BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029684
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 83/156 (53%), Gaps = 26/156 (16%)
Query: 58 DTFRAPPLPLPYDV---VFGC-----------------PPSTDSESVGETVSGGSFETLA 97
+ FR+ P PLPYD F P +DS++ E+ G +
Sbjct: 75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWAN 134
Query: 98 MCEVVEDADCKTQAS-----SLIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPK 151
+ D D K + S ++ S KS ++ N++ SE+ED CP CLEEY +ENPK
Sbjct: 135 NKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPK 194
Query: 152 LITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187
++TKC HHFHLSCI EW ERSE+CP+C + M F+ T
Sbjct: 195 IVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184
+D C ICLE + ++P +T C+H +HL CI+EW++RS+ CPIC Q +
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVL 92
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
+D C ICLE + +P +T C+H +HL CILEW +RS CP+C Q +
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSI 77
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 92 SFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENP 150
+FE L+ + + K L+ K +++ N AS +D+C +CL+++ E
Sbjct: 147 TFEELS--SIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 151 KLITKCEHHFHLSCILEWNERSESCPICDQEM 182
+ + C H FHL CI W R SCP+C +++
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 108 KTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCIL 166
K L+ K ++ N ASE D+C +CL+++ E + + C H FHL CI
Sbjct: 166 KGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCID 225
Query: 167 EWNERSESCPICDQEM 182
W R SCP+C +++
Sbjct: 226 NWLLRHGSCPMCRRDI 241
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 85 GETVSGGSFETLAMC-EVVEDADCKTQASSLIASPRKSEVSQLNVFAASEE------EDT 137
+ +GG + MC + C+ +A + R+S V +++ + +D
Sbjct: 561 AQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISALPEATPAQLQAFDDV 620
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184
C IC +E + IT+C H FH C+ +W + CP+C + M++
Sbjct: 621 CAICYQEMYSAK---ITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMY 664
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 137 TCPICLEEYDTENPKLIT-KCEHHFHLSCILEWNERSESCPIC 178
TCP+CLE D+E L+T C+H FH C+ +W ++ CP+C
Sbjct: 239 TCPVCLERMDSETTGLVTIPCQHTFHCQCLNKW--KNSRCPVC 279
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 128 VFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185
V ++++ + CP+CL E++ E + C H FH +CIL W ++ SCP+C E+ D
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 135
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E +D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQEMIFD 185
++CP+C Q++ +
Sbjct: 580 DTCPMCHQKVYIE 592
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S I S +K E+ + + CPICL EY T E + + +CEH FH CI W +
Sbjct: 302 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 361
Query: 172 SESCPIC 178
SCP+C
Sbjct: 362 HSSCPVC 368
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S+I S +K+E+ + + ++ CPICL EY + E + I +C+H FH CI W +
Sbjct: 295 SIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKI 354
Query: 172 SESCPIC 178
SCP+C
Sbjct: 355 HGSCPLC 361
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQEMIFD 185
++CP+C Q++ +
Sbjct: 580 DTCPMCHQKVYIE 592
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQEMIFD 185
++CP+C Q++ +
Sbjct: 580 DTCPMCHQKVYIE 592
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 127 NVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
NV + E+ C +CL E+ DT+ +L+ C H FHL CI W + +CP+C + +
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W + ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQEMI 183
+C Q+++
Sbjct: 280 VCKQKVV 286
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 106 DCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSC 164
D + ASS +P S L + A E C ICL E++ E+ +++ KC+H FH+ C
Sbjct: 78 DPEAAASSTPTTPTLVYSSDLELAGAEAE---CAICLSEFEQGESIQVLEKCQHGFHVKC 134
Query: 165 ILEWNERSESCPICDQEMIFDHT 187
I +W SCP C + H+
Sbjct: 135 IHKWLSTRSSCPTCRTSIFSQHS 157
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q F
Sbjct: 91 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQP--F 146
Query: 185 DHTF 188
D F
Sbjct: 147 DSIF 150
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
C ICL++ T E + + KC+H FHL C+ +W R SCPIC Q +
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 136 DTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
D C ICL E+ D + +LI+ C H FH CI W E ++CP+C +E+
Sbjct: 152 DQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRREL 199
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 105 ADCKTQASSLIASPRKS----EVSQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHH 159
A + QA L AS ++ + S + +E C +CL E+ D E +LI KC H
Sbjct: 107 ATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHV 166
Query: 160 FHLSCILEWNERSESCPICDQEMI 183
FH CI W +CP+C ++I
Sbjct: 167 FHPGCIDAWLRSHTTCPLCRADLI 190
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 207 KEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTC 266
Query: 176 PICDQEM 182
P+C + +
Sbjct: 267 PVCRKSL 273
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 134 EEDTCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERSESCPIC 178
E CP+CL E++ E+ +L+ KC H FH+SCI W +CP+C
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 119 RKSEVSQLNVFAASEEE------DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R+ V+++ S +E D C IC Y N +IT C H FH C+ +W
Sbjct: 512 RRDAVNKIKSLPVSTKEQLEQHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQ 568
Query: 173 ESCPIC 178
E+CP+C
Sbjct: 569 ETCPLC 574
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 125 QLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ + S++ C +CL ++++ E +L+ KC H FH+ CI +W E+ +CP+C
Sbjct: 110 RFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q F
Sbjct: 90 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQP--F 145
Query: 185 DHTF 188
D F
Sbjct: 146 DSIF 149
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186
C ICL ++ D E +++ KC H FH+ CI W SCP C Q ++ +
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
C +CL ++ D E +L+ KC H FH+ CI +W E+ +CP+C +
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV 169
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185
CP+CL E++ CEH FH SCIL W ++ SCP+C E+ D
Sbjct: 79 CPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTD 126
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 105 ADCKTQASSLIASP--RKSEVSQLNVFAASEEEDT----CPICLEEYD-TENPKLITKCE 157
AD T A+S++AS + + L VF S+E C +CL E++ +E +++ C+
Sbjct: 80 ADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQ 139
Query: 158 HHFHLSCILEWNERSESCPIC 178
H FH+ CI W +CP+C
Sbjct: 140 HTFHVDCIDMWFHSHSTCPLC 160
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 124 SQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
S + +E CP+CL E+ D E +LI +C H FH CI W +CP+C +
Sbjct: 104 STVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163
Query: 183 I 183
+
Sbjct: 164 V 164
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 120 KSEVSQLNVFAASEEED----TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K+ V L V S E+ CP+CL E++ + C+H FH CIL W ++ SC
Sbjct: 57 KAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSC 116
Query: 176 PICDQEMIFDHT 187
P+C E+ D+
Sbjct: 117 PLCRLELPTDNA 128
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 206 KEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTC 265
Query: 176 PICDQEM 182
P+C + +
Sbjct: 266 PVCRKSL 272
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187
CP+C E+Y C H FH SCI+ W E+ +SCP+C + + +T
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 280
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 121 SEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICD 179
+ + ++ + S E +C +CL+++ E + + C H FHL CI +W R SCP+C
Sbjct: 159 NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
Query: 180 QEM 182
+ +
Sbjct: 219 RHL 221
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ D C IC Y N +IT C H FH C+ +W E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
C ICL E+ D + +LIT C H FH +CI W E ++CP+C E+
Sbjct: 103 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL 148
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182
C ICL E+ D E +L+ KC+H FH CI W E +CP+C +
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + I C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 138 CPICLEEYDTENP-KLITKCEHHFHLSCILEWNERSESCPICDQEMI 183
CP+CL E++TE+ +L+ KC H FH+ CI W +CP+C ++
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183
SE C +C+ +Y T N C H FH+ CI W + +CPIC Q ++
Sbjct: 626 SELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVL 677
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 78 STDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVF-------A 130
+T ES G+ GGS + V E+ + +A ++ ++ ++ F A
Sbjct: 67 TTAVESTGD--RGGSVILPRIIFVAEEDNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSA 124
Query: 131 ASEE------EDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
AS + + TC ICL EY + E +++ +C+H+FHL C+ W + + SCP+C
Sbjct: 125 ASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVC 179
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185
CP+CL E++ CEH FH +CIL W ++ SCP+C E+ D
Sbjct: 79 CPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTD 126
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 128 VFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185
V S+ E CP+CL E++ E + C H FH SCIL W ++ SCP+C E+ D
Sbjct: 66 VIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTD 123
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177
F + ++ ++CPICL + + C H+F L CI+EW++ + SCP+
Sbjct: 99 FNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV 147
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 109 TQASSLIASPRKSEVSQLNVFAASE-------EEDTCPICLEEYDTENPKLITKCEHHFH 161
T+ S I + K + QL + E ED C +C + Y ++ I C+H FH
Sbjct: 222 TRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFH 281
Query: 162 LSCILEWNERSESCPIC 178
+CI W +CP+C
Sbjct: 282 KACIDPWLLAHRTCPMC 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,120,439
Number of Sequences: 539616
Number of extensions: 2775312
Number of successful extensions: 7730
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 7225
Number of HSP's gapped (non-prelim): 745
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)