BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029682
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 111 PEKRQRVPSAYNQFIKEEIQRIKAN---NPDISHREAFSTAAKNWAHFPHI--------- 158
P++ + + Y ++ RI PD + RE F T+ KNW FP
Sbjct: 54 PQQTETPGALYQDILRAVYDRIAKEWGLEPDAAEREEFGTSVKNWPAFPDTVEALQYLKK 113
Query: 159 HFGLMLEAN---NQPKLDDA 175
H+ L++ +N N+ KL +A
Sbjct: 114 HYKLVILSNIDRNEFKLSNA 133
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 156
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 15 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52
>pdb|3TMM|A Chain A, Tfam Imposes A U-Turn On Mitochondrial Dna
Length = 238
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 156
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 47 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84
>pdb|2W2D|B Chain B, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|D Chain D, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 431
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 225 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 273
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 274 KVNTQIDLIRKKMKEALENQ---AEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 330
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 331 INKAMININKF 341
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 98 PTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 139
P + T ++ K Q+ Y+ + E I ++KANNPD+
Sbjct: 54 PVDATTNPSLILKAVKEQK----YSNLVAETISKVKANNPDL 91
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TK7|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase
B (Tala) From Francisella Tularensis In Covalent Complex
With Fructose 6- Phosphate
pdb|3TNO|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3TNO|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3UPB|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|3UPB|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis In Covalent Complex With
Arabinose-5-Phosphate
pdb|4E0C|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
pdb|4E0C|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Transaldolase
From Francisella Tularensis (Phosphate-Free)
Length = 345
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 98 PTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 139
P + T ++ K Q+ Y+ + E I ++KANNPD+
Sbjct: 54 PVDATTNPSLILKAVKEQK----YSNLVAETISKVKANNPDL 91
>pdb|3C0T|A Chain A, Structure Of The Schizosaccharomyces Pombe Mediator
Subcomplex Med8c18
Length = 207
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 140 SHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRN 188
SH E + +KN + + LE N++PK +D G R ++R L N
Sbjct: 64 SHDETDTEWSKN------TQWSMYLEGNSEPKREDKCGIRPVNRAKLTN 106
>pdb|4H63|R Chain R, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 209
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 140 SHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASGNRLMSRTALRN 188
SH E + +KN + + LE N++PK +D G R ++R L N
Sbjct: 66 SHDETDTEWSKN------TQWSMYLEGNSEPKREDKCGIRPVNRAKLTN 108
>pdb|2PCD|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|3PCF|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCH|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCL|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCM|A Chain A, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|B Chain B, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|C Chain C, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|D Chain D, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|E Chain E, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|F Chain F, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCA|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCI|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCJ|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCK|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCN|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCB|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCC|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCD|A Chain A, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|B Chain B, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|C Chain C, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|D Chain D, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|E Chain E, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|F Chain F, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCE|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCG|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|1YKK|A Chain A, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|C Chain C, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|E Chain E, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|G Chain G, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|I Chain I, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|K Chain K, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKL|A Chain A, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|C Chain C, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|E Chain E, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|G Chain G, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|I Chain I, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|K Chain K, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKM|A Chain A, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|C Chain C, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|E Chain E, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|G Chain G, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|I Chain I, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|K Chain K, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKN|A Chain A, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|C Chain C, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|E Chain E, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|G Chain G, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|I Chain I, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|K Chain K, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKO|A Chain A, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|C Chain C, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|E Chain E, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|G Chain G, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|I Chain I, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|K Chain K, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKP|A Chain A, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|C Chain C, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|E Chain E, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|G Chain G, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|I Chain I, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|K Chain K, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|3LMX|A Chain A, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|B Chain B, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|C Chain C, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|A Chain A, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|B Chain B, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|C Chain C, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|D Chain D, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|E Chain E, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|F Chain F, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|A Chain A, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|B Chain B, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|C Chain C, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3MFL|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|D Chain D, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|E Chain E, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|F Chain F, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|A Chain A, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|B Chain B, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|C Chain C, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 200
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 156 PHIHFGLMLEANNQPKLDDASGNRL 180
P++H GL LEA P D NRL
Sbjct: 15 PYVHIGLALEAAGNPTRDQEIWNRL 39
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis.
pdb|3IGX|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis
Length = 324
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 98 PTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 139
P + T ++ K Q+ Y+ + E I ++KANNPD+
Sbjct: 33 PVDATTNPSLILKAVKEQK----YSNLVAETISKVKANNPDL 70
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 52 NMAAAFQSLSWQDVHHH---------QAPSYASPE--CRIDLGSSSKCNNKISAMRTP 98
++AAA L + + H ++P SP C DLGS K NN + + TP
Sbjct: 119 DVAAALDFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPITTP 176
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 26.6 bits (57), Expect = 8.3, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 720 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 768
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 769 KVNTQIDLIRKKMKEALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 825
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 826 INKAMININKF 836
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 26.6 bits (57), Expect = 8.3, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 753 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 801
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 802 KVNTQIDLIRKKMKEALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 858
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 859 INKAMININKF 869
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 12 QLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNL 48
L Y N N + V + C +L +I+T+ CG C L
Sbjct: 204 DLPYFKINCVNETIEVEI-CGALKNIITLACGFCDGL 239
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 26.6 bits (57), Expect = 8.9, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 670 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 718
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 719 KVNTQIDLIRKKMKEALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 775
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 776 INKAMININKF 786
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 26.6 bits (57), Expect = 9.0, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 671 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 719
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 720 KVNTQIDLIRKKMKEALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 776
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 777 INKAMININKF 787
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 26.6 bits (57), Expect = 10.0, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 27 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSS 86
+++P +V+ + +++ A + ++ W +V+ + ++ +
Sbjct: 671 IAIPVLGTFALVSYIANKVLTVQTIDNALSKRNEKWDEVYKYIVTNWLA----------- 719
Query: 87 KCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EA 144
K N +I +R +A E + + + YNQ+ +EE I N D+S + E+
Sbjct: 720 KVNTQIDLIRKKMKEALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNES 776
Query: 145 FSTAAKNWAHF 155
+ A N F
Sbjct: 777 INKAMININKF 787
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,783,585
Number of Sequences: 62578
Number of extensions: 215780
Number of successful extensions: 470
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 29
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)