BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029683
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ TFGD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -LKFPFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+ + +E F +L+VN+T+H L P+H V++A E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ +GD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -LKFPFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+ + +E F +L+VN+T+H L P+H V++A E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EFR FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 --VEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F +LL+N+T+H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 --VEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F +LL+N+T+H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 --VEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F +LL+N+T+H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ GDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 --VEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F +LL+N+T+H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V L ++L EF+ FG K L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 --VEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F +LL+N+T+H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + S +TV +M+ DRGY + E+ SL EFR D ++ +L + ++NP+ + L
Sbjct: 10 RLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCFQANPTAESL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I QS++ A K +
Sbjct: 69 EKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPSANKLIPTVS 127
Query: 137 PFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
P +E F DL+VN+T H L PKH L+ E+ +L+++Y+++ Q+
Sbjct: 128 PASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQL 174
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + EL +L +F+ + D + R + ++NP+++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMG-RAQRKMMSFQANPTEESM 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K+ G I I Q+N+ A K V P
Sbjct: 70 TKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIP 128
Query: 138 -FKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F+ L+VN+T H L PKH L+ E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQL 175
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +F+ + D + R + +SNP+++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMG-KPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV-LKF 136
+ V + + + ++ I K G I I QS + A K +
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 137 PFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
P +E F L+VN+T H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQL 175
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TVLQML+DR Y + E F E+L + + +P+ + V +
Sbjct: 11 RKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPD 63
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP----FKVEIFYITDL 148
T ++ I+ Y I+ + I+++Q N+ FA++ + +F +E F +L
Sbjct: 64 TPKVGVTQIKK-YVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 149 LVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
LVN+T H L PKH +L+ E+ +L+ +YK++ Q+
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQL 157
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFT---FGDKCDLESLRLCLPLRSNPSK 84
R F + +T Q+++DRGY V +EL +L +F+ G D +L ++ +K
Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69
Query: 85 KMLVV------YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP- 137
+ + +G +E+RT + L ILI ++M A K +
Sbjct: 70 GTIYIEFAKEPSVGIKEMRT------FVHTLGDHNHKTGILIYANSMTPSAAKIIATVTG 123
Query: 138 -FKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
F +E F +DL+VN+T H L PKH +LS E+ +L+ +YK+ Q+
Sbjct: 124 QFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQL 170
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ SL +F+ + D + R + +SNP+++
Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMG-KPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV-LKF 136
+ V + + + ++ I K G I I QS + A K +
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 137 PFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
P +E F L+VN+T H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQL 175
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -FKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+E F L+VN+T H L PKH LS+ E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE----SLRLCLPLRSNPSK----- 84
RT +++ DRGY + + E+ S +F + CD ++C +P
Sbjct: 14 RTAKELVKDRGYTITDKEVNLSFDQF---VSEMCDPMGKPIKKKMCFMASPSPEAIEKFP 70
Query: 85 ---KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF-PFKV 140
+ V + + + +R I + G IL+ ++NM A + + P +
Sbjct: 71 EMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANRLIPSVAPATI 129
Query: 141 EIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
+ F TDLLVN+TKH+L P H LS E+ L+++Y+++ Q+
Sbjct: 130 DTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQL 172
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + RTV +M+ DRGY + E+ SL +F+ + D R + +SNP+++ L
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMG-RPQRKMMSFQSNPTEETL 69
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + ++ I K G I I Q+ + A K +
Sbjct: 70 KKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSALKLLPSVA 128
Query: 137 PFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQV 183
P +E F T L+VN+T H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQL 175
>sp|O74019|RPOH_PYRHO DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoH PE=3 SV=1
Length = 82
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 151 NVTKHILQPKHEVLSAGERDKLMKKYKIEGKQVT 184
N+ KH+L P+H +LS E+ L++KYKI Q+
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLP 41
>sp|Q9V116|RPOH_PYRAB DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoH PE=3 SV=1
Length = 82
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 151 NVTKHILQPKHEVLSAGERDKLMKKYKIEGKQVT 184
N+ KH+L P+H +LS E+ L++KY+I Q+
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLP 41
>sp|Q58443|RPOH_METJA DNA-directed RNA polymerase subunit H OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoH PE=1 SV=1
Length = 78
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 151 NVTKHILQPKHEVLSAGERDKLMKKYKIEGKQ 182
VT HIL PKHE++ E ++++K+Y I+ +Q
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQ 33
>sp|A3DMP2|RPOH_STAMF DNA-directed RNA polymerase subunit H OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rpoH PE=3 SV=1
Length = 91
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 151 NVTKHILQPKHEVLSAGERDKLMKKYKIEGKQVTIL 186
N+ +H L PKHEVLS E +L++K KI+ Q+ +
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWI 42
>sp|Q91F72|454R_IIV6 Putative DNA-directed RNA polymerase subunit 454R OS=Invertebrate
iridescent virus 6 GN=IIV6-454R PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 139 KVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKY---KIEGKQVTIL 186
KVEIF+ DL +N+TK+ LQP L E KKY KIE + IL
Sbjct: 95 KVEIFHNKDLQMNITKYHLQPLFNKLLDEEAKDFKKKYIKCKIENGKKIIL 145
>sp|C6A1F8|RPOH_THESM DNA-directed RNA polymerase subunit H OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoH PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 155 HILQPKHEVLSAGERDKLMKKYKIEGKQV 183
H+L P+H VLS E ++L+KKY I+ Q+
Sbjct: 12 HVLVPEHRVLSKEETEELLKKYNIKPSQL 40
>sp|Q7DDL5|CYSK_NEIMB Cysteine synthase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=cysK PE=1 SV=1
Length = 310
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 72 LRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL---HGLILILQSNMNTF 128
L + +P + +KML+ G E I T A G+ G I ++L H + +
Sbjct: 90 LAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNE 149
Query: 129 ARKEVLKFPFKVEIFYITDLLVNVTKHILQPKHEVLSAGERDKLMKKYKIEGKQVTI 185
A EV + EI+ TD V+V + + +++KKYK E K V +
Sbjct: 150 ANPEVHRKTTAEEIWRDTDGKVDV---FVAGVGTGGTITGVGEVLKKYKPEVKVVAV 203
>sp|A9A458|RPOH_NITMS DNA-directed RNA polymerase subunit H OS=Nitrosopumilus maritimus
(strain SCM1) GN=rpoH PE=3 SV=1
Length = 83
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 152 VTKHILQPKHEVLSAGERDKLMKKYKIEGKQVTIL 186
V HI PKHE++S E ++++KKY + ++ ++
Sbjct: 10 VPDHIYVPKHEIISKTEAEEVLKKYNCKPTELPLI 44
>sp|Q8U0M2|RPOH_PYRFU DNA-directed RNA polymerase subunit H OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoH
PE=3 SV=1
Length = 82
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 151 NVTKHILQPKHEVLSAGERDKLMKKYKI 178
++ H+L P+H VLS E+ L++KYKI
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKI 35
>sp|Q8QN36|CP77_CWPXB Ankyrin repeat domain-containing protein CP77 OS=Cowpox virus
(strain Brighton Red) GN=CP77 PE=1 SV=1
Length = 668
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 68 DLESLRLCLP-LRSNPSKKMLVVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSN 124
D E++ L L + S+ + +L+ Y+ +I + + YG ++NKEA+HG + N
Sbjct: 322 DKETISLILKTMNSDVLQHILIEYITFSDIDISLVEYMLEYGAVVNKEAIHGYFKNI--N 379
Query: 125 MNTFARKEVLK 135
++++ K +LK
Sbjct: 380 IDSYTMKYLLK 390
>sp|P12932|CP77_COWPX Ankyrin repeat domain-containing protein CP77 OS=Cowpox virus
GN=CP77 PE=3 SV=1
Length = 669
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 68 DLESLRLCLP-LRSNPSKKMLVVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSN 124
D E++ L L + S+ + +L+ Y+ +I + + YG ++NKEA+HG + N
Sbjct: 322 DKETISLILKTMNSDVLQHILIEYITFSDIDISLVEYMLEYGAVVNKEAIHGYFKNI--N 379
Query: 125 MNTFARKEVLK 135
++++ K +LK
Sbjct: 380 IDSYTMKYLLK 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,560,031
Number of Sequences: 539616
Number of extensions: 2520825
Number of successful extensions: 6272
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6212
Number of HSP's gapped (non-prelim): 47
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)