Query 029680
Match_columns 189
No_of_seqs 124 out of 1171
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 16:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 6.6E-35 1.4E-39 212.7 17.8 137 31-167 1-137 (138)
2 KOG1718 Dual specificity phosp 100.0 4.4E-35 9.5E-40 213.2 14.9 158 26-183 12-169 (198)
3 cd00127 DSPc Dual specificity 100.0 1.5E-32 3.3E-37 200.0 17.2 137 30-166 1-139 (139)
4 PF00782 DSPc: Dual specificit 100.0 1.2E-31 2.6E-36 194.2 13.4 130 38-168 1-133 (133)
5 KOG1717 Dual specificity phosp 100.0 1.6E-30 3.5E-35 201.8 12.7 143 29-171 170-314 (343)
6 KOG1716 Dual specificity phosp 100.0 3E-29 6.5E-34 203.3 17.3 150 27-176 71-223 (285)
7 PRK12361 hypothetical protein; 100.0 2.3E-27 5E-32 207.7 20.1 141 27-168 91-236 (547)
8 PTZ00242 protein tyrosine phos 99.9 1.5E-24 3.3E-29 162.6 16.3 145 27-173 7-162 (166)
9 PTZ00393 protein tyrosine phos 99.9 1.7E-24 3.6E-29 168.3 15.8 152 21-175 74-235 (241)
10 KOG1719 Dual specificity phosp 99.9 1.5E-23 3.2E-28 151.0 12.8 141 33-173 27-174 (183)
11 KOG1720 Protein tyrosine phosp 99.9 1.9E-20 4.1E-25 141.4 14.6 120 50-171 88-211 (225)
12 COG2453 CDC14 Predicted protei 99.8 2.5E-17 5.4E-22 125.2 13.2 97 72-169 70-167 (180)
13 PF03162 Y_phosphatase2: Tyros 99.7 2.9E-17 6.4E-22 122.8 8.0 137 31-171 7-152 (164)
14 PF05706 CDKN3: Cyclin-depende 99.7 1.7E-16 3.6E-21 117.2 6.5 105 37-142 42-168 (168)
15 TIGR01244 conserved hypothetic 99.7 4.9E-15 1.1E-19 107.6 13.6 116 31-153 2-129 (135)
16 KOG2836 Protein tyrosine phosp 99.6 3.5E-14 7.7E-19 100.4 12.6 139 28-169 6-156 (173)
17 PF04273 DUF442: Putative phos 99.5 1.7E-13 3.7E-18 95.8 8.5 91 32-128 3-105 (110)
18 smart00012 PTPc_DSPc Protein t 99.4 3.2E-12 6.9E-17 87.8 10.7 89 76-164 4-101 (105)
19 smart00404 PTPc_motif Protein 99.4 3.2E-12 6.9E-17 87.8 10.7 89 76-164 4-101 (105)
20 PLN02727 NAD kinase 99.4 3.3E-12 7.2E-17 114.9 10.9 100 35-137 260-370 (986)
21 KOG2283 Clathrin coat dissocia 99.2 1.9E-11 4.1E-16 103.7 7.5 140 28-168 25-173 (434)
22 COG3453 Uncharacterized protei 99.2 2.6E-10 5.7E-15 79.3 11.4 111 32-149 4-126 (130)
23 cd00047 PTPc Protein tyrosine 99.2 9.2E-11 2E-15 92.3 9.4 107 57-164 113-227 (231)
24 PF13350 Y_phosphatase3: Tyros 99.2 1E-10 2.2E-15 87.6 8.7 108 33-144 15-159 (164)
25 smart00194 PTPc Protein tyrosi 99.2 2.5E-10 5.5E-15 91.3 10.0 81 84-164 168-254 (258)
26 COG5350 Predicted protein tyro 99.1 1.8E-09 3.8E-14 78.3 10.6 113 49-162 25-148 (172)
27 KOG1572 Predicted protein tyro 99.0 4.8E-09 1E-13 81.3 12.1 115 32-149 61-188 (249)
28 PRK15375 pathogenicity island 99.0 3.9E-09 8.4E-14 90.2 11.3 88 82-169 431-529 (535)
29 PHA02747 protein tyrosine phos 98.8 2.1E-08 4.6E-13 82.5 9.7 54 109-162 230-288 (312)
30 PHA02742 protein tyrosine phos 98.8 3.4E-08 7.3E-13 81.0 10.8 61 109-169 230-299 (303)
31 PHA02740 protein tyrosine phos 98.8 4.6E-08 1E-12 79.9 11.0 56 108-163 221-281 (298)
32 PHA02746 protein tyrosine phos 98.8 7E-08 1.5E-12 79.8 11.1 56 109-164 248-308 (323)
33 PF00102 Y_phosphatase: Protei 98.8 4.6E-08 1E-12 76.5 9.5 71 94-164 155-231 (235)
34 PF04179 Init_tRNA_PT: Initiat 98.8 1.6E-07 3.4E-12 80.4 12.9 132 34-165 292-449 (451)
35 PHA02738 hypothetical protein; 98.7 1.3E-07 2.9E-12 78.1 10.1 56 108-163 227-287 (320)
36 KOG2386 mRNA capping enzyme, g 98.7 3.3E-08 7.1E-13 82.5 6.3 122 49-170 54-186 (393)
37 COG2365 Protein tyrosine/serin 98.6 1.8E-07 3.9E-12 74.6 7.9 119 38-156 55-184 (249)
38 PF14566 PTPlike_phytase: Inos 98.6 1.2E-07 2.6E-12 69.9 6.4 59 72-132 90-148 (149)
39 KOG0792 Protein tyrosine phosp 98.6 2.2E-07 4.9E-12 84.7 8.4 81 83-163 1037-1123(1144)
40 KOG0790 Protein tyrosine phosp 98.3 1.6E-06 3.5E-11 72.9 5.8 114 48-161 372-512 (600)
41 COG5599 PTP2 Protein tyrosine 98.0 9.1E-06 2E-10 64.3 5.3 77 94-170 201-294 (302)
42 KOG0789 Protein tyrosine phosp 97.8 8.9E-05 1.9E-09 63.0 8.6 56 107-162 298-359 (415)
43 KOG0791 Protein tyrosine phosp 97.8 0.00013 2.7E-09 60.3 8.8 99 76-174 254-359 (374)
44 KOG0793 Protein tyrosine phosp 97.5 0.00033 7.2E-09 62.2 7.6 92 77-168 895-994 (1004)
45 KOG4228 Protein tyrosine phosp 97.4 0.00029 6.4E-09 65.3 6.2 64 97-160 715-787 (1087)
46 KOG4228 Protein tyrosine phosp 97.2 0.00064 1.4E-08 63.2 6.0 57 108-164 1018-1079(1087)
47 PF14671 DSPn: Dual specificit 97.2 0.0012 2.6E-08 48.0 6.2 67 83-150 39-112 (141)
48 cd01518 RHOD_YceA Member of th 95.8 0.035 7.6E-07 37.6 5.7 29 106-137 59-87 (101)
49 KOG4471 Phosphatidylinositol 3 95.8 0.024 5.2E-07 49.9 5.9 36 94-129 360-395 (717)
50 PLN02160 thiosulfate sulfurtra 94.3 0.066 1.4E-06 38.7 3.9 78 54-137 27-107 (136)
51 COG0607 PspE Rhodanese-related 94.2 0.12 2.5E-06 35.1 4.9 73 51-137 14-87 (110)
52 PRK01415 hypothetical protein; 93.5 0.12 2.5E-06 41.3 4.2 29 106-137 169-197 (247)
53 PF06602 Myotub-related: Myotu 93.5 0.23 5E-06 41.7 6.2 24 106-129 229-252 (353)
54 cd01520 RHOD_YbbB Member of th 93.3 0.26 5.7E-06 34.9 5.4 31 105-137 83-113 (128)
55 cd01522 RHOD_1 Member of the R 92.3 0.56 1.2E-05 32.7 5.9 75 57-137 15-90 (117)
56 KOG1089 Myotubularin-related p 92.2 0.32 7E-06 43.0 5.4 31 99-129 334-365 (573)
57 PRK00142 putative rhodanese-re 92.1 0.29 6.3E-06 40.5 4.9 28 107-137 170-197 (314)
58 cd01448 TST_Repeat_1 Thiosulfa 91.3 0.45 9.7E-06 33.1 4.5 30 106-137 77-106 (122)
59 cd01523 RHOD_Lact_B Member of 91.1 0.59 1.3E-05 31.3 4.9 29 106-137 59-87 (100)
60 PRK05320 rhodanese superfamily 91.0 0.49 1.1E-05 38.0 5.0 28 107-137 174-201 (257)
61 TIGR03865 PQQ_CXXCW PQQ-depend 90.2 3.1 6.6E-05 30.9 8.4 30 106-137 114-143 (162)
62 cd01533 4RHOD_Repeat_2 Member 90.0 1.1 2.5E-05 30.4 5.6 28 107-137 65-92 (109)
63 PF00581 Rhodanese: Rhodanese- 88.5 0.65 1.4E-05 31.3 3.5 81 54-137 10-98 (113)
64 cd01443 Cdc25_Acr2p Cdc25 enzy 87.8 2.5 5.3E-05 29.0 6.1 19 108-126 66-84 (113)
65 cd01519 RHOD_HSP67B2 Member of 86.6 1 2.2E-05 30.3 3.5 28 107-137 65-92 (106)
66 COG1054 Predicted sulfurtransf 86.5 3.1 6.7E-05 34.1 6.6 91 34-136 105-197 (308)
67 cd01527 RHOD_YgaP Member of th 85.6 0.66 1.4E-05 30.9 2.2 18 106-124 52-69 (99)
68 cd01531 Acr2p Eukaryotic arsen 85.4 2.8 6.1E-05 28.7 5.3 22 107-128 61-82 (113)
69 TIGR03167 tRNA_sel_U_synt tRNA 85.4 2.3 4.9E-05 35.2 5.5 28 107-136 73-100 (311)
70 smart00450 RHOD Rhodanese Homo 85.3 2.5 5.3E-05 27.4 4.9 29 106-137 54-82 (100)
71 cd01528 RHOD_2 Member of the R 84.5 1.5 3.3E-05 29.3 3.5 28 107-137 57-84 (101)
72 PRK10287 thiosulfate:cyanide s 84.2 1.2 2.5E-05 30.6 2.9 28 107-137 59-86 (104)
73 PRK11784 tRNA 2-selenouridine 82.4 3 6.6E-05 35.0 5.2 28 107-136 87-114 (345)
74 KOG1530 Rhodanese-related sulf 81.5 1.9 4.1E-05 31.0 3.1 74 49-124 30-104 (136)
75 cd01526 RHOD_ThiF Member of th 79.5 1.9 4.2E-05 30.0 2.7 28 106-136 70-97 (122)
76 PRK00162 glpE thiosulfate sulf 78.9 4.9 0.00011 27.2 4.5 29 106-137 56-84 (108)
77 cd01530 Cdc25 Cdc25 phosphatas 78.9 4.1 8.8E-05 28.5 4.2 25 106-132 66-91 (121)
78 PF03861 ANTAR: ANTAR domain; 78.0 3 6.6E-05 25.0 2.9 25 124-148 16-40 (56)
79 PRK07411 hypothetical protein; 77.9 3.1 6.7E-05 35.5 3.9 66 59-137 301-368 (390)
80 cd01532 4RHOD_Repeat_1 Member 72.4 7.3 0.00016 25.6 3.9 29 108-137 50-78 (92)
81 cd01534 4RHOD_Repeat_3 Member 70.5 7.4 0.00016 25.6 3.6 28 107-137 55-82 (95)
82 cd01521 RHOD_PspE2 Member of t 69.9 10 0.00022 25.7 4.3 31 105-137 61-92 (110)
83 PRK10886 DnaA initiator-associ 69.8 16 0.00035 28.0 5.8 37 92-131 25-61 (196)
84 PRK05569 flavodoxin; Provision 69.7 30 0.00064 24.5 6.9 112 52-170 26-140 (141)
85 PF03668 ATP_bind_2: P-loop AT 69.1 7.2 0.00016 31.8 3.8 35 92-126 219-260 (284)
86 COG2927 HolC DNA polymerase II 69.1 6.1 0.00013 28.9 3.1 24 95-118 16-39 (144)
87 cd01449 TST_Repeat_2 Thiosulfa 67.9 11 0.00025 25.6 4.2 28 107-137 77-104 (118)
88 PRK05728 DNA polymerase III su 67.1 10 0.00022 27.5 4.0 26 93-118 14-39 (142)
89 smart00400 ZnF_CHCC zinc finge 65.0 7.9 0.00017 23.0 2.6 32 112-145 23-54 (55)
90 cd01444 GlpE_ST GlpE sulfurtra 64.9 16 0.00035 23.7 4.4 30 105-137 53-82 (96)
91 TIGR03642 cas_csx13 CRISPR-ass 64.7 28 0.00062 24.7 5.7 59 77-135 56-116 (124)
92 TIGR00853 pts-lac PTS system, 64.3 6.6 0.00014 26.4 2.3 61 109-171 4-73 (95)
93 PRK05416 glmZ(sRNA)-inactivati 63.8 17 0.00037 29.7 5.1 36 92-127 222-264 (288)
94 PRK05600 thiamine biosynthesis 63.4 10 0.00022 32.2 3.8 68 58-136 287-357 (370)
95 PF04364 DNA_pol3_chi: DNA pol 62.9 11 0.00025 27.0 3.5 25 94-118 15-39 (137)
96 PF13344 Hydrolase_6: Haloacid 62.8 44 0.00095 22.5 7.0 68 94-163 16-96 (101)
97 cd05567 PTS_IIB_mannitol PTS_I 62.2 9.3 0.0002 25.0 2.8 18 109-126 1-18 (87)
98 cd01525 RHOD_Kc Member of the 61.7 14 0.0003 24.6 3.6 27 108-137 65-91 (105)
99 cd00158 RHOD Rhodanese Homolog 61.6 9.4 0.0002 24.1 2.7 24 106-131 48-71 (89)
100 cd01447 Polysulfide_ST Polysul 61.0 12 0.00026 24.7 3.2 29 106-137 59-87 (103)
101 cd01529 4RHOD_Repeats Member o 61.0 14 0.0003 24.3 3.5 29 106-137 54-82 (96)
102 TIGR02981 phageshock_pspE phag 60.8 27 0.00059 23.6 4.9 28 107-137 57-84 (101)
103 PRK05772 translation initiatio 59.8 19 0.0004 30.6 4.7 16 103-118 162-177 (363)
104 PRK06646 DNA polymerase III su 59.8 16 0.00035 27.0 3.9 26 93-118 14-39 (154)
105 PF02673 BacA: Bacitracin resi 59.4 11 0.00025 30.2 3.3 27 116-144 159-185 (259)
106 PRK13938 phosphoheptose isomer 59.4 35 0.00075 26.2 5.8 42 89-133 26-67 (196)
107 TIGR01550 DOC_P1 death-on-curi 59.0 27 0.00059 24.5 4.8 35 116-150 68-106 (121)
108 TIGR00512 salvage_mtnA S-methy 57.9 24 0.00051 29.6 5.0 14 105-118 140-157 (331)
109 PRK01269 tRNA s(4)U8 sulfurtra 56.5 19 0.00042 31.6 4.5 28 106-136 447-474 (482)
110 COG1660 Predicted P-loop-conta 56.1 26 0.00057 28.4 4.7 34 93-126 221-261 (286)
111 PF10302 DUF2407: DUF2407 ubiq 56.1 6 0.00013 26.9 1.0 10 109-118 86-95 (97)
112 PRK08762 molybdopterin biosynt 55.3 26 0.00057 29.6 5.0 29 106-137 55-83 (376)
113 PRK12554 undecaprenyl pyrophos 55.2 13 0.00028 30.2 3.0 26 117-144 166-191 (276)
114 PF09419 PGP_phosphatase: Mito 54.4 50 0.0011 24.8 5.8 34 30-64 13-49 (168)
115 TIGR00753 undec_PP_bacA undeca 54.2 14 0.0003 29.7 3.0 26 117-144 160-185 (255)
116 PRK06036 translation initiatio 52.8 29 0.00063 29.1 4.7 20 103-122 143-162 (339)
117 PRK00281 undecaprenyl pyrophos 52.6 16 0.00034 29.6 3.0 26 117-144 164-189 (268)
118 PRK05720 mtnA methylthioribose 52.2 35 0.00076 28.7 5.1 15 105-119 144-158 (344)
119 PRK11449 putative deoxyribonuc 52.1 29 0.00063 27.7 4.5 54 94-147 113-172 (258)
120 PF01807 zf-CHC2: CHC2 zinc fi 52.1 17 0.00036 24.5 2.7 36 112-149 54-89 (97)
121 PLN02449 ferrochelatase 50.6 59 0.0013 28.8 6.4 108 3-115 297-423 (485)
122 PRK10499 PTS system N,N'-diace 49.8 38 0.00083 23.2 4.3 61 109-169 4-71 (106)
123 PRK09590 celB cellobiose phosp 49.4 16 0.00035 25.0 2.3 61 109-171 2-73 (104)
124 PF09623 Cas_NE0113: CRISPR-as 48.8 50 0.0011 26.0 5.3 57 80-136 82-139 (224)
125 PF02302 PTS_IIB: PTS system, 48.5 13 0.00029 24.1 1.7 16 110-125 1-16 (90)
126 PRK07878 molybdopterin biosynt 48.5 22 0.00049 30.3 3.5 29 106-137 341-369 (392)
127 PLN02723 3-mercaptopyruvate su 47.8 29 0.00062 28.7 4.0 30 105-137 266-295 (320)
128 COG0794 GutQ Predicted sugar p 47.4 49 0.0011 25.7 4.9 35 94-134 28-62 (202)
129 PRK13352 thiamine biosynthesis 47.0 1.3E+02 0.0027 26.2 7.6 55 94-148 142-218 (431)
130 TIGR00190 thiC thiamine biosyn 45.9 1.4E+02 0.003 25.8 7.7 97 52-148 86-215 (423)
131 TIGR03217 4OH_2_O_val_ald 4-hy 44.1 1.4E+02 0.003 24.9 7.5 79 49-129 120-209 (333)
132 PF01964 ThiC: ThiC family; I 43.6 1.1E+02 0.0025 26.3 6.8 97 52-148 85-214 (420)
133 KOG1004 Exosomal 3'-5' exoribo 43.3 60 0.0013 25.4 4.7 39 108-148 185-223 (230)
134 COG2230 Cfa Cyclopropane fatty 43.0 99 0.0021 25.3 6.3 78 94-171 155-241 (283)
135 PRK09629 bifunctional thiosulf 42.6 45 0.00098 30.3 4.7 28 106-136 221-248 (610)
136 COG2897 SseA Rhodanese-related 42.4 20 0.00044 29.3 2.2 18 105-123 231-248 (285)
137 PRK11493 sseA 3-mercaptopyruva 42.4 19 0.00041 29.1 2.1 29 106-137 229-257 (281)
138 PRK10310 PTS system galactitol 41.1 25 0.00054 23.5 2.2 19 110-128 4-22 (94)
139 COG1968 BacA Undecaprenyl pyro 41.0 32 0.00068 27.9 3.1 25 117-143 165-189 (270)
140 PF12643 MazG-like: MazG-like 40.7 1.1E+02 0.0025 20.6 5.6 51 121-172 41-97 (98)
141 PF03853 YjeF_N: YjeF-related 40.6 50 0.0011 24.5 4.0 43 95-137 10-54 (169)
142 PRK08334 translation initiatio 40.6 56 0.0012 27.6 4.6 12 107-119 160-171 (356)
143 PF01904 DUF72: Protein of unk 39.4 1.8E+02 0.004 22.6 9.4 71 48-118 134-214 (230)
144 COG3414 SgaB Phosphotransferas 39.2 51 0.0011 22.1 3.4 29 109-137 2-32 (93)
145 COG0084 TatD Mg-dependent DNas 38.7 42 0.0009 27.0 3.5 88 94-181 111-207 (256)
146 KOG0235 Phosphoglycerate mutas 38.2 1.9E+02 0.0041 22.7 6.9 48 90-143 134-185 (214)
147 COG3707 AmiR Response regulato 38.2 37 0.0008 26.1 2.9 23 126-148 150-172 (194)
148 PRK08195 4-hyroxy-2-oxovalerat 38.1 1.8E+02 0.0039 24.3 7.3 79 49-129 121-210 (337)
149 smart00488 DEXDc2 DEAD-like he 37.9 96 0.0021 25.2 5.6 36 95-130 14-49 (289)
150 smart00489 DEXDc3 DEAD-like he 37.9 96 0.0021 25.2 5.6 36 95-130 14-49 (289)
151 TIGR01460 HAD-SF-IIA Haloacid 37.7 1.1E+02 0.0024 23.9 5.7 71 94-165 16-99 (236)
152 COG4050 Uncharacterized protei 37.1 57 0.0012 23.1 3.5 75 72-149 57-141 (152)
153 COG1107 Archaea-specific RecJ- 36.9 2.3E+02 0.005 25.9 7.9 79 90-169 325-408 (715)
154 PF14746 WASH-7_C: WASH comple 36.4 1.1E+02 0.0024 23.0 5.2 53 93-149 59-112 (170)
155 PRK13936 phosphoheptose isomer 36.1 1.3E+02 0.0028 22.8 5.8 33 92-127 27-59 (197)
156 cd05564 PTS_IIB_chitobiose_lic 35.6 33 0.00072 22.9 2.1 59 110-170 1-68 (96)
157 TIGR02613 mob_myst_B mobile my 35.4 40 0.00087 25.5 2.8 28 110-137 119-147 (186)
158 TIGR00644 recJ single-stranded 35.0 74 0.0016 28.4 4.8 50 87-136 33-83 (539)
159 cd01524 RHOD_Pyr_redox Member 33.7 53 0.0011 21.1 2.9 19 105-124 48-66 (90)
160 PRK00414 gmhA phosphoheptose i 33.0 1.1E+02 0.0023 23.3 4.8 31 92-125 28-58 (192)
161 COG0276 HemH Protoheme ferro-l 32.5 1.2E+02 0.0026 25.3 5.3 61 5-66 206-266 (320)
162 PRK06371 translation initiatio 32.1 50 0.0011 27.6 3.0 24 96-119 125-148 (329)
163 TIGR01245 trpD anthranilate ph 31.7 1.3E+02 0.0029 25.0 5.5 62 106-170 97-166 (330)
164 PF14532 Sigma54_activ_2: Sigm 31.7 1.4E+02 0.003 20.9 5.0 32 93-124 6-37 (138)
165 PF06415 iPGM_N: BPG-independe 31.3 49 0.0011 26.1 2.7 38 94-131 45-84 (223)
166 COG0182 Predicted translation 30.8 34 0.00075 28.5 1.8 29 106-135 148-181 (346)
167 PRK11070 ssDNA exonuclease Rec 30.7 1.2E+02 0.0027 27.4 5.4 37 84-120 45-81 (575)
168 TIGR02584 cas_NE0113 CRISPR-as 30.6 1.5E+02 0.0034 23.0 5.2 45 93-137 102-146 (209)
169 TIGR00274 N-acetylmuramic acid 30.6 1.8E+02 0.0039 23.8 6.0 46 94-139 43-88 (291)
170 COG1440 CelA Phosphotransferas 30.6 47 0.001 22.8 2.2 64 109-173 2-73 (102)
171 TIGR00197 yjeF_nterm yjeF N-te 30.2 1.2E+02 0.0027 23.2 4.8 40 96-136 33-73 (205)
172 PF13147 Amidohydro_4: Amidohy 29.9 2.5E+02 0.0054 21.5 6.7 53 94-146 222-279 (304)
173 cd05565 PTS_IIB_lactose PTS_II 29.8 43 0.00093 22.7 1.9 60 110-172 2-71 (99)
174 PRK05568 flavodoxin; Provision 29.5 1.8E+02 0.0038 20.3 5.3 113 51-170 25-140 (142)
175 PHA03338 US22 family homolog; 29.5 57 0.0012 26.8 2.8 39 113-151 161-200 (344)
176 cd05566 PTS_IIB_galactitol PTS 29.4 59 0.0013 20.9 2.5 17 110-126 2-18 (89)
177 PF14661 HAUS6_N: HAUS augmin- 29.3 2.9E+02 0.0062 21.9 6.9 64 123-187 38-107 (247)
178 cd03174 DRE_TIM_metallolyase D 29.2 2.8E+02 0.006 21.6 10.6 98 49-149 121-246 (265)
179 PF00762 Ferrochelatase: Ferro 29.1 75 0.0016 26.3 3.6 93 4-103 205-314 (316)
180 PRK02947 hypothetical protein; 29.1 1.3E+02 0.0027 23.9 4.8 38 92-133 24-61 (246)
181 cd04445 DEP_PLEK1 DEP (Disheve 29.1 75 0.0016 21.6 2.9 36 108-148 24-60 (99)
182 PRK11493 sseA 3-mercaptopyruva 28.9 1.2E+02 0.0026 24.4 4.7 39 97-137 75-114 (281)
183 PF12921 ATP13: Mitochondrial 28.5 1.4E+02 0.0031 21.0 4.5 33 139-172 72-104 (126)
184 PRK10425 DNase TatD; Provision 28.3 1.1E+02 0.0024 24.4 4.4 54 94-147 107-167 (258)
185 smart00226 LMWPc Low molecular 28.2 36 0.00077 24.1 1.4 14 111-124 1-14 (140)
186 cd00133 PTS_IIB PTS_IIB: subun 28.2 49 0.0011 20.4 1.9 17 110-126 1-17 (84)
187 cd00687 Terpene_cyclase_nonpla 28.0 1.1E+02 0.0023 24.7 4.3 24 126-149 231-254 (303)
188 PRK14116 gpmA phosphoglyceromu 27.7 2.1E+02 0.0045 22.2 5.8 49 88-142 150-202 (228)
189 PF12668 DUF3791: Protein of u 27.6 1.2E+02 0.0026 18.4 3.5 25 125-149 6-30 (62)
190 TIGR03162 ribazole_cobC alpha- 27.5 1.6E+02 0.0034 21.4 4.9 49 89-143 116-166 (177)
191 PF10727 Rossmann-like: Rossma 27.4 43 0.00093 23.8 1.7 30 93-122 80-110 (127)
192 PRK12570 N-acetylmuramic acid- 27.1 1.2E+02 0.0027 24.8 4.5 46 92-137 42-87 (296)
193 TIGR03848 MSMEG_4193 probable 27.1 1.9E+02 0.004 21.8 5.3 48 89-142 118-172 (204)
194 COG0279 GmhA Phosphoheptose is 27.1 1.4E+02 0.003 22.6 4.3 31 91-124 24-54 (176)
195 cd01720 Sm_D2 The eukaryotic S 27.1 78 0.0017 20.9 2.8 27 98-124 4-30 (87)
196 cd07944 DRE_TIM_HOA_like 4-hyd 26.9 3.3E+02 0.0072 21.8 11.1 98 49-148 115-238 (266)
197 KOG2017 Molybdopterin synthase 26.7 97 0.0021 26.4 3.8 45 107-169 376-420 (427)
198 COG1751 Uncharacterized conser 26.1 2.8E+02 0.0061 20.7 6.0 83 50-144 21-115 (186)
199 PF01026 TatD_DNase: TatD rela 26.1 1.1E+02 0.0024 24.1 4.0 33 94-126 110-142 (255)
200 PRK11391 etp phosphotyrosine-p 26.1 70 0.0015 23.0 2.6 18 109-126 3-20 (144)
201 cd05007 SIS_Etherase N-acetylm 25.9 1E+02 0.0022 24.6 3.8 42 93-137 34-78 (257)
202 COG3654 Doc Prophage maintenan 25.9 2.4E+02 0.0051 20.4 5.1 68 94-167 54-127 (132)
203 cd01535 4RHOD_Repeat_4 Member 25.8 2E+02 0.0043 20.6 5.0 25 107-133 48-72 (145)
204 PF13580 SIS_2: SIS domain; PD 25.7 1.6E+02 0.0034 20.8 4.4 33 92-127 19-51 (138)
205 PRK14118 gpmA phosphoglyceromu 25.6 2.1E+02 0.0046 22.2 5.4 48 89-142 150-201 (227)
206 PRK05986 cob(I)alamin adenolsy 24.8 2.4E+02 0.0053 21.6 5.5 30 106-135 20-50 (191)
207 cd05563 PTS_IIB_ascorbate PTS_ 24.6 79 0.0017 20.2 2.5 17 110-126 1-17 (86)
208 PF02571 CbiJ: Precorrin-6x re 24.5 67 0.0014 25.6 2.4 75 37-113 46-135 (249)
209 PF12682 Flavodoxin_4: Flavodo 24.4 1E+02 0.0022 22.6 3.3 43 72-120 73-115 (156)
210 TIGR00524 eIF-2B_rel eIF-2B al 24.3 85 0.0018 25.9 3.1 17 103-119 114-130 (303)
211 PF00931 NB-ARC: NB-ARC domain 24.0 1.2E+02 0.0026 23.9 3.9 37 93-129 4-40 (287)
212 COG0394 Wzb Protein-tyrosine-p 23.9 53 0.0011 23.7 1.6 17 109-125 3-19 (139)
213 PRK09629 bifunctional thiosulf 23.8 1.5E+02 0.0032 27.1 4.8 29 106-136 79-107 (610)
214 PRK10812 putative DNAse; Provi 23.7 1.4E+02 0.0031 23.8 4.3 28 94-121 110-137 (265)
215 COG1228 HutI Imidazolonepropio 23.4 3.1E+02 0.0066 23.6 6.4 48 98-146 296-346 (406)
216 KOG0330 ATP-dependent RNA heli 23.3 5E+02 0.011 22.7 7.4 87 38-137 238-326 (476)
217 PRK06934 flavodoxin; Provision 23.3 1.8E+02 0.0039 22.8 4.6 40 74-119 131-170 (221)
218 PTZ00123 phosphoglycerate muta 23.1 2.5E+02 0.0054 21.9 5.5 50 88-143 137-190 (236)
219 COG5495 Uncharacterized conser 23.0 83 0.0018 25.2 2.6 25 98-122 81-105 (289)
220 PRK13530 arsenate reductase; P 23.0 1.2E+02 0.0026 21.5 3.3 23 109-132 4-26 (133)
221 PF00270 DEAD: DEAD/DEAH box h 22.9 2.4E+02 0.0052 19.8 5.1 25 107-131 13-37 (169)
222 PRK14119 gpmA phosphoglyceromu 22.9 2.3E+02 0.005 21.9 5.2 49 88-142 150-202 (228)
223 PLN03049 pyridoxine (pyridoxam 22.8 2E+02 0.0043 25.3 5.2 28 108-136 59-87 (462)
224 cd00308 enolase_like Enolase-s 22.8 2.4E+02 0.0052 21.7 5.3 29 94-122 182-210 (229)
225 PRK10126 tyrosine phosphatase; 22.7 80 0.0017 22.7 2.4 18 109-126 3-20 (147)
226 PRK13462 acid phosphatase; Pro 22.7 2.9E+02 0.0064 20.9 5.7 47 88-140 117-165 (203)
227 TIGR02094 more_P_ylases alpha- 22.7 1E+02 0.0022 28.0 3.5 37 108-147 160-199 (601)
228 PF12554 MOZART1: Mitotic-spin 22.5 1.8E+02 0.0038 17.0 4.5 31 118-149 18-48 (48)
229 PF05186 Dpy-30: Dpy-30 motif; 22.5 88 0.0019 17.6 2.0 37 127-164 3-39 (42)
230 PF04343 DUF488: Protein of un 22.4 2.7E+02 0.0058 19.2 6.8 33 50-82 7-52 (122)
231 PRK01295 phosphoglyceromutase; 22.3 2.7E+02 0.0059 21.2 5.4 49 89-143 127-179 (206)
232 PLN03050 pyridoxine (pyridoxam 22.2 2.7E+02 0.0059 22.1 5.5 29 108-137 60-89 (246)
233 cd04765 HTH_MlrA-like_sg2 Heli 22.2 2.5E+02 0.0055 18.7 5.6 41 131-171 54-94 (99)
234 PF07287 DUF1446: Protein of u 22.0 1.1E+02 0.0025 25.9 3.5 38 98-140 150-189 (362)
235 PF03102 NeuB: NeuB family; I 21.6 1.3E+02 0.0027 24.0 3.4 25 94-119 128-152 (241)
236 COG2179 Predicted hydrolase of 21.6 3.6E+02 0.0079 20.4 6.8 60 47-124 18-78 (175)
237 cd07943 DRE_TIM_HOA 4-hydroxy- 21.3 4.2E+02 0.0091 21.0 11.2 79 49-130 118-207 (263)
238 PTZ00323 NAD+ synthase; Provis 21.0 3.6E+02 0.0077 22.1 6.1 45 88-132 24-70 (294)
239 PRK08335 translation initiatio 20.9 3E+02 0.0066 22.4 5.6 17 102-118 104-120 (275)
240 TIGR00640 acid_CoA_mut_C methy 20.8 97 0.0021 22.1 2.5 29 37-65 86-114 (132)
241 PF10096 DUF2334: Uncharacteri 20.7 4E+02 0.0088 21.0 6.2 27 94-120 54-80 (243)
242 COG3564 Uncharacterized protei 20.7 1.6E+02 0.0035 20.0 3.3 25 95-119 11-35 (116)
243 PF06134 RhaA: L-rhamnose isom 20.5 3.5E+02 0.0076 23.3 5.9 60 112-172 324-416 (417)
244 PRK15004 alpha-ribazole phosph 20.5 2.9E+02 0.0063 20.6 5.3 49 89-143 120-170 (199)
245 cd00079 HELICc Helicase superf 20.3 2.4E+02 0.0051 18.7 4.4 25 93-117 13-37 (131)
246 PF13378 MR_MLE_C: Enolase C-t 20.3 2.8E+02 0.006 18.5 4.6 25 94-119 32-56 (111)
247 PLN02723 3-mercaptopyruvate su 20.2 2.2E+02 0.0048 23.4 4.8 40 96-137 90-130 (320)
248 PLN02444 HMP-P synthase 20.2 5.5E+02 0.012 23.4 7.3 97 52-148 246-373 (642)
249 PRK10565 putative carbohydrate 20.1 2.6E+02 0.0057 24.8 5.5 39 98-137 50-89 (508)
250 TIGR00010 hydrolase, TatD fami 20.1 2.1E+02 0.0045 21.9 4.5 25 95-119 108-132 (252)
251 TIGR03573 WbuX N-acetyl sugar 20.1 2.1E+02 0.0046 23.8 4.7 40 115-156 283-322 (343)
252 PF00733 Asn_synthase: Asparag 20.0 1.3E+02 0.0028 23.0 3.3 29 98-126 7-35 (255)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=6.6e-35 Score=212.68 Aligned_cols=137 Identities=45% Similarity=0.711 Sum_probs=129.8
Q ss_pred CeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCc
Q 029680 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGG 110 (189)
Q Consensus 31 ~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~ 110 (189)
|++|.|+||+|+.+++.+.+.+++.||++|||++.+.+.....+++|+++|+.|.+..++.+.+..+++||+....+|++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGK 80 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCe
Confidence 68999999999999999999999999999999998876656788999999999977777778899999999999999999
Q ss_pred EEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 029680 111 VLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEK 167 (189)
Q Consensus 111 VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~ 167 (189)
|||||.+|.||||+++++|||...|+++++|+++++++||.+.||++|+.+|.+|++
T Consensus 81 VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 81 VLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred EEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999986
No 2
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=4.4e-35 Score=213.24 Aligned_cols=158 Identities=34% Similarity=0.427 Sum_probs=148.7
Q ss_pred cCCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHH
Q 029680 26 REDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (189)
Q Consensus 26 ~~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~ 105 (189)
.+-...++|++.||+++-..+.+...+++.+|++|||.+.+.+.....+++|..+|+.|.+...+.++|+.+.+.|+...
T Consensus 12 ~~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~ 91 (198)
T KOG1718|consen 12 PSIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVI 91 (198)
T ss_pred CCccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHH
Confidence 34456789999999998778889999999999999999999888778999999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcccccccccCcC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEIQHIGFTLTGLV 183 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~ 183 (189)
.+||++||||.+|++||+++|+||||++.++++.||+.+++++||-++||.+|++||..||.+|++..++.+.++..-
T Consensus 92 ~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p~~ 169 (198)
T KOG1718|consen 92 MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTPVG 169 (198)
T ss_pred hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776643
No 3
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=100.00 E-value=1.5e-32 Score=199.99 Aligned_cols=137 Identities=50% Similarity=0.778 Sum_probs=128.7
Q ss_pred CCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCC--CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhc
Q 029680 30 VPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ 107 (189)
Q Consensus 30 ~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~--~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~ 107 (189)
++++|.|+||+|+.+++.+.+.|++.||++|||++.+.+. ....+++|+++|+.|.+.++....+..++++|+...++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999987764 34788999999999998777877899999999999999
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELE 166 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~ 166 (189)
+++|||||.+|.|||++++++|+|...++++++|+++|++.||.+.|++.|+++|.+||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.98 E-value=1.2e-31 Score=194.16 Aligned_cols=130 Identities=43% Similarity=0.649 Sum_probs=122.6
Q ss_pred eEeCCccccCCHHHHHhCCCceEEEeCCCCCC---CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Q 029680 38 LFLGSIGAASNKDALKSRNITHILTVANALAP---AHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVH 114 (189)
Q Consensus 38 Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~---~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVH 114 (189)
||+|+.+.+. ...+++.||++|||++.+.+. ....++.++++|+.|....++...+..++++|+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 999999999999999988765 247889999999999778888888999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 029680 115 CFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKS 168 (189)
Q Consensus 115 C~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~ 168 (189)
|.+|.||||++++||||...|+++++|+++++++||.+.|++.|.++|.+|+++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999974
No 5
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=1.6e-30 Score=201.85 Aligned_cols=143 Identities=43% Similarity=0.692 Sum_probs=136.2
Q ss_pred CCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCC--CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHh
Q 029680 29 RVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH--PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR 106 (189)
Q Consensus 29 ~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~--~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~ 106 (189)
.+|.+|+|+||+|+..++++.+.|+.+||++|||+++..+..| ...+.|..+|+.|.-..++..+|.+++.||++++.
T Consensus 170 ~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArs 249 (343)
T KOG1717|consen 170 SFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARS 249 (343)
T ss_pred CcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhc
Confidence 6788999999999999999999999999999999998887766 56789999999999999999999999999999999
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQE 171 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (189)
++.-|||||-+|++||.++++||||...++++.+|+++|+.++.++.||-+|+.||..||+.+.-
T Consensus 250 k~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 250 KNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred cCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999853
No 6
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3e-29 Score=203.26 Aligned_cols=150 Identities=46% Similarity=0.632 Sum_probs=139.6
Q ss_pred CCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC--C-CCCeEEEEEEeccCCCCchHHHHHHHHHHHHH
Q 029680 27 EDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA--H-PNDFVYKVIGVADKEDTNLSQYFDECISFIDE 103 (189)
Q Consensus 27 ~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~--~-~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~ 103 (189)
......+|.|+||+|+...+.+...++..||++|+|+..+.+.. . ..++.|+++|+.|.+..++..+|+.+++||+.
T Consensus 71 ~~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 71 TGNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred ccCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999887664 2 44899999999999999999999999999999
Q ss_pred HHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhccccc
Q 029680 104 AKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEIQHIG 176 (189)
Q Consensus 104 ~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~~~~ 176 (189)
+..++++|||||.+|++||+++++||||+..|+++++|+++|+++||.+.||.+|+.||.+|++.+.......
T Consensus 151 a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 151 AREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred HHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997764444
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=2.3e-27 Score=207.75 Aligned_cols=141 Identities=28% Similarity=0.416 Sum_probs=127.8
Q ss_pred CCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCC----CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHH
Q 029680 27 EDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAP----AHPNDFVYKVIGVADKEDTNLSQYFDECISFID 102 (189)
Q Consensus 27 ~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~----~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~ 102 (189)
..+.+++|.|+||+|+.+.+.+.+.|++.||++|||++.+.+. ....+++|+++|+.|...+... .++++++||+
T Consensus 91 ~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~-~l~~a~~~i~ 169 (547)
T PRK12361 91 SVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLA-QLNQAINWIH 169 (547)
T ss_pred CCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHH-HHHHHHHHHH
Confidence 3477899999999999999999999999999999999976543 2356789999999998777654 5999999999
Q ss_pred HHHhcCCcEEEEcCCCCChHHHHHHHHHHHh-CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 029680 103 EAKRQRGGVLVHCFAGRSRSVTIVVAYLMKK-HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKS 168 (189)
Q Consensus 103 ~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~-~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~ 168 (189)
+.++++++|||||.+|.|||+++++||||.+ .++++++|+++|+++||.+.||+.++++|++|.+.
T Consensus 170 ~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 170 RQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQ 236 (547)
T ss_pred HHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999977 48999999999999999999999999999999866
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=1.5e-24 Score=162.61 Aligned_cols=145 Identities=21% Similarity=0.254 Sum_probs=119.5
Q ss_pred CCCCCeeecCCeEeCCccccC----CHHHHHhCCCceEEEeCCCCCCC---CCCCeEEEEEEeccCCCCchHHHHHHHHH
Q 029680 27 EDRVPFEIEQGLFLGSIGAAS----NKDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECIS 99 (189)
Q Consensus 27 ~~~~~~~I~~~Ly~G~~~~~~----~~~~l~~~gi~~VI~l~~~~~~~---~~~~~~~~~ip~~d~~~~~~~~~l~~~~~ 99 (189)
+....+-+.+.+..-..|... ....|++.||++||+++.+.... ...++.++++|+.|...|.... +..+++
T Consensus 7 ~~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~-i~~~~~ 85 (166)
T PTZ00242 7 KDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAV-IDNWLR 85 (166)
T ss_pred CCcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHH-HHHHHH
Confidence 344556677777777777664 34889999999999998754332 1568999999999877665554 778888
Q ss_pred HHHHHHhc----CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q 029680 100 FIDEAKRQ----RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEIQ 173 (189)
Q Consensus 100 ~i~~~~~~----~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~ 173 (189)
++++.+.. |++|+|||.+|+||||+++++|||...++++.+|+.+++++||+.. ++.++.+|.+|.+.++...
T Consensus 86 ~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~~ 162 (166)
T PTZ00242 86 LLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAAG 162 (166)
T ss_pred HHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccCC
Confidence 88887754 8999999999999999999999999989999999999999999864 7899999999998876544
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=1.7e-24 Score=168.28 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=123.5
Q ss_pred hhhcccCCCCCeeecCC---eEeCCccccC----CHHHHHhCCCceEEEeCCCCCCC---CCCCeEEEEEEeccCCCCch
Q 029680 21 LTTCLREDRVPFEIEQG---LFLGSIGAAS----NKDALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNL 90 (189)
Q Consensus 21 ~~~~~~~~~~~~~I~~~---Ly~G~~~~~~----~~~~l~~~gi~~VI~l~~~~~~~---~~~~~~~~~ip~~d~~~~~~ 90 (189)
+.+.....+.|++|.-+ +.+=..|... .++.|++.||++||++++..... ...+++++++|+.|...|+.
T Consensus 74 ~~~~~~~~~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~ 153 (241)
T PTZ00393 74 MDYLNPVLNHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV 153 (241)
T ss_pred ccccchhcccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH
Confidence 34444445667776554 4455555543 34889999999999998755432 26799999999999887765
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 029680 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (189)
Q Consensus 91 ~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 170 (189)
.. +.+++++++..+..|++|+|||.+|.||||+++++|||. .|+++++|+++||+.||++ ++..++.+|++|+++.+
T Consensus 154 ~~-i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 154 DI-VSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HH-HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 54 888999999998899999999999999999999999998 6999999999999999987 58899999999999987
Q ss_pred hcccc
Q 029680 171 EIQHI 175 (189)
Q Consensus 171 ~~~~~ 175 (189)
.+.++
T Consensus 231 k~~~~ 235 (241)
T PTZ00393 231 KKNCL 235 (241)
T ss_pred ccchh
Confidence 66554
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.91 E-value=1.5e-23 Score=151.04 Aligned_cols=141 Identities=24% Similarity=0.349 Sum_probs=124.0
Q ss_pred eecCCeEeCCccccC-CHHHHHhCCCceEEEeCCCCCCCC------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHH
Q 029680 33 EIEQGLFLGSIGAAS-NKDALKSRNITHILTVANALAPAH------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK 105 (189)
Q Consensus 33 ~I~~~Ly~G~~~~~~-~~~~l~~~gi~~VI~l~~~~~~~~------~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~ 105 (189)
.+.+.+.+|..|..+ +...++..|+..||.++++.+... ..+++++.+|..|....+....+..+++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 788888999888654 667788899999999998776442 6789999999999854444444899999999999
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEIQ 173 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~ 173 (189)
..|+.|+|||++|.+||+++++||||...+|++++|+++++.+||.+...+.+++.|.+|.+.+....
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998875543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.86 E-value=1.9e-20 Score=141.44 Aligned_cols=120 Identities=24% Similarity=0.336 Sum_probs=106.2
Q ss_pred HHHHhCCCceEEEeCCCCCCC---CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHH
Q 029680 50 DALKSRNITHILTVANALAPA---HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 50 ~~l~~~gi~~VI~l~~~~~~~---~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (189)
..++..+++++|.+....++. ...|+.++++|+.|...|+... +.++++.++.+.+ +++|.|||++|.||||+++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 446678899999998766443 4778999999999999888776 8888999999988 8999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-HHhh
Q 029680 127 VAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEK-SLQE 171 (189)
Q Consensus 127 ~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~-~l~~ 171 (189)
+||||+.+|+++.||++.+|..||++-..+++.+.+.++.. .+.+
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~~ 211 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLAG 211 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998877 4433
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.75 E-value=2.5e-17 Score=125.23 Aligned_cols=97 Identities=29% Similarity=0.342 Sum_probs=77.8
Q ss_pred CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCC-CCHHHHHHHHHHhCC
Q 029680 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG-MSLSQAMGHVKSRRP 150 (189)
Q Consensus 72 ~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g-~~~~~A~~~v~~~rp 150 (189)
..++.++++|+.|...++... +.+++++|+++.++|++|+|||.+|+||||++++||||...| +..++++..++..||
T Consensus 70 ~~~~~~~~~~~~D~~~p~~~~-l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDLED-LDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcHHH-HHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 778899999999999998855 999999999999999999999999999999999999999965 557777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 029680 151 QAAPNSGFLLQLQELEKSL 169 (189)
Q Consensus 151 ~~~~~~~~~~~L~~~~~~l 169 (189)
.......+.....+.+...
T Consensus 149 ~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 149 GAVVTEIQHLFELEQELFR 167 (180)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 5333343433333333333
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.71 E-value=2.9e-17 Score=122.80 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=85.7
Q ss_pred CeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC----C--CCCeEEEEEEeccCCC---CchHHHHHHHHHHH
Q 029680 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA----H--PNDFVYKVIGVADKED---TNLSQYFDECISFI 101 (189)
Q Consensus 31 ~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~----~--~~~~~~~~ip~~d~~~---~~~~~~l~~~~~~i 101 (189)
...|.++||.|++|...+..+|+++|+++||+|+.+.+.. + ..+++++++++..... +...+.+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999875433 1 6889999999976543 11233455666655
Q ss_pred HHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 029680 102 DEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQE 171 (189)
Q Consensus 102 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (189)
.+. +..+|||||..|.+|||+|++||- +..||+...+++..+..-. ...+..-..+++.|...+..
T Consensus 87 ld~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~~~~ 152 (164)
T PF03162_consen 87 LDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVELVV 152 (164)
T ss_dssp H-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG-GG--HHHHHHHHT-------
T ss_pred hCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcceec
Confidence 443 357999999999999999999999 6779999999999987653 35566777788888766543
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.66 E-value=1.7e-16 Score=117.17 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=69.7
Q ss_pred CeEeCCcccc----------CCHHHHHhCCCceEEEeCCCCCCC-----------CCCCeEEEEEEeccCCCCchHHHHH
Q 029680 37 GLFLGSIGAA----------SNKDALKSRNITHILTVANALAPA-----------HPNDFVYKVIGVADKEDTNLSQYFD 95 (189)
Q Consensus 37 ~Ly~G~~~~~----------~~~~~l~~~gi~~VI~l~~~~~~~-----------~~~~~~~~~ip~~d~~~~~~~~~l~ 95 (189)
.|.++..|-. .+.+.|++.|++.||.+....+.. -..|+.|+|+||.|...|+... +.
T Consensus 42 ~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~~ 120 (168)
T PF05706_consen 42 FLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-AW 120 (168)
T ss_dssp EEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-HH
T ss_pred eeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-HH
Confidence 4666665542 356789999999999998654322 1678999999999999888765 45
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhC-CCCHHHHH
Q 029680 96 ECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKH-GMSLSQAM 142 (189)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~-g~~~~~A~ 142 (189)
.+.+.+...+++|++|+|||.+|.||||++|+++|+... ++++++|+
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 678889999999999999999999999999999999875 38898885
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.65 E-value=4.9e-15 Score=107.58 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=90.5
Q ss_pred CeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCC------------CCCeEEEEEEeccCCCCchHHHHHHHH
Q 029680 31 PFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH------------PNDFVYKVIGVADKEDTNLSQYFDECI 98 (189)
Q Consensus 31 ~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~------------~~~~~~~~ip~~d~~~~~~~~~l~~~~ 98 (189)
..+|.+.+|++++++..+.+.|.++||++|||++.+.+... ..++.|+++|+..... +. ..+..+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HHHHHHH
Confidence 35899999999999999999999999999999997643221 2589999999875432 22 2255555
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCC
Q 029680 99 SFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAA 153 (189)
Q Consensus 99 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~ 153 (189)
++++ ...++||+||++|. ||+++.+.++.. .|++.+++++..+.....+.
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 5554 34579999999999 999988777665 68999999999988875544
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.60 E-value=3.5e-14 Score=100.44 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=103.5
Q ss_pred CCCCeeecC-C--eEeCCccccC----CHHHHHhCCCceEEEeCCCCCCCC---CCCeEEEEEEeccCCCCchHHHHHHH
Q 029680 28 DRVPFEIEQ-G--LFLGSIGAAS----NKDALKSRNITHILTVANALAPAH---PNDFVYKVIGVADKEDTNLSQYFDEC 97 (189)
Q Consensus 28 ~~~~~~I~~-~--Ly~G~~~~~~----~~~~l~~~gi~~VI~l~~~~~~~~---~~~~~~~~ip~~d~~~~~~~~~l~~~ 97 (189)
+|-|.+|.= + ..+...|.-. -++.|+.+|+++||.+|+...... ..|+..+.+|+.|..+++.. .+++.
T Consensus 6 rPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~q-vv~~w 84 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQ-VVDDW 84 (173)
T ss_pred CCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchH-HHHHH
Confidence 566777632 2 2444444433 258899999999999998765543 77899999999987555432 24444
Q ss_pred HHHHHHHHhc--CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 029680 98 ISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (189)
Q Consensus 98 ~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l 169 (189)
.+++.....+ |..|.|||.+|+||++.+++..|+.. ||..++|++++|++|- -..|..++.+|+.|....
T Consensus 85 ~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr-ga~n~kql~~lekyrpk~ 156 (173)
T KOG2836|consen 85 LSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR-GAINSKQLLYLEKYRPKM 156 (173)
T ss_pred HHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh-ccccHHHHHHHHHhCccc
Confidence 4444443332 67899999999999999999999987 9999999999999995 566788888888887554
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.49 E-value=1.7e-13 Score=95.77 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=58.8
Q ss_pred eeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC------------CCCCeEEEEEEeccCCCCchHHHHHHHHH
Q 029680 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------------HPNDFVYKVIGVADKEDTNLSQYFDECIS 99 (189)
Q Consensus 32 ~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~------------~~~~~~~~~ip~~d~~~~~~~~~l~~~~~ 99 (189)
.+|.+.++++++++..+...+++.||++|||++++.+.. ...|+.|+++|+..... . ...+..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-T-EEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-C-HHHHHHHHH
Confidence 689999999999999999999999999999999775432 16789999999985432 2 233555555
Q ss_pred HHHHHHhcCCcEEEEcCCCCChHHHHHHH
Q 029680 100 FIDEAKRQRGGVLVHCFAGRSRSVTIVVA 128 (189)
Q Consensus 100 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 128 (189)
.++. ..+|||+||+.|. ||+++.+.
T Consensus 81 ~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 5444 4679999999996 99775543
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.42 E-value=3.2e-12 Score=87.81 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=68.8
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHHh---cCCcEEEEcCCCCChHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 029680 76 VYKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRSVTIVVAYLMKKH------GMSLSQAMGHVK 146 (189)
Q Consensus 76 ~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------g~~~~~A~~~v~ 146 (189)
.+++.++.|...|.....+.++++.+++... .+++|+|||.+|.||||+++++|++... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555566555554557777777777765 2679999999999999999999988774 268899999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q 029680 147 SRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 147 ~~rp~~~~~~~~~~~L~~ 164 (189)
+.||+...+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998888877766543
No 19
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.42 E-value=3.2e-12 Score=87.81 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=68.8
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHHh---cCCcEEEEcCCCCChHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 029680 76 VYKVIGVADKEDTNLSQYFDECISFIDEAKR---QRGGVLVHCFAGRSRSVTIVVAYLMKKH------GMSLSQAMGHVK 146 (189)
Q Consensus 76 ~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------g~~~~~A~~~v~ 146 (189)
.+++.++.|...|.....+.++++.+++... .+++|+|||.+|.||||+++++|++... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3445555566555554557777777777765 2679999999999999999999988774 268899999999
Q ss_pred HhCCCCCCCHHHHHHHHH
Q 029680 147 SRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 147 ~~rp~~~~~~~~~~~L~~ 164 (189)
+.||+...+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998888877766543
No 20
>PLN02727 NAD kinase
Probab=99.38 E-value=3.3e-12 Score=114.94 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=81.3
Q ss_pred cCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC--C---------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHH
Q 029680 35 EQGLFLGSIGAASNKDALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDE 103 (189)
Q Consensus 35 ~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~--~---------~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~ 103 (189)
.-.+|++++++..+.+++.++||++|||++++.+.. + ..+++|+++|+.+...+.... +..+.+++++
T Consensus 260 ~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~Eq-Ve~fa~~l~~ 338 (986)
T PLN02727 260 EAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQ-VEKFASLVSD 338 (986)
T ss_pred eeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHh
Confidence 334799999999999999999999999999876522 1 368999999997766665555 7777777744
Q ss_pred HHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 104 AKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 104 ~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..++|||+||+.|.+|+|+++++|+.+.-+-.
T Consensus 339 --slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 --SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred --hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999886654
No 21
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.24 E-value=1.9e-11 Score=103.68 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=105.2
Q ss_pred CCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC-CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHh
Q 029680 28 DRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR 106 (189)
Q Consensus 28 ~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~-~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~ 106 (189)
+++|++..+.+|..+.......-.-+..|--.|.||+++.... ..-.-+...+++.|...|.+.. +..+|+-++.++.
T Consensus 25 msfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~ 103 (434)
T KOG2283|consen 25 MSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLEL-LCPFCKSMDNWLS 103 (434)
T ss_pred EeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHH-HHHHHHCHHHHHh
Confidence 3555555555666655554333333334677799999743221 1222366779999999998888 8889999999998
Q ss_pred c--CCcEEEEcCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHhC---C--CCCCCHHHHHHHHHHHHH
Q 029680 107 Q--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS-LSQAMGHVKSRR---P--QAAPNSGFLLQLQELEKS 168 (189)
Q Consensus 107 ~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~-~~~A~~~v~~~r---p--~~~~~~~~~~~L~~~~~~ 168 (189)
+ ...|.|||++|.+|||++++|||++..... +++|++++-++| . .....+.+.+++..|+..
T Consensus 104 ~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 104 EDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred cCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 6 468889999999999999999999997766 999999999999 3 245677899999999984
No 22
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.23 E-value=2.6e-10 Score=79.26 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=84.4
Q ss_pred eeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCC------------CCCeEEEEEEeccCCCCchHHHHHHHHH
Q 029680 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAH------------PNDFVYKVIGVADKEDTNLSQYFDECIS 99 (189)
Q Consensus 32 ~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~------------~~~~~~~~ip~~d~~~~~~~~~l~~~~~ 99 (189)
.+|.+.++++++++..+...++.+|+++|||.+++.+.+. ..|+.|.++|+...... ...++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT--~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGIT--EADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCC--HHHHHHHHH
Confidence 5789999999999999999999999999999998776552 56789999999754332 223555555
Q ss_pred HHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 100 FIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 100 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
.+++ .+++||.||+.| .||..+=..-. ...||+.++..++=+..-
T Consensus 82 Al~e---aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~G 126 (130)
T COG3453 82 ALDE---AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAAG 126 (130)
T ss_pred HHHH---hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhhC
Confidence 5544 467999999999 59866544333 556899998887766543
No 23
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.21 E-value=9.2e-11 Score=92.30 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=73.1
Q ss_pred CceEEEeCCCCCCCCCCCeEEEEEE-eccCCCCchHHHHHHHHHHHHHHHh--cCCcEEEEcCCCCChHHHHHHHHHHHh
Q 029680 57 ITHILTVANALAPAHPNDFVYKVIG-VADKEDTNLSQYFDECISFIDEAKR--QRGGVLVHCFAGRSRSVTIVVAYLMKK 133 (189)
Q Consensus 57 i~~VI~l~~~~~~~~~~~~~~~~ip-~~d~~~~~~~~~l~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (189)
+...+.+..... .....+.++++. +.|...+.....+..+++.++.... .+++|+|||.+|.||||++|+++++..
T Consensus 113 ~~~~l~i~~~~~-~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~ 191 (231)
T cd00047 113 TVRTLKLSNTGT-GETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQ 191 (231)
T ss_pred EEEEEEEEECCC-CCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 344555544331 123334444433 3454444443446666666666542 367999999999999999999987654
Q ss_pred C-----CCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 134 H-----GMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 134 ~-----g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
. .+++.+++..+|+.||++..++.+...+..
T Consensus 192 ~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 192 RLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHH
Confidence 3 589999999999999999999888877654
No 24
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.20 E-value=1e-10 Score=87.63 Aligned_cols=108 Identities=18% Similarity=0.308 Sum_probs=58.7
Q ss_pred eecCC-eEeCCccccC---CHHHHHhCCCceEEEeCCCCC-----CCCCCCeEEEEEEeccCCCCc---hH---------
Q 029680 33 EIEQG-LFLGSIGAAS---NKDALKSRNITHILTVANALA-----PAHPNDFVYKVIGVADKEDTN---LS--------- 91 (189)
Q Consensus 33 ~I~~~-Ly~G~~~~~~---~~~~l~~~gi~~VI~l~~~~~-----~~~~~~~~~~~ip~~d~~~~~---~~--------- 91 (189)
.|-++ ||.++.++.- +.+.|..+||++||||+.+.+ .....+++++++|+.+..... +.
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 46666 8999988643 567899999999999987543 335779999999998664331 10
Q ss_pred ----------------HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 92 ----------------QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 92 ----------------~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
+.+..+++. .....++||+||++|++|||.+++..|. ..|++.++.++.
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~---l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~D 159 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFEL---LADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHH---HH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHH---hccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHHH
Confidence 112222222 2234469999999999999997766654 459998877654
No 25
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.16 E-value=2.5e-10 Score=91.32 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=61.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCCCHH
Q 029680 84 DKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPNSG 157 (189)
Q Consensus 84 d~~~~~~~~~l~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~-----~g~~~~~A~~~v~~~rp~~~~~~~ 157 (189)
|...|.....+..++..++..... +++|+|||.+|.||||++|+++++.. ...++.+++..+|+.||++..+..
T Consensus 168 d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~ 247 (258)
T smart00194 168 DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEE 247 (258)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHH
Confidence 444443333355555555555442 67999999999999999999987643 358999999999999999999998
Q ss_pred HHHHHHH
Q 029680 158 FLLQLQE 164 (189)
Q Consensus 158 ~~~~L~~ 164 (189)
+...+..
T Consensus 248 Qy~f~~~ 254 (258)
T smart00194 248 QYIFLYR 254 (258)
T ss_pred HHHHHHH
Confidence 8877654
No 26
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.09 E-value=1.8e-09 Score=78.29 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=83.1
Q ss_pred HHHHHhCCCceEEEeCCCCCCCC-CCC---eEEEEEEeccCC------CCchHHHHHHHHHHHHHHHhcCCcEEEEcCCC
Q 029680 49 KDALKSRNITHILTVANALAPAH-PND---FVYKVIGVADKE------DTNLSQYFDECISFIDEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~~-~~~---~~~~~ip~~d~~------~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G 118 (189)
.+...+.|-+++|++.+...... +.. -+++.+-+.|.. ...-..+++.+++|++++.+. .++||||..|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 45556678999999987543222 222 244555555543 223356799999999999865 4999999999
Q ss_pred CChHHHHHHH-HHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 029680 119 RSRSVTIVVA-YLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQL 162 (189)
Q Consensus 119 ~~RS~~v~~a-yL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L 162 (189)
+|||+++++. -|.....++..+..+.++..+|...||+..+...
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~ 148 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIA 148 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHH
Confidence 9999876654 3555668999999999999999999999766543
No 27
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.05 E-value=4.8e-09 Score=81.28 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=88.5
Q ss_pred eeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC------CCCCeEEEEEEeccCC-------CCchHHHHHHHH
Q 029680 32 FEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------HPNDFVYKVIGVADKE-------DTNLSQYFDECI 98 (189)
Q Consensus 32 ~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~------~~~~~~~~~ip~~d~~-------~~~~~~~l~~~~ 98 (189)
+-|.++||.+++|...+..+|+.++.++||.|+++..+. -..++++.++.+.... .+.....+..++
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l 140 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKAL 140 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHH
Confidence 457779999999999999999999999999999886433 2778899999987443 222233355555
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 99 SFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 99 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
.++- ...+.++||||..|..|+|+|+.|.- +..+|+..-.++..+..-
T Consensus 141 ~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 141 KVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 5522 23568999999999999999999887 777999888876665554
No 28
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.01 E-value=3.9e-09 Score=90.23 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=66.8
Q ss_pred eccCCCCchHHHHHHHHHHHHHHHhcC---------CcEEEEcCCCCChHHHHHHHHHHHhCC-CCHHHHHHHHHHhCCC
Q 029680 82 VADKEDTNLSQYFDECISFIDEAKRQR---------GGVLVHCFAGRSRSVTIVVAYLMKKHG-MSLSQAMGHVKSRRPQ 151 (189)
Q Consensus 82 ~~d~~~~~~~~~l~~~~~~i~~~~~~~---------~~VlVHC~~G~~RS~~v~~ayL~~~~g-~~~~~A~~~v~~~rp~ 151 (189)
++|...++....+..+.+.++.....+ ...+|||++|+||||++|+++++...+ .++++.+..+|..|++
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng 510 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNN 510 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCc
Confidence 456544433333666677666653221 234799999999999999999987544 7899999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHH
Q 029680 152 -AAPNSGFLLQLQELEKSL 169 (189)
Q Consensus 152 -~~~~~~~~~~L~~~~~~l 169 (189)
+--++.++..|.+.+.++
T Consensus 511 ~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 511 RMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 888889999999988776
No 29
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.84 E-value=2.1e-08 Score=82.49 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=45.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGHVKSRRPQAAPNSGFLLQL 162 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~-----~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L 162 (189)
+||+|||.+|+||||++|+.-.+. ....++.+++..+|..|+++-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999988876433 235899999999999999988888776666
No 30
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.84 E-value=3.4e-08 Score=80.99 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPNSGFLLQ----LQELEKSL 169 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~~-----~g~~~~~A~~~v~~~rp~~~~~~~~~~~----L~~~~~~l 169 (189)
+||+|||.+|+||||++|+...+.. ...++.+++..+|+.|+++-.+..+... |.+|-+.+
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~ 299 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLM 299 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999887765542 2478999999999999998888776653 44454444
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.83 E-value=4.6e-08 Score=79.93 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQ 163 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~-----~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~ 163 (189)
.+||+|||++|+||||++|+.-.+. ...+++.+++..+|+.|+++-.+..+...+.
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCY 281 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHH
Confidence 4699999999999999988776554 2348999999999999999888887766543
No 32
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.79 E-value=7e-08 Score=79.80 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIVVAYLMK-----KHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~-----~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
+||+|||.+|+||||++|+.-.+. ...+++.+++..+|..|+++-.+..+..++.+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYK 308 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 699999999999999998865433 23589999999999999998888877765543
No 33
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.78 E-value=4.6e-08 Score=76.48 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH-hcCCcEEEEcCCCCChHHHHHHHHHHHhC-----CCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 94 FDECISFIDEAK-RQRGGVLVHCFAGRSRSVTIVVAYLMKKH-----GMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 94 l~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayL~~~~-----g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
+-.+++.+.... ...++|+|||.+|.||||+++++.++... ..++.+++..+|+.||++..+..+...+..
T Consensus 155 ~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 155 FLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred hhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 445555555544 23579999999999999999998877543 479999999999999999999988777654
No 34
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.77 E-value=1.6e-07 Score=80.44 Aligned_cols=132 Identities=19% Similarity=0.327 Sum_probs=103.3
Q ss_pred ecCCeEeCCccccCCH----HHHHhCCCceEEEeCCCCCC--CCCCCeEEEEEEeccCC--CCchHHHHHHHHHHHHHHH
Q 029680 34 IEQGLFLGSIGAASNK----DALKSRNITHILTVANALAP--AHPNDFVYKVIGVADKE--DTNLSQYFDECISFIDEAK 105 (189)
Q Consensus 34 I~~~Ly~G~~~~~~~~----~~l~~~gi~~VI~l~~~~~~--~~~~~~~~~~ip~~d~~--~~~~~~~l~~~~~~i~~~~ 105 (189)
+.++||+|........ ..-....+..||+|.+.... .......++++|+.... .-++...+.++++|+...+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4668999998862211 12223568899999876542 35677789999998653 4457788999999999999
Q ss_pred hc--CCcEEEEcCCCCChHHHHHHHHHHHhCCCC----------------HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 029680 106 RQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS----------------LSQAMGHVKSRRPQAAPNSGFLLQLQEL 165 (189)
Q Consensus 106 ~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~----------------~~~A~~~v~~~rp~~~~~~~~~~~L~~~ 165 (189)
.+ +++|+|+|..|.+.|.++++|.|+..++-+ ...-+..+-+.+|.+.|++..++.+..|
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 88 899999999999999999999999987531 3446677778889999999999888776
No 35
>PHA02738 hypothetical protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=78.06 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKK-----HGMSLSQAMGHVKSRRPQAAPNSGFLLQLQ 163 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~-----~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~ 163 (189)
.+||+|||.+|+||||++|+.-.+.. ...++.+++..+|+.|+++-.+..+..++.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 35999999999999999776654322 248899999999999999888887775443
No 36
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.69 E-value=3.3e-08 Score=82.48 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=90.9
Q ss_pred HHHHHhC--CCceEEEeCCCCCCC-----CCCCeEEEEEEeccCC-CCch---HHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 49 KDALKSR--NITHILTVANALAPA-----HPNDFVYKVIGVADKE-DTNL---SQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 49 ~~~l~~~--gi~~VI~l~~~~~~~-----~~~~~~~~~ip~~d~~-~~~~---~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
...|+.+ .+.-+||++...... ...++.|+.+...... .++. ......+-.|.+.....++-|+|||.+
T Consensus 54 ~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcth 133 (393)
T KOG2386|consen 54 FELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTH 133 (393)
T ss_pred HHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence 3445444 478899998654322 3667888888776543 3332 222333444555555568899999999
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 029680 118 GRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (189)
Q Consensus 118 G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 170 (189)
|.+|++.++++||+...+++..+|++.+...||...-...++..|...+....
T Consensus 134 G~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 134 GLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred cccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 99999999999999999999999999999999988888888888887765554
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.60 E-value=1.8e-07 Score=74.63 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=72.1
Q ss_pred eEeCCccccCCHH--HHHhCCCceEEEeCCCCCCC---C-CCCe---EEEEEEeccCC-CCchHHHHHHHHHHHHHHHhc
Q 029680 38 LFLGSIGAASNKD--ALKSRNITHILTVANALAPA---H-PNDF---VYKVIGVADKE-DTNLSQYFDECISFIDEAKRQ 107 (189)
Q Consensus 38 Ly~G~~~~~~~~~--~l~~~gi~~VI~l~~~~~~~---~-~~~~---~~~~ip~~d~~-~~~~~~~l~~~~~~i~~~~~~ 107 (189)
.|.++.|...+.. .....++.++|++..+.... + ...+ ....+...+.+ .+......+.+..++...+..
T Consensus 55 ~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 134 (249)
T COG2365 55 DYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLADA 134 (249)
T ss_pred EcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHhhc
Confidence 5666666665544 56666777777777511111 1 1111 11112221111 111122344555555555555
Q ss_pred C-CcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCH
Q 029680 108 R-GGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNS 156 (189)
Q Consensus 108 ~-~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~ 156 (189)
+ ++||+||.+|..|+|.++++|+....+.+...+.+++...++......
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 4 899999999999999999999999977777778888887776544444
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.60 E-value=1.2e-07 Score=69.89 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=44.7
Q ss_pred CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHH
Q 029680 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMK 132 (189)
Q Consensus 72 ~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (189)
..++.|+++|+.|...|.... |+.+++++... ..+.-+.+||.+|.|||.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~-iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPED-IDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHH-HHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHH-HHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999997776665 99999999998 557799999999999999988887664
No 39
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.57 E-value=2.2e-07 Score=84.69 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=61.3
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChHHHHHHH----HHHHh-CCCCHHHHHHHHHHhCCCCCCCH
Q 029680 83 ADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVA----YLMKK-HGMSLSQAMGHVKSRRPQAAPNS 156 (189)
Q Consensus 83 ~d~~~~~~~~~l~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~a----yL~~~-~g~~~~~A~~~v~~~rp~~~~~~ 156 (189)
.|...|+-.++|-++++.|+..... +.+|+|||.+|+||||++++. ||+.+ .-+++.+.+..+|..|-.+..+.
T Consensus 1037 PDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~ 1116 (1144)
T KOG0792|consen 1037 PDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTL 1116 (1144)
T ss_pred ccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccch
Confidence 3555555556677777777777665 669999999999999997654 33333 24889999999999998888888
Q ss_pred HHHHHHH
Q 029680 157 GFLLQLQ 163 (189)
Q Consensus 157 ~~~~~L~ 163 (189)
.+.+++-
T Consensus 1117 ~QYkFVy 1123 (1144)
T KOG0792|consen 1117 SQYKFVY 1123 (1144)
T ss_pred HHhhHHH
Confidence 8777543
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.27 E-value=1.6e-06 Score=72.91 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=69.3
Q ss_pred CHHHHHhCCCceEEEeCCCCCCCC----------------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHH---HHhcC
Q 029680 48 NKDALKSRNITHILTVANALAPAH----------------PNDFVYKVIGVADKEDTNLSQYFDECISFIDE---AKRQR 108 (189)
Q Consensus 48 ~~~~l~~~gi~~VI~l~~~~~~~~----------------~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~---~~~~~ 108 (189)
+...++.+|+-.|-|+.+.....+ ..-.+|+..-++|.+.|.-.--+-.|++-++. .+...
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 455667788888888865322111 11135666666676544322112222333322 22234
Q ss_pred CcEEEEcCCCCChHHHHHHHH-H---HHhCC----CCHHHHHHHHHHhCCCCCCCHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIVVAY-L---MKKHG----MSLSQAMGHVKSRRPQAAPNSGFLLQ 161 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ay-L---~~~~g----~~~~~A~~~v~~~rp~~~~~~~~~~~ 161 (189)
++|.|||++|+||+|++++.= | +...| +++...+.+||+.|.++--.+.+.++
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkF 512 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKF 512 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHH
Confidence 699999999999999965433 2 23334 67999999999999987766655543
No 41
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.03 E-value=9.1e-06 Score=64.32 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHh---cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC--------------HHHHHHHHHHhCCCCCCCH
Q 029680 94 FDECISFIDEAKR---QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS--------------LSQAMGHVKSRRPQAAPNS 156 (189)
Q Consensus 94 l~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~--------------~~~A~~~v~~~rp~~~~~~ 156 (189)
+.+.+++++.... .+++++|||.+|.||||++++.-.+...--+ ....+..+|++|=.+--|.
T Consensus 201 i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~ 280 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNK 280 (302)
T ss_pred HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 5556666666553 4679999999999999998776655443211 3345566777775444455
Q ss_pred HHHHHHHHHHHHHh
Q 029680 157 GFLLQLQELEKSLQ 170 (189)
Q Consensus 157 ~~~~~L~~~~~~l~ 170 (189)
.+..+|..--..+.
T Consensus 281 ~Qf~flY~~~~~l~ 294 (302)
T COG5599 281 TQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444443
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.84 E-value=8.9e-05 Score=63.03 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=41.0
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHH-HHh--C--C-CCHHHHHHHHHHhCCCCCCCHHHHHHH
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYL-MKK--H--G-MSLSQAMGHVKSRRPQAAPNSGFLLQL 162 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL-~~~--~--g-~~~~~A~~~v~~~rp~~~~~~~~~~~L 162 (189)
..++++|||.+|.||||++++.-. +.. . + .+..+.+..+|..|+++..+..+...+
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~ 359 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFI 359 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHH
Confidence 357999999999999999886542 222 1 1 448888889999998877766555433
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.83 E-value=0.00013 Score=60.32 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=65.2
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChHHHHHHHH-HHHhCC----CCHHHHHHHHHHhC
Q 029680 76 VYKVIGVADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVTIVVAY-LMKKHG----MSLSQAMGHVKSRR 149 (189)
Q Consensus 76 ~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ay-L~~~~g----~~~~~A~~~v~~~r 149 (189)
+++...+.|...+.....+..+..-+...+.. .++++|||.+|+||||++++.- |....+ .+.-..+-.+|..|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 33444444655443333355555555555543 5799999999999999977665 333332 56777888888999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHhhccc
Q 029680 150 PQAAPNSGFLLQLQELE-KSLQEIQH 174 (189)
Q Consensus 150 p~~~~~~~~~~~L~~~~-~~l~~~~~ 174 (189)
+.+-.+..++-+|..-- ..+++++.
T Consensus 334 ~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCc
Confidence 99999998888887543 33555444
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.54 E-value=0.00033 Score=62.21 Aligned_cols=92 Identities=15% Similarity=0.368 Sum_probs=58.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHHh-cCCcEEEEcCCCCChHHHHHHHHHHHhC---C---CCHHHHHHHHHHhC
Q 029680 77 YKVIGVADKEDTNLSQYFDECISFIDEAKR-QRGGVLVHCFAGRSRSVTIVVAYLMKKH---G---MSLSQAMGHVKSRR 149 (189)
Q Consensus 77 ~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v~~ayL~~~~---g---~~~~~A~~~v~~~r 149 (189)
+|.+-+.+...|.....+-+|=..++++.. ...+|+|||.+|-||||+-|+.=++... | +++...++++|..|
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 344444455555444445555555555543 2469999999999999995544433221 3 68888999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHH
Q 029680 150 PQAAP-NSGFLLQLQELEKS 168 (189)
Q Consensus 150 p~~~~-~~~~~~~L~~~~~~ 168 (189)
|++-- .+.|.-.|..-..+
T Consensus 975 ~GmVaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 975 PGMVATKDQFEFALTAVAEE 994 (1004)
T ss_pred CcceeehhhhHHHHHHHHHH
Confidence 98555 44555555544443
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.43 E-value=0.00029 Score=65.34 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=44.5
Q ss_pred HHHHHHHHHh----cCCcEEEEcCCCCChHHHHH-----HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHH
Q 029680 97 CISFIDEAKR----QRGGVLVHCFAGRSRSVTIV-----VAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLL 160 (189)
Q Consensus 97 ~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~-----~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~ 160 (189)
+++|+++... ..++++|||.+|.||||+.+ +-.+......+..+.+..+|..|++..-...+.-
T Consensus 715 lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYi 787 (1087)
T KOG4228|consen 715 LLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYI 787 (1087)
T ss_pred HHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHH
Confidence 4455555443 23799999999999999943 3344444558888889999999987555554443
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.23 E-value=0.00064 Score=63.20 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhC----C-CCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKH----G-MSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~----g-~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
.+++.|||.+|.||||+.|++-++... | +|.-.+++.++..||++.-...+.+.+.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHH
Confidence 479999999999999997766544332 3 78889999999999987777766665543
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.21 E-value=0.0012 Score=48.02 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=43.7
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHhc---CCcEEEEcCCCCCh----HHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 029680 83 ADKEDTNLSQYFDECISFIDEAKRQ---RGGVLVHCFAGRSR----SVTIVVAYLMKKHGMSLSQAMGHVKSRRP 150 (189)
Q Consensus 83 ~d~~~~~~~~~l~~~~~~i~~~~~~---~~~VlVHC~~G~~R----S~~v~~ayL~~~~g~~~~~A~~~v~~~rp 150 (189)
.|.++.++.. +-.++..+++.+++ .++.+|||++.-.+ ++.++.+|+|...|+++++|++-+.+.-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 4667777766 67777778877775 56888888876554 47799999999999999999999988764
No 48
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.77 E-value=0.035 Score=37.56 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=19.9
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+|+|..| .||... +.+| ...|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4567999999998 588654 3444 444654
No 49
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.024 Score=49.91 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY 129 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 129 (189)
+..++..+++....+.+|||||..|.+||+-++...
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 444555566666678899999999999998755443
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=94.30 E-value=0.066 Score=38.67 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=39.3
Q ss_pred hCCCceEEEeCCCCCCC--CCCCeEEEEEEeccCC-CCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHH
Q 029680 54 SRNITHILTVANALAPA--HPNDFVYKVIGVADKE-DTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL 130 (189)
Q Consensus 54 ~~gi~~VI~l~~~~~~~--~~~~~~~~~ip~~d~~-~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 130 (189)
..+ ..|||+++..+.. +..+-..+.+|+.+.. ...+.. ..+...+...+..+++|++||..| .||...+ ..|
T Consensus 27 ~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~IivyC~sG-~RS~~Aa-~~L 101 (136)
T PLN02160 27 QSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDILVGCQSG-ARSLKAT-TEL 101 (136)
T ss_pred hCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEEEECCCc-HHHHHHH-HHH
Confidence 345 3689999765532 2333223556653221 111110 011112222235678999999999 5887653 333
Q ss_pred HHhCCCC
Q 029680 131 MKKHGMS 137 (189)
Q Consensus 131 ~~~~g~~ 137 (189)
...|++
T Consensus 102 -~~~G~~ 107 (136)
T PLN02160 102 -VAAGYK 107 (136)
T ss_pred -HHcCCC
Confidence 344654
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.12 Score=35.13 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHhCCCceEEEeCCCCCCCCCCCeE-EEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHH
Q 029680 51 ALKSRNITHILTVANALAPAHPNDFV-YKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY 129 (189)
Q Consensus 51 ~l~~~gi~~VI~l~~~~~~~~~~~~~-~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 129 (189)
.+....-..+|+++.+.+....+-.. ..++|+.+........ . ...+++++|+|..|. ||.. ++.+
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~--~---------~~~~~~ivv~C~~G~-rS~~-aa~~ 80 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLL--E---------LPDDDPIVVYCASGV-RSAA-AAAA 80 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhccc--c---------cCCCCeEEEEeCCCC-ChHH-HHHH
Confidence 34445667899999874432222223 6777766543221111 0 556789999999995 8854 5566
Q ss_pred HHHhCCCC
Q 029680 130 LMKKHGMS 137 (189)
Q Consensus 130 L~~~~g~~ 137 (189)
|... |++
T Consensus 81 L~~~-G~~ 87 (110)
T COG0607 81 LKLA-GFT 87 (110)
T ss_pred HHHc-CCc
Confidence 5555 443
No 52
>PRK01415 hypothetical protein; Validated
Probab=93.50 E-value=0.12 Score=41.30 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.4
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+++|.+|+ ||.. ++++|.. .|++
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~k-Aa~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEK-STSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHHH-HHHHHHH-cCCC
Confidence 45789999999995 8854 5566544 4654
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.48 E-value=0.23 Score=41.73 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHH
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAY 129 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ay 129 (189)
..|..|||||..|.+||+.++...
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 468899999999999998766544
No 54
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=93.29 E-value=0.26 Score=34.93 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 105 KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+..+.+|+|+|..|-.||+.++ +++...|..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 4567899999975435776544 666666763
No 55
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=92.26 E-value=0.56 Score=32.67 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred CceEEEeCCCCCCC-CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCC
Q 029680 57 ITHILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG 135 (189)
Q Consensus 57 i~~VI~l~~~~~~~-~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g 135 (189)
=..|||++++.+.. ..+--.-+++|..+........ .+...+......+.+|+++|..| .||...+ ..| ...|
T Consensus 15 ~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~---~~~~~l~~~~~~~~~ivv~C~~G-~rs~~aa-~~L-~~~G 88 (117)
T cd01522 15 QAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINP---NFLAELEEKVGKDRPVLLLCRSG-NRSIAAA-EAA-AQAG 88 (117)
T ss_pred CeEEEECCCHHHHhcccCCCCceecchhhccccccCH---HHHHHHHhhCCCCCeEEEEcCCC-ccHHHHH-HHH-HHCC
Confidence 35689999765532 1111133555554432211111 12223333334567999999998 4886543 333 3446
Q ss_pred CC
Q 029680 136 MS 137 (189)
Q Consensus 136 ~~ 137 (189)
.+
T Consensus 89 ~~ 90 (117)
T cd01522 89 FT 90 (117)
T ss_pred CC
Confidence 53
No 56
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=92.19 E-value=0.32 Score=43.03 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=23.1
Q ss_pred HHHHHHHh-cCCcEEEEcCCCCChHHHHHHHH
Q 029680 99 SFIDEAKR-QRGGVLVHCFAGRSRSVTIVVAY 129 (189)
Q Consensus 99 ~~i~~~~~-~~~~VlVHC~~G~~RS~~v~~ay 129 (189)
.+|.+++. +|-.|||||..|.+||..|+...
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHH
Confidence 34555555 45899999999999998766443
No 57
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=92.07 E-value=0.29 Score=40.47 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+++|+|+|.+|. ||.. ++.+|.. .|++
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCCC
Confidence 5679999999995 8854 4556554 4654
No 58
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=91.26 E-value=0.45 Score=33.12 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=19.7
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+++|..| +++++.++..| ...|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 4577999999998 55555554444 444654
No 59
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=91.10 E-value=0.59 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+|+|..|. ||..+ +..| ...|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~a-a~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFV-AELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHH-HHHH-HHcCce
Confidence 45679999999994 87553 3344 344664
No 60
>PRK05320 rhodanese superfamily protein; Provisional
Probab=91.04 E-value=0.49 Score=37.99 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
++++|+++|.+|. ||.. ++.+|.. .|++
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCCc
Confidence 5679999999995 8855 5566654 3654
No 61
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=90.20 E-value=3.1 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=20.8
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+++|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3567999999998767765 34444555654
No 62
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=90.03 E-value=1.1 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+|+|..|. ||.. ++..| ...|++
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~~ 92 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGLP 92 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCCC
Confidence 3579999999996 8744 33444 445663
No 63
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=88.46 E-value=0.65 Score=31.29 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=44.4
Q ss_pred hCCCceEEEeCCCCCCC--CCCCeEEEEEEeccC---CCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHH
Q 029680 54 SRNITHILTVANALAPA--HPNDFVYKVIGVADK---EDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVA 128 (189)
Q Consensus 54 ~~gi~~VI~l~~~~~~~--~~~~~~~~~ip~~d~---~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 128 (189)
...=..|||+++..+.. +..+ -.++|+... ........+.............+.+|+++|..|. |+...+.+
T Consensus 10 ~~~~~~liD~R~~~~~~~~hI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYERGHIPG--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHHHHHHSBETT--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHHHHHcCCCCC--Cccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 34556788999654321 2222 377777543 2222333344444444444456778999997775 66554443
Q ss_pred ---HHHHhCCCC
Q 029680 129 ---YLMKKHGMS 137 (189)
Q Consensus 129 ---yL~~~~g~~ 137 (189)
+.+...|++
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 334445654
No 64
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=87.82 E-value=2.5 Score=29.04 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCChHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~ 126 (189)
..+|++||..|-.||+..+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998656876543
No 65
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=86.58 E-value=1 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+|+|..|. ||.. + +.++...|.+
T Consensus 65 ~~~~ivv~c~~g~-~s~~-~-~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA-A-AELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHHH-H-HHHHHHcCCc
Confidence 4679999999985 7644 3 3444555654
No 66
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=86.54 E-value=3.1 Score=34.09 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=56.0
Q ss_pred ecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHh--cCCcE
Q 029680 34 IEQGLFLGSIGAASNKDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKR--QRGGV 111 (189)
Q Consensus 34 I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~--~~~~V 111 (189)
|.|.-.+|.+..+.+...+-+-.=+.|||.++..+... - -+.+-..|+... |+++.+++.++.+ .+++|
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~i------G--~F~gAv~p~~~t-FrefP~~v~~~~~~~~~KkV 175 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAI------G--HFEGAVEPDIET-FREFPAWVEENLDLLKDKKV 175 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEee------e--eecCccCCChhh-hhhhHHHHHHHHHhccCCcE
Confidence 55555566666666655554444477778777665221 1 112334455555 8888888887665 47899
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 112 LVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
+..|++|+ |+=- +.+||... |+
T Consensus 176 vmyCTGGI-RCEK-as~~m~~~-GF 197 (308)
T COG1054 176 VMYCTGGI-RCEK-ASAWMKEN-GF 197 (308)
T ss_pred EEEcCCce-eehh-hHHHHHHh-cc
Confidence 99999999 7733 44554443 54
No 67
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=85.65 E-value=0.66 Score=30.95 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=13.9
Q ss_pred hcCCcEEEEcCCCCChHHH
Q 029680 106 RQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~ 124 (189)
..+++|+++|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45679999999984 6654
No 68
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=85.44 E-value=2.8 Score=28.72 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCChHHHHHHH
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVA 128 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~a 128 (189)
...+|+++|..+-.|+...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3469999998554688765443
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=85.35 E-value=2.3 Score=35.18 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
.+..|+|+|..|-.||..++ .++...|+
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 34459999964446887653 33344465
No 70
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=85.33 E-value=2.5 Score=27.39 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+|+|..|. |+.. ++..+...|.+
T Consensus 54 ~~~~~iv~~c~~g~-~a~~--~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAK--AAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHH--HHHHHHHcCCC
Confidence 35679999996664 6633 23444455654
No 71
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=84.48 E-value=1.5 Score=29.34 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+++|..| .||... +.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 467999999998 587543 444444 5654
No 72
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=84.17 E-value=1.2 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+++|.+| .||...+ ..|. ..|++
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa-~~L~-~~G~~ 86 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK-EILS-EMGYT 86 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH-HHHH-HcCCC
Confidence 356899999998 4765543 3333 34543
No 73
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=82.37 E-value=3 Score=34.96 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
.+.+|+|+|..|-.||+.++ .++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 56799999965546987754 33334464
No 74
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.49 E-value=1.9 Score=30.96 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHhCCCceEEEeCCCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChHHH
Q 029680 49 KDALKSRNITHILTVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQ-RGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~ 124 (189)
...|-..+=...||++.+.+....+--.-+.+|+.-.+..-... =..|.+.+-..... ...|+++|..|. ||..
T Consensus 30 vk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccC-CHHHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 34455556578889987766443333466777775333221111 12223333333332 358999999996 8854
No 75
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=79.48 E-value=1.9 Score=30.04 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
..+++|+|+|..|. ||...+ .+ +...|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RK-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HH-HHHcCC
Confidence 45679999999995 876433 33 344466
No 76
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=78.89 E-value=4.9 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+|+|..|. ||...+ . .+...|++
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a~-~-~L~~~G~~ 84 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGAA-Q-YLLQQGFD 84 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHHH-H-HHHHCCch
Confidence 45679999999985 664432 2 33444654
No 77
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=78.86 E-value=4.1 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=17.1
Q ss_pred hcCCcEEEEcC-CCCChHHHHHHHHHHH
Q 029680 106 RQRGGVLVHCF-AGRSRSVTIVVAYLMK 132 (189)
Q Consensus 106 ~~~~~VlVHC~-~G~~RS~~v~~ayL~~ 132 (189)
....+|++||. +| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 45679999997 66 58766 4445554
No 78
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=78.01 E-value=3 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHh
Q 029680 124 TIVVAYLMKKHGMSLSQAMGHVKSR 148 (189)
Q Consensus 124 ~v~~ayL~~~~g~~~~~A~~~v~~~ 148 (189)
.-+.+.||...|++.++|+++++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4577889999999999999999876
No 79
>PRK07411 hypothetical protein; Validated
Probab=77.87 E-value=3.1 Score=35.50 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=34.8
Q ss_pred eEEEeCCCCCCC--CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 59 HILTVANALAPA--HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 59 ~VI~l~~~~~~~--~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
.|||+++..+.. +.. ..+++|+.+...... .+.+.+. ..+++|+|+|..|. ||.. ++..| ...|+
T Consensus 301 vlIDVR~~~E~~~ghIp--GAiniP~~~l~~~~~-------~~~l~~l-~~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~ 367 (390)
T PRK07411 301 VLIDVRNPNEYEIARIP--GSVLVPLPDIENGPG-------VEKVKEL-LNGHRLIAHCKMGG-RSAK-ALGIL-KEAGI 367 (390)
T ss_pred EEEECCCHHHhccCcCC--CCEEccHHHhhcccc-------hHHHhhc-CCCCeEEEECCCCH-HHHH-HHHHH-HHcCC
Confidence 588999754422 222 234566554322111 1112222 24679999999985 8855 33444 45566
Q ss_pred C
Q 029680 137 S 137 (189)
Q Consensus 137 ~ 137 (189)
+
T Consensus 368 ~ 368 (390)
T PRK07411 368 E 368 (390)
T ss_pred C
Confidence 4
No 80
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=72.42 E-value=7.3 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+|+|+|..|...++..++..| ...|.+
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L-~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRL-SELGYT 78 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHH-HHcCcc
Confidence 67999999998533344444444 444543
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=70.53 E-value=7.4 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+++|..|. ||.. ++.+| ...|++
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 3568999999985 7754 33444 455664
No 82
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=69.92 E-value=10 Score=25.74 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=18.9
Q ss_pred HhcCCcEEEEcCCCCC-hHHHHHHHHHHHhCCCC
Q 029680 105 KRQRGGVLVHCFAGRS-RSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~g~~ 137 (189)
+..+.+|+|+|..|.. ||..++ . .+...|.+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a-~-~l~~~G~~ 92 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA-L-KLAELGFP 92 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH-H-HHHHcCCe
Confidence 3457899999998853 554433 3 33444653
No 83
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=69.76 E-value=16 Score=28.01 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHH
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLM 131 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (189)
+.+..+++.+.+.+.++++|++. |.|+|++++.-+-+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 45888899999999999999985 77788876655544
No 84
>PRK05569 flavodoxin; Provisional
Probab=69.74 E-value=30 Score=24.47 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHhCCCc-eEEEeCCCCCCC-CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCC-hHHHHHHH
Q 029680 52 LKSRNIT-HILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS-RSVTIVVA 128 (189)
Q Consensus 52 l~~~gi~-~VI~l~~~~~~~-~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~-RS~~v~~a 128 (189)
+.+.|+. .++++....... ...+.-.+..|........ .+.+..+++.+.....+++++.+.++.|.+ ..+.-.+.
T Consensus 26 ~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~ 104 (141)
T PRK05569 26 AKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWK 104 (141)
T ss_pred HHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHH
Confidence 4445654 334444322111 2334555566654433211 112444555544333468899999999865 22222233
Q ss_pred HHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 029680 129 YLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (189)
Q Consensus 129 yL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 170 (189)
-.+...|+..-.. ..-...|++.-++.+++|.+.+.
T Consensus 105 ~~l~~~g~~~~~~------~~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 105 DRMKDYGFNVIGD------LAVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred HHHHHCCCeEeee------EEEccCCCHHHHHHHHHHHHHHh
Confidence 3445556554322 11124689999999999988763
No 85
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=69.15 E-value=7.2 Score=31.84 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHh----cCC---cEEEEcCCCCChHHHHH
Q 029680 92 QYFDECISFIDEAKR----QRG---GVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~----~~~---~VlVHC~~G~~RS~~v~ 126 (189)
..++.+.++++.++. +|+ .|-|-|++|..||.+++
T Consensus 219 ~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 219 EFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIA 260 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHH
Confidence 344444444444443 343 67799999999998865
No 86
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=69.09 E-value=6.1 Score=28.86 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCC
Q 029680 95 DECISFIDEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G 118 (189)
+-+|.+++++..+|.+|+|+|..-
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d~ 39 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 378999999999999999999753
No 87
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=67.88 E-value=11 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+++|..|. ||..+ ++.....|.+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCCC
Confidence 5679999999984 66553 3344555654
No 88
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=67.06 E-value=10 Score=27.49 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G 118 (189)
...-+|.+++++..+|.+|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46678999999999999999999764
No 89
>smart00400 ZnF_CHCC zinc finger.
Probab=65.03 E-value=7.9 Score=23.03 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=23.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 029680 112 LVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHV 145 (189)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v 145 (189)
..||.+ -|+.|- ++-++|...|+++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 468875 356665 46777788899999999875
No 90
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=64.86 E-value=16 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=18.4
Q ss_pred HhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 105 KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+..+.+|+|+|..|. ||.. ++. .+...|.+
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~-a~~-~l~~~G~~ 82 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ-LAQ-ALREAGFT 82 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH-HHH-HHHHcCCc
Confidence 346789999999774 6544 333 33444543
No 91
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=64.68 E-value=28 Score=24.73 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=35.1
Q ss_pred EEEEEeccCCCC-chHHHHHHHHHHHHHHHhcCCc-EEEEcCCCCChHHHHHHHHHHHhCC
Q 029680 77 YKVIGVADKEDT-NLSQYFDECISFIDEAKRQRGG-VLVHCFAGRSRSVTIVVAYLMKKHG 135 (189)
Q Consensus 77 ~~~ip~~d~~~~-~~~~~l~~~~~~i~~~~~~~~~-VlVHC~~G~~RS~~v~~ayL~~~~g 135 (189)
.+.+|+.|...+ +.....+.+.+.|.+...+++. .+.-|-+|--++-+++++|.+..+|
T Consensus 56 ~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 56 KIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 344456665433 2344455556666666555542 3444667755777888888887777
No 92
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=64.30 E-value=6.6 Score=26.43 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=34.5
Q ss_pred CcEEEEcCCCCChHHHHHHHH--HHHhCCCC-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 029680 109 GGVLVHCFAGRSRSVTIVVAY--LMKKHGMS-------LSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQE 171 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ay--L~~~~g~~-------~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (189)
.+||+-|.+|++ |+.++--. .....|++ ..+.-..... .--+...+.....+.+++.....
T Consensus 4 ~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~-~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDD-ADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchh-HHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCC-CCEEEECchHHHHHHHHHHHhhh
Confidence 589999999998 44443222 22334543 3332222221 12355677777777777777654
No 93
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=63.83 E-value=17 Score=29.70 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHh----cCC---cEEEEcCCCCChHHHHHH
Q 029680 92 QYFDECISFIDEAKR----QRG---GVLVHCFAGRSRSVTIVV 127 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~----~~~---~VlVHC~~G~~RS~~v~~ 127 (189)
..++.+.++++.++. +|+ .|-|-|++|..||.+++-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 445555555555443 343 477999999999987653
No 94
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=63.43 E-value=10 Score=32.16 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=34.7
Q ss_pred ceEEEeCCCCCCC--CCC-CeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhC
Q 029680 58 THILTVANALAPA--HPN-DFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKH 134 (189)
Q Consensus 58 ~~VI~l~~~~~~~--~~~-~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~ 134 (189)
..+||+++..+.. +.. +....++|+.+..... .....+.. ... .+|+|||..|. ||.. ++..|.. .
T Consensus 287 ~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------~~~~~l~~-~~~-~~Ivv~C~sG~-RS~~-Aa~~L~~-~ 355 (370)
T PRK05600 287 ATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------DILHALSP-IDG-DNVVVYCASGI-RSAD-FIEKYSH-L 355 (370)
T ss_pred eEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------hhhhhccc-cCC-CcEEEECCCCh-hHHH-HHHHHHH-c
Confidence 3689999766532 111 1235666654332110 00111111 122 38999999994 8865 4455543 3
Q ss_pred CC
Q 029680 135 GM 136 (189)
Q Consensus 135 g~ 136 (189)
|+
T Consensus 356 G~ 357 (370)
T PRK05600 356 GH 357 (370)
T ss_pred CC
Confidence 54
No 95
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=62.88 E-value=11 Score=27.05 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G 118 (189)
..-++.+++++..+|.+|+|+|...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4668999999999999999999864
No 96
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=62.82 E-value=44 Score=22.46 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCH---------HHHHHHHHHhCCCC----CCCHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSL---------SQAMGHVKSRRPQA----APNSGFLL 160 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~---------~~A~~~v~~~rp~~----~~~~~~~~ 160 (189)
+..+.++|+...+.|+++++. +++-+||..-.+..| ...|++. ..+..++++..+.. .-+++...
T Consensus 16 ipga~e~l~~L~~~g~~~~~l-TNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFL-TNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEE-ES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEE-eCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 566788888888888777765 555578888777777 5568753 33667777754432 22445554
Q ss_pred HHH
Q 029680 161 QLQ 163 (189)
Q Consensus 161 ~L~ 163 (189)
.|.
T Consensus 94 ~l~ 96 (101)
T PF13344_consen 94 ELR 96 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 97
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=62.21 E-value=9.3 Score=24.98 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCChHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~ 126 (189)
++|++.|.+|+|-|..++
T Consensus 1 ~kilvvCg~G~gtS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMGSSAMGA 18 (87)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 479999999998765433
No 98
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=61.66 E-value=14 Score=24.59 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+.+|+++|..|. ||..++. .+...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCCC
Confidence 568999999986 7755433 33444654
No 99
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=61.56 E-value=9.4 Score=24.13 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHH
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLM 131 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (189)
..+.+|+++|..| .|+.. ++.+|.
T Consensus 48 ~~~~~vv~~c~~~-~~a~~-~~~~l~ 71 (89)
T cd00158 48 DKDKPIVVYCRSG-NRSAR-AAKLLR 71 (89)
T ss_pred CCCCeEEEEeCCC-chHHH-HHHHHH
Confidence 4568999999997 35533 334444
No 100
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=61.04 E-value=12 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+|+|..| .||.. + +..+...|++
T Consensus 59 ~~~~~ivv~c~~g-~~s~~-~-~~~l~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL-A-GKTLQDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH-H-HHHHHHcChH
Confidence 4567999999988 57743 3 3444455643
No 101
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=60.97 E-value=14 Score=24.25 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=19.3
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+|+|..| +||+.+ +.+| ...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCCC
Confidence 4567999999987 577554 3444 445654
No 102
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=60.84 E-value=27 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+|+++|..|. ||... +..|. ..|++
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L~-~~G~~ 84 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDILL-DMGYT 84 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHHH-HcCCC
Confidence 4568999999994 77654 33333 34553
No 103
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=59.81 E-value=19 Score=30.57 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=12.0
Q ss_pred HHHhcCCcEEEEcCCC
Q 029680 103 EAKRQRGGVLVHCFAG 118 (189)
Q Consensus 103 ~~~~~~~~VlVHC~~G 118 (189)
+.+..|..||.||.+|
T Consensus 162 ~~I~dg~~ILThcnsg 177 (363)
T PRK05772 162 EKLNDGDTVLTQCNAG 177 (363)
T ss_pred hhcCCCCEEEEecCCc
Confidence 3334677899999887
No 104
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=59.76 E-value=16 Score=26.95 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G 118 (189)
.+.-+|.+++++..+|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 36678999999999999999999644
No 105
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=59.43 E-value=11 Score=30.22 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 116 FAGRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
--|++|||+.+.+-++. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 47999999988887764 8888877654
No 106
>PRK13938 phosphoheptose isomerase; Provisional
Probab=59.41 E-value=35 Score=26.19 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHh
Q 029680 89 NLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKK 133 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (189)
.+.+.+.++.+.+.+.+.+|++|++. |.|.|+.++.-.-...
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 34556788888888889999999974 6667877665554444
No 107
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=58.99 E-value=27 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=27.8
Q ss_pred CCCCChHHHHHHHHHHHhCCC----CHHHHHHHHHHhCC
Q 029680 116 FAGRSRSVTIVVAYLMKKHGM----SLSQAMGHVKSRRP 150 (189)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~~g~----~~~~A~~~v~~~rp 150 (189)
..|.-|++.+++..++...|+ +.+++.+++...--
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~ 106 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVAT 106 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHC
Confidence 478899999999999998884 47777777776653
No 108
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=57.86 E-value=24 Score=29.56 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.1
Q ss_pred HhcCC----cEEEEcCCC
Q 029680 105 KRQRG----GVLVHCFAG 118 (189)
Q Consensus 105 ~~~~~----~VlVHC~~G 118 (189)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34566 799999987
No 109
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=56.48 E-value=19 Score=31.59 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=18.9
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
..+++++++|..|. ||... +.+|. ..|+
T Consensus 447 ~~~~~iivyC~~G~-rS~~a-a~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQ-ALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHH-HHHHH-HcCC
Confidence 45679999999995 87554 44443 3454
No 110
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=56.10 E-value=26 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHh----cCC---cEEEEcCCCCChHHHHH
Q 029680 93 YFDECISFIDEAKR----QRG---GVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 93 ~l~~~~~~i~~~~~----~~~---~VlVHC~~G~~RS~~v~ 126 (189)
++.++.++++.++. +|+ .|.|-|++|..||.+++
T Consensus 221 f~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 221 FYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHH
Confidence 34444445544442 344 56799999999998865
No 111
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=56.09 E-value=6 Score=26.87 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.9
Q ss_pred CcEEEEcCCC
Q 029680 109 GGVLVHCFAG 118 (189)
Q Consensus 109 ~~VlVHC~~G 118 (189)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5999999977
No 112
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.31 E-value=26 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+|+++|..|. ||.. ++. ++...|++
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-aa~-~L~~~G~~ 83 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-AAA-TLRELGYT 83 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-HHH-HHHHcCCC
Confidence 45789999999984 7754 333 34455653
No 113
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=55.21 E-value=13 Score=30.23 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 117 AGRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
-|+||||+.+.+-++. |++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 6999999988777664 8887776653
No 114
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=54.37 E-value=50 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCeeecCCeEeCCccccCCHHH--HHhCCCceEE-EeC
Q 029680 30 VPFEIEQGLFLGSIGAASNKDA--LKSRNITHIL-TVA 64 (189)
Q Consensus 30 ~~~~I~~~Ly~G~~~~~~~~~~--l~~~gi~~VI-~l~ 64 (189)
.|+-+.|++|+-+..+. +.+. |++.||+.|| |..
T Consensus 13 ~p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~DkD 49 (168)
T PF09419_consen 13 NPSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIFDKD 49 (168)
T ss_pred CccccCCCEEcCChhhC-CcchhhhhhcCceEEEEcCC
Confidence 47889999999887765 6677 9999999988 443
No 115
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=54.24 E-value=14 Score=29.68 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 117 AGRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
-|+||||+.+.+-+.. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 6999999988877664 8887776553
No 116
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=52.83 E-value=29 Score=29.14 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=14.5
Q ss_pred HHHhcCCcEEEEcCCCCChH
Q 029680 103 EAKRQRGGVLVHCFAGRSRS 122 (189)
Q Consensus 103 ~~~~~~~~VlVHC~~G~~RS 122 (189)
+.+..|..||.||.+|.-++
T Consensus 143 ~~I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 143 KLLEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred HHccCCCEEEEecCCccccc
Confidence 33446778999999986554
No 117
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=52.64 E-value=16 Score=29.65 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 117 AGRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
-|++|||+.+.+-+.. |++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 6999999988777664 8887776653
No 118
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=52.21 E-value=35 Score=28.69 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=12.1
Q ss_pred HhcCCcEEEEcCCCC
Q 029680 105 KRQRGGVLVHCFAGR 119 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~ 119 (189)
+..|..||.||.+|.
T Consensus 144 I~~g~~ILThc~sg~ 158 (344)
T PRK05720 144 IRKGQGILTHCNAGW 158 (344)
T ss_pred ccCCCEEEEecCCCc
Confidence 446778999999985
No 119
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=52.13 E-value=29 Score=27.73 Aligned_cols=54 Identities=19% Similarity=0.008 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHH------HHHhCCCCHHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY------LMKKHGMSLSQAMGHVKS 147 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay------L~~~~g~~~~~A~~~v~~ 147 (189)
.+-+..+++-+.+.+.+|.|||....+..--+.-.+ +++.+.-+.+.|..+++.
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 455666677777778999999998665544433332 233334467888887775
No 120
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=52.09 E-value=17 Score=24.51 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=24.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 112 LVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 112 lVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
..||.+ -|.+|- ++.++|...|+++.+|++.+.+..
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHh
Confidence 678985 467776 466778888999999999998765
No 121
>PLN02449 ferrochelatase
Probab=50.65 E-value=59 Score=28.75 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=61.0
Q ss_pred hhhHHhHHHHHHHHHHhhhhh--cccCCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC----------
Q 029680 3 QMDNAYRNQIAAILRVLNLTT--CLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA---------- 70 (189)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~---------- 70 (189)
-|+.+....+..++..+...- ......+=+++.|.=|+|+.-. ...+.|...|++.|+-+....--.
T Consensus 297 pY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~-d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDi 375 (485)
T PLN02449 297 PYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTD-ETIVELGKKGVKSLLAVPISFVSEHIETLEEIDM 375 (485)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHH-HHHHHHHHcCCCeEEEECCcccccchHHHHHHHH
Confidence 355555555666665543310 0011122334556668888664 356778889999988776432111
Q ss_pred ------CCCCe-EEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEc
Q 029680 71 ------HPNDF-VYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHC 115 (189)
Q Consensus 71 ------~~~~~-~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC 115 (189)
...|+ +|.++|..+..+. +++.+.+.+.+.+...+...+.|
T Consensus 376 E~re~a~e~G~~~~~rVP~LN~~p~----FI~~La~lV~~~l~~~~~~~~~~ 423 (485)
T PLN02449 376 EYRELALESGIENWGRVPALGCEPT----FISDLADAVIEALPYVGAMAVSN 423 (485)
T ss_pred HHHHHHHHcCCceEEEcCCCCCCHH----HHHHHHHHHHHHhhccccccccc
Confidence 14566 6899998755443 45666777777766423334333
No 122
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=49.75 E-value=38 Score=23.16 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=33.9
Q ss_pred CcEEEEcCCCCChHHHH-HHHHHHHhCCCCHH-HH--HHHHHHhCC---CCCCCHHHHHHHHHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTI-VVAYLMKKHGMSLS-QA--MGHVKSRRP---QAAPNSGFLLQLQELEKSL 169 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v-~~ayL~~~~g~~~~-~A--~~~v~~~rp---~~~~~~~~~~~L~~~~~~l 169 (189)
++||+.|.+|.|-|-.+ -+--.....|++.+ +| ......... -+...|.....+.+.....
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~ 71 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLL 71 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhc
Confidence 58999999999877555 33333355565421 12 222222222 2555676666666665443
No 123
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.41 E-value=16 Score=25.03 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=30.6
Q ss_pred CcEEEEcCCCCChHHHHHHHHH---HHhCCCC-------HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHhh
Q 029680 109 GGVLVHCFAGRSRSVTIVVAYL---MKKHGMS-------LSQAMGHVKSRRP-QAAPNSGFLLQLQELEKSLQE 171 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL---~~~~g~~-------~~~A~~~v~~~rp-~~~~~~~~~~~L~~~~~~l~~ 171 (189)
++||+.|.+|++-| +++--+ +...|.+ ..+.-..+..... -+...+.....+.++++....
T Consensus 2 kkILlvCg~G~STS--lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~ 73 (104)
T PRK09590 2 KKALIICAAGMSSS--MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK 73 (104)
T ss_pred cEEEEECCCchHHH--HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh
Confidence 37999999999444 332222 2233443 2222222221111 245566666667777766543
No 124
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=48.77 E-value=50 Score=25.99 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=36.6
Q ss_pred EEeccCCCC-chHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 80 IGVADKEDT-NLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 80 ip~~d~~~~-~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
.|+.|...+ +.....+.+++.|.+...+.+..+.-|-+|--++-++.++|.+..+|-
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr 139 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGR 139 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCC
Confidence 444454322 233445566677777666645666667888667888888888877773
No 125
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=48.50 E-value=13 Score=24.06 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=12.9
Q ss_pred cEEEEcCCCCChHHHH
Q 029680 110 GVLVHCFAGRSRSVTI 125 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v 125 (189)
+|++-|.+|++-|-.+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 6899999999777554
No 126
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=48.45 E-value=22 Score=30.26 Aligned_cols=29 Identities=38% Similarity=0.533 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+++|..|. ||.. ++.+| ...|++
T Consensus 341 ~~d~~iVvyC~~G~-rS~~-aa~~L-~~~G~~ 369 (392)
T PRK07878 341 PQDRTIVLYCKTGV-RSAE-ALAAL-KKAGFS 369 (392)
T ss_pred CCCCcEEEEcCCCh-HHHH-HHHHH-HHcCCC
Confidence 45679999999984 7744 33333 444654
No 127
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=47.84 E-value=29 Score=28.68 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=18.2
Q ss_pred HhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 105 KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+..+++|+++|..|. |++. +. +.++..|++
T Consensus 266 i~~~~~iv~yC~sG~-~A~~-~~-~~L~~~G~~ 295 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TACI-LA-LGLHRLGKT 295 (320)
T ss_pred CCCCCCEEEECCcHH-HHHH-HH-HHHHHcCCC
Confidence 345679999999975 5433 32 223445653
No 128
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=47.40 E-value=49 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhC
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKH 134 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~ 134 (189)
|.++++.|-++ .++|+| .|.||||.++=++-|...
T Consensus 28 ~~~a~~~i~~~---~gkv~V---~G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 28 FVRAVELILEC---KGKVFV---TGVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHhc---CCcEEE---EcCChhHHHHHHHHHHHH
Confidence 44444444433 568887 599999998877766554
No 129
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=46.95 E-value=1.3e+02 Score=26.16 Aligned_cols=55 Identities=15% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEcC----------------CCCChHHHHHHHHHHHhCCC-C----HHHHHHHHHHh
Q 029680 94 FDECISFIDEAKRQR-GGVLVHCF----------------AGRSRSVTIVVAYLMKKHGM-S----LSQAMGHVKSR 148 (189)
Q Consensus 94 l~~~~~~i~~~~~~~-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~g~-~----~~~A~~~v~~~ 148 (189)
-+.+++.|+++.++| .-+-|||. +=+||.|++.++|+++...- + +++-++..++.
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~y 218 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEY 218 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHh
Confidence 345677777777776 35668996 34689999999999987653 3 44444444443
No 130
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=45.89 E-value=1.4e+02 Score=25.79 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=54.5
Q ss_pred HHhCCCceEEEeCCCCCCC-CCCC-eEEEEEEeccCCCC--------chHH-HHHHHHHHHHHHHhcC-CcEEEEcC---
Q 029680 52 LKSRNITHILTVANALAPA-HPND-FVYKVIGVADKEDT--------NLSQ-YFDECISFIDEAKRQR-GGVLVHCF--- 116 (189)
Q Consensus 52 l~~~gi~~VI~l~~~~~~~-~~~~-~~~~~ip~~d~~~~--------~~~~-~l~~~~~~i~~~~~~~-~~VlVHC~--- 116 (189)
...+|..+|.+|+...... +... +....+|+.-.|.. ++.+ .-+.+++.|+++.++| .-+-|||.
T Consensus 86 A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~ 165 (423)
T TIGR00190 86 AIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLL 165 (423)
T ss_pred HHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH
Confidence 3458999999998765422 1000 11112222111111 1111 1456677777777776 35668996
Q ss_pred -------------CCCChHHHHHHHHHHHhCCC-C----HHHHHHHHHHh
Q 029680 117 -------------AGRSRSVTIVVAYLMKKHGM-S----LSQAMGHVKSR 148 (189)
Q Consensus 117 -------------~G~~RS~~v~~ayL~~~~g~-~----~~~A~~~v~~~ 148 (189)
+=+||.|++.++|+++...- + +++-++..++.
T Consensus 166 ~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~y 215 (423)
T TIGR00190 166 EYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEY 215 (423)
T ss_pred HHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHh
Confidence 33689999999999988653 3 34444444443
No 131
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.06 E-value=1.4e+02 Score=24.94 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHHHHhCCCceEEEeCCCCCCC-----------CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 49 KDALKSRNITHILTVANALAPA-----------HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~-----------~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
.+..++.|....+++....... ...+. ..+-+.|..-.-....+...+..+.+.+..+-+|-+||++
T Consensus 120 i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 120 IGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGA--DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCC--CEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 4555666766666665332111 01122 2344556543333444667777777766544689999998
Q ss_pred CCChHHHHHHHH
Q 029680 118 GRSRSVTIVVAY 129 (189)
Q Consensus 118 G~~RS~~v~~ay 129 (189)
..|-+.+-+++.
T Consensus 198 nlGla~ANslaA 209 (333)
T TIGR03217 198 NLSLAVANSIAA 209 (333)
T ss_pred CCchHHHHHHHH
Confidence 776665544443
No 132
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=43.64 E-value=1.1e+02 Score=26.34 Aligned_cols=97 Identities=9% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHhCCCceEEEeCCCCCCCC-------CCCeEEEEEEeccCC----CCchHHHHHHHHHHHHHHHhcC-CcEEEEcC---
Q 029680 52 LKSRNITHILTVANALAPAH-------PNDFVYKVIGVADKE----DTNLSQYFDECISFIDEAKRQR-GGVLVHCF--- 116 (189)
Q Consensus 52 l~~~gi~~VI~l~~~~~~~~-------~~~~~~~~ip~~d~~----~~~~~~~l~~~~~~i~~~~~~~-~~VlVHC~--- 116 (189)
...+|..+|.+|+......- ...+-.--+|+-... .....-..+.+++.|++..++| .-+-|||.
T Consensus 85 A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~ 164 (420)
T PF01964_consen 85 AEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITR 164 (420)
T ss_dssp HHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--G
T ss_pred HHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 35589999999987654220 223333444443211 0011112466788888887776 35669997
Q ss_pred -------------CCCChHHHHHHHHHHHhCCCC-----HHHHHHHHHHh
Q 029680 117 -------------AGRSRSVTIVVAYLMKKHGMS-----LSQAMGHVKSR 148 (189)
Q Consensus 117 -------------~G~~RS~~v~~ayL~~~~g~~-----~~~A~~~v~~~ 148 (189)
+=+||.|++.++|+++...-. +++-++..++.
T Consensus 165 ~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~y 214 (420)
T PF01964_consen 165 ETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEY 214 (420)
T ss_dssp GGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTT
T ss_pred HHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHh
Confidence 447999999999999986532 45555555543
No 133
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=43.30 E-value=60 Score=25.38 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSR 148 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~ 148 (189)
+++|.|||..- +....++-+||....++-+++..++++.
T Consensus 185 NGriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 185 NGRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred CceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 57999999873 6667788889999999999888777664
No 134
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=42.99 E-value=99 Score=25.30 Aligned_cols=78 Identities=12% Similarity=0.231 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCC----hHHHHHHHHHHHhCCCC-HHHHHHHHHHhCCC----CCCCHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRS----RSVTIVVAYLMKKHGMS-LSQAMGHVKSRRPQ----AAPNSGFLLQLQE 164 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~----RS~~v~~ayL~~~~g~~-~~~A~~~v~~~rp~----~~~~~~~~~~L~~ 164 (189)
.+.+.+.+.+.+..||+++.|+..+.. +.+..+..|.---.-++ ..+....++..... -...+.+...|..
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 567788888888999999999999988 77777777755543344 45555555555432 2334567778888
Q ss_pred HHHHHhh
Q 029680 165 LEKSLQE 171 (189)
Q Consensus 165 ~~~~l~~ 171 (189)
|...+..
T Consensus 235 W~~~f~~ 241 (283)
T COG2230 235 WRERFEA 241 (283)
T ss_pred HHHHHHH
Confidence 8776654
No 135
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=42.64 E-value=45 Score=30.33 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
..+++|+++|..|. ||+.+. +.+...|+
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 45679999999985 665432 33345564
No 136
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=42.43 E-value=20 Score=29.29 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.7
Q ss_pred HhcCCcEEEEcCCCCChHH
Q 029680 105 KRQRGGVLVHCFAGRSRSV 123 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~ 123 (189)
+...+.|+++|..|. |++
T Consensus 231 i~~~~~vI~yCgsG~-~As 248 (285)
T COG2897 231 IDPDKEVIVYCGSGV-RAS 248 (285)
T ss_pred CCCCCCEEEEcCCch-HHH
Confidence 455789999999996 443
No 137
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=42.38 E-value=19 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+++|+++|..|. ||+. +..+| ...|++
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~~~l-~~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VVLAL-ATLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHH-HHcCCC
Confidence 34679999999986 6644 33333 455654
No 138
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.14 E-value=25 Score=23.49 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChHHHHHHH
Q 029680 110 GVLVHCFAGRSRSVTIVVA 128 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~~a 128 (189)
+||+-|.+|++-|-.++.-
T Consensus 4 kILvvCgsG~~TS~m~~~k 22 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEE 22 (94)
T ss_pred eEEEECCCchhHHHHHHHH
Confidence 7999999999877654433
No 139
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=41.02 E-value=32 Score=27.93 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=18.3
Q ss_pred CCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 117 AGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 117 ~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
-|.||||+.+.+-|.. |++-++|.+
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHH
Confidence 6899999877776653 777666554
No 140
>PF12643 MazG-like: MazG-like family
Probab=40.69 E-value=1.1e+02 Score=20.64 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHH-hCCCC---HHHHHH-HHHHhCCCCCCC-HHHHHHHHHHHHHHhhc
Q 029680 121 RSVTIVVAYLMK-KHGMS---LSQAMG-HVKSRRPQAAPN-SGFLLQLQELEKSLQEI 172 (189)
Q Consensus 121 RS~~v~~ayL~~-~~g~~---~~~A~~-~v~~~rp~~~~~-~~~~~~L~~~~~~l~~~ 172 (189)
-+..++.+|++. +.|++ +++++. .++.-. .-.|. +....-|..+.++++++
T Consensus 41 LAdvii~~ylLa~rLGid~~~lD~~i~~KL~~~~-~k~~~~Ek~~gdls~l~~~l~~r 97 (98)
T PF12643_consen 41 LADVIIYCYLLADRLGIDFRELDEIIKEKLKKNI-EKYPVLEKWYGDLSKLEQHLKKR 97 (98)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc-cccchHHHHhccHHHHHHHHhcc
Confidence 355788888655 45999 444442 222211 12222 45555677777777554
No 141
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.57 E-value=50 Score=24.47 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH--hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 95 DECISFIDEAK--RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 95 ~~~~~~i~~~~--~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+++.+.. ..+.+|+|-|..|.|=.=.+++|-.....|+.
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~ 54 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN 54 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 35566777777 66789999999998877556666555666765
No 142
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=40.55 E-value=56 Score=27.65 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.2
Q ss_pred cCCcEEEEcCCCC
Q 029680 107 QRGGVLVHCFAGR 119 (189)
Q Consensus 107 ~~~~VlVHC~~G~ 119 (189)
.| .||.||.+|-
T Consensus 160 dg-~ILTHcnaG~ 171 (356)
T PRK08334 160 EG-NVLTHCNAGS 171 (356)
T ss_pred CC-CEEEecCcch
Confidence 44 4999998874
No 143
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=39.37 E-value=1.8e+02 Score=22.64 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=40.4
Q ss_pred CHHHHHhCCCceEEEeCCC---CCCCC---CCCeEEEEEEeccCC---CCc-hHHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 48 NKDALKSRNITHILTVANA---LAPAH---PNDFVYKVIGVADKE---DTN-LSQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 48 ~~~~l~~~gi~~VI~l~~~---~~~~~---~~~~~~~~ip~~d~~---~~~-~~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
-.+.|++.|+..|++-... .+... ..++.|+++--.+.. ... ....++...+.|..+..+++.|+|...+
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3678899999999877655 33221 236666666443322 111 1244889999999998888888876665
Q ss_pred C
Q 029680 118 G 118 (189)
Q Consensus 118 G 118 (189)
-
T Consensus 214 ~ 214 (230)
T PF01904_consen 214 D 214 (230)
T ss_dssp B
T ss_pred C
Confidence 3
No 144
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=39.20 E-value=51 Score=22.14 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCChHHHHHHHH--HHHhCCCC
Q 029680 109 GGVLVHCFAGRSRSVTIVVAY--LMKKHGMS 137 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ay--L~~~~g~~ 137 (189)
.+||+-|.+|+|-|-.+.... ++..+|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 489999999999997765544 45555664
No 145
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=38.71 E-value=42 Score=27.00 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHH------HHhCCCCHHHHHHHHHH-hCCCCCCCHHHHH--HHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL------MKKHGMSLSQAMGHVKS-RRPQAAPNSGFLL--QLQE 164 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL------~~~~g~~~~~A~~~v~~-~rp~~~~~~~~~~--~L~~ 164 (189)
.+-+..+|+-+.+.+.+|.|||+......-.+.-.+. ++.+.-+.+.|.+.+.. .+-++...-.|.+ .+++
T Consensus 111 ~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~~~~e 190 (256)
T COG0084 111 EEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAEKLRE 190 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcHHHHH
Confidence 4556777777888889999999987766655444432 33334578888888844 3333444444444 5555
Q ss_pred HHHHHhhcccccccccC
Q 029680 165 LEKSLQEIQHIGFTLTG 181 (189)
Q Consensus 165 ~~~~l~~~~~~~~~~~~ 181 (189)
.-+.+--.+-+-++-++
T Consensus 191 v~~~iPldrLL~ETDsP 207 (256)
T COG0084 191 VARELPLDRLLLETDAP 207 (256)
T ss_pred HHHhCCHhHeEeccCCC
Confidence 55544333333333333
No 146
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=38.25 E-value=1.9e+02 Score=22.66 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHH----hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 90 LSQYFDECISFIDEAK----RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 90 ~~~~l~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
+...+..+..+.++.+ .+|+.|+|+|.+.. .=+++++..|.+.++...
T Consensus 134 L~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 134 LKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKE 185 (214)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhh
Confidence 4444555555555443 46889999998843 335567777888665443
No 147
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=38.20 E-value=37 Score=26.12 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHh
Q 029680 126 VVAYLMKKHGMSLSQAMGHVKSR 148 (189)
Q Consensus 126 ~~ayL~~~~g~~~~~A~~~v~~~ 148 (189)
+=+.||..+|++-+||+.++|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 44679999999999999999876
No 148
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.10 E-value=1.8e+02 Score=24.32 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=44.7
Q ss_pred HHHHHhCCCceEEEeCCCCCCC-----------CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 49 KDALKSRNITHILTVANALAPA-----------HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~-----------~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
.+..++.|....+++....... ...+. ..+-+.|..-.-....+...+..+.+.+..+-+|-+||++
T Consensus 121 i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 121 IGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGA--QCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCC--CEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4455666777776665432211 01222 2345556643333444666777777666435689999998
Q ss_pred CCChHHHHHHHH
Q 029680 118 GRSRSVTIVVAY 129 (189)
Q Consensus 118 G~~RS~~v~~ay 129 (189)
..|-+.+-+++.
T Consensus 199 nlGla~ANslaA 210 (337)
T PRK08195 199 NLGLGVANSLAA 210 (337)
T ss_pred CcchHHHHHHHH
Confidence 777665544443
No 149
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=37.93 E-value=96 Score=25.18 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHH
Q 029680 95 DECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL 130 (189)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 130 (189)
..+++.|.+.+.+|+.+++.-..|.|.|-++.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 455677777777889999999999999976655544
No 150
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=37.93 E-value=96 Score=25.18 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHH
Q 029680 95 DECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYL 130 (189)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 130 (189)
..+++.|.+.+.+|+.+++.-..|.|.|-++.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 455677777777889999999999999976655544
No 151
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=37.71 E-value=1.1e+02 Score=23.86 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC---------HHHHHHHHHHhCCC----CCCCHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS---------LSQAMGHVKSRRPQ----AAPNSGFLL 160 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~---------~~~A~~~v~~~rp~----~~~~~~~~~ 160 (189)
+..+.++|.....+|.++.+...+ .+||..-.+..|....|.+ ...+..++++..|. +.-+++...
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~-~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNN-SSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECC-CCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 556788888888888777776554 4799998889998866642 34466778765543 222455665
Q ss_pred HHHHH
Q 029680 161 QLQEL 165 (189)
Q Consensus 161 ~L~~~ 165 (189)
.|+.+
T Consensus 95 ~l~~~ 99 (236)
T TIGR01460 95 SLEGL 99 (236)
T ss_pred HHHHc
Confidence 66543
No 152
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.08 E-value=57 Score=23.08 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=42.8
Q ss_pred CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEcCCCCChHHHHHHHHHHHhCCC---------CHHHH
Q 029680 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAK-RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM---------SLSQA 141 (189)
Q Consensus 72 ~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~---------~~~~A 141 (189)
..|+.|-.+.+.........- +-..++-.+.++ -.+-+.-.-|. |-.|+--++ .||+...|. +-+||
T Consensus 57 k~GLkYAAvEVPsGVRGRmal-iGPLIEeadAAIi~~~~p~~FGCi-GC~RTNEl~-~ylvR~k~iPiLelkYP~s~Eea 133 (152)
T COG4050 57 KRGLKYAAVEVPSGVRGRMAL-IGPLIEEADAAIIVEEAPFGFGCI-GCARTNELC-VYLVRRKGIPILELKYPRSEEEA 133 (152)
T ss_pred cccceeeEEecCCCccceeee-eehhhhhcceeeEeccCCccccee-cccccchHH-HHHhhhcCCceEEEeCCCcHHHH
Confidence 567788777766554333221 222222222221 12334444554 457887765 678888775 56889
Q ss_pred HHHHHHhC
Q 029680 142 MGHVKSRR 149 (189)
Q Consensus 142 ~~~v~~~r 149 (189)
.++|+.++
T Consensus 134 ~~~VnkI~ 141 (152)
T COG4050 134 IDFVNKIA 141 (152)
T ss_pred HHHHHHHH
Confidence 99988887
No 153
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=36.93 E-value=2.3e+02 Score=25.91 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCcEEE-EcCCCCChHHHHHHHH----HHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 90 LSQYFDECISFIDEAKRQRGGVLV-HCFAGRSRSVTIVVAY----LMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 90 ~~~~l~~~~~~i~~~~~~~~~VlV-HC~~G~~RS~~v~~ay----L~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
+.+.+.++...|++++-.|++|+| |-..+-|-++.+++-+ |+...+-+.+ |--++-.+||+-.|--++....+.
T Consensus 325 L~p~m~~vAk~irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~D-Aeyh~~KRrPskAPfYeleDvtrD 403 (715)
T COG1107 325 LKPDMVDVAKEIRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDED-AEYHLFKRRPSKAPFYELEDVTRD 403 (715)
T ss_pred hhHHHHHHHHHHHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChh-hhhHHhhcCcccCCceeHHhhhhh
Confidence 445677788888888888999887 5566667777776654 5555555544 555555778887777666666555
Q ss_pred HHHHH
Q 029680 165 LEKSL 169 (189)
Q Consensus 165 ~~~~l 169 (189)
....|
T Consensus 404 l~~aL 408 (715)
T COG1107 404 LNFAL 408 (715)
T ss_pred HHHHH
Confidence 54433
No 154
>PF14746 WASH-7_C: WASH complex subunit 7, C-terminal
Probab=36.42 E-value=1.1e+02 Score=22.99 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCC-CCHHHHHHHHHHhC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHG-MSLSQAMGHVKSRR 149 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g-~~~~~A~~~v~~~r 149 (189)
.++..+..-++..++++.=.++|-.|. ++.+||+....+ ++.-+++.+.++.+
T Consensus 59 ~ve~~i~~Kekl~Kk~k~~~~ftDDGF----a~GvAyiLklLdQ~~~FdsLhWF~Sv~ 112 (170)
T PF14746_consen 59 YVEYMIQCKEKLFKKNKEGASFTDDGF----AMGVAYILKLLDQYDEFDSLHWFESVK 112 (170)
T ss_pred HHHHHHHhHHHHHhcCCCCCeeecccH----HHHHHHHHHHhcchhhhhhcccHHHHH
Confidence 355555555555556666667899998 899999888775 66667777666665
No 155
>PRK13936 phosphoheptose isomerase; Provisional
Probab=36.05 E-value=1.3e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHH
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVV 127 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 127 (189)
+.+..+++.+.+.+.++++|.+. |.|.|+.++.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 34667788888888889899986 6667766553
No 156
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.57 E-value=33 Score=22.92 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=31.7
Q ss_pred cEEEEcCCCCChHHHHHHHH--HHHhCCCC-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 029680 110 GVLVHCFAGRSRSVTIVVAY--LMKKHGMS-------LSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~~ay--L~~~~g~~-------~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 170 (189)
+||+-|.+|++-| .++-.. ++...|++ ..++-.... ..--+...|.+...+.++++...
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~-~~Diil~~Pqv~~~~~~i~~~~~ 68 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELEEYID-DADVVLLGPQVRYMLDEVKKKAA 68 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHHHhcC-CCCEEEEChhHHHHHHHHHHHhc
Confidence 5899999999666 332211 22333442 333222211 12236667777777777776553
No 157
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=35.43 E-value=40 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.1
Q ss_pred cEEEEc-CCCCChHHHHHHHHHHHhCCCC
Q 029680 110 GVLVHC-FAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 110 ~VlVHC-~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
-+.||. ..|.||++-+.+-+++...|.+
T Consensus 119 f~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 119 LVAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred HheecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 467888 7999999999999988888865
No 158
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=34.95 E-value=74 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEcC-CCCChHHHHHHHHHHHhCCC
Q 029680 87 DTNLSQYFDECISFIDEAKRQRGGVLVHCF-AGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 87 ~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~-~G~~RS~~v~~ayL~~~~g~ 136 (189)
.|...+.++.+++.|.++++++++|+|.+. .+=|-++++++.......|.
T Consensus 33 ~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 33 DPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred ChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 333344588889999999988888887655 44455666666555555553
No 159
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=33.69 E-value=53 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=13.7
Q ss_pred HhcCCcEEEEcCCCCChHHH
Q 029680 105 KRQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 105 ~~~~~~VlVHC~~G~~RS~~ 124 (189)
+..+++|+++|..|. |+..
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~ 66 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYI 66 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHH
Confidence 345679999999873 5544
No 160
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.96 E-value=1.1e+02 Score=23.29 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHH
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTI 125 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 125 (189)
+.+.++++.|.+.+.+|++|++. |.|.|+.+
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 45889999999999999999875 44455553
No 161
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=32.53 E-value=1.2e+02 Score=25.29 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=33.7
Q ss_pred hHHhHHHHHHHHHHhhhhhcccCCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCC
Q 029680 5 DNAYRNQIAAILRVLNLTTCLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANA 66 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~ 66 (189)
..+......-+...+-.........+=++..+.=|+++..+ ...+.|...|++.|+-++-.
T Consensus 206 ~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~-~~l~~L~~~g~k~iiv~pig 266 (320)
T COG0276 206 PQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTD-DLLEELGEKGVKKIIVVPIG 266 (320)
T ss_pred HHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHH-HHHHHHHhcCCCeEEEECCc
Confidence 33333344444443332233333333345555667777664 35677878899999888743
No 162
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=32.08 E-value=50 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 96 ECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
.+.++-.+.+..|..||.||.+|-
T Consensus 125 ~I~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 125 KIGEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCc
Confidence 344455555567889999999884
No 163
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=31.70 E-value=1.3e+02 Score=24.95 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=40.2
Q ss_pred hcCCcEEEEcCCCCC-hHHHHHHHHHHHhCC----CCHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHh
Q 029680 106 RQRGGVLVHCFAGRS-RSVTIVVAYLMKKHG----MSLSQAMGHVKSRRPQAAPNSGFLL---QLQELEKSLQ 170 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~g----~~~~~A~~~v~~~rp~~~~~~~~~~---~L~~~~~~l~ 170 (189)
..|-+|+.|+..|++ ++|+ +=++...| .+++++.+.+.+......+-+.|-. .|....+.+.
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg 166 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRELG 166 (330)
T ss_pred hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHHhC
Confidence 358999999998887 7775 33455556 5678899999887655444344333 3334444443
No 164
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=31.67 E-value=1.4e+02 Score=20.93 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChHHH
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (189)
.++.+.+.+.+.-..+.+|+|....|.|++-.
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 36677778888878889999999999999964
No 165
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=31.26 E-value=49 Score=26.08 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEcCC-CCChHHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQR-GGVLVHCFA-GRSRSVTIVVAYLM 131 (189)
Q Consensus 94 l~~~~~~i~~~~~~~-~~VlVHC~~-G~~RS~~v~~ayL~ 131 (189)
++.+..+++.+.++| ++|+|||-. |.+-+|.-+..||-
T Consensus 45 ~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~ 84 (223)
T PF06415_consen 45 IDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLE 84 (223)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHH
Confidence 444555555555666 568888863 66656665555544
No 166
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.77 E-value=34 Score=28.51 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCChHH-----HHHHHHHHHhCC
Q 029680 106 RQRGGVLVHCFAGRSRSV-----TIVVAYLMKKHG 135 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~-----~v~~ayL~~~~g 135 (189)
.++.+||-||.+|- -.. ++...+.++..|
T Consensus 148 ~~~~~VLThCNaGa-LAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 148 PDGDTVLTHCNAGA-LATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred ccCCeEEeeecCCc-eeecCccchHHHHHHHHHCC
Confidence 35779999999883 222 455556666655
No 167
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=30.71 E-value=1.2e+02 Score=27.41 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=28.1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCC
Q 029680 84 DKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS 120 (189)
Q Consensus 84 d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~ 120 (189)
+.++|.....++.+++.|.+++.++++|+|+...-.+
T Consensus 45 ~l~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~D 81 (575)
T PRK11070 45 GLLPWQQLSGIEKAVELLYNALREGTRIIVVGDFDAD 81 (575)
T ss_pred hcCChHHhhCHHHHHHHHHHHHHCCCEEEEEEecCcc
Confidence 3344555566999999999999999999998664443
No 168
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=30.60 E-value=1.5e+02 Score=23.04 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..+.+.+.+.+.....+..+--|-+|--++.++.+.|-+..+|-+
T Consensus 102 aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr~ 146 (209)
T TIGR02584 102 AANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGRE 146 (209)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCCc
Confidence 345556666666545567777778886667777777777776644
No 169
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=30.60 E-value=1.8e+02 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLS 139 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~ 139 (189)
+..+++.+.+.+.+|++|++.-.++.||-+..-+.-+...+|.++.
T Consensus 43 I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 43 IAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 5666777777777887777643333333223333334555565543
No 170
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.58 E-value=47 Score=22.75 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=38.9
Q ss_pred CcEEEEcCCCCChHHHHHHHH-HHHhCC-------CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhcc
Q 029680 109 GGVLVHCFAGRSRSVTIVVAY-LMKKHG-------MSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEIQ 173 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ay-L~~~~g-------~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~ 173 (189)
++|++-|.+|.+-|-.+-=-- -....| ++..++-+++...- -+...|.....+.++++...+..
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~D-vvLlGPQv~y~~~~~~~~~~~~g 73 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNAD-VVLLGPQVRYMLKQLKEAAEEKG 73 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCC-EEEEChHHHHHHHHHHHHhcccC
Confidence 478999999997774422110 111123 34555556665332 36677888888888888876654
No 171
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=30.17 E-value=1.2e+02 Score=23.19 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCChH-HHHHHHHHHHhCCC
Q 029680 96 ECISFIDEAKRQRGGVLVHCFAGRSRS-VTIVVAYLMKKHGM 136 (189)
Q Consensus 96 ~~~~~i~~~~~~~~~VlVHC~~G~~RS-~~v~~ayL~~~~g~ 136 (189)
.+.+++.+....+++|+|-|-.|.|=. |.+++.+|.. .++
T Consensus 33 ~va~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~-~~v 73 (205)
T TIGR00197 33 AVAQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKG-FGV 73 (205)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHh-CCC
Confidence 334455444445679999999888776 5555555544 443
No 172
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=29.93 E-value=2.5e+02 Score=21.51 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC-----CChHHHHHHHHHHHhCCCCHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAG-----RSRSVTIVVAYLMKKHGMSLSQAMGHVK 146 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G-----~~RS~~v~~ayL~~~~g~~~~~A~~~v~ 146 (189)
...-...+.+..+.|.++.+-...+ .+......+..++...|+++++|++.+.
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 3444566677778888888877765 4455566667777778999999988764
No 173
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.84 E-value=43 Score=22.72 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred cEEEEcCCCCChHHHHHHHH---HHHhCCCC-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhc
Q 029680 110 GVLVHCFAGRSRSVTIVVAY---LMKKHGMS-------LSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEI 172 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~~ay---L~~~~g~~-------~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (189)
+|++.|.+| -|.++++-- .....|++ ..+.-..+... --+...|.....+.++++...+.
T Consensus 2 ~Ill~C~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~-Dvill~PQv~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDY-DLVILAPQMASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCC-CEEEEcChHHHHHHHHHHHhhhc
Confidence 589999777 454544433 23334543 33333332221 12566777777888888777554
No 174
>PRK05568 flavodoxin; Provisional
Probab=29.54 E-value=1.8e+02 Score=20.34 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=55.2
Q ss_pred HHHhCCCc-eEEEeCCCCCCC-CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCC-hHHHHHH
Q 029680 51 ALKSRNIT-HILTVANALAPA-HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS-RSVTIVV 127 (189)
Q Consensus 51 ~l~~~gi~-~VI~l~~~~~~~-~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~-RS~~v~~ 127 (189)
.+...|+. .++++....... ...+.-.+..|......+.. ..+..+++.+... .+++++.+.|..|.+ ..+.-.+
T Consensus 25 ~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~-~~~~~f~~~~~~~-~~~k~~~~f~t~G~~~~~~~~~~ 102 (142)
T PRK05568 25 GAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEE-GEMEPFVESISSL-VKGKKLVLFGSYGWGDGEWMRDW 102 (142)
T ss_pred HHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccc-hhHHHHHHHhhhh-hCCCEEEEEEccCCCCChHHHHH
Confidence 34455654 345655432211 13344555555543332110 1133333333222 357889999988864 3222223
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 029680 128 AYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQ 170 (189)
Q Consensus 128 ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 170 (189)
.-.+...|+..-..- + +-...|++.-++..++|.+.+.
T Consensus 103 ~~~l~~~g~~~~~~~--~---~~~~~p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 103 VERMEGYGANLVNEG--L---IVNNTPEGEGIEKCKALGEALA 140 (142)
T ss_pred HHHHHHCCCEEeCCc--E---EEecCCCHHHHHHHHHHHHHHH
Confidence 333344554422210 1 1123588889999999887763
No 175
>PHA03338 US22 family homolog; Provisional
Probab=29.49 E-value=57 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=28.4
Q ss_pred EEcCCCCChHHHHHHHH-HHHhCCCCHHHHHHHHHHhCCC
Q 029680 113 VHCFAGRSRSVTIVVAY-LMKKHGMSLSQAMGHVKSRRPQ 151 (189)
Q Consensus 113 VHC~~G~~RS~~v~~ay-L~~~~g~~~~~A~~~v~~~rp~ 151 (189)
|||.+|++-||.+.--| ++...+.+++....+|...+..
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 79999999988766555 5555577777777777766644
No 176
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.39 E-value=59 Score=20.94 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChHHHHH
Q 029680 110 GVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (189)
+|++-|.+|.|-|-.+.
T Consensus 2 ~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 2 KILVACGTGVATSTVVA 18 (89)
T ss_pred EEEEECCCCccHHHHHH
Confidence 78999999998775544
No 177
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=29.26 E-value=2.9e+02 Score=21.88 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhhccccc----ccccCcCCCCC
Q 029680 123 VTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAP--NSGFLLQLQELEKSLQEIQHIG----FTLTGLVTPTG 187 (189)
Q Consensus 123 ~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~--~~~~~~~L~~~~~~l~~~~~~~----~~~~~~~~~~~ 187 (189)
+.-.+.|.... -+++.++-+.++..+|-..+ +..|+..+.+|=+.+.....++ ...+=+++|.|
T Consensus 38 afe~vl~~Lf~-~lD~~~~~~~f~~~wP~~d~~q~~~fR~~~~~~L~~l~~~g~l~~~~~v~~s~l~~p~G 107 (247)
T PF14661_consen 38 AFEWVLHFLFT-ILDPEEAKKKFRPCWPPLDKKQSANFRKALFRWLKELKKNGVLGRFPKVRKSMLDSPGG 107 (247)
T ss_pred HHHHHHHHHHH-HcCHHHHHHHhhccCCCCCchhhHHHHHHHHHHHHHHHHcCCCCCCCceeeeeeecCCC
Confidence 44444444433 57899999999999998777 5589999999988888866663 33333566655
No 178
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.25 E-value=2.8e+02 Score=21.62 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=57.0
Q ss_pred HHHHHhCCCceEEEeCCCCC--CC-----------CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEc
Q 029680 49 KDALKSRNITHILTVANALA--PA-----------HPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHC 115 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~--~~-----------~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC 115 (189)
.+.+++.|+...+++..... .. ...+...+. +.|..-......+..++..+.+.... .++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 45668899999999953332 11 123333333 44553333333467777777766543 6888999
Q ss_pred CCCCChHHHHHHHHHHHh---------------CCCCHHHHHHHHHHhC
Q 029680 116 FAGRSRSVTIVVAYLMKK---------------HGMSLSQAMGHVKSRR 149 (189)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~---------------~g~~~~~A~~~v~~~r 149 (189)
++-.|-+.+-+++.+..= .+.+.++.+.+++...
T Consensus 198 Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 987776655444443221 1245666677776654
No 179
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=29.12 E-value=75 Score=26.28 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=46.1
Q ss_pred hhHHhHHHHHHHHHHhhhhhcccCCCCCeeecCCeEeCCccccCCHHHHHhCCCceEEEeCCCCCCC-------------
Q 029680 4 MDNAYRNQIAAILRVLNLTTCLREDRVPFEIEQGLFLGSIGAASNKDALKSRNITHILTVANALAPA------------- 70 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~------------- 70 (189)
|..+.......+...+...- ..-.+=++..+.=|+|+.-. ...+.|.+.|++.|+-++...-..
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~--~~~~fQS~~g~~~WL~P~~~-~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~r 281 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPE--WRLAFQSRFGPGEWLGPSTE-DVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYR 281 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSS--EEEEEES-SSSS-BSSSBHH-HHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHH
T ss_pred hHHHHHHHHHHHHHHcCCCc--eEEEEECCCCCCCCccccHH-HHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHH
Confidence 44455555555555442221 11222234555567777653 357889999999999887543111
Q ss_pred ---CCCCe-EEEEEEeccCCCCchHHHHHHHHHHHHH
Q 029680 71 ---HPNDF-VYKVIGVADKEDTNLSQYFDECISFIDE 103 (189)
Q Consensus 71 ---~~~~~-~~~~ip~~d~~~~~~~~~l~~~~~~i~~ 103 (189)
...|+ ++.++|..++.+. .++.+.+.+.+
T Consensus 282 e~~~~~G~~~~~~ip~lN~~~~----fi~~La~~v~~ 314 (316)
T PF00762_consen 282 ELAEEAGGEEFVRIPCLNDSPE----FIEALADLVRE 314 (316)
T ss_dssp HHHHHHTCCEEEE---STT-HH----HHHHHHHHHHH
T ss_pred HHHHHcCCceEEEeCCCCCCHH----HHHHHHHHHHh
Confidence 13355 8888887755432 34444444444
No 180
>PRK02947 hypothetical protein; Provisional
Probab=29.08 E-value=1.3e+02 Score=23.85 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHh
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKK 133 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (189)
+.++++++.+.+.+.++++|++. |.|-|+.++ .++..+
T Consensus 24 e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA-~~~~~r 61 (246)
T PRK02947 24 EAIEKAADLIADSIRNGGLIYVF---GTGHSHILA-EEVFYR 61 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH-HHhccc
Confidence 45888889999888889899976 555665554 344433
No 181
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=29.07 E-value=75 Score=21.61 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHh
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMKKHGMS-LSQAMGHVKSR 148 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~-~~~A~~~v~~~ 148 (189)
.++|+=||-.| .-++-||+.....+ -.||+..-...
T Consensus 24 ~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~L 60 (99)
T cd04445 24 DKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASSL 60 (99)
T ss_pred hhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHHH
Confidence 46999999998 45778999888775 88888766554
No 182
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=28.94 E-value=1.2e+02 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHHH-HhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 97 CISFIDEA-KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 97 ~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+.+++.+. +..+.+|+|+|..|. ++++. +++++...|.+
T Consensus 75 ~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~~-~~~~l~~~G~~ 114 (281)
T PRK11493 75 FAVAMRELGVNQDKHLVVYDEGNL-FSAPR-AWWMLRTFGVE 114 (281)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC-chHHH-HHHHHHHhcCC
Confidence 33344443 345679999998774 44332 33444555654
No 183
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=28.48 E-value=1.4e+02 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhhc
Q 029680 139 SQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQEI 172 (189)
Q Consensus 139 ~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 172 (189)
-..++.+.+.+| +.....++..|.+|...+-..
T Consensus 72 l~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 72 LKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC
Confidence 344566777788 888999999999998877543
No 184
>PRK10425 DNase TatD; Provisional
Probab=28.31 E-value=1.1e+02 Score=24.41 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHH-------HHHhCCCCHHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY-------LMKKHGMSLSQAMGHVKS 147 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay-------L~~~~g~~~~~A~~~v~~ 147 (189)
.+-+-.+++-+.+.+.+|.|||.......--+.--+ +++.+.-+.+.|..++..
T Consensus 107 ~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~ 167 (258)
T PRK10425 107 ERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGTREEMQACLAR 167 (258)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCCHHHHHHHHHC
Confidence 344555666666668899999996654433322222 111112367777776664
No 185
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=28.25 E-value=36 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.6
Q ss_pred EEEEcCCCCChHHH
Q 029680 111 VLVHCFAGRSRSVT 124 (189)
Q Consensus 111 VlVHC~~G~~RS~~ 124 (189)
||+-|.+...||++
T Consensus 1 vLFVC~~N~cRSpm 14 (140)
T smart00226 1 ILFVCTGNICRSPM 14 (140)
T ss_pred CEEEeCChhhhHHH
Confidence 45667777777765
No 186
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=28.21 E-value=49 Score=20.39 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.9
Q ss_pred cEEEEcCCCCChHHHHH
Q 029680 110 GVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (189)
+|++-|..|.+-|..+.
T Consensus 1 ~il~vc~~G~~~s~~l~ 17 (84)
T cd00133 1 KILVVCGSGIGSSSMLA 17 (84)
T ss_pred CEEEECCCcHhHHHHHH
Confidence 57899999987775544
No 187
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=27.97 E-value=1.1e+02 Score=24.71 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 126 VVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 126 ~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
++..||...|++.++|++.+....
T Consensus 231 ~V~vl~~~~g~s~~eA~~~~~~~~ 254 (303)
T cd00687 231 LVKVLAEEHGLSLEEAISVVRDMH 254 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345678888999999999997763
No 188
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=27.74 E-value=2.1e+02 Score=22.22 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHHHHHh----cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 029680 88 TNLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAM 142 (189)
Q Consensus 88 ~~~~~~l~~~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~ 142 (189)
++.......+..++++.+. .++.|+|-|.+|.-|+ .+....|++.++..
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~------ll~~~~~~~~~~~~ 202 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA------LTKYIENISDEDIM 202 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH------HHHHHhCCCHHHHH
Confidence 3445555666666666442 3678999999987554 22333477766543
No 189
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=27.59 E-value=1.2e+02 Score=18.37 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 125 IVVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 125 v~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
.|+.-+..+.|++..+|+..+++..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 4666678888999999999998665
No 190
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=27.47 E-value=1.6e+02 Score=21.40 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHHHHhc--CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 89 NLSQYFDECISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
+..+....+..++++.... ++.|+|-+.+|. +.+++....|.++++...
T Consensus 116 s~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~------i~~l~~~~~~~~~~~~~~ 166 (177)
T TIGR03162 116 SFADFYQRVSEFLEELLKAHEGDNVLIVTHGGV------IRALLAHLLGLPLEQWWS 166 (177)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHH------HHHHHHHHhCCCHHHHhc
Confidence 3445555666666665543 567888777764 333344455788776554
No 191
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.44 E-value=43 Score=23.80 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHH-hcCCcEEEEcCCCCChH
Q 029680 93 YFDECISFIDEAK-RQRGGVLVHCFAGRSRS 122 (189)
Q Consensus 93 ~l~~~~~~i~~~~-~~~~~VlVHC~~G~~RS 122 (189)
.+..+++.+.... ...++++|||++..+-.
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHH
Confidence 3555666555541 12469999999877543
No 192
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.13 E-value=1.2e+02 Score=24.75 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
+.+..+++.+.+.+.+|++|++.-.++.+|-+..-+.-+...++.+
T Consensus 42 ~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~ 87 (296)
T PRK12570 42 PQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVS 87 (296)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCC
Confidence 3466677777778888888776433333333333333344444444
No 193
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=27.10 E-value=1.9e+02 Score=21.81 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHh-------cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 029680 89 NLSQYFDECISFIDEAKR-------QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAM 142 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~~-------~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~ 142 (189)
+.......+..++++..+ .++.|+|-|.+|.-|+ .+....|.++++..
T Consensus 118 s~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~------ll~~~lg~~~~~~~ 172 (204)
T TIGR03848 118 SLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKS------VLADALGMHLDLFQ 172 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHH------HHHHHhCCCHHHhh
Confidence 344444555555655442 2457899899887543 23344477766544
No 194
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.09 E-value=1.4e+02 Score=22.59 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHH
Q 029680 91 SQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 91 ~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (189)
.+.+..+.+.|-+++.+|+|||+ |. .|+|.+
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~-cG--NGgSaa 54 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLA-CG--NGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-EC--CCcchh
Confidence 34577788888888889999997 43 445654
No 195
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=27.06 E-value=78 Score=20.93 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChHHH
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (189)
.+++..++..+++|+|++++|..-.|.
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~ 30 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGR 30 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEE
Confidence 356777777788999999999765554
No 196
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.89 E-value=3.3e+02 Score=21.77 Aligned_cols=98 Identities=7% Similarity=0.044 Sum_probs=57.7
Q ss_pred HHHHHhCCCceEEEeCCCCCCC--C---------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 49 KDALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~--~---------~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
.+..++.|+...+++....... + ..+. ..+-+.|..-......+...+..+.+....+-++-+||++
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~--~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKP--DVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCC--CEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 4556778888888876433211 0 2233 3455557643333334666777777665434689999999
Q ss_pred CCChHHHHHHHHHHHh---------------CCCCHHHHHHHHHHh
Q 029680 118 GRSRSVTIVVAYLMKK---------------HGMSLSQAMGHVKSR 148 (189)
Q Consensus 118 G~~RS~~v~~ayL~~~---------------~g~~~~~A~~~v~~~ 148 (189)
-.|-+.+-+++.+-.= .+.+.++.+..++..
T Consensus 193 ~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 193 NLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHh
Confidence 8887766655554321 123566667777665
No 197
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=26.71 E-value=97 Score=26.36 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSL 169 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l 169 (189)
.+++|.|-|+.|. +-+.|..++|+.-|....++ .+.=|..|....
T Consensus 376 ~~~~I~ViCrrGN-----------------dSQ~Av~~Lre~~~~~~vrD-vigGl~~w~~~v 420 (427)
T KOG2017|consen 376 ESKDIFVICRRGN-----------------DSQRAVRILREKFPDSSVRD-VIGGLKAWAAKV 420 (427)
T ss_pred cCCCEEEEeCCCC-----------------chHHHHHHHHhhCCchhhhh-hhhHHHHHHHhc
Confidence 3578999999986 44556666665554333322 333444554443
No 198
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.12 E-value=2.8e+02 Score=20.70 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=47.1
Q ss_pred HHHHhCCCceEEEeCCCCCCC------CCCCeEEEEEEec----cCCCCchHHHHHHHHHHHHHHHhcCCcEE--EEcCC
Q 029680 50 DALKSRNITHILTVANALAPA------HPNDFVYKVIGVA----DKEDTNLSQYFDECISFIDEAKRQRGGVL--VHCFA 117 (189)
Q Consensus 50 ~~l~~~gi~~VI~l~~~~~~~------~~~~~~~~~ip~~----d~~~~~~~~~l~~~~~~i~~~~~~~~~Vl--VHC~~ 117 (189)
+..+..||+++|-.+...... ...+++...+-.. ..+...+.+.++ +...+.|.+|+ -|--.
T Consensus 21 erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~------~~L~erGa~v~~~sHalS 94 (186)
T COG1751 21 ERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVR------KELKERGAKVLTQSHALS 94 (186)
T ss_pred HHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHH------HHHHHcCceeeeehhhhh
Confidence 445668999999998766433 2334444443332 222222222222 23345677777 46678
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHH
Q 029680 118 GRSRSVTIVVAYLMKKHGMSLSQAMGH 144 (189)
Q Consensus 118 G~~RS~~v~~ayL~~~~g~~~~~A~~~ 144 (189)
|+.||-+ -+..|+++-++++.
T Consensus 95 g~eRsis------~kfGG~~p~eiiAe 115 (186)
T COG1751 95 GVERSIS------RKFGGYSPLEIIAE 115 (186)
T ss_pred cchhhhh------hhcCCcchHHHHHH
Confidence 8888855 34456777776643
No 199
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=26.06 E-value=1.1e+02 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (189)
.+-+.+.++-+.+-+.+|.|||....++.--++
T Consensus 110 ~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il 142 (255)
T PF01026_consen 110 EEVFERQLELAKELNLPVSIHCRKAHEELLEIL 142 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHH
Confidence 445555666666667899999998544443333
No 200
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.06 E-value=70 Score=23.05 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~ 126 (189)
++||+=|.+...||++.-
T Consensus 3 ~~ILfVC~gN~cRSpmAE 20 (144)
T PRK11391 3 NSILVVCTGNICRSPIGE 20 (144)
T ss_pred CeEEEEcCCcHhHHHHHH
Confidence 489999999999998744
No 201
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.90 E-value=1e+02 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHH---HHHHHhCCCC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVV---AYLMKKHGMS 137 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~---ayL~~~~g~~ 137 (189)
.+.++++.+.+.+.+|++|++ |. .|-||.++. ..+...+|.+
T Consensus 34 ~I~~av~~~~~~l~~ggrl~~-~G--aGtSg~la~~da~e~~~tfg~~ 78 (257)
T cd05007 34 QIARAVDAAAERLRAGGRLIY-VG--AGTSGRLGVLDASELPPTFGTP 78 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEE-Ec--CcHHHHHHHHHHHhccccccCC
Confidence 466777778888888888665 33 345655553 4455555653
No 202
>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]
Probab=25.89 E-value=2.4e+02 Score=20.36 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEc-CCCCChHHHHHHHHHHHhCCC----CHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 029680 94 FDECISFIDEAKRQRGGVLVHC-FAGRSRSVTIVVAYLMKKHGM----SLSQAMGHVKSRR-PQAAPNSGFLLQLQELEK 167 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~~ayL~~~~g~----~~~~A~~~v~~~r-p~~~~~~~~~~~L~~~~~ 167 (189)
|+.+...+...++ + |+ ..|.-|++..++.......|. +.+++.+.+...- .+-..-..+..+++.+..
T Consensus 54 felAA~~~~~l~k-n-----H~F~dgNKRtal~a~~~FL~lNGy~l~a~~d~~~~~~~~la~~~E~d~~~~~~w~R~~~~ 127 (132)
T COG3654 54 FELAAAYFVALIK-N-----HAFADGNKRTALAAALLFLLLNGYELTASQDELVDMIVDLARAGETDEAQLAQWLREHDS 127 (132)
T ss_pred HHHHHHHHHHHHh-c-----CCCCCccHHHHHHHHHHHHHhCCeeeeccHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 4444444444443 2 33 367789988777777777774 5666666665554 322223333444444433
No 203
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=25.80 E-value=2e+02 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHHHh
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLMKK 133 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~~~ 133 (189)
.+.+|+|+|..| .+| ..++..|...
T Consensus 48 ~~~~vVv~c~~g-~~a-~~aa~~L~~~ 72 (145)
T cd01535 48 AAERYVLTCGSS-LLA-RFAAADLAAL 72 (145)
T ss_pred CCCCEEEEeCCC-hHH-HHHHHHHHHc
Confidence 457999999986 344 4444555433
No 204
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.68 E-value=1.6e+02 Score=20.84 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHH
Q 029680 92 QYFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVV 127 (189)
Q Consensus 92 ~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 127 (189)
+.+.++.+.+.+.+.+|++|++. -+ |-|++++.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~-G~--G~S~~~a~ 51 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVC-GN--GHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-ES--THHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-cC--chhhhHHH
Confidence 44788899999999999888874 44 35555443
No 205
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=25.60 E-value=2.1e+02 Score=22.16 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHh----cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 029680 89 NLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAM 142 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~ 142 (189)
+.....+.+..++++.+. .++.|+|-|.+|.-|+ .+....|.+..+..
T Consensus 150 s~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~------ll~~~l~~~~~~~~ 201 (227)
T PRK14118 150 NLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA------LAKHIEGISDADIM 201 (227)
T ss_pred CHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH------HHHHHhCCCHHHHh
Confidence 344555666666665442 3578999999886544 22333477776543
No 206
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.82 E-value=2.4e+02 Score=21.57 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=20.6
Q ss_pred hcCCcEEEEcCCCCChHHH-HHHHHHHHhCC
Q 029680 106 RQRGGVLVHCFAGRSRSVT-IVVAYLMKKHG 135 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~-v~~ayL~~~~g 135 (189)
...+.|.|+|..|.|-|.+ +.+++-+.-.|
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G 50 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHG 50 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCC
Confidence 3567999999999999955 44444444333
No 207
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.61 E-value=79 Score=20.18 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChHHHHH
Q 029680 110 GVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 110 ~VlVHC~~G~~RS~~v~ 126 (189)
+|+|-|.+|.|-|..+.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 48899999998775544
No 208
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.50 E-value=67 Score=25.65 Aligned_cols=75 Identities=13% Similarity=0.297 Sum_probs=42.7
Q ss_pred CeEeCCccccCC-HHHHHhCCCceEEEeCCCCCCC---------CCCCeEEEEEEeccCCC---Cch--HHHHHHHHHHH
Q 029680 37 GLFLGSIGAASN-KDALKSRNITHILTVANALAPA---------HPNDFVYKVIGVADKED---TNL--SQYFDECISFI 101 (189)
Q Consensus 37 ~Ly~G~~~~~~~-~~~l~~~gi~~VI~l~~~~~~~---------~~~~~~~~~ip~~d~~~---~~~--~~~l~~~~~~i 101 (189)
.+..|...+... .+++++++|+.|||.+-+.-.. -..++-|+++-=..... .+. ...++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 478888844443 5777889999999999654221 25566666654433321 111 22355555555
Q ss_pred HHHHhcCCcEEE
Q 029680 102 DEAKRQRGGVLV 113 (189)
Q Consensus 102 ~~~~~~~~~VlV 113 (189)
.+. .+++|+.
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 332 2267765
No 209
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=24.39 E-value=1e+02 Score=22.56 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=25.6
Q ss_pred CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCC
Q 029680 72 PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRS 120 (189)
Q Consensus 72 ~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~ 120 (189)
.-+.-++..|+-....+.... .|+++..-+|++|...|..|-+
T Consensus 73 ~YD~I~lG~PvW~~~~~~pv~------tFL~~~~~~gK~v~~F~T~ggs 115 (156)
T PF12682_consen 73 DYDTIFLGTPVWWGTPPPPVR------TFLEQYDFSGKTVIPFCTSGGS 115 (156)
T ss_dssp G-SEEEEEEEEETTEE-CHHH------HHHHCTTTTTSEEEEEEE-SS-
T ss_pred cCCEEEEechHHcCCCCHHHH------HHHHhcCCCCCcEEEEEeeCCC
Confidence 445678888887665443322 3444444568899999988743
No 210
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.26 E-value=85 Score=25.87 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=12.2
Q ss_pred HHHhcCCcEEEEcCCCC
Q 029680 103 EAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 103 ~~~~~~~~VlVHC~~G~ 119 (189)
+.+..|..||.||.+|.
T Consensus 114 ~~I~~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 114 KLIKDGDTVLTHCNAGA 130 (303)
T ss_pred HHccCCCEEEEecCCcc
Confidence 33345778999999853
No 211
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=24.00 E-value=1.2e+02 Score=23.87 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChHHHHHHHH
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFAGRSRSVTIVVAY 129 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 129 (189)
.++++.+.+.......+.|.||-.+|+|-|..+..++
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 3556666666544456788899999999997765544
No 212
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=23.95 E-value=53 Score=23.69 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChHHHH
Q 029680 109 GGVLVHCFAGRSRSVTI 125 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v 125 (189)
.+||+-|.+...||++.
T Consensus 3 ~kVLFVC~gN~cRSpmA 19 (139)
T COG0394 3 MKVLFVCTGNICRSPMA 19 (139)
T ss_pred ceEEEEcCCCcccCHHH
Confidence 58999999999999873
No 213
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=23.79 E-value=1.5e+02 Score=27.07 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=19.6
Q ss_pred hcCCcEEEEcCCCCChHHHHHHHHHHHhCCC
Q 029680 106 RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGM 136 (189)
Q Consensus 106 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~ 136 (189)
..+.+|+|.|..|..+++ -++|++...|.
T Consensus 79 ~~d~~VVvYd~~g~~~A~--R~~w~L~~~G~ 107 (610)
T PRK09629 79 NPDAVYVVYDDEGGGWAG--RFIWLLDVIGH 107 (610)
T ss_pred CCCCEEEEECCCCCchHH--HHHHHHHHcCC
Confidence 456799999998865554 33555566664
No 214
>PRK10812 putative DNAse; Provisional
Probab=23.74 E-value=1.4e+02 Score=23.85 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCCh
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSR 121 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~R 121 (189)
.+-+-..++-+.+.+.+|.|||..+...
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~~~ 137 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDARAD 137 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH
Confidence 3444555555666688999999887643
No 215
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.39 E-value=3.1e+02 Score=23.63 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChH---HHHHHHHHHHhCCCCHHHHHHHHH
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRS---VTIVVAYLMKKHGMSLSQAMGHVK 146 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS---~~v~~ayL~~~~g~~~~~A~~~v~ 146 (189)
..-+...++.|-+|.+.+-.+.+.+ -.+.+.+++.. ||++.||+..+.
T Consensus 296 ~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~-gmtp~EaL~a~T 346 (406)
T COG1228 296 YKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRL-GMTPEEALKAAT 346 (406)
T ss_pred chhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3346777788999999999999884 23444555554 699999998764
No 216
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.34 E-value=5e+02 Score=22.66 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=56.6
Q ss_pred eEeCCccccCCHHHHHhCCCceEEEeCCCCCCCCCCC--eEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEc
Q 029680 38 LFLGSIGAASNKDALKSRNITHILTVANALAPAHPND--FVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHC 115 (189)
Q Consensus 38 Ly~G~~~~~~~~~~l~~~gi~~VI~l~~~~~~~~~~~--~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC 115 (189)
.|+=+....+....|.+...+.++.+..+........ -.|+.+|..|.+.. + +.++++ ..|+.+.|+|
T Consensus 238 t~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~y-----L---V~ll~e--~~g~s~iVF~ 307 (476)
T KOG0330|consen 238 TFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTY-----L---VYLLNE--LAGNSVIVFC 307 (476)
T ss_pred EEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchh-----H---HHHHHh--hcCCcEEEEE
Confidence 5666666667888888888888888876554333222 37788888776554 2 222232 3468999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCC
Q 029680 116 FAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 116 ~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
..-. .+--++++....|+.
T Consensus 308 ~t~~---tt~~la~~L~~lg~~ 326 (476)
T KOG0330|consen 308 NTCN---TTRFLALLLRNLGFQ 326 (476)
T ss_pred eccc---hHHHHHHHHHhcCcc
Confidence 8753 344566777766654
No 217
>PRK06934 flavodoxin; Provisional
Probab=23.27 E-value=1.8e+02 Score=22.82 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=25.3
Q ss_pred CeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 74 DFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 74 ~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
+.-++.+|+-....|.. +..|++++.-.|++|...|+.|-
T Consensus 131 D~I~IG~PIWwg~~P~~------V~tFLe~~d~~GK~I~pF~T~gg 170 (221)
T PRK06934 131 DQIFIGYPIWWYKMPMV------MYSFFEQHDFSGKTLIPFTTHGG 170 (221)
T ss_pred CEEEEEcchhhccccHH------HHHHHHhcCCCCCEEEEEEecCC
Confidence 34566666665544433 23455666667899999999863
No 218
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=23.07 E-value=2.5e+02 Score=21.90 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHHHHH----hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 88 TNLSQYFDECISFIDEAK----RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 88 ~~~~~~l~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
++..+....+..++++.+ ..++.|+|-|++|.-| +.+....+++.++...
T Consensus 137 ES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir------~ll~~l~~~~~~~~~~ 190 (236)
T PTZ00123 137 ECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLR------ALVKYLDKMSEEDILE 190 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHH------HHHHHHhCCCHHHHhh
Confidence 344555556666655432 2467899988887644 3334445778776653
No 219
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=83 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChH
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRS 122 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS 122 (189)
..........++.|++||++-.++-
T Consensus 81 s~vaa~~~~rpg~iv~HcSga~~~~ 105 (289)
T COG5495 81 SGVAATSLNRPGTIVAHCSGANGSG 105 (289)
T ss_pred HHHHHhcccCCCeEEEEccCCCchh
Confidence 4455566677899999999766543
No 220
>PRK13530 arsenate reductase; Provisional
Probab=22.96 E-value=1.2e+02 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIVVAYLMK 132 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~~ayL~~ 132 (189)
++||+=|.+...||+..- +++-.
T Consensus 4 ~~vLFvC~~N~cRS~mAE-al~~~ 26 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAE-GWGKQ 26 (133)
T ss_pred CEEEEEcCCchhHHHHHH-HHHHH
Confidence 589999999999997733 44433
No 221
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=22.94 E-value=2.4e+02 Score=19.85 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCCChHHHHHHHHHH
Q 029680 107 QRGGVLVHCFAGRSRSVTIVVAYLM 131 (189)
Q Consensus 107 ~~~~VlVHC~~G~~RS~~v~~ayL~ 131 (189)
+|+.++|....|.|.|-+...+.+.
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHh
Confidence 5778999999999999887765543
No 222
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=22.89 E-value=2.3e+02 Score=21.88 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHHHHHHh----cCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 029680 88 TNLSQYFDECISFIDEAKR----QRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAM 142 (189)
Q Consensus 88 ~~~~~~l~~~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~ 142 (189)
++..+....+..++++.+. .++.|+|-|.+|.-|+ .+....|.+.++..
T Consensus 150 ES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~------l~~~~~~~~~~~~~ 202 (228)
T PRK14119 150 ESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRA------LIKYLEDVSDEDII 202 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHH------HHHHHhCCCHHHHh
Confidence 3455556666666665432 3578999999987554 22333477766543
No 223
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.82 E-value=2e+02 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChH-HHHHHHHHHHhCCC
Q 029680 108 RGGVLVHCFAGRSRS-VTIVVAYLMKKHGM 136 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS-~~v~~ayL~~~~g~ 136 (189)
+++|+|-|..|.|=. |.+++.+| ...|+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L-~~~G~ 87 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHL-HHFGY 87 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH-HHCCC
Confidence 368999999999888 44555555 44465
No 224
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=22.77 E-value=2.4e+02 Score=21.69 Aligned_cols=29 Identities=24% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCChH
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRSRS 122 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~RS 122 (189)
+..+.+.++.+...|-++.+||..+.+.+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~i~ 210 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESSIG 210 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 44455666666677889999997654433
No 225
>PRK10126 tyrosine phosphatase; Provisional
Probab=22.74 E-value=80 Score=22.74 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChHHHHH
Q 029680 109 GGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 109 ~~VlVHC~~G~~RS~~v~ 126 (189)
.+||+=|.+...||++.-
T Consensus 3 ~~iLFVC~gN~cRSpmAE 20 (147)
T PRK10126 3 NNILVVCVGNICRSPTAE 20 (147)
T ss_pred CeEEEEcCCcHhHHHHHH
Confidence 489999999999998844
No 226
>PRK13462 acid phosphatase; Provisional
Probab=22.73 E-value=2.9e+02 Score=20.93 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=28.3
Q ss_pred CchHHHHHHHHHHHHHHHhc--CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHH
Q 029680 88 TNLSQYFDECISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQ 140 (189)
Q Consensus 88 ~~~~~~l~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~ 140 (189)
++..+....+.+++++..+. ++.|+|-|.+|.-|+ .+....|+++..
T Consensus 117 ES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~------ll~~~l~~~~~~ 165 (203)
T PRK13462 117 ESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRA------VITRWVELPLAE 165 (203)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH------HHHHHhCCCHHH
Confidence 34455555666666665442 568999999887553 333445677654
No 227
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=22.72 E-value=1e+02 Score=28.03 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH---hCCCCHHHHHHHHHH
Q 029680 108 RGGVLVHCFAGRSRSVTIVVAYLMK---KHGMSLSQAMGHVKS 147 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS~~v~~ayL~~---~~g~~~~~A~~~v~~ 147 (189)
-.+.+|||..+. ++++.++||. ..+++.++|++.++.
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 368999999986 4667777653 347888888876654
No 228
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.51 E-value=1.8e+02 Score=17.04 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 029680 118 GRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRR 149 (189)
Q Consensus 118 G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~r 149 (189)
|.+|...-++.-|+. .|+.++.--+.|++.|
T Consensus 18 gLd~etL~ici~L~e-~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRETLSICIELCE-NGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHHHHHHHHHHHH-CCCCHHHHHHHHHHhC
Confidence 789986544444554 4999875556666554
No 229
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=22.46 E-value=88 Score=17.59 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=25.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 029680 127 VAYLMKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQE 164 (189)
Q Consensus 127 ~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 164 (189)
-.||...-+-.+.+|+..+-..|| ..|-..+-.+|.+
T Consensus 3 r~YL~~~v~p~L~~gL~~l~~~rP-~DPi~~La~~Ll~ 39 (42)
T PF05186_consen 3 RQYLKETVGPVLTEGLAELAKERP-EDPIEFLAEYLLK 39 (42)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH---SSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCC-CChHHHHHHHHHH
Confidence 357777777778999999999998 5665555555544
No 230
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=22.41 E-value=2.7e+02 Score=19.15 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHhCCCceEEEeCCCCC---CCC----------CCCeEEEEEEe
Q 029680 50 DALKSRNITHILTVANALA---PAH----------PNDFVYKVIGV 82 (189)
Q Consensus 50 ~~l~~~gi~~VI~l~~~~~---~~~----------~~~~~~~~ip~ 82 (189)
..|+..||+.+||++.... +.+ ..|+.|.++|-
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 4688899999999875332 111 56788888875
No 231
>PRK01295 phosphoglyceromutase; Provisional
Probab=22.34 E-value=2.7e+02 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHH----hcCCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 89 NLSQYFDECISFIDEAK----RQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
+..+....+..++.+.+ ..++.|+|-|.+|.-|+ .+....++++++...
T Consensus 127 S~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ir~------l~~~~l~~~~~~~~~ 179 (206)
T PRK01295 127 SLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRA------LVMVLDGLTPEQILK 179 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHHHHH------HHHHHhCCCHHHHhh
Confidence 34444555555433222 24578999888876443 344555788765543
No 232
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.18 E-value=2.7e+02 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChH-HHHHHHHHHHhCCCC
Q 029680 108 RGGVLVHCFAGRSRS-VTIVVAYLMKKHGMS 137 (189)
Q Consensus 108 ~~~VlVHC~~G~~RS-~~v~~ayL~~~~g~~ 137 (189)
+++|+|-|-.|.|=. |.+++.+|. ..|+.
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~-~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLA-HFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHH-HCCCe
Confidence 368999999998877 555555554 44653
No 233
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.18 E-value=2.5e+02 Score=18.74 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred HHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Q 029680 131 MKKHGMSLSQAMGHVKSRRPQAAPNSGFLLQLQELEKSLQE 171 (189)
Q Consensus 131 ~~~~g~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 171 (189)
....|+++.++..++........+.......|.+....+..
T Consensus 54 lr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (99)
T cd04765 54 LYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLD 94 (99)
T ss_pred HHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHH
Confidence 34569999999999999888888888888888888776643
No 234
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.03 E-value=1.1e+02 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChH--HHHHHHHHHHhCCCCHHH
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRS--VTIVVAYLMKKHGMSLSQ 140 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS--~~v~~ayL~~~~g~~~~~ 140 (189)
.+=|.+++++|--|+|. ||+ +++.++.+++.+||+.++
T Consensus 150 a~pI~~AL~~GADIVI~-----GR~~D~Al~~a~~~~~~GW~~~d 189 (362)
T PF07287_consen 150 AEPIVEALEAGADIVIT-----GRVADPALFAAPAIHEFGWSEDD 189 (362)
T ss_pred hHHHHHHHHcCCCEEEe-----CcccchHHHHhHHHHHcCCCccc
Confidence 34566777778788875 666 788899999999997544
No 235
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.56 E-value=1.3e+02 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
++.+++++.+... ..-+|.||..+.
T Consensus 128 I~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 128 IERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred HHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 7778888755433 458999999764
No 236
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.56 E-value=3.6e+02 Score=20.37 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=39.6
Q ss_pred CCHHHHHhCCCceEE-EeCCCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCCCCChHHH
Q 029680 47 SNKDALKSRNITHIL-TVANALAPAHPNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFAGRSRSVT 124 (189)
Q Consensus 47 ~~~~~l~~~gi~~VI-~l~~~~~~~~~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 124 (189)
-+.+.|++.|++.|| |+.+.. +|+.+.. . -.++.+++.+....|-+++|-+.+--.|-+.
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTL------------v~wd~~~---~---tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~ 78 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTL------------VPWDNPD---A---TPELRAWLAELKEAGIKVVVVSNNKESRVAR 78 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCce------------ecccCCC---C---CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh
Confidence 478899999999988 554432 2222211 1 1335677778888888999988876666654
No 237
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.35 E-value=4.2e+02 Score=20.97 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=44.4
Q ss_pred HHHHHhCCCceEEEeCCCCCCC--C---------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 49 KDALKSRNITHILTVANALAPA--H---------PNDFVYKVIGVADKEDTNLSQYFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 49 ~~~l~~~gi~~VI~l~~~~~~~--~---------~~~~~~~~ip~~d~~~~~~~~~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
.+..++.|....+++....... + ..+.. .+-+.|..-.-....+..+++.+.+.... .++-+||++
T Consensus 118 i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn 194 (263)
T cd07943 118 IGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD--CVYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHN 194 (263)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecC
Confidence 3455667777777774322111 0 22222 34455654333333466666666665432 389999999
Q ss_pred CCChHHHHHHHHH
Q 029680 118 GRSRSVTIVVAYL 130 (189)
Q Consensus 118 G~~RS~~v~~ayL 130 (189)
-.|-+.+-+++.+
T Consensus 195 ~~GlA~AN~laAi 207 (263)
T cd07943 195 NLGLAVANSLAAV 207 (263)
T ss_pred CcchHHHHHHHHH
Confidence 8888766555554
No 238
>PTZ00323 NAD+ synthase; Provisional
Probab=20.99 E-value=3.6e+02 Score=22.15 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHHHHHHhc--CCcEEEEcCCCCChHHHHHHHHHHH
Q 029680 88 TNLSQYFDECISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMK 132 (189)
Q Consensus 88 ~~~~~~l~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~ 132 (189)
-+....++..++++.+.++. .++++|=.++|++=|.+.++|+.+.
T Consensus 24 ~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~al 70 (294)
T PTZ00323 24 FNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAM 70 (294)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 34455677778888887765 5799999999999888888888664
No 239
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.86 E-value=3e+02 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=12.3
Q ss_pred HHHHhcCCcEEEEcCCC
Q 029680 102 DEAKRQRGGVLVHCFAG 118 (189)
Q Consensus 102 ~~~~~~~~~VlVHC~~G 118 (189)
.+.+..|..||.||.+|
T Consensus 104 ~~~I~~g~~ILTh~~S~ 120 (275)
T PRK08335 104 SELIDDGDVIITHSFSS 120 (275)
T ss_pred HHHcCCCCEEEEECCcH
Confidence 34444677899999884
No 240
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.75 E-value=97 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=23.7
Q ss_pred CeEeCCccccCCHHHHHhCCCceEEEeCC
Q 029680 37 GLFLGSIGAASNKDALKSRNITHILTVAN 65 (189)
Q Consensus 37 ~Ly~G~~~~~~~~~~l~~~gi~~VI~l~~ 65 (189)
-+++|+.....+.+.++++|+..++....
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 38888877667788999999999997764
No 241
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=20.73 E-value=4e+02 Score=20.96 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCC
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGRS 120 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~~ 120 (189)
-..+++.++....+|+.|..|-..-..
T Consensus 54 ~~~f~~~L~~~~~~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 54 NPEFVEYLRYLQARGGEIVLHGYTHQY 80 (243)
T ss_pred hHHHHHHHHHHHhcCCEEEEEecceec
Confidence 456788888888899999999764433
No 242
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=1.6e+02 Score=20.01 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 95 DECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
..++++|.+.....++|+.|=++|-
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCCc
Confidence 4567888888888889999966653
No 243
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=20.55 E-value=3.5e+02 Score=23.35 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=36.8
Q ss_pred EEEcCCCCChHHHHHHH---------------------------------HHHHhCCCCHHHHHHHHHHhCCCCCCCHHH
Q 029680 112 LVHCFAGRSRSVTIVVA---------------------------------YLMKKHGMSLSQAMGHVKSRRPQAAPNSGF 158 (189)
Q Consensus 112 lVHC~~G~~RS~~v~~a---------------------------------yL~~~~g~~~~~A~~~v~~~rp~~~~~~~~ 158 (189)
|=.|.+-++|-++-++. .++...-+++-+.+++...+. ++-....+
T Consensus 324 LDfFDasInRIaAwviG~rn~qKAll~ALL~p~~~L~~~e~~gd~t~rlAl~Ee~K~~P~gaVwd~yC~~~-~vP~~~~w 402 (417)
T PF06134_consen 324 LDFFDASINRIAAWVIGTRNMQKALLKALLEPTEALKEAEDEGDFTERLALLEEFKSLPFGAVWDYYCERN-GVPVGEDW 402 (417)
T ss_dssp E----TSS-HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCTT-HHHHHHHHHHHCCSSHHHHHHHHHHHT-TS-STTTH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHc-CCCCcHHH
Confidence 34799999999884443 233334456666667776666 57778899
Q ss_pred HHHHHHHHHHHhhc
Q 029680 159 LLQLQELEKSLQEI 172 (189)
Q Consensus 159 ~~~L~~~~~~l~~~ 172 (189)
+..+.+||+.+..+
T Consensus 403 ~~~v~~YE~~Vl~k 416 (417)
T PF06134_consen 403 LDEVKQYEKEVLSK 416 (417)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886543
No 244
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=20.54 E-value=2.9e+02 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHHHhc--CCcEEEEcCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 029680 89 NLSQYFDECISFIDEAKRQ--RGGVLVHCFAGRSRSVTIVVAYLMKKHGMSLSQAMG 143 (189)
Q Consensus 89 ~~~~~l~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~~~~A~~ 143 (189)
+..+....+..++++.... ++.|+|-+.+|. +-++++...|.+..+...
T Consensus 120 s~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~------i~~l~~~~~~~~~~~~~~ 170 (199)
T PRK15004 120 GFQAFSQRVERFIARLSAFQHYQNLLIVSHQGV------LSLLIARLLGMPAEAMWH 170 (199)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHH------HHHHHHHHhCCCHHHHhc
Confidence 4445455566666665543 568998888775 334445555778766554
No 245
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=20.30 E-value=2.4e+02 Score=18.72 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCC
Q 029680 93 YFDECISFIDEAKRQRGGVLVHCFA 117 (189)
Q Consensus 93 ~l~~~~~~i~~~~~~~~~VlVHC~~ 117 (189)
.+..+.+.+.+..+.+++++|.|..
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~ 37 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPS 37 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCc
Confidence 4666777777776567899999988
No 246
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=20.27 E-value=2.8e+02 Score=18.46 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 94 FDECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 94 l~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
+..+.+.++.+...|-++.+||. +.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 66777788888888999999997 43
No 247
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=20.17 E-value=2.2e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred HHHHHHHHH-HhcCCcEEEEcCCCCChHHHHHHHHHHHhCCCC
Q 029680 96 ECISFIDEA-KRQRGGVLVHCFAGRSRSVTIVVAYLMKKHGMS 137 (189)
Q Consensus 96 ~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~g~~ 137 (189)
.+.+++.+. +..+.+|+|.|..|...+ + .++++....|.+
T Consensus 90 ~~~~~l~~~Gi~~~~~VVvY~~~g~~~a-~-r~~~~L~~~G~~ 130 (320)
T PLN02723 90 AFAAAVSALGIENKDGVVVYDGKGIFSA-A-RVWWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCcchH-H-HHHHHHHHcCCC
Confidence 334444443 234569999998885333 2 334556666653
No 248
>PLN02444 HMP-P synthase
Probab=20.17 E-value=5.5e+02 Score=23.43 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=54.8
Q ss_pred HHhCCCceEEEeCCCCCCCC-------CCCeEEEEEEeccCC---CCchHH-HHHHHHHHHHHHHhcC-CcEEEEcC---
Q 029680 52 LKSRNITHILTVANALAPAH-------PNDFVYKVIGVADKE---DTNLSQ-YFDECISFIDEAKRQR-GGVLVHCF--- 116 (189)
Q Consensus 52 l~~~gi~~VI~l~~~~~~~~-------~~~~~~~~ip~~d~~---~~~~~~-~l~~~~~~i~~~~~~~-~~VlVHC~--- 116 (189)
....|..+|.+|+....... ...+-.--+|+-..- .....+ ..+.+.+.|.+..++| .-+-|||.
T Consensus 246 A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~Gv~~ 325 (642)
T PLN02444 246 ATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHAGVLL 325 (642)
T ss_pred HHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHH
Confidence 35589999999986554220 011111122221100 001111 1455667777776666 24558887
Q ss_pred -----------CCCChHHHHHHHHHHHhCCCC-----HHHHHHHHHHh
Q 029680 117 -----------AGRSRSVTIVVAYLMKKHGMS-----LSQAMGHVKSR 148 (189)
Q Consensus 117 -----------~G~~RS~~v~~ayL~~~~g~~-----~~~A~~~v~~~ 148 (189)
+=+||.|++.+.|++++..-. +++-++.+++.
T Consensus 326 ~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~Y 373 (642)
T PLN02444 326 RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQY 373 (642)
T ss_pred HHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHh
Confidence 446899999999999886532 55566666654
No 249
>PRK10565 putative carbohydrate kinase; Provisional
Probab=20.11 E-value=2.6e+02 Score=24.82 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChH-HHHHHHHHHHhCCCC
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRS-VTIVVAYLMKKHGMS 137 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS-~~v~~ayL~~~~g~~ 137 (189)
.+.+.+....+.+|+|-|-.|.|=. |.+++.+|. ..|+.
T Consensus 50 a~~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~-~~G~~ 89 (508)
T PRK10565 50 FQVARSAYPDARHWLVLCGHGNNGGDGYVVARLAQ-AAGID 89 (508)
T ss_pred HHHHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHH-HCCCc
Confidence 3444443334568999999988877 444555554 44553
No 250
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=20.09 E-value=2.1e+02 Score=21.93 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCC
Q 029680 95 DECISFIDEAKRQRGGVLVHCFAGR 119 (189)
Q Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~~G~ 119 (189)
+.+...++.+.+.|.+|.+||...-
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~ 132 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAE 132 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCcc
Confidence 3444456666677899999998543
No 251
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.07 E-value=2.1e+02 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCH
Q 029680 115 CFAGRSRSVTIVVAYLMKKHGMSLSQAMGHVKSRRPQAAPNS 156 (189)
Q Consensus 115 C~~G~~RS~~v~~ayL~~~~g~~~~~A~~~v~~~rp~~~~~~ 156 (189)
++.|.+|... =++.++....++-+||++.|+. +.+-.|..
T Consensus 283 ~KfG~~~~~~-~~s~~IR~G~itReeal~~v~~-~d~~~~~~ 322 (343)
T TIGR03573 283 LKFGFGRATD-HASIDIRSGRITREEAIELVKE-YDGEFPKE 322 (343)
T ss_pred hhcCCCcCch-HHHHHHHcCCCCHHHHHHHHHH-hcccccHH
Confidence 4688888755 5577788888999999999999 33344433
No 252
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=20.01 E-value=1.3e+02 Score=23.04 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChHHHHH
Q 029680 98 ISFIDEAKRQRGGVLVHCFAGRSRSVTIV 126 (189)
Q Consensus 98 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 126 (189)
.+.|.+.+..+++|.|+.++|++=|..++
T Consensus 7 ~~av~~rl~~~~~i~~~LSGGlDSs~i~~ 35 (255)
T PF00733_consen 7 EEAVARRLRSDKPIGILLSGGLDSSAIAA 35 (255)
T ss_dssp HHHHHHHCGCTSEEEEE--SSHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCChhHHHHHH
Confidence 34455555678899999999986554433
Done!