceecC--CcHHHHHHh
Confidence 999987443322 12457888976 88886 499999874
No 293
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.53 E-value=1.5e-14 Score=135.04 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=72.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++++++.|+...+ .+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|++..++.. .
T Consensus 313 ~I~~~~v~~~y~~~~~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTDH--PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCCC--ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 5899999999975312 35789999999999999999999999999999999998 999997544322 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|+++|+.++
T Consensus 388 ~~~i~~v~q~-~~lf~--~ti~~Ni~~~ 412 (569)
T PRK10789 388 RSRLAVVSQT-PFLFS--DTVANNIALG 412 (569)
T ss_pred HhheEEEccC-Ceecc--ccHHHHHhcC
Confidence 3456778876 44554 5899998764
No 294
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.52 E-value=4.8e-14 Score=146.97 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=79.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.+.|+++|++|.|+...+ .+|+|+||++.+||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 926 ~~~L~I~nLsK~y~~~~k--~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGR--PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecCCCc--eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence 357999999999963212 36789999999999999999999999999999999998 999997543321
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~ 182 (189)
.++..++++|+ ..+++ .+|+.||+.+..+.++.
T Consensus 1001 ~r~~IG~~pQ~-~~L~~-~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257 1001 VRQSLGMCPQH-NILFH-HLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred HhhcEEEEecC-CcCCC-CCCHHHHHHHHHHhcCC
Confidence 12346778876 44555 49999999987766553
No 295
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.2e-14 Score=134.10 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
..++|+++|+++.|++ + .+++|+||+|.+|+++||+|+||||||||+|+|+|+++ |++|.+..+.. ...+
T Consensus 309 ~~~~l~~~~l~~~y~~--~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig 378 (638)
T PRK10636 309 PNPLLKMEKVSAGYGD--R--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG 378 (638)
T ss_pred CCceEEEEeeEEEeCC--e--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence 4568999999999975 2 35679999999999999999999999999999999998 99999754321 2356
Q ss_pred EEecCCC-CCCCCccChhhhH
Q 029679 154 VLPMDGF-HLYLSQLDAMEDP 173 (189)
Q Consensus 154 vv~~~~~-~l~~~~ltv~enl 173 (189)
|++|+.. .+.. ..++.+++
T Consensus 379 y~~Q~~~~~l~~-~~~~~~~~ 398 (638)
T PRK10636 379 YFAQHQLEFLRA-DESPLQHL 398 (638)
T ss_pred EecCcchhhCCc-cchHHHHH
Confidence 7776532 2222 24566554
No 296
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.5e-15 Score=134.96 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=74.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------- 148 (189)
.++++||+++|++. ...+|+|+||++++||.++|+|+||||||||+++|+|.+. +++|++..++...
T Consensus 336 ~l~~~~vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 79999999999874 3357889999999999999999999999999999999998 9999986554321
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++...++.| ..++|. -|+++|+.++
T Consensus 411 ~e~i~vl~Q-r~hlF~--~Tlr~NL~lA 435 (573)
T COG4987 411 RETISVLTQ-RVHLFS--GTLRDNLRLA 435 (573)
T ss_pred HHHHhhhcc-chHHHH--HHHHHHHhhc
Confidence 223455664 467775 4889998764
No 297
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=118.72 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=70.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCe-----
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----- 151 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~----- 151 (189)
+++.+|++..-+. +.+ +.++||++.+||++-|.|+||||||||+|+|+||+. |++|++...+......
T Consensus 2 ~L~a~~L~~~R~e--~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGE--RTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCc--cee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 4677888777655 333 459999999999999999999999999999999999 9999986543221111
Q ss_pred --EEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679 152 --ATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182 (189)
Q Consensus 152 --~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~ 182 (189)
.-|+-.+ .-....+|++||+.|.....+.
T Consensus 75 ~~l~yLGH~--~giK~eLTa~ENL~F~~~~~~~ 105 (209)
T COG4133 75 QALLYLGHQ--PGIKTELTALENLHFWQRFHGS 105 (209)
T ss_pred HHHHHhhcc--ccccchhhHHHHHHHHHHHhCC
Confidence 1111111 2223359999999998876653
No 298
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.52 E-value=1.6e-14 Score=137.59 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=73.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|+...+ ..++|+||++++|+.++|+|+||||||||+++|+|++. |++|++..++.. .
T Consensus 455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 5999999999965322 35779999999999999999999999999999999998 999997554432 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+ ..++. .|+++|+.+.
T Consensus 530 r~~i~~v~q~-~~lf~--~ti~eNi~~~ 554 (694)
T TIGR01846 530 RRQMGVVLQE-NVLFS--RSIRDNIALC 554 (694)
T ss_pred HHhCeEEccC-Ceehh--hhHHHHHhcC
Confidence 3456788877 44443 5899998763
No 299
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.52 E-value=3.4e-14 Score=118.11 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=59.5
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC----CceeeccCCCC------CCCeEEEEecCCCCCCCCc
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVK------PPDVATVLPMDGFHLYLSQ 166 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p----~~G~i~~~~~~------~~~~~~vv~~~~~~l~~~~ 166 (189)
++|+||++.+|++++|+|+||||||||+|+|+|+++ | ++|++...+.. ..+..++++|+....+...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 579999999999999999999999999999999998 7 78987443321 1234677777643233334
Q ss_pred cChhhhHHHHHH
Q 029679 167 LDAMEDPKEAHA 178 (189)
Q Consensus 167 ltv~enl~~~~~ 178 (189)
+++.+|+.+...
T Consensus 79 ~t~~~~~~~~~~ 90 (230)
T TIGR02770 79 FTMGNHAIETLR 90 (230)
T ss_pred cCHHHHHHHHHH
Confidence 788888766543
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.51 E-value=2.4e-14 Score=115.01 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=51.9
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
+++|+++.|+. + .+++++||++.+||+++|+|+||||||||+++|+|+++ +++|++...
T Consensus 1 ~~~~l~~~~~~--~--~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~ 59 (180)
T cd03214 1 EVENLSVGYGG--R--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLD 59 (180)
T ss_pred CeeEEEEEECC--e--eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEC
Confidence 46899999975 2 35779999999999999999999999999999999998 899987543
No 301
>PRK13409 putative ATPase RIL; Provisional
Probab=99.50 E-value=5.8e-14 Score=132.26 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
..++|+++|+++.|++. .++++||+|++||+++|+|+||||||||+|+|+|+++ |++|++... ...+
T Consensus 337 ~~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~ 403 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKIS 403 (590)
T ss_pred CceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEE
Confidence 34689999999999752 2679999999999999999999999999999999998 899987543 1356
Q ss_pred EEecCCCCCCCCccChhhhHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
|++|+ ..+.. .+++.+|+.+.
T Consensus 404 y~~Q~-~~~~~-~~tv~e~l~~~ 424 (590)
T PRK13409 404 YKPQY-IKPDY-DGTVEDLLRSI 424 (590)
T ss_pred Eeccc-ccCCC-CCcHHHHHHHH
Confidence 67765 34444 48999998875
No 302
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.50 E-value=4.5e-14 Score=116.70 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=57.4
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec-cCCCCCCCeEEEEecCCCCCCCCccChhhhHH
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~-~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
+++||||+|.+|++++|+|+||||||||+|+|+|+++ +++|.+. ..+... .+.+ ...+++ .+++.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~-~~~l~~-~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGA-NSFILP-GLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccc-ccccCC-cCcHHHHHH
Confidence 4679999999999999999999999999999999998 8999874 222110 0111 123444 489999998
Q ss_pred HHHHHcC
Q 029679 175 EAHARRG 181 (189)
Q Consensus 175 ~~~~~~g 181 (189)
+.....+
T Consensus 72 ~~~~~~~ 78 (213)
T PRK15177 72 MMASLYG 78 (213)
T ss_pred HHHHHcC
Confidence 8765443
No 303
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=3e-14 Score=130.47 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=54.7
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
.+|+++|+++.|++ + .+|+|+||+|.+|++++|+|+||||||||+|+|+|+++ |++|.+..
T Consensus 2 ~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~ 62 (490)
T PRK10938 2 SSLQISQGTFRLSD--T--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQS 62 (490)
T ss_pred ceEEEEeEEEEcCC--e--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEE
Confidence 37999999999975 2 25789999999999999999999999999999999998 88998743
No 304
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.50 E-value=3.6e-14 Score=132.99 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.++++|+++.|++. + ..++|+||++++|++++|+|+||||||||+++|+|+++ |++|++..++.. .
T Consensus 334 ~i~~~~v~~~y~~~-~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANS-S--QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCC-C--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 59999999999752 2 25789999999999999999999999999999999998 999997543321 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++..++++|+. .++. .|+++|+.++
T Consensus 408 ~~~i~~v~q~~-~lf~--~ti~~Ni~~~ 432 (585)
T TIGR01192 408 RKSIATVFQDA-GLFN--RSIRENIRLG 432 (585)
T ss_pred HhheEEEccCC-ccCc--ccHHHHHhcC
Confidence 34567888774 4443 5899998764
No 305
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=3.9e-14 Score=129.70 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-Cceeecc
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFD 143 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~ 143 (189)
..++|+++|+++.|++ + .+++|+||+|++||+++|+|+||||||||+|+|+|+.+ + ++|++..
T Consensus 257 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~ 320 (490)
T PRK10938 257 NEPRIVLNNGVVSYND--R--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTL 320 (490)
T ss_pred CCceEEEeceEEEECC--e--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEE
Confidence 3468999999999975 2 25779999999999999999999999999999999875 4 5787643
No 306
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=1.3e-14 Score=120.23 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=76.2
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC-CCCC-----
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP----- 149 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~-~~~~----- 149 (189)
++|++++++++|+++ .||+++||++.+||.-+||||||+||||++.+|+|..+ |+.|+++..+ .+..
T Consensus 4 ~iL~~~~vsVsF~GF----~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGF----KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEcce----eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 579999999999885 68899999999999999999999999999999999998 9999975444 2210
Q ss_pred Ce--EEE--EecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 150 DV--ATV--LPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 150 ~~--~~v--v~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
++ .++ =+ |-...|.. ++|++|+.++....+
T Consensus 77 ~IAr~GIGRKF-Q~PtVfe~-ltV~eNLelA~~~~k 110 (249)
T COG4674 77 RIARAGIGRKF-QKPTVFEN-LTVRENLELALNRDK 110 (249)
T ss_pred HHHHhccCccc-cCCeehhh-ccHHHHHHHHhcCCc
Confidence 11 111 13 33556664 999999999876543
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=3.1e-14 Score=141.13 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=77.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||.++|+.. ..+..|+|+||+|++|++++|||+|||||||++++|.+++. |++|++...+.+ .
T Consensus 350 ~ief~nV~FsYPsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 59999999999874 34667889999999999999999999999999999999999 999998554433 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+...++|.|++ -+|. .|+.||+.++.
T Consensus 426 r~~iglV~QeP-vlF~--~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 426 RSQIGLVSQEP-VLFA--TTIRENIRYGK 451 (1228)
T ss_pred HhhcCeeeech-hhhc--ccHHHHHhcCC
Confidence 34567777663 4443 79999998764
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.49 E-value=3.6e-14 Score=144.91 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=74.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc----------------------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI---------------------- 134 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~---------------------- 134 (189)
-|+++||++.|+... ...+|+|+||+|++|+++||||+||||||||+++|+|++.+.
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 499999999997521 123678999999999999999999999999999999999820
Q ss_pred -----------------------------CCCceeeccCCCC--------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 135 -----------------------------WPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 135 -----------------------------~p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
.+++|.|..++.+ .++..++|+|+ ..+|. .|++||+.++
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe-p~LF~--gTIreNI~~g 1319 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE-PMLFN--MSIYENIKFG 1319 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC-Ccccc--ccHHHHHhcC
Confidence 1257887544322 24456788877 45553 6999999886
No 309
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.49 E-value=1e-13 Score=131.86 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=71.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv 155 (189)
.+|+++|+++.|++. + ..++|+||++++||+++|+|+||||||||+|+|+|+++ +++|.+.... +...+++
T Consensus 450 ~~i~~~nv~~~~~~~-~--~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~v 520 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-D--VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFYV 520 (659)
T ss_pred CeEEEEeeEEECCCC-C--eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEEE
Confidence 469999999999642 2 35779999999999999999999999999999999998 8888875432 3456778
Q ss_pred ecCCCCCCCCccChhhhHHHH
Q 029679 156 PMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 156 ~~~~~~l~~~~ltv~enl~~~ 176 (189)
+|+. .++. .++++|+.++
T Consensus 521 ~Q~~-~l~~--~tv~eni~~~ 538 (659)
T TIGR00954 521 PQRP-YMTL--GTLRDQIIYP 538 (659)
T ss_pred CCCC-CCCC--cCHHHHHhcC
Confidence 8764 3443 3899998765
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=4.7e-14 Score=133.73 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=54.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
||+++|+++.|++ + ..++||||+|.+|+++||+|+||||||||+|+|+|++. |++|.|...
T Consensus 1 ~i~i~nls~~~g~--~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~ 61 (638)
T PRK10636 1 MIVFSSLQIRRGV--R--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFP 61 (638)
T ss_pred CEEEEEEEEEeCC--c--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEec
Confidence 5899999999976 2 35679999999999999999999999999999999998 999997543
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.48 E-value=5.7e-14 Score=143.43 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=75.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc-CCCC--------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~-~~~~-------- 147 (189)
.|+++||++.|+.. ....+|+|+||+|++|+++||+|+||||||||+++|+|++. |++|.+.. ++..
T Consensus 382 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 59999999999753 12346789999999999999999999999999999999999 99999754 3221
Q ss_pred CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
.++..++++|+ ..++. .|+.+|+.++.
T Consensus 458 lr~~Ig~V~Q~-~~LF~--~TI~eNI~~g~ 484 (1466)
T PTZ00265 458 WRSKIGVVSQD-PLLFS--NSIKNNIKYSL 484 (1466)
T ss_pred HHHhccEeccc-ccchh--ccHHHHHHhcC
Confidence 12346778876 45554 59999999863
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.48 E-value=6.7e-14 Score=128.71 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
.++|+++|+++. .++++||+|++||+++|+|+||||||||+|+|+|+++ |++|++...+..
T Consensus 255 ~~~l~~~~l~~~---------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 255 EVRLKVDNLSGP---------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQ 322 (501)
T ss_pred CcEEEEeCcccC---------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 458999999841 3679999999999999999999999999999999998 899997443311
Q ss_pred --CCCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679 148 --PPDVATVLPMDGF--HLYLSQLDAMEDPKEA 176 (189)
Q Consensus 148 --~~~~~~vv~~~~~--~l~~~~ltv~enl~~~ 176 (189)
.+...+|++|+.. .+++ .+++.+|+.+.
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~ 354 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVL-GMSVKENMSLT 354 (501)
T ss_pred HHHHCCCEEecCccccCCCcC-CCcHHHHhhhh
Confidence 0123577787642 3444 48999998764
No 313
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.48 E-value=6.2e-14 Score=132.69 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
|.+|+++|+++.|++ + ..++||||+|.+|++++|+|+||||||||+|+|+|++. |++|.+...
T Consensus 1 m~~l~i~~ls~~~~~--~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~ 63 (635)
T PRK11147 1 MSLISIHGAWLSFSD--A--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYE 63 (635)
T ss_pred CcEEEEeeEEEEeCC--c--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeC
Confidence 357999999999976 2 35679999999999999999999999999999999998 899997543
No 314
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=3.3e-14 Score=115.25 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=76.1
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc--CCCC--------
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQVK-------- 147 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~--~~~~-------- 147 (189)
|+++++++.|+.. .+|.||+|+.+.||++.++||||+|||||+|.|.-|.- |.+|.+.. +..+
T Consensus 3 irv~~in~~yg~~----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 3 IQLNGINCFYGAH----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred eEEcccccccccc----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccHH
Confidence 8899999999874 46779999999999999999999999999999998886 88888522 1111
Q ss_pred ----CCCeEEEEecCCCCCCCCccChhhhHHHH-HHHcCCC
Q 029679 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGGE 183 (189)
Q Consensus 148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~-~~~~g~~ 183 (189)
.++..++++|+ +++|++ ++|.+|+..+ .+..|.+
T Consensus 76 ~i~~lr~~vgmvfqq-y~lwph-ltv~enlieap~kv~gl~ 114 (242)
T COG4161 76 AIRDLRRNVGMVFQQ-YNLWPH-LTVQENLIEAPCRVLGLS 114 (242)
T ss_pred HHHHHHHhhhhhhhh-hccCch-hHHHHHHHhhhHHHhCCC
Confidence 13345667765 999996 9999998775 3444543
No 315
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.47 E-value=5.4e-14 Score=118.49 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=61.3
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C------CC
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P------PD 150 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~------~~ 150 (189)
+++||++. .+|+||||++.+|++++|+|+||||||||+++|+|+++ + +|++...+.. . +.
T Consensus 2 ~~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh--------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence 46677663 14779999999999999999999999999999999984 4 7886433221 0 12
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHH
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
..++++|+ ...+. .+++.+|+.+.
T Consensus 70 ~i~~v~q~-~~~~~-~~tv~~nl~~~ 93 (248)
T PRK03695 70 HRAYLSQQ-QTPPF-AMPVFQYLTLH 93 (248)
T ss_pred heEEeccc-CccCC-CccHHHHHHhc
Confidence 35677765 33333 37899998765
No 316
>PTZ00243 ABC transporter; Provisional
Probab=99.47 E-value=6.8e-14 Score=143.61 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+.... .+|+||||+|++||.+||||+||||||||+++|.|+++ +++|+|..++.+ .
T Consensus 1308 ~I~f~nVsf~Y~~~~~--~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP--LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCCC--ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 5999999999965322 36789999999999999999999999999999999999 999997544432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
++..+++||+. .+|. .|+++|+..
T Consensus 1383 R~~I~iVpQdp-~LF~--gTIreNIdp 1406 (1560)
T PTZ00243 1383 RRQFSMIPQDP-VLFD--GTVRQNVDP 1406 (1560)
T ss_pred HhcceEECCCC-cccc--ccHHHHhCc
Confidence 45678899874 4554 489998853
No 317
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.9e-14 Score=129.45 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------- 148 (189)
.++++|+++.|+++. .++.|+||++++|+.++|||+||||||||+++|+|+++ +++|++..++...
T Consensus 320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 355669999998752 46779999999999999999999999999999999998 8999986655432
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++...+++|++ +++. -|++||+.++.
T Consensus 394 ~k~i~~v~Q~p-~lf~--gTireNi~l~~ 419 (559)
T COG4988 394 RKQISWVSQNP-YLFA--GTIRENILLAR 419 (559)
T ss_pred HhHeeeeCCCC-cccc--ccHHHHhhccC
Confidence 23467788763 4443 58999987643
No 318
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.47 E-value=2.2e-13 Score=126.82 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
.++++++|+++.|+... ...+|++|||+|.+|++++|+|+||||||||+++|+|+++ |++|.+...+... +
T Consensus 19 ~~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~ 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L 89 (549)
T ss_pred cceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e
Confidence 35788999988886531 1236789999999999999999999999999999999998 9999975443211 1
Q ss_pred EecCCCCCCCCccChhhhHHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~~ 177 (189)
+.+. ..+.. .+++.+|+.+..
T Consensus 90 i~~~-~~l~~-~lTV~EnL~l~~ 110 (549)
T PRK13545 90 IAIS-SGLNG-QLTGIENIELKG 110 (549)
T ss_pred EEec-cccCC-CCcHHHHHHhhh
Confidence 1111 22233 478999987644
No 319
>PLN03232 ABC transporter C family member; Provisional
Probab=99.47 E-value=7e-14 Score=143.07 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=73.0
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+...+ .+|+|+||+|++||.+||||+||||||||+++|.|+++ |++|+|..++.+ .
T Consensus 1234 ~I~f~nVsf~Y~~~~~--~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCCC--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 5999999999964212 35789999999999999999999999999999999999 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
++...++||+ ..+|. .|+++|+..
T Consensus 1309 R~~i~iVpQd-p~LF~--gTIr~NL~~ 1332 (1495)
T PLN03232 1309 RRVLSIIPQS-PVLFS--GTVRFNIDP 1332 (1495)
T ss_pred HhhcEEECCC-CeeeC--ccHHHHcCC
Confidence 4456888987 44454 488888854
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=99.46 E-value=8.2e-14 Score=143.38 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=73.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||+++|....+ .+|+||||+|++||.+||||+||||||||+++|.|+++ +++|+|..++.+ .
T Consensus 1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 5999999999965212 35789999999999999999999999999999999999 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
++...++||+. .+|. -|+++|+..
T Consensus 1312 R~~IsiVpQdp-~LF~--GTIreNLd~ 1335 (1622)
T PLN03130 1312 RKVLGIIPQAP-VLFS--GTVRFNLDP 1335 (1622)
T ss_pred HhccEEECCCC-cccc--ccHHHHhCc
Confidence 35578889874 4554 489999864
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.46 E-value=6.3e-14 Score=130.16 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=62.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++|+++.|++. + .+++|+||++++|++++|+|+||||||||+++|+|+++ |++|.+..++.. .
T Consensus 322 ~i~~~~v~f~y~~~-~--~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDN-G--FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCC-C--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 69999999999742 2 25779999999999999999999999999999999998 999997543321 1
Q ss_pred CCeEEEEecCC
Q 029679 149 PDVATVLPMDG 159 (189)
Q Consensus 149 ~~~~~vv~~~~ 159 (189)
++...+++|+.
T Consensus 396 ~~~i~~v~q~~ 406 (547)
T PRK10522 396 RKLFSAVFTDF 406 (547)
T ss_pred hhheEEEecCh
Confidence 34567788763
No 322
>PLN03211 ABC transporter G-25; Provisional
Probab=99.46 E-value=1e-13 Score=132.05 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC--ceeeccCCCC----CCCeE
Q 029679 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVK----PPDVA 152 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~--~G~i~~~~~~----~~~~~ 152 (189)
.++|+++.|++ + ..|+|||+++++||++||+|+||||||||+++|+|+++ ++ +|++..++.. ..+..
T Consensus 70 ~~~~l~~~~~~--~--~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQE--R--TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCC--C--eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 35567777764 2 35789999999999999999999999999999999987 54 7887443321 12346
Q ss_pred EEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 153 TVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 153 ~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
++++|+ ..+++ .+|+.||+.+....
T Consensus 143 ~yv~Q~-~~l~~-~lTV~E~l~~~a~~ 167 (659)
T PLN03211 143 GFVTQD-DILYP-HLTVRETLVFCSLL 167 (659)
T ss_pred EEECcc-cccCC-cCCHHHHHHHHHHh
Confidence 788876 44454 48999999987543
No 323
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.46 E-value=1.9e-14 Score=109.54 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=55.2
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CCCeEEEEecCCCCCCCCccC
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLD 168 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~lt 168 (189)
|+||||++.+|++++|+|+||||||||+++|+|+.+ +.+|.+...+.. .+....+++++ ..++. .++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQD-PQLFP-GLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESS-HCHHT-TSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccc-ccccc-ccc
Confidence 579999999999999999999999999999999998 889987443321 12345677766 44444 367
Q ss_pred hhhh
Q 029679 169 AMED 172 (189)
Q Consensus 169 v~en 172 (189)
+.+|
T Consensus 76 v~~~ 79 (137)
T PF00005_consen 76 VREN 79 (137)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7776
No 324
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.3e-14 Score=115.74 Aligned_cols=61 Identities=18% Similarity=0.387 Sum_probs=55.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
.|++++.+++|.|+.. ...+||||++.+||++||||+||||||||+++|++-+. |+.|++.
T Consensus 4 ~PLL~V~~lsk~Yg~~----~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~ 64 (258)
T COG4107 4 KPLLSVSGLSKLYGPG----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVT 64 (258)
T ss_pred CcceeehhhhhhhCCC----cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEE
Confidence 4689999999999874 35679999999999999999999999999999999998 9999863
No 325
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.46 E-value=2.2e-13 Score=138.66 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=76.5
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCe
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDV 151 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~ 151 (189)
.+++++||++.|+.......+|+|||+++++||+++|+|+||||||||+++|+|+.++-.+++|++..++.. .++.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 368999999999532112246789999999999999999999999999999999985222467887443321 2345
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
.++++|+.. +++ .+||+||+.+....+
T Consensus 838 i~yv~Q~~~-~~~-~~Tv~E~L~~~a~l~ 864 (1394)
T TIGR00956 838 IGYVQQQDL-HLP-TSTVRESLRFSAYLR 864 (1394)
T ss_pred eeeeccccc-CCC-CCCHHHHHHHHHHhC
Confidence 678887643 344 489999999876544
No 326
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=1.5e-13 Score=140.76 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=72.9
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||++.|+...+ .+|+||||+|++||.+||||+||||||||+++|.|+++ +++|+|..++.+ .
T Consensus 1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 5999999999975322 36889999999999999999999999999999999999 999998554432 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
++...++||+ ..+|. -|+++|+.
T Consensus 1359 R~~i~iVpQd-p~LF~--gTIr~NLd 1381 (1522)
T TIGR00957 1359 RFKITIIPQD-PVLFS--GSLRMNLD 1381 (1522)
T ss_pred HhcCeEECCC-CcccC--ccHHHHcC
Confidence 4557888987 44444 48888885
No 327
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.7e-13 Score=125.61 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
.++|+++|+++.+. .++++|||+|++||+++|+|+||||||||+|+|+|+++ |++|.+...
T Consensus 248 ~~~i~~~~l~~~~~------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~ 308 (491)
T PRK10982 248 EVILEVRNLTSLRQ------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLH 308 (491)
T ss_pred CcEEEEeCcccccC------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEEC
Confidence 45899999998741 25779999999999999999999999999999999998 899997544
No 328
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.44 E-value=4.8e-13 Score=124.65 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
|.+|+++++++.|+. +.+ ++++||++.+|+.+||||+||||||||||+|+|.+. +++|+|..... -..++
T Consensus 1 m~~i~~~~ls~~~g~--~~l--~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGD--RPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCC--cee--ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 458999999999976 334 569999999999999999999999999999999998 99998754321 23566
Q ss_pred EecCCCCCCCCccChhhhHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~ 176 (189)
++|+ ..... ..++.+.+..+
T Consensus 71 l~Q~-~~~~~-~~tv~~~v~~~ 90 (530)
T COG0488 71 LSQE-PPLDP-EKTVLDYVIEG 90 (530)
T ss_pred eCCC-CCcCC-CccHHHHHHhh
Confidence 6765 33332 35777766554
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.42 E-value=2.1e-13 Score=127.12 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=62.8
Q ss_pred eEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
.|+++||++.|++.. ....+|+|+||++++|++++|+|+||||||||+++|+|++. |++|.+..++..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 599999999997521 11235789999999999999999999999999999999998 999997544322
Q ss_pred CCCeEEEEecCC
Q 029679 148 PPDVATVLPMDG 159 (189)
Q Consensus 148 ~~~~~~vv~~~~ 159 (189)
.++...+++|+.
T Consensus 414 ~~~~i~~v~q~~ 425 (555)
T TIGR01194 414 YRDLFSAIFADF 425 (555)
T ss_pred HHhhCcEEccCh
Confidence 123456777663
No 330
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=1.4e-13 Score=118.69 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=57.3
Q ss_pred CeEEEeeeEEEcCc-----------------cceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc
Q 029679 76 PVVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (189)
Q Consensus 76 ~~l~~~~l~~~~~~-----------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~ 138 (189)
.++.++|++|.|.- ..+.+.||.||||+|++|++++++|+||+||||++|||+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 36788888888831 0123568999999999999999999999999999999999998 999
Q ss_pred eeeccCCCC
Q 029679 139 ASSFDSQVK 147 (189)
Q Consensus 139 G~i~~~~~~ 147 (189)
|.+..++..
T Consensus 79 G~v~V~G~~ 87 (325)
T COG4586 79 GKVRVNGKD 87 (325)
T ss_pred CeEEecCcC
Confidence 998665544
No 331
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=9.2e-14 Score=116.48 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=75.3
Q ss_pred eEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------
Q 029679 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------- 148 (189)
|+.+.|+.+.|... ...-.+++++||+|.+|+++-|+|.||+|||||+++|+|-+. +++|.|...+.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 46778888888543 222356789999999999999999999999999999999998 9999986544321
Q ss_pred -CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 149 -~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.....-++|+...-....+|+.||++++..+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence 1112224677555444569999999987644
No 332
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.2e-13 Score=114.55 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=55.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~ 145 (189)
|++++|++|.|+.. .+|+++|++|++|.+++|+||||+|||||+.++++|++ .++|.+...+
T Consensus 1 MI~i~nv~K~y~~~----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g 62 (252)
T COG4604 1 MITIENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDG 62 (252)
T ss_pred CeeehhhhHhhCCE----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEee
Confidence 58999999999873 35779999999999999999999999999999999999 9999975443
No 333
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.4e-13 Score=125.06 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=67.8
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P---- 148 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~---- 148 (189)
.+++++++++. . ..++|+||+|++||+++|+|+||||||||+|+|+|+++ |++|.+...+.. .
T Consensus 255 ~~~l~~~~~~~--~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 255 EVRLRLDGLKG--P------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred CcEEEEecccc--C------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHH
Confidence 35799999972 2 24679999999999999999999999999999999998 899997543211 1
Q ss_pred ---CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679 149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ---~~~~~vv~~~~~--~l~~~~ltv~enl~~~ 176 (189)
+...++++|+.. .++. .+++.+|+.+.
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~-~~tv~e~l~~~ 355 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIP-VHSVADNINIS 355 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcC-CCCHHHHhccc
Confidence 123567776531 2444 38899998764
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.42 E-value=4.6e-13 Score=128.70 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=61.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v 154 (189)
.++|+++|+++.|++. + .+++|+||+|.+|++++|+|+||||||||+|+|+|+++ |++|.+.... +...+|
T Consensus 506 ~~~L~~~~ls~~y~~~-~--~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy 576 (718)
T PLN03073 506 PPIISFSDASFGYPGG-P--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV 576 (718)
T ss_pred CceEEEEeeEEEeCCC-C--eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE
Confidence 4689999999999642 1 25679999999999999999999999999999999998 9999986432 223566
Q ss_pred EecC
Q 029679 155 LPMD 158 (189)
Q Consensus 155 v~~~ 158 (189)
++|+
T Consensus 577 v~Q~ 580 (718)
T PLN03073 577 FSQH 580 (718)
T ss_pred Eecc
Confidence 7765
No 335
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.41 E-value=3.7e-13 Score=124.23 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=66.7
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C---
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P--- 148 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~--- 148 (189)
..++|+++|+++ . .+++|||+|++|++++|+|+||||||||+|+|+|+++ |++|.+...+.. .
T Consensus 265 ~~~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 265 GAPVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALST 332 (510)
T ss_pred CCceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCH
Confidence 345899999983 1 3679999999999999999999999999999999998 889987443311 1
Q ss_pred ----CCeEEEEecCC--CCCCCCccChhhhHHH
Q 029679 149 ----PDVATVLPMDG--FHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ----~~~~~vv~~~~--~~l~~~~ltv~enl~~ 175 (189)
+....|++|+. ..+++ .+++.+|+..
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~-~~t~~~~l~~ 364 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYL-DAPLAWNVCA 364 (510)
T ss_pred HHHHhCCcEECCCChhhCCccC-CCcHHHHHHh
Confidence 12356777652 23444 3788888753
No 336
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=118.40 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceee-ccCCCC---
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK--- 147 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i-~~~~~~--- 147 (189)
.+++|+++|+++.|......+.+|++|||+|.+||++||||+||||||-.++.|+||++. ...-+|++ +++...
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 457899999999996543456789999999999999999999999999999999999963 22334555 333211
Q ss_pred --------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
+-+.+.++||....-..+..++...+...++.
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~ 122 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH
Confidence 22345667766554443345677777776543
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=2.9e-13 Score=109.79 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=48.0
Q ss_pred eeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 81 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
.|+++.|++ +. ++++ +|++++||+++|+|+||||||||+|+|+|+++ |++|.+...
T Consensus 4 ~~l~~~~~~--~~--~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~ 59 (177)
T cd03222 4 PDCVKRYGV--FF--LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWD 59 (177)
T ss_pred CCeEEEECC--EE--EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEEC
Confidence 578999976 22 3556 49999999999999999999999999999998 999997543
No 338
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=4.4e-13 Score=133.03 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=76.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++||++.|+.. ..+..++|+||++++|+++||||||||||||...+|-+++. |.+|.+...+.+ .
T Consensus 987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 39999999999864 44678899999999999999999999999999999999998 999997443322 1
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
|...++|.|. ..+|. -|++||+.++
T Consensus 1063 R~~i~lVsQE-P~LF~--~TIrENI~YG 1087 (1228)
T KOG0055|consen 1063 RKQIGLVSQE-PVLFN--GTIRENIAYG 1087 (1228)
T ss_pred HHhcceeccC-chhhc--ccHHHHHhcc
Confidence 3445667654 66775 5999999998
No 339
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.2e-13 Score=123.39 Aligned_cols=90 Identities=23% Similarity=0.233 Sum_probs=69.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++||++.|... + ..|+||||++.+|+++|||||||+||||++|+|.++.. .++|.|...+.+ .
T Consensus 537 ~i~fsnvtF~Y~p~-k--~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG-K--PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCC-C--ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 59999999999764 3 34669999999999999999999999999999999998 889987444332 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
+..++++|||.. +|. -|+..|+.+
T Consensus 611 Rs~IGVVPQDtv-LFN--dTI~yNIry 634 (790)
T KOG0056|consen 611 RSSIGVVPQDTV-LFN--DTILYNIRY 634 (790)
T ss_pred HHhcCcccCcce-eec--ceeeeheee
Confidence 345688898743 332 245555544
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.39 E-value=7e-13 Score=135.77 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=70.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.|+++||+++|+...+ .+|+||||+|++||.+||||+||||||||+++|+|++. .+|+|..++.+ .
T Consensus 1217 ~I~f~nVs~~Y~~~~~--~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGR--AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCCc--ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence 5999999999975322 36789999999999999999999999999999999984 57887544422 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
++...++||+ ..+|. -|+++|+.
T Consensus 1291 R~~is~IpQd-p~LF~--GTIR~NLd 1313 (1490)
T TIGR01271 1291 RKAFGVIPQK-VFIFS--GTFRKNLD 1313 (1490)
T ss_pred HhceEEEeCC-CccCc--cCHHHHhC
Confidence 4457888987 44554 48999985
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=9e-13 Score=103.31 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=50.7
Q ss_pred EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
++++++.|.+ + .+++++||++.+|++++|+|+||||||||+++|+|+++ +..|++...
T Consensus 2 ~~~~~~~~~~--~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~ 59 (157)
T cd00267 2 IENLSFRYGG--R--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILID 59 (157)
T ss_pred eEEEEEEeCC--e--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEEC
Confidence 5789999965 2 35779999999999999999999999999999999998 888887543
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.8e-12 Score=109.32 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=69.3
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------- 147 (189)
+.+|+++|+.....+. + ..|++|||+|++||+.+|+||||||||||+++|+|.- .+-.++|.+...+.+
T Consensus 1 m~~L~I~dLhv~v~~~-k--eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 1 MMMLEIKDLHVEVEGK-K--EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred CceeEEeeeEEEecCc-h--hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHh
Confidence 3579999999998762 1 3577999999999999999999999999999999965 355788887443322
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~ 178 (189)
+.+...++-+|...-++ ..++.+.+..+..
T Consensus 77 ERAr~GifLafQ~P~ei~-GV~~~~fLr~a~n 107 (251)
T COG0396 77 ERARAGIFLAFQYPVEIP-GVTNSDFLRAAMN 107 (251)
T ss_pred HHHhcCCEEeecCCccCC-CeeHHHHHHHHHH
Confidence 12223333334233334 3666666665554
No 343
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.36 E-value=2e-12 Score=109.39 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=53.7
Q ss_pred cccceeEec-----CCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhh
Q 029679 97 TSALASNVN-----VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME 171 (189)
Q Consensus 97 l~~vsl~i~-----~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~e 171 (189)
+.+++|++. +||+++|+|+||||||||+++|+|+++ |++|++...+. ...+++|+ ..... .+++.+
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~-~~~~~-~~tv~e 80 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQY-IKADY-EGTVRD 80 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEeccc-ccCCC-CCCHHH
Confidence 345666665 799999999999999999999999998 89998754432 35566655 33333 378999
Q ss_pred hHHHHH
Q 029679 172 DPKEAH 177 (189)
Q Consensus 172 nl~~~~ 177 (189)
|+.+..
T Consensus 81 ~l~~~~ 86 (246)
T cd03237 81 LLSSIT 86 (246)
T ss_pred HHHHHh
Confidence 886543
No 344
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=1.9e-12 Score=133.43 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=71.9
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc-eeeccCCCCCCCeEEE
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV 154 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~-G~i~~~~~~~~~~~~v 154 (189)
..|+++|+++.|+... ....|+|+||++++|+.++|+|+||||||||+++|+|+++ +.+ |.+.. +....|
T Consensus 613 ~~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l-----~~~Iay 683 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI-----RGTVAY 683 (1622)
T ss_pred CceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE-----cCeEEE
Confidence 3699999999997421 1135789999999999999999999999999999999998 888 78752 345678
Q ss_pred EecCCCCCCCCccChhhhHHHH
Q 029679 155 LPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 155 v~~~~~~l~~~~ltv~enl~~~ 176 (189)
++|+ ..++. .|++||+.++
T Consensus 684 v~Q~-p~Lfn--gTIreNI~fg 702 (1622)
T PLN03130 684 VPQV-SWIFN--ATVRDNILFG 702 (1622)
T ss_pred EcCc-cccCC--CCHHHHHhCC
Confidence 8876 44443 6999999975
No 345
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=4.3e-13 Score=116.15 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=69.5
Q ss_pred eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------CC
Q 029679 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------~~ 149 (189)
|+.+.++.+ +| +++|+++.-.++||.|.||||||||+|+|+||.+ |+.|.|..++.. .+
T Consensus 5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 355555552 33 7899999878999999999999999999999999 999987443321 24
Q ss_pred CeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
+..+|+||| ..+|++ ++|..|+.|+.+..
T Consensus 76 RriGYVFQD-ARLFpH-~tVrgNL~YG~~~~ 104 (352)
T COG4148 76 RRIGYVFQD-ARLFPH-YTVRGNLRYGMWKS 104 (352)
T ss_pred heeeeEeec-cccccc-eEEecchhhhhccc
Confidence 567888876 888885 99999999987543
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.35 E-value=1.8e-12 Score=132.98 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=71.5
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~ 156 (189)
.++++|+++.|+...+ .+|+|+||++++|++++|+|+||||||||+++|+|+++ +.+|++...+ ...|++
T Consensus 636 ~i~~~~~~~~~~~~~~--~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLP--PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCC--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence 6999999999975212 35779999999999999999999999999999999998 8999975432 367788
Q ss_pred cCCCCCCCCccChhhhHHHH
Q 029679 157 MDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 157 ~~~~~l~~~~ltv~enl~~~ 176 (189)
|+. .++. .|+++|+.++
T Consensus 706 Q~~-~l~~--~Ti~eNI~~g 722 (1522)
T TIGR00957 706 QQA-WIQN--DSLRENILFG 722 (1522)
T ss_pred CCc-cccC--CcHHHHhhcC
Confidence 763 3443 6999999874
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.35 E-value=1.5e-12 Score=133.39 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=71.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~ 156 (189)
.++++|+++.|+... ....|+|+||++++|+.++|+|+||||||||+++|+|+++ +.+|.+.. .+....|++
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence 599999999997421 1135789999999999999999999999999999999998 87775431 234567788
Q ss_pred cCCCCCCCCccChhhhHHHHH
Q 029679 157 MDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 157 ~~~~~l~~~~ltv~enl~~~~ 177 (189)
|+ ..++. .|++||+.++.
T Consensus 686 Q~-p~Lf~--gTIreNI~fg~ 703 (1495)
T PLN03232 686 QV-SWIFN--ATVRENILFGS 703 (1495)
T ss_pred Cc-ccccc--ccHHHHhhcCC
Confidence 76 44443 58999999753
No 348
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.34 E-value=2.3e-12 Score=106.89 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred eEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 102 l~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
|++++||+++|+|+||||||||+++|+|+++ +++|++...+.. .++..+|++|+........+++.+|+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 5788999999999999999999999999998 899997544432 12345677765322111126888888764
No 349
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.32 E-value=1.2e-12 Score=111.46 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=48.0
Q ss_pred eeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 81 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
.+++++|+.. ..+++|+|+ +.+|++++|+|+||||||||+++|+|+++ |++|.+.
T Consensus 4 ~~~~~~y~~~---~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~ 58 (255)
T cd03236 4 DEPVHRYGPN---SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFD 58 (255)
T ss_pred cCcceeecCc---chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEe
Confidence 4688999652 146789995 99999999999999999999999999998 9999984
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.32 E-value=6.2e-12 Score=117.29 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
..++++++|+++.|++. +. .++++||.|.+|+.+||||+||+|||||+|+|+|... +.+|.+..+.. -..+
T Consensus 318 g~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~---v~ig 388 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET---VKIG 388 (530)
T ss_pred CCeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc---eEEE
Confidence 45689999999999763 23 3569999999999999999999999999999999998 77888754421 2356
Q ss_pred EEecCCCCCCCCccChhhhHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~ 175 (189)
|+.|....+. ...++.+++..
T Consensus 389 yf~Q~~~~l~-~~~t~~d~l~~ 409 (530)
T COG0488 389 YFDQHRDELD-PDKTVLEELSE 409 (530)
T ss_pred EEEehhhhcC-ccCcHHHHHHh
Confidence 7776643444 33577776554
No 351
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.31 E-value=2.6e-12 Score=121.36 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=63.1
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEEEEecCCCCCCCCccCh
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDA 169 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~~ltv 169 (189)
..|+|||+++++||+++|+|+||||||||+++|+|+..+-...+|++..++.. .++..++++|+. .+++ .+||
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~-~~~~-~lTV 116 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD-LFIP-TLTV 116 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc-ccCc-cCcH
Confidence 46789999999999999999999999999999999986111136776444322 134567888774 3444 4899
Q ss_pred hhhHHHHHHHc
Q 029679 170 MEDPKEAHARR 180 (189)
Q Consensus 170 ~enl~~~~~~~ 180 (189)
+||+.+....+
T Consensus 117 ~e~l~f~~~~~ 127 (617)
T TIGR00955 117 REHLMFQAHLR 127 (617)
T ss_pred HHHHHHHHhcC
Confidence 99999987643
No 352
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.1e-12 Score=105.31 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred eEEEeeeEEEcCcc---ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 77 ~l~~~~l~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
.|.++|++|+|--. .-.+..+++|||++..||++++-|+||+|||||+|+|.|-+. +++|.|+.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v 70 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILV 70 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEE
Confidence 58999999999321 123456779999999999999999999999999999999887 99999754
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.30 E-value=5.2e-12 Score=107.25 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=54.5
Q ss_pred CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
..+++|+++|+++.|++ +. .|+|+|++|++||--+|+|+||||||||+++|+|.+. |.+|.+
T Consensus 27 ~~~~li~l~~v~v~r~g--k~--iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~ 88 (257)
T COG1119 27 INEPLIELKNVSVRRNG--KK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDV 88 (257)
T ss_pred CCcceEEecceEEEECC--Ee--eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCce
Confidence 35578999999999987 33 5679999999999999999999999999999999997 666654
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.29 E-value=9.8e-12 Score=127.18 Aligned_cols=100 Identities=15% Similarity=0.031 Sum_probs=72.6
Q ss_pred eEEEeeeEEEcCcc---------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC
Q 029679 77 VVEARCMDEVYDAL---------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (189)
Q Consensus 77 ~l~~~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~ 147 (189)
.+.++||++..... ......|+|||+.+++|++++|+|+||||||||+++|+|+... -..+|.+..++..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 58999999887421 0123468899999999999999999999999999999998741 0246776433321
Q ss_pred -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (189)
Q Consensus 148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~ 179 (189)
.++..+|++|+. .+++ .+||+||+.+.+..
T Consensus 946 ~~~~~~~~~igyv~Q~d-~~~~-~lTV~E~L~~~a~l 980 (1470)
T PLN03140 946 KKQETFARISGYCEQND-IHSP-QVTVRESLIYSAFL 980 (1470)
T ss_pred CChHHhhhheEEEcccc-ccCC-CCcHHHHHHHHHHh
Confidence 124467888764 3444 48999999987644
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=99.29 E-value=4.3e-12 Score=122.06 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
...+|+++|+++.|++ +. .|+|+||+|.+|+++||||+||||||||+|+|+|+...-.|.+|++
T Consensus 174 ~~~~I~i~nls~~y~~--~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I 237 (718)
T PLN03073 174 AIKDIHMENFSISVGG--RD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI 237 (718)
T ss_pred CceeEEEceEEEEeCC--CE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence 3457999999999975 22 5779999999999999999999999999999999641012555654
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.28 E-value=7.5e-12 Score=128.05 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=65.1
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC---ceeeccCCCC-----CCCeEEEEecCCCCCCCC
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVK-----PPDVATVLPMDGFHLYLS 165 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~---~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~ 165 (189)
...|+|||+.+++||+++|+|+||||||||+|+|+|++. ++ +|++..++.. .++...|++|+. .+++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQND-VHVG- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccc-cCCC-
Confidence 346889999999999999999999999999999999997 65 7887443321 234567788763 3444
Q ss_pred ccChhhhHHHHHHHcC
Q 029679 166 QLDAMEDPKEAHARRG 181 (189)
Q Consensus 166 ~ltv~enl~~~~~~~g 181 (189)
.+||.||+.++++.++
T Consensus 253 ~lTV~EtL~f~a~~~~ 268 (1470)
T PLN03140 253 VMTVKETLDFSARCQG 268 (1470)
T ss_pred cCcHHHHHHHHHHhcC
Confidence 4999999999876543
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=1.6e-11 Score=116.30 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=76.4
Q ss_pred eEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCC
Q 029679 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPD 150 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~ 150 (189)
-+.+++++....... .....|+|||..+++||++||+|+||||||||+++|+|....-...+|.+..++.. -+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 477888887765431 12345789999999999999999999999999999999986322467887555421 244
Q ss_pred eEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
..+|+.|+ ..+++ .+||+|++.+.+..+
T Consensus 105 ~s~yV~Qd-D~l~~-~LTV~EtL~f~A~lr 132 (613)
T KOG0061|consen 105 ISGYVQQD-DVLLP-TLTVRETLRFSALLR 132 (613)
T ss_pred eeEEEccc-ccccc-cccHHHHHHHHHHhc
Confidence 67788876 44445 499999999988765
No 358
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.26 E-value=5.5e-12 Score=123.73 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=83.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------- 147 (189)
..+.++++++.|+...+ |++++||.|++||+.|+.|+|||||||+++||+|... +++|.++..+..
T Consensus 563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence 46899999999987422 8899999999999999999999999999999999998 999997553322
Q ss_pred -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184 (189)
Q Consensus 148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~ 184 (189)
.+...+|.||. ..++. .+|.+|.+.+..+.+|.++
T Consensus 637 ~~~~~iGyCPQ~-d~l~~-~lT~rEhL~~~arlrG~~~ 672 (885)
T KOG0059|consen 637 QVRKQLGYCPQF-DALWE-ELTGREHLEFYARLRGLPR 672 (885)
T ss_pred hhhhhcccCCch-hhhhh-hccHHHHHHHHHHHcCCCh
Confidence 23346788865 45555 5999999999999998764
No 359
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.6e-11 Score=110.75 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=55.3
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~ 144 (189)
-|+++|+.+.|.... +.|..||++|++||++-|+|.||||||||+++|+||+. |++|.|..+
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ld 383 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLD 383 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeEC
Confidence 599999999997631 45779999999999999999999999999999999999 999997443
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.22 E-value=2.5e-11 Score=123.80 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=63.9
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCc
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQ 166 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~ 166 (189)
..|+|||+.+++||+++|+|+||||||||+|+|+|+..+ ..+.+|++..++.. .+....+++|+ ..+++ .
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~-d~~~~-~ 152 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET-DVHFP-H 152 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccc-cccCC-C
Confidence 468899999999999999999999999999999999732 12578887544321 12346777776 34444 4
Q ss_pred cChhhhHHHHHHHc
Q 029679 167 LDAMEDPKEAHARR 180 (189)
Q Consensus 167 ltv~enl~~~~~~~ 180 (189)
+||.||+.++++.+
T Consensus 153 lTV~E~l~f~~~~~ 166 (1394)
T TIGR00956 153 LTVGETLDFAARCK 166 (1394)
T ss_pred CCHHHHHHHHHHhC
Confidence 89999999987644
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.21 E-value=2.1e-11 Score=125.08 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=59.6
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
+|+|+||+|++|++++|+|+||||||||+++|+|+++ +.+|.+...+ ...|++|+ ..++. .|+++|+.+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~-~~l~~--~Ti~eNI~~ 509 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQT-SWIMP--GTIKDNIIF 509 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCC-CccCC--ccHHHHHHh
Confidence 5789999999999999999999999999999999998 8999975433 36677876 34444 599999987
Q ss_pred HH
Q 029679 176 AH 177 (189)
Q Consensus 176 ~~ 177 (189)
+.
T Consensus 510 g~ 511 (1490)
T TIGR01271 510 GL 511 (1490)
T ss_pred cc
Confidence 53
No 362
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.20 E-value=1.9e-11 Score=91.97 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=48.3
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec-cCC-------CCCCCeEEEEecCCCCCCCCc
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQ-------VKPPDVATVLPMDGFHLYLSQ 166 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~-~~~-------~~~~~~~~vv~~~~~~l~~~~ 166 (189)
.+|++++|++.+|++++|+|+||||||||++++. . |.+. .+. ....+...+.+|+ .+.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---~------G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~-- 68 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---K------RKHRLVGDDNVEIREDSKDELIGRNPEL---GLE-- 68 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---C------CeEEEeeEeHHHhhhhhcCCEEEEechh---cch--
Confidence 4688999999999999999999999999999986 1 2221 111 1123445555544 332
Q ss_pred cChhhhHHHH
Q 029679 167 LDAMEDPKEA 176 (189)
Q Consensus 167 ltv~enl~~~ 176 (189)
.++++|+.++
T Consensus 69 ~ti~~Ni~~~ 78 (107)
T cd00820 69 IRLRLNIFLI 78 (107)
T ss_pred hhHHhhceee
Confidence 5799998874
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.17 E-value=2.5e-11 Score=98.41 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=33.0
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G 129 (189)
+.+++|+||++++|++++|+|+||||||||+|+|.+
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 456889999999999999999999999999999853
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.17 E-value=4.9e-11 Score=120.41 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
-|+++|++.+|..... .+|+||||+|++||.+||||..|||||||+.+|-++.. +.+|.|...+.+ .
T Consensus 1138 ~I~f~~~~~RYrp~lp--~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLP--LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCCc--chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 5999999999976422 46789999999999999999999999999999999998 899997554433 3
Q ss_pred CCeEEEEecCCCCCCCCccChhhhH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
|....++||+.. +|. -|++.|+
T Consensus 1213 RsrlsIIPQdPv-LFs--GTvR~NL 1234 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPV-LFS--GTVRFNL 1234 (1381)
T ss_pred HhcCeeeCCCCc-eec--Ccccccc
Confidence 456788998843 332 2455443
No 365
>PRK13409 putative ATPase RIL; Provisional
Probab=99.14 E-value=3e-11 Score=113.97 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=47.5
Q ss_pred eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
+++++|+.. .++|++++ .+++|+++||+|+||||||||+|+|+|+++ |+.|++.
T Consensus 78 ~~~~~yg~~---~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~ 131 (590)
T PRK13409 78 EPVHRYGVN---GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYE 131 (590)
T ss_pred CceEEecCC---ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcccc
Confidence 388899752 24688999 899999999999999999999999999998 8999874
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.09 E-value=1.7e-10 Score=118.85 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=58.7
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~ 175 (189)
+|+|+||+|++|++++|+|+||||||||+++|+|+++ +++|++... ...+|++|+. .++. .|+.+|+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~-~l~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQA-WIMN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCC-ccCC--CcHHHHHHc
Confidence 5789999999999999999999999999999999998 899987532 3467788764 3443 699999987
Q ss_pred H
Q 029679 176 A 176 (189)
Q Consensus 176 ~ 176 (189)
.
T Consensus 744 ~ 744 (1560)
T PTZ00243 744 F 744 (1560)
T ss_pred C
Confidence 4
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.1e-10 Score=105.59 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=70.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~ 148 (189)
.+.++++++.|... + ..|+++||++++|++++|||+||+||||++|+|.+++. +++|.+...+.+ .
T Consensus 262 ~v~F~~V~F~y~~~-r--~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPR-R--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeecccc-c--hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 47899999999763 2 24679999999999999999999999999999999999 999997443322 2
Q ss_pred CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679 149 PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~ 176 (189)
++.++++||| .-+|. -+.+.|+.++
T Consensus 336 R~aIg~VPQD-tvLFN--Dti~yni~yg 360 (497)
T COG5265 336 RRAIGIVPQD-TVLFN--DTIAYNIKYG 360 (497)
T ss_pred HHHhCcCccc-ceehh--hhHHHHHhcc
Confidence 4567888987 33443 3566665543
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.04 E-value=5.8e-10 Score=112.80 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=73.8
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
....++++|.++.++.. .....|+||||+|++|+.+||||+-|||||+|+.+|+|-++ ..+|.+...+. ..
T Consensus 515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia 585 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA 585 (1381)
T ss_pred CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE
Confidence 44579999999998762 22236889999999999999999999999999999999998 78888754432 67
Q ss_pred EEecCCCCCCCCccChhhhHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
|++|+.+ ++ ..|++||+.|+.
T Consensus 586 Yv~Q~pW-I~--ngTvreNILFG~ 606 (1381)
T KOG0054|consen 586 YVPQQPW-IQ--NGTVRENILFGS 606 (1381)
T ss_pred EeccccH-hh--CCcHHHhhhcCc
Confidence 7887633 33 368999999874
No 369
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.02 E-value=3.2e-10 Score=99.53 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=48.3
Q ss_pred EEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (189)
Q Consensus 112 ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~ 180 (189)
|+|+||||||||+|+|+|+++ +++|++...+.. ..+..++++|+ +.+++ .+++.+|+.+++...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~-~~l~~-~~tv~enl~~~~~~~ 70 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQS-YALFP-HMTVEENVAFGLKMR 70 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecC-ccccC-CCcHHHHHHHHHhhc
Confidence 689999999999999999998 999997443311 12345677765 55666 489999999876543
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.95 E-value=5.4e-10 Score=93.22 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=29.2
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHH
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~ 124 (189)
+.+|++|||+|++||+++|+|+||||||||+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999999999999999996
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=100.49 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=54.0
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
...|.++|++..-++.. .-|++.+|.+++|+-+-|.|+||||||||+|+|+||-+ ..+|++.
T Consensus 390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~ 451 (604)
T COG4178 390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRIS 451 (604)
T ss_pred cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCcee
Confidence 46799999999987743 34679999999999999999999999999999999998 6777753
No 372
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.90 E-value=4.2e-09 Score=98.44 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=68.1
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~ 153 (189)
.+.+|++++|+..-+.. .. ..++|+||+|..|+.+-|.|+||||||+|+|+|+||.+ ..+|++............
T Consensus 430 ~Dn~i~~e~v~l~tPt~-g~-~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lf 504 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN-GD-LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLF 504 (659)
T ss_pred ccceEEeeeeeecCCCC-Cc-eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceE
Confidence 34689999999887663 22 23569999999999999999999999999999999997 677876433222223344
Q ss_pred EEecCCCCCCCCccChhhhHHHHH
Q 029679 154 VLPMDGFHLYLSQLDAMEDPKEAH 177 (189)
Q Consensus 154 vv~~~~~~l~~~~ltv~enl~~~~ 177 (189)
++||..+ .+.-|.++.+.++.
T Consensus 505 flPQrPY---mt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 505 FLPQRPY---MTLGTLRDQVIYPL 525 (659)
T ss_pred EecCCCC---ccccchhheeeccC
Confidence 5565422 22345666665553
No 373
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=1.5e-09 Score=91.55 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=52.2
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|+++.++|++..+......+.+||+||+++.+||+-|+||+||||||-++++|+|..+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 5678999999998654456789999999999999999999999999999999999886
No 374
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.88 E-value=1.2e-09 Score=100.74 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=37.8
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCce-eecc
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD 143 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G-~i~~ 143 (189)
.+|++|||++++||+++|+|+||||||||+| +|+.. +++| .+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~l 64 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFL 64 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEE
Confidence 4688999999999999999999999999999 67776 6666 4543
No 375
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.85 E-value=4.9e-09 Score=85.95 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=31.7
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++|++.+| +++|+|+||||||||+++|+|+++
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999 999999999999999999999985
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.82 E-value=2.9e-09 Score=98.88 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=55.7
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
+.|++.+.|+++.|.+. . ....+++|.|..++.+++|||||+|||||+|+|+|.+. |..|.+..
T Consensus 386 p~pvi~~~nv~F~y~~~--~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~ 449 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN--P-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSR 449 (614)
T ss_pred CCCeEEEeccccCCCCc--c-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccc
Confidence 46799999999999763 2 34569999999999999999999999999999999998 88887643
No 377
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.1e-08 Score=102.66 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=72.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-----CCCCe
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDV 151 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-----~~~~~ 151 (189)
+..+.|+.+.......+...|+||+=-+++|-.+||+|+|||||||||++|+|-...= .-+|.+..++. .-+++
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccc
Confidence 4555555544422112334578999999999999999999999999999999975410 12355433332 13567
Q ss_pred EEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (189)
Q Consensus 152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~g 181 (189)
.+|+.|++.|. + .+||+|-+.+.+.+|-
T Consensus 866 ~GYvqQ~DiH~-~-~~TVrESL~fSA~LRl 893 (1391)
T KOG0065|consen 866 SGYVEQQDIHS-P-ELTVRESLRFSAALRL 893 (1391)
T ss_pred cceeecccccC-c-ccchHHHHHHHHHHcC
Confidence 89999887777 3 5999999999887763
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.78 E-value=1.5e-08 Score=81.97 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=50.6
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEEEEecCCCCCCCCccChhhhH
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDP 173 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~~ltv~enl 173 (189)
-+.+.+++|+.++|+|++|||||||+++|+|+++ ++.+.+...+.. ......+..+..........+..+.+
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 4567789999999999999999999999999997 666665333211 12334444333222122236677766
Q ss_pred HHHHH
Q 029679 174 KEAHA 178 (189)
Q Consensus 174 ~~~~~ 178 (189)
...++
T Consensus 94 ~~~lR 98 (186)
T cd01130 94 RSALR 98 (186)
T ss_pred HHHhc
Confidence 66554
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.64 E-value=3.8e-08 Score=80.98 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=46.8
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~ 145 (189)
++++++|...- .|-.+|.++..||++=+|||||||||||+-.++|+. +.+|+|...+
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G 59 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAG 59 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECC
Confidence 57788876543 133789999999999999999999999999999999 6788874433
No 380
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.63 E-value=3.1e-08 Score=83.28 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=46.9
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
+-.|++.++.+.|... .++.. |+|++++.|...-+||.||+|||||+|+|+|-.
T Consensus 11 ~~aievsgl~f~y~~~-dP~~~--Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh 64 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-DPIFF--DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH 64 (291)
T ss_pred cceEEEeccEEecccC-CceEE--EEeeccCCCceEEEEecCCCchhhhHHHhcCcc
Confidence 3469999999999764 34444 999999999999999999999999999999965
No 381
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.63 E-value=2.9e-08 Score=90.42 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=40.5
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-----cCCCceee
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKASS 141 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-----~~p~~G~i 141 (189)
.++||||.+++|++++|+|+||+||||++|+|+|.... +-|++|.+
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v 448 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV 448 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence 57899999999999999999999999999999998752 45677764
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=5.7e-08 Score=89.19 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=56.5
Q ss_pred CCCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 72 ~~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
....|+|-+.+|++.|++. +.++. +++|.|.--..++||||||.|||||+++|.|-+. |+.|....
T Consensus 581 ~L~PPvLGlH~VtFgy~gq-kpLFk--kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RK 646 (807)
T KOG0066|consen 581 KLNPPVLGLHDVTFGYPGQ-KPLFK--KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRK 646 (807)
T ss_pred CCCCCeeecccccccCCCC-Cchhh--cccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhc
Confidence 3456899999999999764 44444 8999999999999999999999999999999998 88887543
No 383
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.59 E-value=9.1e-08 Score=89.18 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=52.4
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~ 157 (189)
|.++|+-..-+.. + + .+..++|+|.+|--+-|.||||||||+|.|+|.||.+ ...|.+... ++....|+||
T Consensus 482 I~lenIpvItP~~-~-v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P---~~~~mFYIPQ 552 (728)
T KOG0064|consen 482 IILENIPVITPAG-D-V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIP---RPNNIFYIPQ 552 (728)
T ss_pred eEEecCceeccCc-c-e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecC---CCcceEeccC
Confidence 6777776666553 2 2 3569999999999999999999999999999999997 444443221 2333555565
Q ss_pred C
Q 029679 158 D 158 (189)
Q Consensus 158 ~ 158 (189)
.
T Consensus 553 R 553 (728)
T KOG0064|consen 553 R 553 (728)
T ss_pred C
Confidence 4
No 384
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.58 E-value=5.8e-08 Score=80.89 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=32.5
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
|+++|.. .|++. .++++++ |++++|+||||||||||+++|++++
T Consensus 4 i~~~nfk-sy~~~----~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 4 VIIQGFK-SYKDQ----TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEeCcc-CcccC----cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4555553 45431 2344655 7899999999999999999999775
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.57 E-value=5.8e-08 Score=80.55 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=34.9
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
|+++|.. .|++. .++++++| ++++|+||||||||||+++|...+
T Consensus 6 l~l~nfk-~~~~~----~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 6 LVLENFK-SYAGE----QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred EEEECcc-cCCCC----eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh
Confidence 6777776 66542 35668887 899999999999999999998543
No 386
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=8.1e-08 Score=87.89 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=36.2
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.+++++ |++.+|++++|+|+||+|||||+++|+|+.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 5688999 9999999999999999999999999999986
No 387
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=1.1e-07 Score=87.21 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=50.1
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.++.+++++.|..+ +.+++.++ ++.+|+.++|+|+||||||||+++|+++.. ++.|.+
T Consensus 138 ~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv 196 (450)
T PRK06002 138 PAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVI 196 (450)
T ss_pred CCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeee
Confidence 468999999999653 34566774 999999999999999999999999999987 776665
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.55 E-value=4.6e-08 Score=80.64 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=36.6
Q ss_pred eEEEeeeEEEcCccceeecccccceeEec-CCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~-~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
.|+++|+. .|... .+|+|... +|++++|+|+||||||||+++|++.+
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 47888887 55431 25667644 58999999999999999999999654
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.54 E-value=8.4e-08 Score=78.91 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=28.1
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
++|++|+ .|++++|+||||||||||+|+|+|..
T Consensus 17 ~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 17 ANDIDME--KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cceEEEc--CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3455555 47999999999999999999999977
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=7.1e-08 Score=89.33 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=44.3
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G 129 (189)
.-|.+.+++..|++ +. .|.+-++++..|..+||||+||+|||||||+|+.
T Consensus 79 ~Di~~~~fdLa~G~--k~--LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG--KI--LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cceeeeeeeeeecc--hh--hhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 35888999999987 33 3559999999999999999999999999999998
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.51 E-value=1.3e-07 Score=88.15 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=47.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~ 133 (189)
.-+.++++++.|.+. ..+.|+.|.+.+|+.+||+|+|||||||++++|+|-..|
T Consensus 74 ~dvk~~sls~s~~g~----~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV----ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred ccceeeeeeeccCCc----eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 359999999999762 345699999999999999999999999999999998873
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.48 E-value=5.4e-07 Score=83.04 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC----
Q 029679 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (189)
Q Consensus 73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~---- 148 (189)
+..++|++++++..-.. .+.+|++|||+|++|||+||.|-+|-|-+.|+.+|+|+.+ +.+|++...+...
T Consensus 253 pg~~vL~V~~L~v~~~~---~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~ 326 (501)
T COG3845 253 PGEVVLEVEDLSVKDRR---GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRL 326 (501)
T ss_pred CCCeEEEEeeeEeecCC---CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccC
Confidence 45789999999977533 2467889999999999999999999999999999999997 6778874443221
Q ss_pred ------CCeEEEEecCCC--CCCCCccChhhhHHHHHH
Q 029679 149 ------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA 178 (189)
Q Consensus 149 ------~~~~~vv~~~~~--~l~~~~ltv~enl~~~~~ 178 (189)
..-..++|.+.+ .+.+ .+++.+|+.+...
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~-~~sl~eN~vL~~~ 363 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRH 363 (501)
T ss_pred CHHHHHhcCCccCChhhccCcccc-CccHHHHhhhhhc
Confidence 123467787643 2344 4899999988654
No 393
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.44 E-value=1.2e-07 Score=80.72 Aligned_cols=79 Identities=41% Similarity=0.609 Sum_probs=62.3
Q ss_pred ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE 183 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~ 183 (189)
-...+.+|++|+.|+||||++.++..-.+ ....-+.. ....++.++|+++||+....++.++|+..+++++|.+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp----~~~~~f~~--e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWP----VNVNKFAQ--ESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcc----hhhhhhhh--hhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 34468899999999999999999988653 22111111 1234677799999999988899999999999999999
Q ss_pred CCCCC
Q 029679 184 VPTLG 188 (189)
Q Consensus 184 ~~~~~ 188 (189)
|+|+.
T Consensus 190 wTFD~ 194 (323)
T KOG2702|consen 190 WTFDS 194 (323)
T ss_pred cccCH
Confidence 99984
No 394
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.41 E-value=2.7e-07 Score=75.37 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.7
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
..++++.+|++++|+|+||||||||+|+|++..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 568888899999999999999999999999554
No 395
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.41 E-value=2.1e-07 Score=76.33 Aligned_cols=28 Identities=29% Similarity=0.595 Sum_probs=26.6
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++|++++|+|+||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999986
No 396
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.38 E-value=6.2e-07 Score=81.46 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=46.6
Q ss_pred eEEEeeeEEEcCccceeecccc-----------cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~-----------~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.+.++||+..|+... ..|+ |+++.|.+|+.++|+|++|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999997631 2453 9999999999999999999999999999999875
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.37 E-value=3.8e-07 Score=75.42 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=33.4
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
..+|++|++..|++++|+|+||+||||++|+|+++.
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356999999999999999999999999999999876
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.36 E-value=3.7e-07 Score=74.59 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=28.6
Q ss_pred cceeEecCCc-EEEEEcCCCCcHhHHHHHHH
Q 029679 99 ALASNVNVKH-IVGLAGPPGAGKSTLAAEVV 128 (189)
Q Consensus 99 ~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~ 128 (189)
++||++.+|+ +++|+|+||||||||+|+|+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 8899999995 89999999999999999998
No 399
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.33 E-value=4.5e-07 Score=77.92 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=30.8
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l 127 (189)
..|+|||++|+.|.+++|.|.||||||||++.+
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 467899999999999999999999999999966
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.33 E-value=5.2e-07 Score=82.99 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=45.5
Q ss_pred CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (189)
Q Consensus 75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~ 140 (189)
..++++.++.|.|+++. |+==.=+|..||+++++||||-|||||.++|+|.++ |++|.
T Consensus 340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~ 397 (591)
T COG1245 340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS 397 (591)
T ss_pred ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC
Confidence 34677778888887642 111234577789999999999999999999999999 88886
No 401
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.32 E-value=9.3e-07 Score=60.38 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=28.9
Q ss_pred cceeEecC-CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~-Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 45667765 56999999999999999999988874
No 402
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.32 E-value=5e-07 Score=72.93 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 599999999999999999999999997
No 403
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1e-06 Score=81.83 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C---
Q 029679 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P--- 148 (189)
Q Consensus 74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~--- 148 (189)
..+++++++++..- .++||||++++|||+||.|--|+|+|-|+++|.|+.+ +.+|++...+.. .
T Consensus 260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence 56789999987442 2459999999999999999999999999999999887 778887544321 1
Q ss_pred ----CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679 149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEA 176 (189)
Q Consensus 149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~ 176 (189)
..-..|+|.|.- .++. .+++.+|+.++
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l-~~sI~~Ni~l~ 361 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVL-DMSIAENITLA 361 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcC-CCcHHHheehH
Confidence 113466666532 3444 48999999887
No 404
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.30 E-value=9.8e-07 Score=74.36 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=32.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|+++|. +.|.+. .+|...++ +++|+|+||||||||+.+|++++.
T Consensus 4 i~l~nf-~~~~~~---------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 4 LELENF-KSYKGR---------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred EEEECc-cccCCC---------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC
Confidence 667776 455431 12333334 999999999999999999999996
No 405
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.29 E-value=6.4e-07 Score=72.64 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.3
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++|++++|+|+||||||||+++|+++++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 406
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.28 E-value=5.8e-07 Score=72.50 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|++++|+|+||||||||+|+|+++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
No 407
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.26 E-value=2.2e-06 Score=70.12 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.++.+++|+|+||||||||++.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999884
No 408
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.26 E-value=1.2e-06 Score=73.14 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++||.|+||||||||++.|++++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999996
No 409
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.24 E-value=1.1e-06 Score=77.86 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=38.0
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~ 140 (189)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ++.+.
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v 99 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV 99 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 4567788 9999999999999999999999999999987 55544
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=2.4e-06 Score=79.31 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=52.1
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHH
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~ 174 (189)
..+++.++.+.+|.+++|||+||+||||++..|++.+. ...|. ....++..|.+ ...+++++.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHH
Confidence 34567778888999999999999999999999999884 33221 12345555532 256788888
Q ss_pred HHHHHcCCCC
Q 029679 175 EAHARRGGEV 184 (189)
Q Consensus 175 ~~~~~~g~~~ 184 (189)
+.....+.+.
T Consensus 307 ~~AeilGVpv 316 (484)
T PRK06995 307 IYGKILGVPV 316 (484)
T ss_pred HHHHHhCCCe
Confidence 7777666543
No 411
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.23 E-value=8.8e-07 Score=81.12 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=47.7
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
.++.+.++..|..+ +.+++++ |++.+|+.++|+|+||+|||||+++|+++.. ++.+.+
T Consensus 129 ~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi 186 (433)
T PRK07594 129 AMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVL 186 (433)
T ss_pred ceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEE
Confidence 46667777777432 4577888 9999999999999999999999999999987 666654
No 412
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.21 E-value=1.1e-06 Score=73.95 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
..+++|||+||||||||+++|++++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 55999999999999999999999986
No 413
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=1.4e-06 Score=80.01 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=39.6
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ++.|.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI 189 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVI 189 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEE
Confidence 4567899 9999999999999999999999999999997 676765
No 414
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.20 E-value=1.5e-06 Score=71.58 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=24.1
Q ss_pred ceeEecCCcEEEEEcCCCCcHhHHHHHHH
Q 029679 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (189)
Q Consensus 100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~ 128 (189)
.++++.+| +++|+|+||||||||+++|.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556667 99999999999999999996
No 415
>PRK08149 ATP synthase SpaL; Validated
Probab=98.19 E-value=1.7e-06 Score=79.14 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=35.6
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.+++++ |++.+|++++|+|+||+|||||+++|+++..
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 4578899 9999999999999999999999999999886
No 416
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=1.8e-06 Score=72.01 Aligned_cols=34 Identities=44% Similarity=0.632 Sum_probs=29.6
Q ss_pred ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~ 140 (189)
-.+..++||+|+||||||||++.|+++++ +++|.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC
Confidence 34568999999999999999999999998 66665
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=4.7e-06 Score=84.26 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=66.8
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee-ccCCC----CCCCeEEEEecCCCCCCCCccC
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV----KPPDVATVLPMDGFHLYLSQLD 168 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i-~~~~~----~~~~~~~vv~~~~~~l~~~~lt 168 (189)
+..++|++.-+++|+++-++|+.|||||||+++|+|-+.......|++ +++.. ..++...|+.|++.|.- .||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p--~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP--ELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccc--eeE
Confidence 456889999999999999999999999999999999887544444554 22211 13455667777655543 599
Q ss_pred hhhhHHHHHHHcCCCC
Q 029679 169 AMEDPKEAHARRGGEV 184 (189)
Q Consensus 169 v~enl~~~~~~~g~~~ 184 (189)
|+|-+.|+++-++...
T Consensus 206 VreTldFa~rck~~~~ 221 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGS 221 (1391)
T ss_pred EeehhhHHHhccCCcc
Confidence 9999999987765533
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.14 E-value=2e-06 Score=68.36 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|++++|+|+||||||||++.|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999875
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.13 E-value=5.1e-06 Score=72.55 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=34.2
Q ss_pred ceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+++.++.|+.++|+|++|||||||+++|+++++ +..+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv 175 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERII 175 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEE
Confidence 567888999999999999999999999999997 555543
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=3.2e-06 Score=83.77 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=37.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l 127 (189)
++|++++++. ..|+|+||+|++|++++|+|.||||||||++-+
T Consensus 611 ~~l~l~~~~~---------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~ 653 (924)
T TIGR00630 611 KFLTLKGARE---------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT 653 (924)
T ss_pred ceEEEEeCcc---------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 4789998862 146799999999999999999999999999843
No 421
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.12 E-value=2.9e-06 Score=71.20 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=35.9
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
..|++|.+.+|++++|.|+||+||||++|+|++..- .++.|..
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~--la~~G~~ 63 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI--MAQIGSF 63 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH--HHhCCCE
Confidence 459999999999999999999999999999999441 2555543
No 422
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.10 E-value=2.4e-06 Score=67.81 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|++++|+|+||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.09 E-value=2.8e-06 Score=70.74 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=30.7
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
.+|++|+..+ ++++|+|+||+||||++|+|+++.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 4589999887 999999999999999999998765
No 424
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.08 E-value=3.4e-06 Score=78.65 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=42.6
Q ss_pred EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.|+++.|+.. .+++++++.+..|+.+.|+|+||||||||++.|.|+++
T Consensus 187 ~~d~~~v~Gq~----~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 187 QHDLSDVIGQE----QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred ccCeEEEECcH----HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 35788777652 35668999999999999999999999999999999998
No 425
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.07 E-value=3.2e-06 Score=77.28 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=39.1
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.+++++ |.+.+|+.++|+|+||+|||||+++|+++.. ++.+.+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi 176 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVI 176 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEE
Confidence 4578899 9999999999999999999999999999987 666554
No 426
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.07 E-value=4.1e-06 Score=76.96 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=39.1
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi 194 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVI 194 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEE
Confidence 4578899 9999999999999999999999999999987 665554
No 427
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.07 E-value=3.3e-06 Score=77.57 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=37.7
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~ 140 (189)
+.+++++ |.+.+|+.++|+|+||+|||||+++|+++.. ++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v 193 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNV 193 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEE
Confidence 4567788 9999999999999999999999999999987 55443
No 428
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.8e-06 Score=77.33 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.6
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.++|++ |.+.+|+.++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678888 9999999999999999999999999999876
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.05 E-value=2.9e-06 Score=68.72 Aligned_cols=24 Identities=42% Similarity=0.901 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++||+|+||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999973
No 430
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.04 E-value=4e-06 Score=72.38 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
++||+|+||||||||+++|+++++ +.++.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi 31 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVI 31 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceEEE
Confidence 589999999999999999999997 5556543
No 431
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=3.8e-06 Score=77.13 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=33.8
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 4556555 9999999999999999999999999999875
No 432
>PLN02796 D-glycerate 3-kinase
Probab=98.02 E-value=2e-06 Score=76.74 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=32.8
Q ss_pred cccccceeEe---cCCcE-----EEEEcCCCCcHhHHHHHHHHhhc
Q 029679 95 LPTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 95 ~~l~~vsl~i---~~Ge~-----~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
..++++++.+ ++|+. +||+|+||||||||++.|.+++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3566888887 56776 99999999999999999999996
No 433
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.01 E-value=6.1e-06 Score=75.26 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=38.5
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi 168 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVI 168 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEE
Confidence 4567888 9999999999999999999999999999887 555553
No 434
>PRK05922 type III secretion system ATPase; Validated
Probab=98.00 E-value=7.1e-06 Score=75.25 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=36.8
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+.++|. -+.+.+|+.++|+|+||+|||||+++|++..+ ++.+.+
T Consensus 145 Ir~ID~-ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi 188 (434)
T PRK05922 145 IKAIDA-FLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVI 188 (434)
T ss_pred ceeecc-eEEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEE
Confidence 445555 59999999999999999999999999999886 555543
No 435
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.99 E-value=3.9e-06 Score=77.14 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.++|++ |++.+|+.++|+|+||+|||||+++|+|+.+
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~ 189 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAE 189 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccc
Confidence 5678787 9999999999999999999999999999884
No 436
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.99 E-value=7e-06 Score=65.01 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.1
Q ss_pred ccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 98 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++++++.+| +.+|+|+||+||||++.+|.-++.
T Consensus 11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4667777776 889999999999999999998885
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=9.2e-06 Score=74.47 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=46.4
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
.++-+.+++.|..+ +.++|+ .|.+.+|+.++|+|+||+|||||+++|++... ++.+.+
T Consensus 130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI 187 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVI 187 (432)
T ss_pred chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEE
Confidence 45666777777533 345556 59999999999999999999999999999987 666654
No 438
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=7e-06 Score=68.65 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.1
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHh
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl 130 (189)
.+|+++++++++++.|.|+||+||||++|+|+-.
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 4699999999999999999999999999998743
No 439
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.98 E-value=7.7e-06 Score=74.54 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=40.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++-..++..|..+ +.+++.+ |.+.+|++++|+|+||+|||||+++|+++..
T Consensus 112 ~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~ 162 (411)
T TIGR03496 112 LKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE 162 (411)
T ss_pred HhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3334455555432 4566677 9999999999999999999999999999887
No 440
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=6.7e-06 Score=75.40 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=34.9
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.+++++ +++.+|++++|+|+||+|||||+++|++...
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~ 182 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL 182 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3578899 9999999999999999999999999998775
No 441
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.97 E-value=6.4e-06 Score=75.22 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=37.4
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
.++ |.+|.+.+|+.++|+|+||+|||||+++|+++.. ++.|.+
T Consensus 129 ~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi 171 (418)
T TIGR03498 129 RVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVI 171 (418)
T ss_pred EEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEE
Confidence 444 5799999999999999999999999999999987 666554
No 442
>PTZ00301 uridine kinase; Provisional
Probab=97.96 E-value=1.1e-05 Score=67.08 Aligned_cols=24 Identities=33% Similarity=0.847 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
-++||.|+||||||||++.|...+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 478999999999999999887655
No 443
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.96 E-value=7.1e-06 Score=81.53 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=38.0
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHH
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~ 128 (189)
+.|++++++. ..|+|+||+|++||+++|+|.||||||||++.+.
T Consensus 613 ~~L~v~~l~~---------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 613 KFLKLKGARE---------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred ceEEecCCcc---------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4788888851 1367999999999999999999999999999874
No 444
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.95 E-value=8.1e-06 Score=74.96 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=35.5
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.+++++ |++.+|+.++|+|+||+|||||+++|++...
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE 187 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC
Confidence 4578899 9999999999999999999999999999886
No 445
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.94 E-value=1.2e-05 Score=75.11 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=36.8
Q ss_pred cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
.-+||+-+.+ ++.+++|.|+|||||||+++.|+..+.-.+.++|.+
T Consensus 273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 3467999988 889999999999999999999997664333555554
No 446
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.92 E-value=7.8e-06 Score=71.34 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-.++||.|+||||||||+++|.+++.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999996
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=1e-05 Score=59.94 Aligned_cols=24 Identities=50% Similarity=0.963 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++|.|++||||||+++.|+..+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999999764
No 448
>PRK06820 type III secretion system ATPase; Validated
Probab=97.88 E-value=1.5e-05 Score=73.32 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=35.3
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.++|++ +++.+|+.++|+|+||+|||||+++|+++..
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA 188 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC
Confidence 5678888 9999999999999999999999999999876
No 449
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=9e-06 Score=74.90 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=33.7
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+.++ |.-|++.+|++++|+|+||+|||||+++|+|+..
T Consensus 163 iraI-D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~ 200 (455)
T PRK07960 163 VRAI-NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ 200 (455)
T ss_pred ceee-eecccccCCcEEEEECCCCCCccHHHHHHhCCCC
Confidence 3455 4459999999999999999999999999999987
No 450
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.86 E-value=1.5e-05 Score=83.40 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l 127 (189)
++..++...+... ..|+||||+|++|++++|+|+||||||||+..+
T Consensus 936 l~~~~i~i~~~~~----~~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 936 PVPADITIKNAYQ----HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred cccceEEEecccc----ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 4455666665431 247799999999999999999999999988776
No 451
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.86 E-value=1.2e-05 Score=69.47 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~ 143 (189)
..++|+|++|||||||+++|+|++. ++.|++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~ 144 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGL 144 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEE
Confidence 5789999999999999999999998 88888643
No 452
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=1.5e-05 Score=57.95 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.+..+.|+|++|+||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999986
No 453
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=1.5e-05 Score=63.27 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++|++++|+|.+||||||+++.|++.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999985
No 454
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.85 E-value=1.9e-05 Score=64.79 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=28.5
Q ss_pred ccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 98 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++++++.+| +.+|+|+||+|||||+.+|...+.
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~ 46 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG 46 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc
Confidence 3677777777 778999999999999999986654
No 455
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.84 E-value=1.2e-05 Score=84.10 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=35.8
Q ss_pred CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHH
Q 029679 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125 (189)
Q Consensus 76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r 125 (189)
+.|++++++. ..|+++||+|++||+++|.|+||||||||++
T Consensus 599 ~~L~l~~~~~---------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 599 GTLTLSKATK---------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CeEEEecccc---------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 4688888752 1467999999999999999999999999999
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=97.83 E-value=9.3e-06 Score=72.50 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=36.9
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
++.+.-.+.+|++++|+|+||+|||||+++|+|+.. +..|.+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~ 227 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVR 227 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEE
Confidence 345566678899999999999999999999999998 7788764
No 457
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.81 E-value=1.9e-05 Score=64.30 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++|++++|+|.||||||||++.|++++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999874
No 458
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.77 E-value=1.3e-05 Score=63.61 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHhHHHHHHH
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVV 128 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~ 128 (189)
..+++|+|++||||||+++.|+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 459
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=2.3e-05 Score=70.64 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=33.8
Q ss_pred ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
+..++++++.+.+|++++|+|++|+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566788899999999999999999999999999865
No 460
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.76 E-value=4.1e-05 Score=76.92 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=37.5
Q ss_pred EEEeeeEEEcCccceeecccccceeE---ecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASN---VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~---i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|.++|+....+.. .|+|+ +..+.+++|+|+|||||||++.+|+..+.
T Consensus 6 l~~~nf~s~~~~~--------~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLy 55 (1047)
T PRK10246 6 LRLKNLNSLKGEW--------KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALY 55 (1047)
T ss_pred EEeecceeEcCCc--------eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7778877554431 58888 45589999999999999999999997764
No 461
>PRK09183 transposase/IS protein; Provisional
Probab=97.76 E-value=2.1e-05 Score=67.22 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred EEeeeEEEcCcc--ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 79 EARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 79 ~~~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
.+++..+.|... ...+..|.+++| +.+|+.+.|+|++|+|||+|+.+|+...
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 344555555322 123456778899 9999999999999999999999997664
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=2.6e-05 Score=68.79 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=30.2
Q ss_pred ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
-.+|++++|+|+||+||||++..|++++. ..++++
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V 145 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKV 145 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeE
Confidence 35789999999999999999999999996 555554
No 463
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.75 E-value=2.3e-05 Score=63.57 Aligned_cols=24 Identities=50% Similarity=0.958 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++||.|+||||||||++.|..+++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=3e-05 Score=71.66 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=43.1
Q ss_pred eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
-|.++|.+.+-.+ +.++. +.||.|-.|..+|||||||-|||||++-|+.--
T Consensus 264 DIKiEnF~ISA~G--k~LFv--nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFV--NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred cceeeeeeeeccc--ceeee--ccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4888998887655 34454 899999999999999999999999999998643
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=2.6e-05 Score=71.33 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=25.9
Q ss_pred ecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
+.+|++++|||+||+||||+++.|++..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999964
No 466
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.73 E-value=5.1e-05 Score=63.73 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.6
Q ss_pred ecCCcEEEEEcCCCCcHhHH-HHHHHHhhc
Q 029679 104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRIN 132 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL-~r~l~Gl~~ 132 (189)
+++|+++.|+|++||||||| +++++++.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999 699998875
No 467
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.73 E-value=4.2e-05 Score=60.45 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.6
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
..++.+..+.++.|+|+|||||||++++|...+-
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566666677999999999999999999877764
No 468
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.73 E-value=2e-05 Score=62.64 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=29.0
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G 129 (189)
+|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 36688888887766 8999999999999999987
No 469
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.71 E-value=2.9e-05 Score=67.54 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=34.2
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.++++++...++.+++|+|++|||||||++.|++.+.
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999874
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.70 E-value=3.9e-05 Score=59.85 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=27.5
Q ss_pred EecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 103 ~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.+++|.+++|.|+.|||||||+|.|+..+.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999999999875
No 471
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.70 E-value=4.5e-05 Score=63.35 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.8
Q ss_pred ceeEecCC--cEEEEEcCCCCcHhHHHHHHHH
Q 029679 100 LASNVNVK--HIVGLAGPPGAGKSTLAAEVVR 129 (189)
Q Consensus 100 vsl~i~~G--e~~~ivG~sGsGKSTL~r~l~G 129 (189)
.++.+.++ .++.|+|+||+|||||+|.|+.
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 35555555 7899999999999999999984
No 472
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.69 E-value=3.4e-05 Score=62.01 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++++++++|+||+|||||++.|.+-..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 358999999999999999999999754
No 473
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=4.6e-05 Score=63.82 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=32.7
Q ss_pred cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
-+|++|++++|+++.|.|+||+||||++++|++..
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 35999999999999999999999999999999975
No 474
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=3.1e-05 Score=75.37 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=33.3
Q ss_pred ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.++++++.+.+|+++++||+||+||||++..|++.+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 4567888888899999999999999999999999874
No 475
>PRK08233 hypothetical protein; Provisional
Probab=97.68 E-value=3.9e-05 Score=60.52 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++.+++|.|++|||||||++.|+..+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999999874
No 476
>PRK07429 phosphoribulokinase; Provisional
Probab=97.68 E-value=4e-05 Score=67.89 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-++||.|+||||||||++.|+++++
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhc
Confidence 3789999999999999999999987
No 477
>PRK15494 era GTPase Era; Provisional
Probab=97.68 E-value=3.6e-05 Score=68.22 Aligned_cols=51 Identities=31% Similarity=0.304 Sum_probs=43.1
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCc-------EEEEEcCCCCcHhHHHHHHHHhh
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH-------IVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-------~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
++.+++++.|+.. . .++..++|.++.|+ .++|+|.+|+|||||++.|.|-.
T Consensus 19 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 19 TEALAAAVREDAS-T--GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred cccccccccCCCC-c--ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 6778888888742 2 25679999999999 99999999999999999998853
No 478
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.67 E-value=3e-05 Score=60.00 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++|+|+||||||||++.|++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 368999999999999999999875
No 479
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=4.3e-05 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=26.4
Q ss_pred ecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.++|.++.|+|.+||||||+++.|+..+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998885
No 480
>PRK00098 GTPase RsgA; Reviewed
Probab=97.67 E-value=3.7e-05 Score=66.95 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (189)
Q Consensus 106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~ 142 (189)
+|.+++|+|+||+|||||++.|+|... ...|.+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~---~~~g~v~ 196 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE---LKTGEIS 196 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC---CCCccee
Confidence 589999999999999999999999886 5566653
No 481
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.67 E-value=5.9e-05 Score=65.43 Aligned_cols=64 Identities=31% Similarity=0.402 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCCCCC
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTL 187 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~~~~ 187 (189)
-++||.|+.|+||||+++.+.-++... + ....+.++++|||+....++.... .+.++|.|++||
T Consensus 83 fIIgiaGsvavGKST~ar~L~~ll~~~-~-----------~~~~v~lvpmDGFhy~n~~L~~~g----lm~rKGfPeSyD 146 (283)
T COG1072 83 FIIGIAGSVAVGKSTTARILQALLSRW-P-----------ESPKVDLVTMDGFHYPNAVLDERG----LMARKGFPESYD 146 (283)
T ss_pred EEEEeccCccccHHHHHHHHHHHHhhC-C-----------CCCceEEEeccccccCHhHhhhcc----ccccCCCCcccc
Confidence 478999999999999999999999621 1 112456789999987655444221 345678888876
No 482
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.66 E-value=3.7e-05 Score=66.55 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=31.4
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
.+...+. +++++++|+||+|||||++.|.|... +..|.+
T Consensus 154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~---~~~g~v 192 (287)
T cd01854 154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLD---LATGEI 192 (287)
T ss_pred HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhh---ccccce
Confidence 3444454 58999999999999999999999987 556654
No 483
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.66 E-value=4.5e-05 Score=61.10 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=28.6
Q ss_pred eeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 101 sl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+-..++|+++.|.|.+||||||+++.|.+.+.
T Consensus 12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999984
No 484
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=4.3e-05 Score=61.22 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.++|+|+||||||||++.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 485
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.65 E-value=1.7e-05 Score=63.13 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=18.8
Q ss_pred EcCCCCcHhHHHHHHHHhhc
Q 029679 113 AGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 113 vG~sGsGKSTL~r~l~Gl~~ 132 (189)
+|+||||||||+++|++.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 59999999999999999985
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.65 E-value=5.6e-05 Score=62.00 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 109 ~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++|.|.||||||||++.|+..+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 579999999999999999999873
No 487
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.64 E-value=9.2e-05 Score=70.79 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=36.3
Q ss_pred EEEeeeEEEcCccceeecccccceeEecCCc-EEEEEcCCCCcHhHHHHHHHHhh
Q 029679 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
|.++|+...++. +.++|....|+ ++.|+|+||+|||||+++|.-.+
T Consensus 6 l~l~nf~~~~~~--------~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 6 LTLENFGPYRGR--------QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred EEEeceEEEcCC--------ceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 778888765543 26778887776 88999999999999999985443
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.63 E-value=6.4e-05 Score=67.36 Aligned_cols=28 Identities=39% Similarity=0.610 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+++..+.|+|++||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999884
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.63 E-value=4.5e-05 Score=61.94 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-+++|+|+||||||||++.|.+++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHh
Confidence 4899999999999999999999986
No 490
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.63 E-value=2.2e-05 Score=65.93 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=31.2
Q ss_pred ccccceeEecCCc-EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 96 ~l~~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
++..++..++++. ++.|+|++|+|||||++.++..+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4557777777765 899999999999999999998875
No 491
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.62 E-value=5.1e-05 Score=72.19 Aligned_cols=25 Identities=40% Similarity=0.765 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-++||.|+||||||||++.|+++++
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC
Confidence 5899999999999999999999973
No 492
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.62 E-value=8.1e-05 Score=68.32 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-++||+|++|||||||++.|.+++.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999996
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.60 E-value=5.7e-05 Score=64.52 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.3
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|.=+.+.+|+.++|+|++|+|||||++.|++...
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5567899999999999999999999999999885
No 494
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.59 E-value=7.3e-05 Score=77.38 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=32.5
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i 141 (189)
+..|++..| +++|+|+||+||||++++|++++. +..|.+
T Consensus 20 ~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~---~~~~~~ 58 (1486)
T PRK04863 20 ARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI---PDLTLL 58 (1486)
T ss_pred ceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc---CCCCeE
Confidence 557888776 999999999999999999999996 544443
No 495
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.58 E-value=7.6e-05 Score=68.66 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=32.7
Q ss_pred cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
|.-|++.+|+.++|+|+||+|||||+++|+++..
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 8899999999999999999999999999999886
No 496
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.58 E-value=7.9e-05 Score=73.75 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=23.6
Q ss_pred ceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
+.+.+.+| +++|+||||||||||+.+|.=++
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~~~l 47 (1179)
T TIGR02168 17 TTINFDKG-ITGIVGPNGCGKSNIVDAIRWVL 47 (1179)
T ss_pred eeEEecCC-cEEEECCCCCChhHHHHHHHHHH
Confidence 34555544 89999999999999997755444
No 497
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.57 E-value=3.6e-05 Score=67.92 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.2
Q ss_pred cceeEecC--CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 99 ALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 99 ~vsl~i~~--Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
+|+..+++ ++.++|+|.+|+|||||++.|++.++
T Consensus 152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57788888 99999999999999999999999875
No 498
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.57 E-value=4.8e-05 Score=57.15 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHhHHHHHHHHhh
Q 029679 110 VGLAGPPGAGKSTLAAEVVRRI 131 (189)
Q Consensus 110 ~~ivG~sGsGKSTL~r~l~Gl~ 131 (189)
++|+|++|||||||++.|.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999999973
No 499
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00012 Score=61.63 Aligned_cols=26 Identities=38% Similarity=0.708 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
.-++||.|+|||||||+++.|.-.++
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999996
No 500
>PRK05439 pantothenate kinase; Provisional
Probab=97.54 E-value=9.7e-05 Score=65.15 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (189)
Q Consensus 108 e~~~ivG~sGsGKSTL~r~l~Gl~~ 132 (189)
-++||.|++||||||+++.|..++.
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999885
Done!