BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029682
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/166 (75%), Positives = 138/166 (83%), Gaps = 9/166 (5%)
Query: 8 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH 67
+A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS +
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-- 63
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVN-PPEKRQRVPSAYNQFIK 126
QA +YA PE GSSS+ + KI + R T TE+R+VN PPEKRQRVPSAYNQFIK
Sbjct: 64 -QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPPEKRQRVPSAYNQFIK 117
Query: 127 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 172
EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct: 118 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+D + E++CY+ C+FC +LAVSVP +SL +VTVRCGHC+NL S+N+ + S +
Sbjct: 3 VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62
Query: 66 HHHQAPS---YASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYN 122
H P S R D SSS+ N +S +A + PPEKRQRVPSAYN
Sbjct: 63 HQDLQPHRQHTTSLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPSAYN 120
Query: 123 QFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDAS 176
+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K D S
Sbjct: 121 RFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 122/179 (68%), Gaps = 9/179 (5%)
Query: 3 SCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSW 62
S I APE +CY+ CNFCN + AVSVP +S+L+IVTVRCGHC++L SVN+ Q+L
Sbjct: 2 SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61
Query: 63 QDVHHHQ----APSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVP 118
+D H Q + + E + GSSS+ M N V PPEKRQRVP
Sbjct: 62 ED--HLQDNLKMHNMSFRENYSEYGSSSRYGR--VPMMFSKNDTEHMLHVRPPEKRQRVP 117
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKLDDASG 177
SAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL +++ KLD+A G
Sbjct: 118 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSK-KLDEAIG 175
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 114/191 (59%), Gaps = 38/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW 62
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ A+ L +
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 63 --------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
+V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEERVVNPP---------EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
AT+ P EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 153 AHFPHIHFGLM 163
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 114/191 (59%), Gaps = 38/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW 62
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ A+ L +
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 63 --------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
+V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEERVVNPP---------EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
AT+ P EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 153 AHFPHIHFGLM 163
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 166 bits (420), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 118/186 (63%), Gaps = 18/186 (9%)
Query: 7 DVAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQD 64
+AP EQ+CY+ CNFCN +LAVSVP +S+L+IVTVRCGHC+NL SVN+ S + QD
Sbjct: 4 QIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD 63
Query: 65 VHHHQAPSYASPECRIDLGSSSKCN----NKISAMRTP-----------TNKATEERV-V 108
HHH C D + + S +R P N+ E+ +
Sbjct: 64 HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA 123
Query: 109 NPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANN 168
PPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183
Query: 169 QPKLDD 174
KL D
Sbjct: 184 GKKLVD 189
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 108/191 (56%), Gaps = 38/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEER----------VVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
++ PPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 153 AHFPHIHFGLM 163
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 108/191 (56%), Gaps = 38/191 (19%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEER----------VVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
++ PPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 153 AHFPHIHFGLM 163
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 111/175 (63%), Gaps = 17/175 (9%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ LCY+ CNFC +LAV+VP +SL VTVRCG C+NL SVNM + S Q
Sbjct: 23 DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGP 82
Query: 71 PSYASPECRID-LGSSSKCNNKISAMRTPT-------------NKATEERVVN-PPEKRQ 115
SY +P+ ++ L + N + + PT ++ + VN PPEKRQ
Sbjct: 83 HSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQ 142
Query: 116 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 170
RVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+ +NQP
Sbjct: 143 RVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV--PDNQP 195
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 106/188 (56%), Gaps = 39/188 (20%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSV-------------NMAAAF 57
+QLCY+ C+FC+ VLAVSVP SSL VTVRCGHCSNL SV N+ +F
Sbjct: 23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82
Query: 58 --------------------QSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRT 97
Q+++ + H A ++ E + + + + + M
Sbjct: 83 LPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPR 142
Query: 98 PTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 157
P EKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPH
Sbjct: 143 PPPANRPP------EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPH 196
Query: 158 IHFGLMLE 165
IHFGLM +
Sbjct: 197 IHFGLMAD 204
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 4/158 (2%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+ E +CY+ CN+CN +L V+VP + +IVTVRCGHC+ + S+++A Q+ + QD
Sbjct: 3 VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD- 61
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE-RVVNPPEKRQRVPSAYNQF 124
HQ + + N + S P + ++ + PPEKRQRVPSAYN+F
Sbjct: 62 --HQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRF 119
Query: 125 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 162
IKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 120 IKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 91/149 (61%), Gaps = 18/149 (12%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAFQSLSWQDVHHHQ 69
E LCY+ C +CN VLAV VPC L+D VTV+CGHC+NL ++ Q LS D H
Sbjct: 8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTD---HP 64
Query: 70 APSYASP--ECRIDLGSSSKCNNKISAMRTPTNKATEER---VVNPPEKRQRVPSAYNQF 124
+ P +CR N+ + +PT+ R VV PPEK+ R+PSAYN+F
Sbjct: 65 LGPFQGPCTDCR---------RNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRF 115
Query: 125 IKEEIQRIKANNPDISHREAFSTAAKNWA 153
++EEIQRIKA PDI HREAFS AAKNWA
Sbjct: 116 MREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 98/163 (60%), Gaps = 13/163 (7%)
Query: 10 PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAF-------QSLS 61
P Q+C++ C FC +L VSVP +SL +VTVRCGHC++L SVN M A+F
Sbjct: 18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77
Query: 62 WQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATE----ERVVN-PPEKRQR 116
+ + + E + K N+ + + + N+ + +VVN PPEKRQR
Sbjct: 78 LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQR 137
Query: 117 VPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 159
PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 138 APSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQ---SLSWQDVHH 67
E L Y+ C+ CN +LAV +P +LD VTV+CGHC NL + Q SL+ Q
Sbjct: 19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQ---- 74
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKE 127
S+ D S ++ S + VV PPEK+QR+PSAYN+F+++
Sbjct: 75 --MQSFGGS----DYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRD 128
Query: 128 EIQRIKANNPDISHREAFSTAAKNWAHF 155
EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 129 EIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 59/71 (83%)
Query: 93 SAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
+A + P+ + + PPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 198 AAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 257
Query: 153 AHFPHIHFGLM 163
AHFPHIHFGLM
Sbjct: 258 AHFPHIHFGLM 268
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM 53
D EQLCY+ C++C+ VL VSVP SSL + VTVRCGHCS+L +VNM
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNM 100
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 89/154 (57%), Gaps = 11/154 (7%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWS-VNM----AAAFQSLSWQDV 65
E+L + C+FC VL VSVPCSS+L +V V+CGHCS + S VN+ +A L+ Q++
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQEL 73
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFI 125
P S E SS A A PP ++QR PSAYN F+
Sbjct: 74 DAGPPPGEYSDE------SSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFV 127
Query: 126 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 159
KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 128 KEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 91 KISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAK 150
KI R P K E + P +R SAY ++ ++IK+++P IS + A +
Sbjct: 522 KIVKDRKPRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGE 581
Query: 151 NW 152
W
Sbjct: 582 LW 583
>sp|Q5GSE1|DNAK_WOLTR Chaperone protein DnaK OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=dnaK PE=3 SV=1
Length = 635
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 80 IDLGSSSKC--------NNKISAMRTPTNKA---TEERVVNPPEKRQRVPSAYNQF 124
IDLG+++ C NK A TP+ A + ER++ P KRQ +A N F
Sbjct: 7 IDLGTTNSCVAIQGKIIENKEGARTTPSVVAFTSSGERLIGAPAKRQATTNASNTF 62
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 89 NNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA 148
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI-------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKML 76
Query: 149 AKNW 152
K+W
Sbjct: 77 GKSW 80
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 89 NNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA 148
++ +S R+P K +E R+ +R +A+ + K+E +R+ NPD+ + E
Sbjct: 24 SDGLSPHRSPREKGSETRI-------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKML 76
Query: 149 AKNW 152
K+W
Sbjct: 77 GKSW 80
>sp|Q6FK47|IPI1_CANGA Pre-rRNA-processing protein IPI1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=IPI1 PE=3 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 13 LCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGH--CSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ YI +I+ V + L + CG C W+ MA F+ LSW+ H +
Sbjct: 135 VLYINMGMTHILPRVQADSTKFLGCLLKYCGQEFCDQAWNKLMAGIFRVLSWETQHSKNS 194
Query: 71 PSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE 105
A +SK +NK A T A E
Sbjct: 195 NQAAGAM------QTSKRDNKFQAAHLSTLYALLE 223
>sp|Q55E26|GXCB_DICDI Rac guanine nucleotide exchange factor B OS=Dictyostelium
discoideum GN=gxcB PE=2 SV=1
Length = 1198
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 95 MRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAH 154
M T K EE + + + + YN I + + N+P +S+ E S+ NW H
Sbjct: 629 MDTRRQKVIEEIIATEQSYVKSLSTVYNLLIVPLLNSLDTNSPILSNDE-ISSIFGNWEH 687
Query: 155 FPHIHFGLMLEAN-------NQPKLDDASGNR 179
H L+ E N +DD++ N+
Sbjct: 688 LLRSHINLLKEFKLKLNLPFNDLTIDDSNQNQ 719
>sp|A4VUD1|ADDB_STRSY ATP-dependent helicase/deoxyribonuclease subunit B OS=Streptococcus
suis (strain 05ZYH33) GN=rexB PE=3 SV=1
Length = 1088
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 74 ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIK------- 126
++ R DL S +AM + N ATE+ V++ P+ + + +IK
Sbjct: 605 SASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPYIKILQKMGL 664
Query: 127 --EEIQRIKANNP-DISHREAF 145
EE RIK +P DI H ++
Sbjct: 665 KSEERGRIKTLSPQDIGHYKSL 686
>sp|A4W0M6|ADDB_STRS2 ATP-dependent helicase/deoxyribonuclease subunit B OS=Streptococcus
suis (strain 98HAH33) GN=rexB PE=3 SV=1
Length = 1088
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 74 ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIK------- 126
++ R DL S +AM + N ATE+ V++ P+ + + +IK
Sbjct: 605 SASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPYIKILQKMGL 664
Query: 127 --EEIQRIKANNP-DISHREAF 145
EE RIK +P DI H ++
Sbjct: 665 KSEERGRIKTLSPQDIGHYKSL 686
>sp|Q45894|BXA2_CLOBO Botulinum neurotoxin type A OS=Clostridium botulinum GN=botA PE=1
SV=3
Length = 1296
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 28 SVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSK 87
++P IV+ + ++N A + ++ W +V+ + ++ + K
Sbjct: 672 ALPVFGTFAIVSYIANKVLTVQTINNALSKRNEKWDEVYKYTVTNWLA-----------K 720
Query: 88 CNNKISAMRTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHR--EAF 145
N +I +R KA E + + + YNQ+ +EE I N D+S + E+
Sbjct: 721 VNTQIDLIREKMKKALENQA---EATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESI 777
Query: 146 STAAKNWAHF 155
++A N F
Sbjct: 778 NSAMININKF 787
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 156
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 96 RTPTNKATEERVVNPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 152
R P +K +E R+ +R +A+ + K+E +R+ NPD+ + E K+W
Sbjct: 34 RPPGDKGSESRI-------RRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 156
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 119 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 156
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.129 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,398,567
Number of Sequences: 539616
Number of extensions: 2692155
Number of successful extensions: 6322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6268
Number of HSP's gapped (non-prelim): 67
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)