Query 029684
Match_columns 189
No_of_seqs 255 out of 1682
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 16:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.7 4.7E-17 1E-21 97.5 2.5 44 136-179 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.5 1.3E-14 2.9E-19 96.0 4.2 46 134-179 18-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.5 1.5E-14 3.2E-19 120.5 3.7 51 136-186 230-281 (348)
4 PHA02929 N1R/p28-like protein; 99.4 6.4E-13 1.4E-17 106.2 4.4 51 133-183 172-227 (238)
5 COG5243 HRD1 HRD ubiquitin lig 99.3 6.3E-13 1.4E-17 110.2 3.5 56 132-187 284-349 (491)
6 PF12861 zf-Apc11: Anaphase-pr 99.3 1.1E-12 2.3E-17 88.1 3.9 53 134-186 20-85 (85)
7 PF13923 zf-C3HC4_2: Zinc fing 99.3 1.2E-12 2.5E-17 76.3 3.2 39 138-178 1-39 (39)
8 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.8E-12 4E-17 79.5 3.9 47 134-183 1-48 (50)
9 KOG0317 Predicted E3 ubiquitin 99.3 1.6E-12 3.4E-17 104.8 3.5 57 130-189 234-290 (293)
10 KOG0320 Predicted E3 ubiquitin 99.2 1.2E-11 2.6E-16 93.3 5.8 53 132-185 128-180 (187)
11 PLN03208 E3 ubiquitin-protein 99.2 7.5E-12 1.6E-16 96.5 4.4 51 133-186 16-82 (193)
12 COG5540 RING-finger-containing 99.2 9.7E-12 2.1E-16 100.8 3.8 51 133-183 321-372 (374)
13 cd00162 RING RING-finger (Real 99.2 1.7E-11 3.6E-16 72.6 3.9 44 137-182 1-45 (45)
14 PF15227 zf-C3HC4_4: zinc fing 99.2 1.4E-11 3E-16 72.8 3.1 38 138-178 1-42 (42)
15 KOG0823 Predicted E3 ubiquitin 99.2 1.6E-11 3.5E-16 96.3 3.1 53 132-187 44-99 (230)
16 PF14634 zf-RING_5: zinc-RING 99.2 3.9E-11 8.5E-16 71.6 3.8 44 137-180 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 99.1 5.9E-11 1.3E-15 69.6 3.4 39 138-178 1-41 (41)
18 smart00504 Ubox Modified RING 99.1 9.8E-11 2.1E-15 75.0 4.5 49 136-187 2-50 (63)
19 PHA02926 zinc finger-like prot 99.1 6.7E-11 1.5E-15 92.4 3.1 54 131-184 166-231 (242)
20 smart00184 RING Ring finger. E 99.0 5.9E-10 1.3E-14 63.6 3.4 38 138-178 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.9 6.7E-10 1.5E-14 94.8 4.2 52 131-185 22-73 (397)
22 KOG0802 E3 ubiquitin ligase [P 98.9 3.2E-10 6.9E-15 101.4 2.1 51 133-183 289-341 (543)
23 COG5194 APC11 Component of SCF 98.9 9.3E-10 2E-14 72.2 3.6 54 135-188 20-86 (88)
24 PF13445 zf-RING_UBOX: RING-ty 98.8 3.4E-09 7.4E-14 62.7 3.0 38 138-176 1-43 (43)
25 KOG1493 Anaphase-promoting com 98.8 8.5E-10 1.8E-14 71.8 -0.0 53 134-186 19-84 (84)
26 KOG2930 SCF ubiquitin ligase, 98.8 3.9E-09 8.4E-14 72.7 3.1 69 118-186 26-111 (114)
27 COG5574 PEX10 RING-finger-cont 98.7 9.9E-09 2.2E-13 82.1 2.4 52 133-187 213-266 (271)
28 PF04564 U-box: U-box domain; 98.7 1.7E-08 3.6E-13 66.8 3.1 51 134-187 3-54 (73)
29 smart00744 RINGv The RING-vari 98.6 3.1E-08 6.7E-13 60.3 3.5 42 137-179 1-49 (49)
30 KOG2164 Predicted E3 ubiquitin 98.6 1.4E-08 3E-13 87.9 2.7 49 135-186 186-239 (513)
31 KOG0287 Postreplication repair 98.6 1.2E-08 2.7E-13 84.1 1.1 49 133-184 21-69 (442)
32 KOG0804 Cytoplasmic Zn-finger 98.6 1.1E-08 2.5E-13 87.0 0.4 49 133-183 173-222 (493)
33 COG5432 RAD18 RING-finger-cont 98.5 4.8E-08 1E-12 79.2 1.9 48 133-183 23-70 (391)
34 KOG0828 Predicted E3 ubiquitin 98.4 8.5E-08 1.8E-12 82.6 1.9 51 133-183 569-634 (636)
35 PF11793 FANCL_C: FANCL C-term 98.4 5.5E-08 1.2E-12 63.8 -0.8 51 135-185 2-68 (70)
36 KOG2177 Predicted E3 ubiquitin 98.4 1.7E-07 3.8E-12 76.2 2.0 46 132-180 10-55 (386)
37 PF14835 zf-RING_6: zf-RING of 98.3 1.2E-07 2.7E-12 60.1 -0.3 49 134-186 6-54 (65)
38 KOG1734 Predicted RING-contain 98.2 3.7E-07 8E-12 73.4 1.1 53 131-183 220-281 (328)
39 KOG4265 Predicted E3 ubiquitin 98.1 1.5E-06 3.4E-11 72.4 3.1 48 133-183 288-336 (349)
40 KOG1039 Predicted E3 ubiquitin 98.1 1.3E-06 2.8E-11 73.5 2.2 52 133-184 159-222 (344)
41 KOG0311 Predicted E3 ubiquitin 98.1 4.1E-07 8.9E-12 75.6 -1.5 55 132-188 40-95 (381)
42 COG5219 Uncharacterized conser 98.1 8.8E-07 1.9E-11 81.6 0.3 54 131-184 1465-1524(1525)
43 PF11789 zf-Nse: Zinc-finger o 98.0 6E-06 1.3E-10 51.8 2.5 43 133-177 9-53 (57)
44 KOG0978 E3 ubiquitin ligase in 97.9 2.7E-06 5.8E-11 77.0 0.8 51 134-187 642-693 (698)
45 KOG4445 Uncharacterized conser 97.9 3.7E-06 8E-11 68.6 0.7 53 133-185 113-188 (368)
46 KOG4172 Predicted E3 ubiquitin 97.8 3.8E-06 8.3E-11 51.4 0.1 46 135-183 7-54 (62)
47 KOG0825 PHD Zn-finger protein 97.8 3.8E-06 8.2E-11 76.2 -0.4 54 133-186 121-174 (1134)
48 KOG2660 Locus-specific chromos 97.8 5.5E-06 1.2E-10 68.5 0.4 52 133-186 13-64 (331)
49 KOG0297 TNF receptor-associate 97.8 1.1E-05 2.3E-10 69.7 2.0 54 133-188 19-72 (391)
50 KOG1428 Inhibitor of type V ad 97.7 2.3E-05 5.1E-10 75.1 3.0 53 131-183 3482-3544(3738)
51 KOG4159 Predicted E3 ubiquitin 97.6 2.8E-05 6E-10 66.8 2.2 49 133-184 82-130 (398)
52 KOG1785 Tyrosine kinase negati 97.6 2.7E-05 5.8E-10 66.0 1.4 51 135-188 369-421 (563)
53 COG5152 Uncharacterized conser 97.5 3E-05 6.5E-10 59.9 1.0 45 135-182 196-240 (259)
54 PF12906 RINGv: RING-variant d 97.5 5.5E-05 1.2E-09 45.6 1.6 40 138-178 1-47 (47)
55 KOG2879 Predicted E3 ubiquitin 97.5 0.00013 2.8E-09 59.1 3.8 51 131-183 235-287 (298)
56 KOG1941 Acetylcholine receptor 97.4 3.6E-05 7.7E-10 65.1 0.2 50 131-180 361-413 (518)
57 PHA02862 5L protein; Provision 97.4 0.00011 2.4E-09 54.1 2.3 47 135-185 2-55 (156)
58 KOG4692 Predicted E3 ubiquitin 97.3 0.00016 3.5E-09 60.5 2.2 49 132-183 419-467 (489)
59 PF05883 Baculo_RING: Baculovi 97.2 0.00013 2.8E-09 53.3 1.4 35 135-169 26-66 (134)
60 KOG1002 Nucleotide excision re 97.2 0.00014 3E-09 63.8 1.7 55 130-187 531-590 (791)
61 KOG1813 Predicted E3 ubiquitin 97.2 0.00012 2.6E-09 59.8 1.0 45 135-182 241-285 (313)
62 PHA02825 LAP/PHD finger-like p 97.2 0.00032 6.8E-09 52.6 3.0 51 131-185 4-61 (162)
63 KOG3039 Uncharacterized conser 96.9 0.0011 2.4E-08 53.1 3.6 56 133-188 219-275 (303)
64 KOG4275 Predicted E3 ubiquitin 96.8 0.00015 3.2E-09 59.2 -1.8 42 135-183 300-342 (350)
65 PF14570 zf-RING_4: RING/Ubox 96.8 0.0015 3.3E-08 39.3 2.9 45 138-182 1-47 (48)
66 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0018 3.9E-08 52.9 3.8 56 132-188 110-166 (260)
67 PF10367 Vps39_2: Vacuolar sor 96.6 0.00081 1.7E-08 47.1 1.1 34 132-166 75-108 (109)
68 KOG1814 Predicted E3 ubiquitin 96.6 0.0015 3.3E-08 55.8 2.5 37 134-170 183-219 (445)
69 PHA03096 p28-like protein; Pro 96.5 0.0012 2.6E-08 54.5 1.8 45 136-180 179-231 (284)
70 KOG1952 Transcription factor N 96.4 0.0034 7.4E-08 58.0 3.9 51 130-180 186-244 (950)
71 KOG1571 Predicted E3 ubiquitin 96.3 0.0021 4.6E-08 54.0 2.0 45 133-183 303-347 (355)
72 KOG3970 Predicted E3 ubiquitin 96.3 0.0039 8.5E-08 49.3 3.4 54 131-185 46-107 (299)
73 COG5236 Uncharacterized conser 96.3 0.0039 8.5E-08 52.3 3.5 50 130-182 56-107 (493)
74 PF14447 Prok-RING_4: Prokaryo 96.2 0.0029 6.3E-08 39.0 1.6 48 135-187 7-54 (55)
75 KOG1940 Zn-finger protein [Gen 96.2 0.0029 6.2E-08 51.9 2.0 46 135-180 158-204 (276)
76 PF03854 zf-P11: P-11 zinc fin 95.9 0.003 6.4E-08 37.6 0.6 34 152-185 14-48 (50)
77 COG5175 MOT2 Transcriptional r 95.6 0.0094 2E-07 49.9 2.7 53 131-183 10-64 (480)
78 COG5222 Uncharacterized conser 95.5 0.0091 2E-07 49.2 2.4 48 136-185 275-324 (427)
79 COG5183 SSM4 Protein involved 95.5 0.0089 1.9E-07 55.2 2.4 54 133-187 10-70 (1175)
80 KOG0826 Predicted E3 ubiquitin 95.4 0.012 2.5E-07 49.1 2.7 54 131-186 296-349 (357)
81 KOG2114 Vacuolar assembly/sort 95.4 0.0084 1.8E-07 55.5 2.0 42 135-181 840-881 (933)
82 PF08746 zf-RING-like: RING-li 95.4 0.0086 1.9E-07 35.2 1.4 41 138-178 1-43 (43)
83 KOG1645 RING-finger-containing 95.1 0.016 3.4E-07 49.7 2.5 36 149-184 20-57 (463)
84 KOG3268 Predicted E3 ubiquitin 95.0 0.02 4.4E-07 43.8 2.5 53 133-185 163-230 (234)
85 KOG1001 Helicase-like transcri 94.9 0.0063 1.4E-07 56.0 -0.2 46 136-185 455-502 (674)
86 KOG2034 Vacuolar sorting prote 94.8 0.0071 1.5E-07 56.3 -0.2 47 123-170 804-851 (911)
87 KOG3053 Uncharacterized conser 94.7 0.013 2.9E-07 47.2 1.1 52 131-183 16-82 (293)
88 KOG0298 DEAD box-containing he 94.6 0.011 2.3E-07 57.1 0.4 44 135-180 1153-1196(1394)
89 KOG0801 Predicted E3 ubiquitin 94.5 0.012 2.6E-07 44.3 0.4 30 133-162 175-204 (205)
90 KOG1609 Protein involved in mR 93.4 0.062 1.3E-06 44.6 2.7 51 134-184 77-135 (323)
91 PF02891 zf-MIZ: MIZ/SP-RING z 93.4 0.12 2.6E-06 31.3 3.2 44 136-181 3-50 (50)
92 KOG2932 E3 ubiquitin ligase in 93.2 0.033 7.2E-07 46.2 0.7 45 135-183 90-134 (389)
93 KOG1812 Predicted E3 ubiquitin 93.1 0.041 8.8E-07 47.5 1.1 39 134-172 145-184 (384)
94 PF10272 Tmpp129: Putative tra 92.0 0.22 4.9E-06 42.5 4.2 29 158-186 313-354 (358)
95 KOG3161 Predicted E3 ubiquitin 92.0 0.07 1.5E-06 48.3 1.2 40 134-176 10-51 (861)
96 PF07800 DUF1644: Protein of u 91.8 0.24 5.3E-06 37.2 3.7 35 134-170 1-47 (162)
97 KOG0827 Predicted E3 ubiquitin 91.8 0.0082 1.8E-07 51.1 -4.5 51 134-184 195-246 (465)
98 COG5220 TFB3 Cdk activating ki 91.3 0.089 1.9E-06 42.2 1.0 48 134-181 9-62 (314)
99 KOG1100 Predicted E3 ubiquitin 91.2 0.096 2.1E-06 41.4 1.1 40 138-184 161-201 (207)
100 KOG3899 Uncharacterized conser 91.1 0.12 2.5E-06 42.7 1.5 31 156-186 325-368 (381)
101 PF05290 Baculo_IE-1: Baculovi 90.7 0.23 4.9E-06 36.3 2.5 51 134-186 79-135 (140)
102 KOG0802 E3 ubiquitin ligase [P 89.9 0.21 4.5E-06 45.1 2.2 51 132-189 476-526 (543)
103 KOG3002 Zn finger protein [Gen 89.9 0.28 6E-06 41.0 2.7 44 133-183 46-91 (299)
104 KOG0309 Conserved WD40 repeat- 89.6 0.2 4.4E-06 46.3 1.9 26 152-177 1044-1069(1081)
105 KOG2817 Predicted E3 ubiquitin 89.5 0.34 7.3E-06 41.6 3.0 48 134-181 333-383 (394)
106 KOG4362 Transcriptional regula 88.7 0.11 2.3E-06 47.7 -0.5 48 133-183 19-69 (684)
107 KOG4185 Predicted E3 ubiquitin 87.3 0.45 9.7E-06 39.4 2.4 31 152-182 23-54 (296)
108 PF14446 Prok-RING_1: Prokaryo 87.1 1 2.2E-05 27.7 3.2 45 134-182 4-51 (54)
109 KOG1815 Predicted E3 ubiquitin 83.0 0.82 1.8E-05 40.3 2.1 38 133-172 68-105 (444)
110 KOG2066 Vacuolar assembly/sort 82.6 0.48 1E-05 44.1 0.5 44 135-179 784-831 (846)
111 KOG0825 PHD Zn-finger protein 81.8 0.65 1.4E-05 43.3 1.1 50 133-182 94-153 (1134)
112 KOG2068 MOT2 transcription fac 81.4 1.4 3E-05 37.1 2.7 49 136-184 250-299 (327)
113 KOG3039 Uncharacterized conser 79.4 1.8 3.9E-05 35.1 2.7 38 130-170 38-75 (303)
114 PF07975 C1_4: TFIIH C1-like d 78.9 1.4 3E-05 26.8 1.5 42 138-179 2-50 (51)
115 KOG0269 WD40 repeat-containing 78.4 2.6 5.6E-05 39.3 3.7 41 136-177 780-820 (839)
116 KOG4718 Non-SMC (structural ma 76.5 1.5 3.3E-05 34.6 1.5 45 134-180 180-224 (235)
117 COG5109 Uncharacterized conser 74.8 2.3 5.1E-05 35.6 2.2 47 134-180 335-384 (396)
118 PF04710 Pellino: Pellino; In 74.2 1 2.2E-05 38.8 0.0 45 134-181 276-337 (416)
119 PF07191 zinc-ribbons_6: zinc- 74.1 0.23 4.9E-06 32.3 -3.0 41 136-184 2-42 (70)
120 KOG3113 Uncharacterized conser 73.9 3.3 7.2E-05 33.7 2.8 54 133-188 109-163 (293)
121 PF13901 DUF4206: Domain of un 73.0 3 6.5E-05 32.8 2.4 42 134-180 151-197 (202)
122 smart00249 PHD PHD zinc finger 72.3 2.6 5.7E-05 23.8 1.5 31 137-167 1-31 (47)
123 KOG1829 Uncharacterized conser 71.7 1.6 3.4E-05 39.7 0.6 43 134-179 510-557 (580)
124 KOG3579 Predicted E3 ubiquitin 67.8 2.6 5.6E-05 34.8 1.0 37 133-172 266-306 (352)
125 smart00132 LIM Zinc-binding do 66.7 4.2 9E-05 22.1 1.5 38 137-183 1-38 (39)
126 KOG1812 Predicted E3 ubiquitin 65.5 3.6 7.8E-05 35.6 1.5 44 134-178 305-351 (384)
127 KOG3005 GIY-YIG type nuclease 65.0 2 4.4E-05 35.1 -0.1 50 135-184 182-244 (276)
128 PF00412 LIM: LIM domain; Int 63.4 3 6.5E-05 25.2 0.5 21 155-183 17-37 (58)
129 PF06844 DUF1244: Protein of u 63.0 4.8 0.0001 25.8 1.3 12 159-170 11-22 (68)
130 PF00628 PHD: PHD-finger; Int 60.9 3.2 7E-05 24.5 0.3 43 137-179 1-49 (51)
131 KOG2807 RNA polymerase II tran 60.2 7.8 0.00017 32.7 2.5 47 134-180 329-375 (378)
132 TIGR00622 ssl1 transcription f 59.3 10 0.00022 27.0 2.6 44 136-179 56-110 (112)
133 PF10571 UPF0547: Uncharacteri 57.7 6.5 0.00014 20.3 1.1 9 137-145 2-10 (26)
134 KOG0824 Predicted E3 ubiquitin 56.9 3.2 6.9E-05 34.6 -0.3 48 133-182 103-150 (324)
135 PF14169 YdjO: Cold-inducible 55.3 6.6 0.00014 24.6 1.0 14 172-185 39-52 (59)
136 KOG2979 Protein involved in DN 54.2 7.7 0.00017 31.6 1.5 44 134-179 175-220 (262)
137 KOG2169 Zn-finger transcriptio 54.0 15 0.00032 34.1 3.5 47 135-188 306-361 (636)
138 PF01363 FYVE: FYVE zinc finge 53.0 5.6 0.00012 25.2 0.4 37 133-169 7-44 (69)
139 COG5627 MMS21 DNA repair prote 52.9 8.2 0.00018 31.1 1.4 49 133-183 187-239 (275)
140 KOG3842 Adaptor protein Pellin 52.6 18 0.00039 30.5 3.4 52 133-184 339-415 (429)
141 smart00734 ZnF_Rad18 Rad18-lik 51.5 3.4 7.3E-05 21.4 -0.6 9 174-182 3-11 (26)
142 PF04423 Rad50_zn_hook: Rad50 51.3 5.1 0.00011 24.3 0.0 11 174-184 22-32 (54)
143 smart00064 FYVE Protein presen 51.2 7.5 0.00016 24.5 0.8 37 134-170 9-46 (68)
144 PF12773 DZR: Double zinc ribb 48.5 17 0.00037 21.3 2.1 14 173-186 30-43 (50)
145 cd00065 FYVE FYVE domain; Zinc 47.1 15 0.00033 22.0 1.8 35 136-170 3-38 (57)
146 PF10235 Cript: Microtubule-as 46.7 10 0.00022 25.9 1.0 39 135-185 44-82 (90)
147 KOG2071 mRNA cleavage and poly 46.3 12 0.00027 33.9 1.7 36 133-169 511-557 (579)
148 PF02318 FYVE_2: FYVE-type zin 46.3 12 0.00027 26.6 1.4 46 134-180 53-102 (118)
149 PF10497 zf-4CXXC_R1: Zinc-fin 46.2 28 0.0006 24.4 3.1 24 157-180 37-69 (105)
150 PF14569 zf-UDP: Zinc-binding 43.7 37 0.0008 22.5 3.2 50 134-183 8-62 (80)
151 PF13832 zf-HC5HC2H_2: PHD-zin 43.0 15 0.00032 25.5 1.3 35 134-168 54-88 (110)
152 PF13771 zf-HC5HC2H: PHD-like 41.6 17 0.00036 24.1 1.4 34 134-167 35-68 (90)
153 PF14353 CpXC: CpXC protein 40.9 31 0.00068 24.6 2.9 49 136-187 2-53 (128)
154 PF06906 DUF1272: Protein of u 40.8 54 0.0012 20.3 3.4 47 136-185 6-54 (57)
155 PF05605 zf-Di19: Drought indu 40.2 12 0.00026 22.6 0.5 38 135-182 2-41 (54)
156 PF06937 EURL: EURL protein; 38.7 29 0.00062 28.6 2.5 42 135-176 30-74 (285)
157 PF13717 zinc_ribbon_4: zinc-r 38.6 16 0.00035 20.3 0.8 11 136-146 3-13 (36)
158 PF09889 DUF2116: Uncharacteri 38.1 19 0.00041 22.6 1.1 17 171-187 2-18 (59)
159 PF12660 zf-TFIIIC: Putative z 37.8 2.4 5.1E-05 29.5 -3.3 48 136-184 15-67 (99)
160 COG2824 PhnA Uncharacterized Z 37.0 14 0.00029 26.1 0.4 29 136-170 4-32 (112)
161 PF07649 C1_3: C1-like domain; 36.6 30 0.00064 18.1 1.6 29 137-165 2-30 (30)
162 TIGR00373 conserved hypothetic 36.6 25 0.00055 26.4 1.8 38 131-186 105-142 (158)
163 smart00647 IBR In Between Ring 36.2 8.3 0.00018 23.6 -0.7 20 149-168 38-58 (64)
164 COG3813 Uncharacterized protei 36.1 27 0.00058 22.8 1.6 26 157-184 28-53 (84)
165 PF04216 FdhE: Protein involve 36.1 2.8 6.1E-05 34.7 -3.7 44 135-180 172-219 (290)
166 KOG4185 Predicted E3 ubiquitin 35.9 5.9 0.00013 32.7 -1.9 46 135-181 207-265 (296)
167 PLN02189 cellulose synthase 35.2 37 0.00079 33.3 3.0 50 134-183 33-87 (1040)
168 KOG2113 Predicted RNA binding 35.2 1.4E+02 0.0031 25.3 6.1 44 134-182 342-386 (394)
169 KOG1729 FYVE finger containing 34.7 6.4 0.00014 32.8 -1.8 37 136-172 215-251 (288)
170 cd00350 rubredoxin_like Rubred 34.1 34 0.00075 18.4 1.7 8 173-180 18-25 (33)
171 COG4847 Uncharacterized protei 33.6 33 0.00071 23.7 1.8 36 134-170 5-40 (103)
172 PRK06266 transcription initiat 33.2 37 0.00081 26.1 2.3 37 132-186 114-150 (178)
173 KOG4577 Transcription factor L 32.9 11 0.00023 31.4 -0.8 44 135-187 92-135 (383)
174 PF14311 DUF4379: Domain of un 32.1 29 0.00064 20.9 1.3 23 155-178 33-55 (55)
175 PF11809 DUF3330: Domain of un 32.0 15 0.00031 23.7 -0.1 37 134-172 10-51 (70)
176 COG3492 Uncharacterized protei 31.6 26 0.00056 24.0 1.0 13 159-171 42-54 (104)
177 PF03119 DNA_ligase_ZBD: NAD-d 28.4 20 0.00043 18.8 0.0 10 174-183 1-10 (28)
178 PF09723 Zn-ribbon_8: Zinc rib 28.3 9.8 0.00021 21.9 -1.3 26 154-180 9-34 (42)
179 COG2835 Uncharacterized conser 27.6 29 0.00062 21.8 0.7 14 174-187 10-23 (60)
180 PF13240 zinc_ribbon_2: zinc-r 26.7 9.6 0.00021 19.0 -1.3 6 139-144 3-8 (23)
181 PRK01343 zinc-binding protein; 26.7 39 0.00084 21.0 1.1 12 172-183 9-20 (57)
182 PRK03564 formate dehydrogenase 26.0 21 0.00046 30.0 -0.1 45 134-180 186-234 (309)
183 PF11023 DUF2614: Protein of u 26.0 62 0.0013 23.0 2.2 22 167-188 80-101 (114)
184 KOG1245 Chromatin remodeling c 25.8 25 0.00054 35.7 0.3 52 131-182 1104-1159(1404)
185 COG4068 Uncharacterized protei 25.8 42 0.0009 21.0 1.1 17 171-187 7-23 (64)
186 PF09237 GAGA: GAGA factor; I 25.6 20 0.00042 21.9 -0.3 9 174-182 26-34 (54)
187 TIGR01562 FdhE formate dehydro 25.4 16 0.00035 30.6 -0.9 46 135-181 184-233 (305)
188 PRK11827 hypothetical protein; 23.8 29 0.00062 21.8 0.2 18 168-185 4-21 (60)
189 PF09943 DUF2175: Uncharacteri 23.4 67 0.0015 22.4 2.0 33 136-169 3-35 (101)
190 PF10146 zf-C4H2: Zinc finger- 23.4 57 0.0012 26.2 1.8 22 160-181 196-217 (230)
191 KOG4443 Putative transcription 22.7 32 0.0007 31.8 0.4 48 133-180 16-70 (694)
192 COG4647 AcxC Acetone carboxyla 22.7 47 0.001 24.3 1.1 21 139-162 61-81 (165)
193 PF15353 HECA: Headcase protei 22.5 58 0.0013 22.9 1.5 15 156-170 40-54 (107)
194 COG1675 TFA1 Transcription ini 22.3 71 0.0015 24.6 2.1 39 130-186 108-146 (176)
195 KOG3799 Rab3 effector RIM1 and 22.2 22 0.00048 26.2 -0.6 44 132-181 62-116 (169)
196 PLN02638 cellulose synthase A 22.0 82 0.0018 31.1 2.9 50 134-183 16-70 (1079)
197 PRK00418 DNA gyrase inhibitor; 20.8 58 0.0013 20.6 1.1 12 172-183 6-17 (62)
198 TIGR01206 lysW lysine biosynth 20.6 55 0.0012 20.1 1.0 12 174-185 4-15 (54)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=4.7e-17 Score=97.47 Aligned_cols=44 Identities=50% Similarity=1.158 Sum_probs=39.6
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
+.|+||++.|..++.++.++|||.||..||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999997778889999999999999999999999999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.51 E-value=1.3e-14 Score=96.04 Aligned_cols=46 Identities=37% Similarity=1.007 Sum_probs=37.3
Q ss_pred ccCccccccccccC----------CCCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 134 EEDTCPICLEEYDT----------ENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 134 ~~~~C~ICle~~~~----------~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
.++.|+||++.|.. +-++.+.+|||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45569999999921 23457778999999999999999999999998
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-14 Score=120.51 Aligned_cols=51 Identities=39% Similarity=0.989 Sum_probs=46.2
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC-CCccCCcCCccCC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQEMIFDH 186 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCP~Cr~~l~~~~ 186 (189)
+.|.||||+|..++.+++|||+|.||..||..||.+.. .||+||+.+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 58999999999999999999999999999999998875 5999999876653
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.35 E-value=6.4e-13 Score=106.18 Aligned_cols=51 Identities=27% Similarity=0.863 Sum_probs=42.0
Q ss_pred cccCccccccccccCCC-----CeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTEN-----PKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~-----~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
..+..|+||++.+.... -.++++|+|.||..||.+|++.+.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34678999999974322 1356789999999999999999999999999765
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.3e-13 Score=110.24 Aligned_cols=56 Identities=36% Similarity=0.943 Sum_probs=46.3
Q ss_pred CcccCccccccccc-cCCC---------CeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCC
Q 029684 132 SEEEDTCPICLEEY-DTEN---------PKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187 (189)
Q Consensus 132 ~~~~~~C~ICle~~-~~~~---------~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~ 187 (189)
...+..|.||+|++ ...+ ....++|||.||.+|++.|++++++||+||.++.+|+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 35677899999994 3321 12679999999999999999999999999999888764
No 6
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.33 E-value=1.1e-12 Score=88.10 Aligned_cols=53 Identities=38% Similarity=0.955 Sum_probs=43.5
Q ss_pred ccCccccccccccC----------CCCeEEcCCCCcccHHHHHHHhhc---CCCCccCCcCCccCC
Q 029684 134 EEDTCPICLEEYDT----------ENPKLITKCEHHFHLSCILEWNER---SESCPICDQEMIFDH 186 (189)
Q Consensus 134 ~~~~C~ICle~~~~----------~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~~~~ 186 (189)
+++.|.||...|+. .-+++.-.|+|.||.+||.+|+.. +.+||+||+.+.+.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 47789999999863 225567789999999999999985 469999999987753
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.32 E-value=1.2e-12 Score=76.28 Aligned_cols=39 Identities=44% Similarity=1.161 Sum_probs=34.2
Q ss_pred cccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccC
Q 029684 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~C 178 (189)
|+||++.+ .++++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999 4677899999999999999999998899998
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.31 E-value=1.8e-12 Score=79.53 Aligned_cols=47 Identities=34% Similarity=0.805 Sum_probs=40.0
Q ss_pred ccCccccccccccCCCCeEEcCCCCc-ccHHHHHHHhhcCCCCccCCcCCc
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
++..|.||++.. ...++++|||. ||..|+.+|++....||+||+.+.
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 356799999998 44699999999 999999999999999999999874
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.6e-12 Score=104.84 Aligned_cols=57 Identities=35% Similarity=0.806 Sum_probs=50.5
Q ss_pred ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCCC
Q 029684 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTFN 189 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~~ 189 (189)
...+....|.|||+.. .++ ..+||||+||..||.+|...+..||+||..+...+.|+
T Consensus 234 ~i~~a~~kC~LCLe~~--~~p-SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENR--SNP-SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred cCCCCCCceEEEecCC--CCC-CcCcCcchHHHHHHHHHHccccCCCcccccCCCcceee
Confidence 5566778999999998 466 88999999999999999999999999999998887763
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-11 Score=93.30 Aligned_cols=53 Identities=32% Similarity=0.754 Sum_probs=44.4
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~ 185 (189)
.+....|+|||+.+....+ +.++|||+||..||+..++....||+|++.|...
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3455889999999953333 6699999999999999999999999999876544
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.24 E-value=7.5e-12 Score=96.46 Aligned_cols=51 Identities=29% Similarity=0.812 Sum_probs=42.0
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc----------------CCCCccCCcCCccCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----------------SESCPICDQEMIFDH 186 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----------------~~tCP~Cr~~l~~~~ 186 (189)
.++..|+||++.+ .++ ++++|||.||..||.+|+.. ...||+||..+...+
T Consensus 16 ~~~~~CpICld~~--~dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 16 GGDFDCNICLDQV--RDP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCccCCccCCCcC--CCc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 4567899999998 356 77899999999999999852 248999999987654
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.7e-12 Score=100.81 Aligned_cols=51 Identities=25% Similarity=0.802 Sum_probs=45.2
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh-cCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCP~Cr~~l~ 183 (189)
...-.|.|||+.|.-.+..+.+||.|.||..||.+||. .+..||+||..+.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 44567999999997677789999999999999999998 6789999999876
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.20 E-value=1.7e-11 Score=72.58 Aligned_cols=44 Identities=41% Similarity=1.087 Sum_probs=38.2
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-CCCCccCCcCC
Q 029684 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQEM 182 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr~~l 182 (189)
.|+||++.+ .++..+++|||.||..|+..|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 466677779999999999999987 77899999864
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=1.4e-11 Score=72.82 Aligned_cols=38 Identities=39% Similarity=0.970 Sum_probs=29.5
Q ss_pred cccccccccCCCCeEEcCCCCcccHHHHHHHhhcC----CCCccC
Q 029684 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCP~C 178 (189)
|+||++.| .+| +.++|||.||..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~--~~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSE-EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCc-cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 466 889999999999999999864 369987
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-11 Score=96.34 Aligned_cols=53 Identities=32% Similarity=0.817 Sum_probs=45.0
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc---CCCCccCCcCCccCCC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQEMIFDHT 187 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~~~~~ 187 (189)
......|.|||+.- +++ +++.|||.||..||.+|++. ++.||+||..+..++.
T Consensus 44 ~~~~FdCNICLd~a--kdP-VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA--KDP-VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeecccc--CCC-EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 35667899999998 466 88999999999999999986 4479999999887754
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.15 E-value=3.9e-11 Score=71.63 Aligned_cols=44 Identities=36% Similarity=0.875 Sum_probs=38.9
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
.|+||++.|....+..++.|||+||..||..++.....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955667799999999999999999966779999985
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.12 E-value=5.9e-11 Score=69.62 Aligned_cols=39 Identities=46% Similarity=1.226 Sum_probs=34.2
Q ss_pred cccccccccCCCCeEEcCCCCcccHHHHHHHhh--cCCCCccC
Q 029684 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNE--RSESCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~--~~~tCP~C 178 (189)
|+||++.+ .++..+++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999 35656999999999999999998 45589998
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.11 E-value=9.8e-11 Score=74.97 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=42.9
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~ 187 (189)
..|+||++.+ .+| ++++|||.|++.||.+|++.+.+||+|++.+..++.
T Consensus 2 ~~Cpi~~~~~--~~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVM--KDP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcC--CCC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 5799999999 467 778999999999999999988899999998866553
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=99.08 E-value=6.7e-11 Score=92.40 Aligned_cols=54 Identities=30% Similarity=0.717 Sum_probs=40.9
Q ss_pred cCcccCccccccccccCC------CCeEEcCCCCcccHHHHHHHhhcC------CCCccCCcCCcc
Q 029684 131 ASEEEDTCPICLEEYDTE------NPKLITKCEHHFHLSCILEWNERS------ESCPICDQEMIF 184 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~------~~~~~~~C~H~Fh~~CI~~Wl~~~------~tCP~Cr~~l~~ 184 (189)
....+.+|+||+|..... ...++.+|+|.||..||..|.+.+ .+||+||..+.+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 334568899999986211 123677999999999999999753 369999997653
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.97 E-value=5.9e-10 Score=63.59 Aligned_cols=38 Identities=47% Similarity=1.176 Sum_probs=33.0
Q ss_pred cccccccccCCCCeEEcCCCCcccHHHHHHHhh-cCCCCccC
Q 029684 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCP~C 178 (189)
|+||++.. ...+.++|+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999995 4558899999999999999998 56689987
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=6.7e-10 Score=94.85 Aligned_cols=52 Identities=27% Similarity=0.621 Sum_probs=44.7
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~ 185 (189)
..+....|+||++.| .++ ++++|||.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~--~~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFF--DVP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhh--hCc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 345678999999999 366 5799999999999999999888999999987654
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.2e-10 Score=101.35 Aligned_cols=51 Identities=35% Similarity=0.798 Sum_probs=42.8
Q ss_pred cccCccccccccccCCCC--eEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENP--KLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~--~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
..+..|.||+|.+..... ..+++|+|.||..|++.|+++..+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 457889999999943211 588999999999999999999999999999443
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.93 E-value=9.3e-10 Score=72.25 Aligned_cols=54 Identities=30% Similarity=0.628 Sum_probs=43.1
Q ss_pred cCccccccccccC-------------CCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCC
Q 029684 135 EDTCPICLEEYDT-------------ENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 135 ~~~C~ICle~~~~-------------~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
-+.|.||...|.. +-+++.-.|.|.||.+||.+||..+..||++|+.+...+..
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~~ 86 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADGG 86 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEeccc
Confidence 4678887766521 22456678999999999999999999999999998877653
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.82 E-value=3.4e-09 Score=62.69 Aligned_cols=38 Identities=39% Similarity=0.997 Sum_probs=23.6
Q ss_pred cccccccc-cCCCCeEEcCCCCcccHHHHHHHhhcC----CCCc
Q 029684 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERS----ESCP 176 (189)
Q Consensus 138 C~ICle~~-~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCP 176 (189)
|+||++ | +.+++.++|+|||.|+..||.+|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7 456666889999999999999999853 2565
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=8.5e-10 Score=71.84 Aligned_cols=53 Identities=36% Similarity=0.834 Sum_probs=41.1
Q ss_pred ccCccccccccccCC----------CCeEEcCCCCcccHHHHHHHhhcC---CCCccCCcCCccCC
Q 029684 134 EEDTCPICLEEYDTE----------NPKLITKCEHHFHLSCILEWNERS---ESCPICDQEMIFDH 186 (189)
Q Consensus 134 ~~~~C~ICle~~~~~----------~~~~~~~C~H~Fh~~CI~~Wl~~~---~tCP~Cr~~l~~~~ 186 (189)
.++.|.||.-.|+.. -|.++-.|.|.||..||.+|+... ..||+||+.+.+.+
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 445899999998532 244455689999999999999753 48999999987653
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.9e-09 Score=72.67 Aligned_cols=69 Identities=28% Similarity=0.590 Sum_probs=51.2
Q ss_pred CCcchhcccccc---ccCcccCcccccccccc--------------CCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 118 PRKSEVSQLNVF---AASEEEDTCPICLEEYD--------------TENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~C~ICle~~~--------------~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
.++++++|-... .-+..-+.|.||..-+- .+-.+..-.|.|.||..||.+|++.+..||+|.+
T Consensus 26 ~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 26 KKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred CcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 556677777665 34456788999975431 1112455679999999999999999999999999
Q ss_pred CCccCC
Q 029684 181 EMIFDH 186 (189)
Q Consensus 181 ~l~~~~ 186 (189)
...+.+
T Consensus 106 eW~~qr 111 (114)
T KOG2930|consen 106 EWVFQR 111 (114)
T ss_pred ceeEee
Confidence 877654
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.9e-09 Score=82.10 Aligned_cols=52 Identities=37% Similarity=0.806 Sum_probs=43.5
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHH-HhhcCCC-CccCCcCCccCCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE-WNERSES-CPICDQEMIFDHT 187 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~-Wl~~~~t-CP~Cr~~l~~~~~ 187 (189)
+.+..|.||++.. ..+ ..++|||+||..||.. |-.++.. ||+||+.....+.
T Consensus 213 ~~d~kC~lC~e~~--~~p-s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEP--EVP-SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeeccc--CCc-ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 5678899999998 344 8899999999999999 9777665 9999998766554
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.67 E-value=1.7e-08 Score=66.79 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=40.0
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-CCCCccCCcCCccCCC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQEMIFDHT 187 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr~~l~~~~~ 187 (189)
++..|+|+.+.+ .+| +++++||.|.+.+|..|+.. ..+||++++.+..++.
T Consensus 3 ~~f~CpIt~~lM--~dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELM--RDP-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB---SSE-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHh--hCc-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 467899999999 477 77899999999999999998 7899999998877653
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.64 E-value=3.1e-08 Score=60.34 Aligned_cols=42 Identities=36% Similarity=0.944 Sum_probs=33.4
Q ss_pred ccccccccccCCCCeEEcCCC-----CcccHHHHHHHhhcC--CCCccCC
Q 029684 137 TCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERS--ESCPICD 179 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~--~tCP~Cr 179 (189)
.|.||++..+.+++ .+.||. |.||..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~-l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP-LVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe-eEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994444455 678985 999999999999665 4899995
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.4e-08 Score=87.89 Aligned_cols=49 Identities=39% Similarity=0.796 Sum_probs=40.2
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC-----CCCccCCcCCccCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-----ESCPICDQEMIFDH 186 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-----~tCP~Cr~~l~~~~ 186 (189)
+..|||||+.. .-..++.|||+||..||..+|... ..||+||..|...+
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 77899999998 333667799999999999988754 38999999887654
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.60 E-value=1.2e-08 Score=84.12 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=43.0
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
+.-..|.||.+.| +-.++++|+|.||.-||+..|..+..||.|+..+..
T Consensus 21 D~lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHh---cCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 4567899999999 444889999999999999999999999999987654
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.58 E-value=1.1e-08 Score=87.02 Aligned_cols=49 Identities=41% Similarity=0.945 Sum_probs=40.1
Q ss_pred cccCccccccccccC-CCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
.+-..|+||||.++. ...++.+.|.|.||..|+..|... +||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--cChhhhhhcC
Confidence 455689999999954 345577889999999999999755 9999998655
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.50 E-value=4.8e-08 Score=79.18 Aligned_cols=48 Identities=27% Similarity=0.537 Sum_probs=42.1
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
+..+.|.||-+.|. .+ ..++|||.||.-||++.|..+..||+||....
T Consensus 23 Ds~lrC~IC~~~i~--ip-~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS--IP-CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee--cc-eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 45678999999993 44 88999999999999999999999999998654
No 34
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.5e-08 Score=82.63 Aligned_cols=51 Identities=29% Similarity=0.808 Sum_probs=40.0
Q ss_pred cccCccccccccccC---CCC-----------eEEcCCCCcccHHHHHHHhh-cCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDT---ENP-----------KLITKCEHHFHLSCILEWNE-RSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~---~~~-----------~~~~~C~H~Fh~~CI~~Wl~-~~~tCP~Cr~~l~ 183 (189)
+....|+||+..++. +.+ -.++||.|+||..|+..||. .+-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 345679999988732 111 25579999999999999999 5669999999875
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.35 E-value=5.5e-08 Score=63.76 Aligned_cols=51 Identities=31% Similarity=0.742 Sum_probs=25.1
Q ss_pred cCccccccccccC--CCCeEE---cCCCCcccHHHHHHHhhcC-----------CCCccCCcCCccC
Q 029684 135 EDTCPICLEEYDT--ENPKLI---TKCEHHFHLSCILEWNERS-----------ESCPICDQEMIFD 185 (189)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~---~~C~H~Fh~~CI~~Wl~~~-----------~tCP~Cr~~l~~~ 185 (189)
+..|.||+..+.. +.+.++ ..|++.||..||.+||... .+||.|++.|...
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 4579999998742 223222 3689999999999999731 2699999988653
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.7e-07 Score=76.18 Aligned_cols=46 Identities=41% Similarity=0.908 Sum_probs=40.0
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
.++...|+||++.|. .+ .+++|+|.||..||..|+.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~--~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFR--EP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhh--cC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 357788999999994 55 89999999999999999985568999994
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.28 E-value=1.2e-07 Score=60.12 Aligned_cols=49 Identities=31% Similarity=0.698 Sum_probs=25.8
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
+-..|++|.+.+ .+|+.+..|.|.||..||..-+.. .||+|+.+.-..|
T Consensus 6 ~lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD 54 (65)
T PF14835_consen 6 ELLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQD 54 (65)
T ss_dssp HTTS-SSS-S----SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS
T ss_pred HhcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHH
Confidence 456899999999 588888999999999999885543 5999998765444
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.7e-07 Score=73.37 Aligned_cols=53 Identities=25% Similarity=0.669 Sum_probs=41.8
Q ss_pred cCcccCccccccccccCCC-------CeEEcCCCCcccHHHHHHHhh--cCCCCccCCcCCc
Q 029684 131 ASEEEDTCPICLEEYDTEN-------PKLITKCEHHFHLSCILEWNE--RSESCPICDQEMI 183 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~-------~~~~~~C~H~Fh~~CI~~Wl~--~~~tCP~Cr~~l~ 183 (189)
...++..|.||-..++... ....+.|+|.||..||+-|-. .+++||.|+..+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3456778999998884322 447899999999999999964 5779999987654
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-06 Score=72.43 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=41.3
Q ss_pred cccCccccccccccCCCCeEEcCCCCc-ccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
+....|.|||.+. ...+++||.|. .|..|.+...-+.+.||+||+.+.
T Consensus 288 ~~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4467899999998 45599999996 899999998878889999999864
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-06 Score=73.55 Aligned_cols=52 Identities=35% Similarity=0.884 Sum_probs=39.6
Q ss_pred cccCccccccccccCCC-----CeEEcCCCCcccHHHHHHHh--hc-----CCCCccCCcCCcc
Q 029684 133 EEEDTCPICLEEYDTEN-----PKLITKCEHHFHLSCILEWN--ER-----SESCPICDQEMIF 184 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~-----~~~~~~C~H~Fh~~CI~~Wl--~~-----~~tCP~Cr~~l~~ 184 (189)
..+.+|.||++...... -.++.+|.|.||..||..|. .+ ++.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45778999999984322 12446799999999999998 34 4689999986543
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.1e-07 Score=75.62 Aligned_cols=55 Identities=24% Similarity=0.643 Sum_probs=43.9
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-CCCCccCCcCCccCCCC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQEMIFDHTF 188 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr~~l~~~~~~ 188 (189)
...+..|+|||+.+. ..+....|.|.||..||..-|.. .++||.||+.+....+|
T Consensus 40 ~~~~v~c~icl~llk--~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 40 FDIQVICPICLSLLK--KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hhhhhccHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence 345678999999993 44455679999999999988865 56999999988766554
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.07 E-value=8.8e-07 Score=81.56 Aligned_cols=54 Identities=30% Similarity=0.805 Sum_probs=40.9
Q ss_pred cCcccCccccccccccCCCC----eEEcCCCCcccHHHHHHHhhcC--CCCccCCcCCcc
Q 029684 131 ASEEEDTCPICLEEYDTENP----KLITKCEHHFHLSCILEWNERS--ESCPICDQEMIF 184 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~----~~~~~C~H~Fh~~CI~~Wl~~~--~tCP~Cr~~l~~ 184 (189)
..+...+|+||+..+..-+. .+-..|.|.||..|+.+|+..+ .+||+||..+.+
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 34566789999988742121 2445689999999999999864 499999988765
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.96 E-value=6e-06 Score=51.83 Aligned_cols=43 Identities=37% Similarity=0.796 Sum_probs=30.8
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc--CCCCcc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPI 177 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCP~ 177 (189)
.-...|||.+..| .+|+....|||.|-+..|.+|+++ ...||+
T Consensus 9 ~~~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999 599888999999999999999954 448998
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.7e-06 Score=77.04 Aligned_cols=51 Identities=27% Similarity=0.626 Sum_probs=43.5
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-CCCCccCCcCCccCCC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQEMIFDHT 187 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr~~l~~~~~ 187 (189)
.-..|+.|-..+ ..+++++|+|.||..||..-+.. ...||.|...|-..|.
T Consensus 642 ~~LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 457899999887 45589999999999999998864 5699999999988774
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.88 E-value=3.7e-06 Score=68.63 Aligned_cols=53 Identities=23% Similarity=0.728 Sum_probs=42.9
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh------------------c-----CCCCccCCcCCccC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE------------------R-----SESCPICDQEMIFD 185 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~------------------~-----~~tCP~Cr~~l~~~ 185 (189)
...-.|.|||--|......+.+.|.|.||..|+.++|. . ...||+||..|..+
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 44567999999997777789999999999999987654 1 23799999987654
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=3.8e-06 Score=51.37 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=36.6
Q ss_pred cCccccccccccCCCCeEEcCCCCc-ccHHHHHHHhh-cCCCCccCCcCCc
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNE-RSESCPICDQEMI 183 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~-~~~tCP~Cr~~l~ 183 (189)
+++|.||+|... +. ++-.|||. .|..|-.+.++ .+..||+||.++.
T Consensus 7 ~dECTICye~pv--ds-VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV--DS-VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc--hH-HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 378999999872 33 67789995 79999877666 6789999999764
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.80 E-value=3.8e-06 Score=76.16 Aligned_cols=54 Identities=22% Similarity=0.501 Sum_probs=43.6
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
.....|+||+..+..+......+|+|.||.+||..|-....+||+||..|..-.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 345679999998854444455789999999999999999999999999876543
No 48
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.79 E-value=5.5e-06 Score=68.47 Aligned_cols=52 Identities=35% Similarity=0.647 Sum_probs=45.0
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
.....|.+|-..|. +...++.|-|.||++||.+.|+...+||+|+..+....
T Consensus 13 n~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 46788999999993 55578889999999999999999999999998776654
No 49
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.78 E-value=1.1e-05 Score=69.65 Aligned_cols=54 Identities=33% Similarity=0.788 Sum_probs=45.6
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
+++..|+||...+ .++...+.|||.||..|+..|+..+..||.|+..+...+.+
T Consensus 19 ~~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 5678899999999 46644479999999999999999999999999887766543
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.70 E-value=2.3e-05 Score=75.10 Aligned_cols=53 Identities=34% Similarity=0.738 Sum_probs=43.7
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC----------CCCccCCcCCc
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----------ESCPICDQEMI 183 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----------~tCP~Cr~~l~ 183 (189)
..+.++.|-||+.+--...|.+.+.|+|+||..|.++.|+++ -+||+|+..|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346788999999887667788999999999999998776643 18999998763
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.8e-05 Score=66.84 Aligned_cols=49 Identities=29% Similarity=0.725 Sum_probs=42.5
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
..+..|.||+..+ ..+ +.++|||.||..||.+-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l--~~p-v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRAL--YPP-VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhc--CCC-ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4578899999998 355 777999999999999999988899999998763
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.58 E-value=2.7e-05 Score=66.01 Aligned_cols=51 Identities=27% Similarity=0.672 Sum_probs=41.7
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc--CCCCccCCcCCccCCCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPICDQEMIFDHTF 188 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCP~Cr~~l~~~~~~ 188 (189)
-..|-||-|.- ..+.+-+|||..|..|+..|-.. ..+||.||..|.-.+.+
T Consensus 369 FeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 369 FELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 34699998874 56688999999999999999854 45999999988766543
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.53 E-value=3e-05 Score=59.92 Aligned_cols=45 Identities=29% Similarity=0.812 Sum_probs=39.2
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l 182 (189)
...|.||.+.| +.| +++.|||+||..|..+-++.-..|-+|.+..
T Consensus 196 PF~C~iCKkdy--~sp-vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDY--ESP-VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhc--cch-hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 45899999999 355 8899999999999999888888999998754
No 54
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.49 E-value=5.5e-05 Score=45.55 Aligned_cols=40 Identities=38% Similarity=0.942 Sum_probs=28.4
Q ss_pred cccccccccCCCCeEEcCCC-----CcccHHHHHHHhhc--CCCCccC
Q 029684 138 CPICLEEYDTENPKLITKCE-----HHFHLSCILEWNER--SESCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~--~~tCP~C 178 (189)
|-||++.....+ ..+.||+ ...|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999986544 4778885 47899999999984 4579887
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00013 Score=59.09 Aligned_cols=51 Identities=29% Similarity=0.688 Sum_probs=42.3
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh--cCCCCccCCcCCc
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE--RSESCPICDQEMI 183 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~--~~~tCP~Cr~~l~ 183 (189)
....+.+|++|-+.. ..|-+..+|+|+||..||..-+. .+.+||.|.....
T Consensus 235 ~~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678899999987 58888899999999999998765 3579999987654
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.42 E-value=3.6e-05 Score=65.10 Aligned_cols=50 Identities=36% Similarity=0.666 Sum_probs=40.1
Q ss_pred cCcccCccccccccccCCC-CeEEcCCCCcccHHHHHHHhhcCC--CCccCCc
Q 029684 131 ASEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNERSE--SCPICDQ 180 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~Cr~ 180 (189)
..+-+..|..|=+.+...+ ..-.+||.|+||..|+.+.++.+. +||-||+
T Consensus 361 ~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 361 VEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456788999999994333 336799999999999999997754 8999994
No 57
>PHA02862 5L protein; Provisional
Probab=97.38 E-value=0.00011 Score=54.06 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=36.1
Q ss_pred cCccccccccccCCCCeEEcCCC-----CcccHHHHHHHhhcC--CCCccCCcCCccC
Q 029684 135 EDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERS--ESCPICDQEMIFD 185 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~--~tCP~Cr~~l~~~ 185 (189)
.+.|-||++.-+ +. .-||. ...|+.|+.+|+..+ ..|++|+.++...
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 467999999863 22 35664 678999999999754 4899999987654
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00016 Score=60.51 Aligned_cols=49 Identities=24% Similarity=0.610 Sum_probs=42.5
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
..++..|+||.-.- ...+..||+|.-|+.||.+.|...+.|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 35677899998775 44588999999999999999999999999988765
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.25 E-value=0.00013 Score=53.25 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=30.1
Q ss_pred cCccccccccccCCCCeEEcCCC------CcccHHHHHHHh
Q 029684 135 EDTCPICLEEYDTENPKLITKCE------HHFHLSCILEWN 169 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~------H~Fh~~CI~~Wl 169 (189)
..+|.||++.+.....++...|+ |.||..|+++|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 56799999999655677888887 999999999993
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.23 E-value=0.00014 Score=63.81 Aligned_cols=55 Identities=25% Similarity=0.631 Sum_probs=44.2
Q ss_pred ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-----CCCCccCCcCCccCCC
Q 029684 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQEMIFDHT 187 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~tCP~Cr~~l~~~~~ 187 (189)
+....+..|.+|-+.- +..+...|.|.||.-||.+++.. ..+||+|-..+.+|.+
T Consensus 531 ~enk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred ccccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 4455677899999886 33488999999999999988763 3599999999887753
No 61
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00012 Score=59.79 Aligned_cols=45 Identities=33% Similarity=0.720 Sum_probs=39.8
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l 182 (189)
.+.|-||...| .++ +++.|+|.||..|...-++....|.+|.+.+
T Consensus 241 Pf~c~icr~~f--~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYF--YRP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Ccccccccccc--ccc-hhhcCCceeehhhhccccccCCcceeccccc
Confidence 45699999999 356 8899999999999999999989999998765
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.19 E-value=0.00032 Score=52.57 Aligned_cols=51 Identities=33% Similarity=0.724 Sum_probs=38.2
Q ss_pred cCcccCccccccccccCCCCeEEcCCC--C---cccHHHHHHHhhcCC--CCccCCcCCccC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCE--H---HFHLSCILEWNERSE--SCPICDQEMIFD 185 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~--H---~Fh~~CI~~Wl~~~~--tCP~Cr~~l~~~ 185 (189)
.+..+..|-||.+... . ...||. . ..|.+|+++|+..++ .|++|++.+...
T Consensus 4 ~s~~~~~CRIC~~~~~---~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 4 VSLMDKCCWICKDEYD---V-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred cCCCCCeeEecCCCCC---C-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4567788999998863 2 235664 3 679999999998654 899999877654
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0011 Score=53.08 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=47.3
Q ss_pred cccCccccccccccCCCC-eEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCC
Q 029684 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
.....|+||.+.+...-+ +++-+|||+|+..|+.+.+.....||+|.+++..++.|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 356789999999954444 36678999999999999999889999999999888765
No 64
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00015 Score=59.25 Aligned_cols=42 Identities=26% Similarity=0.664 Sum_probs=33.9
Q ss_pred cCccccccccccCCCCeEEcCCCCc-ccHHHHHHHhhcCCCCccCCcCCc
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
...|.||++.. ...+.|+|||. -|..|-++ -..||+||+-|.
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 67899999998 55699999995 58888755 348999998764
No 65
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.78 E-value=0.0015 Score=39.26 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=23.3
Q ss_pred cccccccccCCCC-eEEcCCCCcccHHHHHHHhh-cCCCCccCCcCC
Q 029684 138 CPICLEEYDTENP-KLITKCEHHFHLSCILEWNE-RSESCPICDQEM 182 (189)
Q Consensus 138 C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~-~~~tCP~Cr~~l 182 (189)
|++|.++++..+. ...=+||+.+|+.|....++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999954333 23345899999999999886 477999999864
No 66
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.69 E-value=0.0018 Score=52.92 Aligned_cols=56 Identities=21% Similarity=0.529 Sum_probs=44.7
Q ss_pred CcccCccccccccccCCCC-eEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCC
Q 029684 132 SEEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
......|||...+|..... +.+.+|||+|...+|.+.- ....||+|.+++...|.|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEE
Confidence 4677899999999944333 4667999999999999973 456899999999877754
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.62 E-value=0.00081 Score=47.06 Aligned_cols=34 Identities=26% Similarity=0.586 Sum_probs=28.1
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHH
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCIL 166 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~ 166 (189)
..++..|++|-..+.. ....+.||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3556779999999953 556889999999999975
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0015 Score=55.75 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=32.4
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
.-..|.||+++.....-...+||+|+||+.|++.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 3467999999997667779999999999999999886
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.55 E-value=0.0012 Score=54.51 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=32.1
Q ss_pred CccccccccccCCC----C-eEEcCCCCcccHHHHHHHhhcC---CCCccCCc
Q 029684 136 DTCPICLEEYDTEN----P-KLITKCEHHFHLSCILEWNERS---ESCPICDQ 180 (189)
Q Consensus 136 ~~C~ICle~~~~~~----~-~~~~~C~H~Fh~~CI~~Wl~~~---~tCP~Cr~ 180 (189)
..|.||++...... . .++..|.|.||..||..|...+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999874321 1 1556799999999999998753 35555543
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.40 E-value=0.0034 Score=57.98 Aligned_cols=51 Identities=37% Similarity=0.821 Sum_probs=38.0
Q ss_pred ccCcccCccccccccccCCCCe-EEcCCCCcccHHHHHHHhhcCC-------CCccCCc
Q 029684 130 AASEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSE-------SCPICDQ 180 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~~~-------tCP~Cr~ 180 (189)
.......+|.||++.+....++ .-..|-|+||+.||++|-.... .||-|..
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3446678899999999655553 1134779999999999976422 6999983
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0021 Score=54.05 Aligned_cols=45 Identities=29% Similarity=0.710 Sum_probs=33.7
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
...+.|.||+++. .....++|||.-| |+..- +...+||+||+.|.
T Consensus 303 ~~p~lcVVcl~e~---~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEP---KSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCc---cceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 4456799999998 3368999999877 76554 33345999998764
No 72
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0039 Score=49.31 Aligned_cols=54 Identities=26% Similarity=0.551 Sum_probs=43.3
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC--------CCCccCCcCCccC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--------ESCPICDQEMIFD 185 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~--------~tCP~Cr~~l~~~ 185 (189)
..+-...|..|-..+..++. +.+-|-|.||..|+.+|--.- ..||-|.++|...
T Consensus 46 DsDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred hcCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 34556679999998876666 789999999999999997632 2799999988653
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.31 E-value=0.0039 Score=52.28 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=40.5
Q ss_pred ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHH--hhcCCCCccCCcCC
Q 029684 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW--NERSESCPICDQEM 182 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W--l~~~~tCP~Cr~~l 182 (189)
+..++...|-||-+.+ .-..++||+|..|.-|-.+. |...+.|++||...
T Consensus 56 dtDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4566777899999988 44588999999999998653 56678999999753
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.18 E-value=0.0029 Score=38.99 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=35.7
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~ 187 (189)
...|-.|...- ....+++|||..+..|..-| +-.-||+|.+++..+++
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 34455555543 34488999999999997654 55689999999988775
No 75
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.17 E-value=0.0029 Score=51.89 Aligned_cols=46 Identities=35% Similarity=0.649 Sum_probs=38.1
Q ss_pred cCccccccccc-cCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 135 EDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 135 ~~~C~ICle~~-~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
...||||.+.+ .....+..++|||..|..|+.+.....-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34499999988 33445588999999999999998777789999987
No 76
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.87 E-value=0.003 Score=37.64 Aligned_cols=34 Identities=32% Similarity=0.707 Sum_probs=24.6
Q ss_pred EEcCCC-CcccHHHHHHHhhcCCCCccCCcCCccC
Q 029684 152 LITKCE-HHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 152 ~~~~C~-H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~ 185 (189)
.+..|. |..|..|+...+.++..||+|.++++..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 567786 9999999999999999999999988753
No 77
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.59 E-value=0.0094 Score=49.93 Aligned_cols=53 Identities=25% Similarity=0.604 Sum_probs=38.7
Q ss_pred cCcccCccccccccccCCCC-eEEcCCCCcccHHHHHHHhhc-CCCCccCCcCCc
Q 029684 131 ASEEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNER-SESCPICDQEMI 183 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr~~l~ 183 (189)
.+++++.|+.|+|+++..+. ...-+||-..|.-|+...-+. ...||-||+...
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 45677789999999965444 244578988888887665443 569999998654
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.53 E-value=0.0091 Score=49.20 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=36.9
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhc-CCCCccCC-cCCccC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICD-QEMIFD 185 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCP~Cr-~~l~~~ 185 (189)
..|+.|...+ .+++...-|+|.||.+||...|.. ...||.|. +.++.|
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 7899999988 477555468999999999987765 55999994 444443
No 79
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=95.49 E-value=0.0089 Score=55.18 Aligned_cols=54 Identities=35% Similarity=0.810 Sum_probs=43.5
Q ss_pred cccCccccccccccCCCCeEEcCCC-----CcccHHHHHHHhhcCC--CCccCCcCCccCCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERSE--SCPICDQEMIFDHT 187 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~~--tCP~Cr~~l~~~~~ 187 (189)
+++..|.||..+-..++| ..-||. ...|.+|+.+|+.-+. .|-+|..++.+.+.
T Consensus 10 ~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 456789999988866777 556765 4689999999998654 79999999888764
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.012 Score=49.13 Aligned_cols=54 Identities=24% Similarity=0.636 Sum_probs=45.0
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
...+...|+||+..- .|+.++.--|-+||..||-..+...+.||+=..++.+++
T Consensus 296 l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDH 349 (357)
T ss_pred CCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHH
Confidence 345567899999988 588777778999999999999999999999877776554
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.0084 Score=55.51 Aligned_cols=42 Identities=26% Similarity=0.718 Sum_probs=35.6
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~ 181 (189)
...|.+|--.+ +-|.+...|||.||.+|+. .....||-|+..
T Consensus 840 ~skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 35799998888 4788999999999999997 445689999873
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.41 E-value=0.0086 Score=35.22 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=22.1
Q ss_pred cccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC--CCccC
Q 029684 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPIC 178 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~C 178 (189)
|.+|.+....+..-....|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667877774333222235888999999999998755 79987
No 83
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.016 Score=49.72 Aligned_cols=36 Identities=25% Similarity=0.664 Sum_probs=28.4
Q ss_pred CCeEEcCCCCcccHHHHHHHhhc--CCCCccCCcCCcc
Q 029684 149 NPKLITKCEHHFHLSCILEWNER--SESCPICDQEMIF 184 (189)
Q Consensus 149 ~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCP~Cr~~l~~ 184 (189)
..++.+.|||.|...||.+|+.. ...||.|...-.+
T Consensus 20 hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 20 HRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred eEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 45578899999999999999963 2389999765433
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.02 Score=43.79 Aligned_cols=53 Identities=25% Similarity=0.599 Sum_probs=36.5
Q ss_pred cccCccccccccccCC----CCeEEcCCCCcccHHHHHHHhhc------C-----CCCccCCcCCccC
Q 029684 133 EEEDTCPICLEEYDTE----NPKLITKCEHHFHLSCILEWNER------S-----ESCPICDQEMIFD 185 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~----~~~~~~~C~H~Fh~~CI~~Wl~~------~-----~tCP~Cr~~l~~~ 185 (189)
++--.|.||+-.--.+ ...-...||.-||.-|+..||.. + ..||.|.+++...
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4445688887654211 11234679999999999999973 1 2799999887653
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.95 E-value=0.0063 Score=55.99 Aligned_cols=46 Identities=30% Similarity=0.762 Sum_probs=38.2
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC--CCccCCcCCccC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQEMIFD 185 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~Cr~~l~~~ 185 (189)
..|.||++ . +..+++.|+|.||..|+..-++... .||+||..+..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 4 5669999999999999999887643 699999876544
No 86
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.0071 Score=56.25 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=35.5
Q ss_pred hcccccc-ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh
Q 029684 123 VSQLNVF-AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 123 ~~~~~~~-~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
..++... ...+.++.|.+|...+.. .+..+.+|||.||..||.+-..
T Consensus 804 ~~~l~~ry~v~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 804 ISKLRQRYRVLEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred HHHhhcceEEecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 3344333 456788899999988853 5779999999999999986543
No 87
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.013 Score=47.17 Aligned_cols=52 Identities=33% Similarity=0.744 Sum_probs=37.0
Q ss_pred cCcccCccccccccccCCCCe--EEcCCC-----CcccHHHHHHHhhcCC--------CCccCCcCCc
Q 029684 131 ASEEEDTCPICLEEYDTENPK--LITKCE-----HHFHLSCILEWNERSE--------SCPICDQEMI 183 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~--~~~~C~-----H~Fh~~CI~~Wl~~~~--------tCP~Cr~~l~ 183 (189)
..+.+..|=||+..=++ ++. -+-||. |-.|.+||.+|+..+. +||.|+....
T Consensus 16 ~~e~eR~CWiCF~TdeD-n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDED-NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcc-cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34567789999976532 222 345663 8899999999997543 7999987654
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.59 E-value=0.011 Score=57.07 Aligned_cols=44 Identities=34% Similarity=0.653 Sum_probs=38.9
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
...|.||++.+ .+...+..|||.+|..|+..|+..+..||+|+.
T Consensus 1153 ~~~c~ic~dil--~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDIL--RNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHH--HhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34899999999 345588999999999999999999999999973
No 89
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.012 Score=44.33 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=26.8
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccH
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHL 162 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~ 162 (189)
++.-+|.||||++..++.+..|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455679999999999999999999999986
No 90
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.45 E-value=0.062 Score=44.58 Aligned_cols=51 Identities=33% Similarity=0.666 Sum_probs=38.3
Q ss_pred ccCccccccccccCCCC-eEEcCCC-----CcccHHHHHHHhh--cCCCCccCCcCCcc
Q 029684 134 EEDTCPICLEEYDTENP-KLITKCE-----HHFHLSCILEWNE--RSESCPICDQEMIF 184 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~-~~~~~C~-----H~Fh~~CI~~Wl~--~~~tCP~Cr~~l~~ 184 (189)
++..|.||.++....+. ....+|. +..|..|+..|+. .+..|.+|...+..
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 35679999998743321 3677875 6789999999998 45589999886544
No 91
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.36 E-value=0.12 Score=31.30 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=22.5
Q ss_pred CccccccccccCCCCeEEcCCCCcc--cHHHHHHHhhcCC--CCccCCcC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHF--HLSCILEWNERSE--SCPICDQE 181 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~F--h~~CI~~Wl~~~~--tCP~Cr~~ 181 (189)
..|+|-...+ ..|++...|.|.- -+.-.....++.. .||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4699999888 5788999999974 4332222222222 79999864
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.033 Score=46.16 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=30.3
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
.-.|--|=-.+ ..--++.+|.|.||++|... ...+.||.|...+.
T Consensus 90 VHfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 34566664333 12237899999999999643 44669999976554
No 93
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.041 Score=47.53 Aligned_cols=39 Identities=28% Similarity=0.632 Sum_probs=29.7
Q ss_pred ccCcccccc-ccccCCCCeEEcCCCCcccHHHHHHHhhcC
Q 029684 134 EEDTCPICL-EEYDTENPKLITKCEHHFHLSCILEWNERS 172 (189)
Q Consensus 134 ~~~~C~ICl-e~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (189)
....|.||+ +....+.......|+|.||..|+++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 456899999 444433444578899999999999988854
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.99 E-value=0.22 Score=42.48 Aligned_cols=29 Identities=21% Similarity=0.597 Sum_probs=22.1
Q ss_pred CcccHHHHHHHhhc-------------CCCCccCCcCCccCC
Q 029684 158 HHFHLSCILEWNER-------------SESCPICDQEMIFDH 186 (189)
Q Consensus 158 H~Fh~~CI~~Wl~~-------------~~tCP~Cr~~l~~~~ 186 (189)
-.+|.+|+-+||-. +-+||+||+.+-.-|
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 35688999998852 338999999987654
No 95
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.07 Score=48.33 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=30.6
Q ss_pred ccCccccccccccC--CCCeEEcCCCCcccHHHHHHHhhcCCCCc
Q 029684 134 EEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCP 176 (189)
Q Consensus 134 ~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP 176 (189)
+-..|.||+.+|.. -.+ +.+.|||..|..|+.....+ +||
T Consensus 10 ~~l~c~ic~n~f~~~~~~P-vsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEP-VSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCc-ccccccchHHHHHHHhHhhc--cCC
Confidence 34579999988832 234 77899999999999886544 777
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.85 E-value=0.24 Score=37.25 Aligned_cols=35 Identities=34% Similarity=0.781 Sum_probs=20.8
Q ss_pred ccCccccccccccCCCCeEEc-----------CCCC-cccHHHHHHHhh
Q 029684 134 EEDTCPICLEEYDTENPKLIT-----------KCEH-HFHLSCILEWNE 170 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~-----------~C~H-~Fh~~CI~~Wl~ 170 (189)
++..|+||||.. .|.+.++ -|+. .-|.-|+.+.-+
T Consensus 1 ed~~CpICme~P--HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHP--HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCC--CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356799999998 3442111 1221 347789987654
No 97
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.0082 Score=51.06 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=41.6
Q ss_pred ccCccccccccccCC-CCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 134 EEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 134 ~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
-...|.||.+.|... +....+-|||.+|..||.+|+.....||.|+..+..
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 345799999988433 344567899999999999999998899999988754
No 98
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.26 E-value=0.089 Score=42.20 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=35.0
Q ss_pred ccCccccccccc--cCCCCeEEcC-CCCcccHHHHHHHhhcCC-CCc--cCCcC
Q 029684 134 EEDTCPICLEEY--DTENPKLITK-CEHHFHLSCILEWNERSE-SCP--ICDQE 181 (189)
Q Consensus 134 ~~~~C~ICle~~--~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~~-tCP--~Cr~~ 181 (189)
.+..||||..+- .+.-...+-| |-|..|.+|+.+.|.+-. .|| -|.+-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 455899999764 3333334445 999999999999998744 899 77553
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.096 Score=41.42 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=30.8
Q ss_pred cccccccccCCCCeEEcCCCCc-ccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 138 CPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
|-+|-+.- ..+.++||.|+ +|..|-.. ..+||+|+.....
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 99998885 56899999985 78888533 4479999876543
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=0.12 Score=42.69 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHhh-------------cCCCCccCCcCCccCC
Q 029684 156 CEHHFHLSCILEWNE-------------RSESCPICDQEMIFDH 186 (189)
Q Consensus 156 C~H~Fh~~CI~~Wl~-------------~~~tCP~Cr~~l~~~~ 186 (189)
|.-..|.+|+.+|+. .+-+||+||+.+-+.|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 446788999998875 3458999999886654
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.66 E-value=0.23 Score=36.31 Aligned_cols=51 Identities=18% Similarity=0.436 Sum_probs=37.5
Q ss_pred ccCccccccccccCCCCeEEcC---CCCcccHHHHHHHhhc---CCCCccCCcCCccCC
Q 029684 134 EEDTCPICLEEYDTENPKLITK---CEHHFHLSCILEWNER---SESCPICDQEMIFDH 186 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~---C~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~~~~ 186 (189)
.-.+|.||.|.-. +...+-| ||-..|..|-...|+. ...||+|+.++....
T Consensus 79 ~lYeCnIC~etS~--ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSA--EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccc--hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 5678999999874 2223322 8999999988776664 458999999886543
No 102
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.21 Score=45.14 Aligned_cols=51 Identities=35% Similarity=0.763 Sum_probs=42.3
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCCC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTFN 189 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~~ 189 (189)
.+..+.|.||+++. ..+.++|. |.-|+.+|+..+..||+|++.+..++..|
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS 526 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence 35667899999997 33667777 89999999999999999999988887654
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.86 E-value=0.28 Score=40.98 Aligned_cols=44 Identities=30% Similarity=0.658 Sum_probs=33.9
Q ss_pred cccCccccccccccCCCCeEEcCC--CCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKC--EHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C--~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
.+-..||||.+.+. .| +..| ||.-|..|=. +.+..||.||.+|.
T Consensus 46 ~~lleCPvC~~~l~--~P--i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS--PP--IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc--cc--ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34567999999993 44 4556 7999999965 45778999999876
No 104
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.57 E-value=0.2 Score=46.29 Aligned_cols=26 Identities=35% Similarity=0.864 Sum_probs=23.1
Q ss_pred EEcCCCCcccHHHHHHHhhcCCCCcc
Q 029684 152 LITKCEHHFHLSCILEWNERSESCPI 177 (189)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~tCP~ 177 (189)
+-..|+|..|.+|.++||..-..||-
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 45679999999999999999989984
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=0.34 Score=41.59 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=40.3
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC---CCCccCCcC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS---ESCPICDQE 181 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~---~tCP~Cr~~ 181 (189)
.-..|||=.+.-+.+||...+.|||+..+.-|.+..+.. ..||.|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 457899999999888999999999999999999976542 479999543
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.70 E-value=0.11 Score=47.70 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=38.0
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc---CCCCccCCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~ 183 (189)
.....|+||++.+. .+ ..++|.|.|+..|+..-|.. ...||+|+..+.
T Consensus 19 ~k~lEc~ic~~~~~--~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 19 QKILECPICLEHVK--EP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhhccCCceeEEee--cc-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 45678999999993 44 88999999999999876554 448999986554
No 107
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=0.45 Score=39.35 Aligned_cols=31 Identities=26% Similarity=0.609 Sum_probs=25.9
Q ss_pred EEcCCCCcccHHHHHHHhhcCC-CCccCCcCC
Q 029684 152 LITKCEHHFHLSCILEWNERSE-SCPICDQEM 182 (189)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~-tCP~Cr~~l 182 (189)
+.+.|||.||..|+...+.... .||.||...
T Consensus 23 ~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 23 RVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 6777999999999987776544 899999984
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.08 E-value=1 Score=27.74 Aligned_cols=45 Identities=20% Similarity=0.616 Sum_probs=31.7
Q ss_pred ccCccccccccccCCCCe-EEcCCCCcccHHHHHHHhhcCCCCcc--CCcCC
Q 029684 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSESCPI--CDQEM 182 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~~~tCP~--Cr~~l 182 (189)
....|.+|-+.|..++.+ +-..||-.+|+.|..+ ...|-+ |...+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCc
Confidence 456799999999655554 4466999999999643 455655 55444
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.02 E-value=0.82 Score=40.26 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=31.4
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (189)
.....|.||.+.+.. ....+.|||.||..|+...+..+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 455789999999943 56888999999999999888753
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.60 E-value=0.48 Score=44.05 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=33.1
Q ss_pred cCccccccccccC-C---CCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 135 EDTCPICLEEYDT-E---NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 135 ~~~C~ICle~~~~-~---~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
+..|.-|++.... + +.++.+.|||.||..|+.--+.++. |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 4479999988732 2 4568899999999999988776655 55553
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.81 E-value=0.65 Score=43.32 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=34.9
Q ss_pred cccCccccccccccC-CCCeEE---cCCCCcccHHHHHHHhhcC------CCCccCCcCC
Q 029684 133 EEEDTCPICLEEYDT-ENPKLI---TKCEHHFHLSCILEWNERS------ESCPICDQEM 182 (189)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~---~~C~H~Fh~~CI~~Wl~~~------~tCP~Cr~~l 182 (189)
.+.+.|.||..++.. .+..-+ -.|+|.||..||..|..+- -.|++|..-|
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 456778888888843 122233 3499999999999998752 2678886544
No 112
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.43 E-value=1.4 Score=37.12 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=39.1
Q ss_pred CccccccccccC-CCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 136 DTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 136 ~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
..|+||-+..+. ....+-.+|++..|+.|+..-...+.+||.||+....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 679999998733 3344556789999999999988889999999976543
No 113
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=1.8 Score=35.08 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=31.5
Q ss_pred ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh
Q 029684 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
++..+-+-|..||..+ .+| ++++=||+|+.+||.+++.
T Consensus 38 DsiK~FdcCsLtLqPc--~dP-vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPC--RDP-VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccc--cCC-ccCCCCeeeeHHHHHHHHH
Confidence 3445667899999999 466 8899999999999999875
No 114
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=78.94 E-value=1.4 Score=26.82 Aligned_cols=42 Identities=26% Similarity=0.640 Sum_probs=20.6
Q ss_pred cccccccccCC-------CCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 138 CPICLEEYDTE-------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 138 C~ICle~~~~~-------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
|--|+..|... ....-..|+++||.+|=.-.-+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 44566666322 1123367999999999433334456899883
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.40 E-value=2.6 Score=39.29 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=29.1
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCcc
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~ 177 (189)
..|.+|-..+. +--+---.|||.-|.+|++.|+....-||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 35777766552 111123459999999999999998887766
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=76.50 E-value=1.5 Score=34.62 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=35.8
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
.-..|.+|....- ..+.--.|+-.+|..|+.+.+++...||.|..
T Consensus 180 nlk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 3457999998873 33345668888999999999999999999954
No 117
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.76 E-value=2.3 Score=35.62 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=37.6
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc---CCCCccCCc
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCP~Cr~ 180 (189)
.-..||+=.+.-..++|.+.+.|||+.-..-+...-+. +..||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34679998888888899899999999999988776543 347999943
No 118
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=74.23 E-value=1 Score=38.83 Aligned_cols=45 Identities=29% Similarity=0.738 Sum_probs=0.0
Q ss_pred ccCcccccccccc-----------CCCCeEEcCCCCcccHHHHHHHhh------cCCCCccCCcC
Q 029684 134 EEDTCPICLEEYD-----------TENPKLITKCEHHFHLSCILEWNE------RSESCPICDQE 181 (189)
Q Consensus 134 ~~~~C~ICle~~~-----------~~~~~~~~~C~H~Fh~~CI~~Wl~------~~~tCP~Cr~~ 181 (189)
....||+=|..+. ...|-+-+.|||++..+ .|-. ...+||+||+.
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4456887765441 23455778999987643 5643 24589999975
No 119
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=74.12 E-value=0.23 Score=32.29 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=22.1
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
..||.|..+++... +|.+|..|-.. +.....||-|.++|.+
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHHH
Confidence 46999988873222 67777777654 4455679988887653
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=3.3 Score=33.66 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=39.4
Q ss_pred cccCccccccccccCCC-CeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCCC
Q 029684 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
.....|+|=--++.... -..+..|||.|-..-+++.- ..+|++|.+.+..+|.|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeE
Confidence 44567888777763222 23667899999988887743 66999999998887754
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=72.99 E-value=3 Score=32.77 Aligned_cols=42 Identities=31% Similarity=0.760 Sum_probs=27.9
Q ss_pred ccCcccccccc-----ccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 134 EEDTCPICLEE-----YDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~-----~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
.+..|-||-+. |+...-..-..|+..||..|.. +..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45678888742 2222333446799999999975 267999943
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=71.65 E-value=1.6 Score=39.70 Aligned_cols=43 Identities=28% Similarity=0.780 Sum_probs=25.6
Q ss_pred ccCcccccccc-----ccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 134 EEDTCPICLEE-----YDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 134 ~~~~C~ICle~-----~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
....|.||... |...+...-..|++.||..|+.+ .+.-||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34566677321 11122234467999999999654 233499993
No 124
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.81 E-value=2.6 Score=34.84 Aligned_cols=37 Identities=22% Similarity=0.569 Sum_probs=28.7
Q ss_pred cccCccccccccccCCCCeEEcCC----CCcccHHHHHHHhhcC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKC----EHHFHLSCILEWNERS 172 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C----~H~Fh~~CI~~Wl~~~ 172 (189)
.....|.+|.|.++ +. -...| .|.||.-|-++-+++.
T Consensus 266 ~apLcCTLC~ERLE--DT-HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLE--DT-HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhc--cC-ceeecCCCcccceecccCHHHHHhh
Confidence 34578999999994 22 55667 5999999999988853
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=66.66 E-value=4.2 Score=22.06 Aligned_cols=38 Identities=16% Similarity=0.459 Sum_probs=24.5
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
.|..|-+.+.... ..+..=+..||..|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcCc
Confidence 3777887774331 233334678888885 6888877663
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=3.6 Score=35.63 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=31.5
Q ss_pred ccCcccccccccc---CCCCeEEcCCCCcccHHHHHHHhhcCCCCccC
Q 029684 134 EEDTCPICLEEYD---TENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (189)
Q Consensus 134 ~~~~C~ICle~~~---~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~C 178 (189)
.-..|++|.-.+. .-+.+.-. |||.||..|...|......|.-|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4567888887662 22333334 99999999999998877777544
No 127
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=65.00 E-value=2 Score=35.13 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=34.6
Q ss_pred cCccccccccccCCCCeEE----cCCCCcccHHHHHHHhh-c--------CCCCccCCcCCcc
Q 029684 135 EDTCPICLEEYDTENPKLI----TKCEHHFHLSCILEWNE-R--------SESCPICDQEMIF 184 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~----~~C~H~Fh~~CI~~Wl~-~--------~~tCP~Cr~~l~~ 184 (189)
...|-||.+++...+..+. ..|+-++|..|+..-+. . ...||.|++.+..
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 3589999999943333222 34788999999988433 2 3489999986543
No 128
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=63.38 E-value=3 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.649 Sum_probs=10.6
Q ss_pred CCCCcccHHHHHHHhhcCCCCccCCcCCc
Q 029684 155 KCEHHFHLSCILEWNERSESCPICDQEMI 183 (189)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~ 183 (189)
.-+..||..|+ .|-.|++.|.
T Consensus 17 ~~~~~~H~~Cf--------~C~~C~~~l~ 37 (58)
T PF00412_consen 17 AMGKFWHPECF--------KCSKCGKPLN 37 (58)
T ss_dssp ETTEEEETTTS--------BETTTTCBTT
T ss_pred eCCcEEEcccc--------ccCCCCCccC
Confidence 34455555553 4555555443
No 129
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=63.00 E-value=4.8 Score=25.78 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=8.8
Q ss_pred cccHHHHHHHhh
Q 029684 159 HFHLSCILEWNE 170 (189)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (189)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.94 E-value=3.2 Score=24.55 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=26.7
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHHHHHhh------cCCCCccCC
Q 029684 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNE------RSESCPICD 179 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~------~~~tCP~Cr 179 (189)
.|.||......+.-+.=-.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3888988443333333356889999999864322 123677775
No 131
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=60.23 E-value=7.8 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=34.5
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
....|-.|.++.......+--.|.|.||..|=.-.-+.-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34459999888765556566789999999995544445568999963
No 132
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.25 E-value=10 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.450 Sum_probs=32.6
Q ss_pred CccccccccccCC-----------CCeEEcCCCCcccHHHHHHHhhcCCCCccCC
Q 029684 136 DTCPICLEEYDTE-----------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (189)
Q Consensus 136 ~~C~ICle~~~~~-----------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr 179 (189)
..|--|+..|... ....-..|++.||.+|=.-|-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588888887321 1123467999999999888877888999995
No 133
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.71 E-value=6.5 Score=20.34 Aligned_cols=9 Identities=56% Similarity=1.054 Sum_probs=5.2
Q ss_pred ccccccccc
Q 029684 137 TCPICLEEY 145 (189)
Q Consensus 137 ~C~ICle~~ 145 (189)
.||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366665555
No 134
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.88 E-value=3.2 Score=34.58 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=37.6
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCC
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEM 182 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l 182 (189)
.+.+.|-||...+. -+...-.|.|.|+..|...|.....-||.|+...
T Consensus 103 ~~~~~~~~~~g~l~--vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLT--VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEE--ecccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 45667999988873 2324445999999999999999999999988654
No 135
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=55.35 E-value=6.6 Score=24.62 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=11.0
Q ss_pred CCCCccCCcCCccC
Q 029684 172 SESCPICDQEMIFD 185 (189)
Q Consensus 172 ~~tCP~Cr~~l~~~ 185 (189)
...||+|..++...
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 35899999988654
No 136
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=54.23 E-value=7.7 Score=31.59 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=35.0
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC--CCccCC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICD 179 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~Cr 179 (189)
-+..|||=+..+ .+|++-.+|||+|-+.=|...+.... .||+=.
T Consensus 175 fs~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 356788877777 48989999999999999999887643 688743
No 137
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=53.96 E-value=15 Score=34.10 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=27.4
Q ss_pred cCccccccccccCCCCeEEcCCCCcccH--HHHHH-Hhhc----CC--CCccCCcCCccCCCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHL--SCILE-WNER----SE--SCPICDQEMIFDHTF 188 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~--~CI~~-Wl~~----~~--tCP~Cr~~l~~~~~~ 188 (189)
...|+|+...+ .+||.++.|+ .|... |+.. +. .||+|.+...+++.+
T Consensus 306 SL~CPl~~~Rm-------~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 306 SLNCPLSKMRM-------SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred EecCCccccee-------ecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 34566665444 4555555444 56543 3322 11 799999988877653
No 138
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=52.98 E-value=5.6 Score=25.18 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=18.8
Q ss_pred cccCccccccccccCCCCe-EEcCCCCcccHHHHHHHh
Q 029684 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN 169 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl 169 (189)
.+...|.+|...|..-... .=-.||+.||..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4567899999999543333 225699999999986544
No 139
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=52.91 E-value=8.2 Score=31.12 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=36.6
Q ss_pred cccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC--CCcc--CCcCCc
Q 029684 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPI--CDQEMI 183 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~--Cr~~l~ 183 (189)
.-+..|+|=+..+ ..+++..+|+|.|-..=|...++.-- .||. |-+.+.
T Consensus 187 ~~~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~ 239 (275)
T COG5627 187 LLSNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEV 239 (275)
T ss_pred hhcccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhee
Confidence 3456799988887 47878899999999999999988543 5653 544443
No 140
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=52.64 E-value=18 Score=30.52 Aligned_cols=52 Identities=21% Similarity=0.564 Sum_probs=34.3
Q ss_pred cccCcccccccccc---------------CCCCe-EEcCCCCcccHHHHHHHhhc---------CCCCccCCcCCcc
Q 029684 133 EEEDTCPICLEEYD---------------TENPK-LITKCEHHFHLSCILEWNER---------SESCPICDQEMIF 184 (189)
Q Consensus 133 ~~~~~C~ICle~~~---------------~~~~~-~~~~C~H~Fh~~CI~~Wl~~---------~~tCP~Cr~~l~~ 184 (189)
..+..||+|+..-. .+-+. ...||||.--..=.+-|-+. +..||.|-+.|.-
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34678999997631 11111 34689998777777788763 2379999776543
No 141
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=51.51 E-value=3.4 Score=21.35 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=5.8
Q ss_pred CCccCCcCC
Q 029684 174 SCPICDQEM 182 (189)
Q Consensus 174 tCP~Cr~~l 182 (189)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 577776655
No 142
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=51.29 E-value=5.1 Score=24.31 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=5.6
Q ss_pred CCccCCcCCcc
Q 029684 174 SCPICDQEMIF 184 (189)
Q Consensus 174 tCP~Cr~~l~~ 184 (189)
.||+|.++|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999887754
No 143
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF12773 DZR: Double zinc ribbon
Probab=48.49 E-value=17 Score=21.31 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=9.2
Q ss_pred CCCccCCcCCccCC
Q 029684 173 ESCPICDQEMIFDH 186 (189)
Q Consensus 173 ~tCP~Cr~~l~~~~ 186 (189)
..||.|.+.+..+.
T Consensus 30 ~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 30 KICPNCGAENPPNA 43 (50)
T ss_pred CCCcCCcCCCcCCc
Confidence 46888877765543
No 145
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=47.09 E-value=15 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=25.0
Q ss_pred CccccccccccCCCC-eEEcCCCCcccHHHHHHHhh
Q 029684 136 DTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 136 ~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
..|.+|-..|..... ..-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 469999988843322 23357999999999876654
No 146
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=46.69 E-value=10 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.572 Sum_probs=28.8
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~ 185 (189)
...|-||-..+. .=||+||..|-. .+..|.||.+.|...
T Consensus 44 ~~~C~~CK~~v~--------q~g~~YCq~CAY----kkGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVH--------QPGAKYCQTCAY----KKGICAMCGKKILDT 82 (90)
T ss_pred Cccccccccccc--------cCCCccChhhhc----ccCcccccCCeeccc
Confidence 457999977652 226789999954 477999999887544
No 147
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=46.31 E-value=12 Score=33.95 Aligned_cols=36 Identities=28% Similarity=0.719 Sum_probs=25.3
Q ss_pred cccCccccccccccC-----------CCCeEEcCCCCcccHHHHHHHh
Q 029684 133 EEEDTCPICLEEYDT-----------ENPKLITKCEHHFHLSCILEWN 169 (189)
Q Consensus 133 ~~~~~C~ICle~~~~-----------~~~~~~~~C~H~Fh~~CI~~Wl 169 (189)
+....|+||.|.|+. .+. +-+.=|-+||..|+.+-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kda-V~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDA-VYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecce-eeeccCceeeccccchHH
Confidence 677889999999842 122 223358899999987643
No 148
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=46.31 E-value=12 Score=26.57 Aligned_cols=46 Identities=17% Similarity=0.569 Sum_probs=29.1
Q ss_pred ccCcccccccccc--CCCCeEEcCCCCcccHHHHHHHhhcCC--CCccCCc
Q 029684 134 EEDTCPICLEEYD--TENPKLITKCEHHFHLSCILEWNERSE--SCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~~~--~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCP~Cr~ 180 (189)
.+..|.+|...|. ......-..|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 5668999999872 234557788999999999544 11111 5777754
No 149
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=46.18 E-value=28 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHhhcC---------CCCccCCc
Q 029684 157 EHHFHLSCILEWNERS---------ESCPICDQ 180 (189)
Q Consensus 157 ~H~Fh~~CI~~Wl~~~---------~tCP~Cr~ 180 (189)
.=.||..||..++... -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 5679999998887532 27999986
No 150
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.66 E-value=37 Score=22.53 Aligned_cols=50 Identities=20% Similarity=0.474 Sum_probs=20.1
Q ss_pred ccCcccccccccc---CCCCe-EEcCCCCcccHHHHH-HHhhcCCCCccCCcCCc
Q 029684 134 EEDTCPICLEEYD---TENPK-LITKCEHHFHLSCIL-EWNERSESCPICDQEMI 183 (189)
Q Consensus 134 ~~~~C~ICle~~~---~~~~~-~~~~C~H~Fh~~CI~-~Wl~~~~tCP~Cr~~l~ 183 (189)
....|-||=+.+. .++.. .-..|+--.|+.|.. +.-+.++.||.|+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4567999999882 22322 224577788999985 33345779999987543
No 151
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=42.95 E-value=15 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=22.6
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHH
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W 168 (189)
....|.||......--.-....|...||-.|...+
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 45789999988421111122347789999998663
No 152
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=41.56 E-value=17 Score=24.12 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=24.2
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHH
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~ 167 (189)
....|.+|.........-....|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4568999998842222334567899999999865
No 153
>PF14353 CpXC: CpXC protein
Probab=40.86 E-value=31 Score=24.63 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=24.7
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhc---CCCCccCCcCCccCCC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQEMIFDHT 187 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~~~~~ 187 (189)
..||-|...+... +.+.-.-.....=..+-+.. ..+||.|...+..+-+
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCC
Confidence 4688887777321 11111111222333333332 3489999887766543
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.84 E-value=54 Score=20.31 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=31.6
Q ss_pred CccccccccccCCCCeEEcCCC--CcccHHHHHHHhhcCCCCccCCcCCccC
Q 029684 136 DTCPICLEEYDTENPKLITKCE--HHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~--H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~ 185 (189)
..|-.|-.++..... -..-|. ..||..|....| ...||-|...|...
T Consensus 6 pnCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 356677777743332 223354 479999999877 55999998887654
No 155
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.16 E-value=12 Score=22.57 Aligned_cols=38 Identities=26% Similarity=0.623 Sum_probs=20.7
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhc--CCCCccCCcCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPICDQEM 182 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCP~Cr~~l 182 (189)
...||.|-+.++.. . +-..|...-... ...||+|...+
T Consensus 2 ~f~CP~C~~~~~~~-~---------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-S---------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH-H---------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 46799998866311 1 223333333222 34799997643
No 156
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=38.65 E-value=29 Score=28.57 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=26.7
Q ss_pred cCccccccccccCCCCeEEcC--CCCcccHHHHHHHh-hcCCCCc
Q 029684 135 EDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWN-ERSESCP 176 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~--C~H~Fh~~CI~~Wl-~~~~tCP 176 (189)
-..|.||++.-..+.+..-+. =.=.=|+.|..+|- ..+..||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 346999998875444432211 11245799999994 4567888
No 157
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.60 E-value=16 Score=20.28 Aligned_cols=11 Identities=45% Similarity=1.108 Sum_probs=7.7
Q ss_pred Ccccccccccc
Q 029684 136 DTCPICLEEYD 146 (189)
Q Consensus 136 ~~C~ICle~~~ 146 (189)
..|+-|.-.|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 35788887774
No 158
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=38.05 E-value=19 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=12.6
Q ss_pred cCCCCccCCcCCccCCC
Q 029684 171 RSESCPICDQEMIFDHT 187 (189)
Q Consensus 171 ~~~tCP~Cr~~l~~~~~ 187 (189)
.++.||+|.+++..++.
T Consensus 2 ~HkHC~~CG~~Ip~~~~ 18 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDES 18 (59)
T ss_pred CCCcCCcCCCcCCcchh
Confidence 35679999888877653
No 159
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=37.82 E-value=2.4 Score=29.46 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=12.4
Q ss_pred CccccccccccCCCCeEEcCC--CCcccHHHHHHHhhc---CCCCccCCcCCcc
Q 029684 136 DTCPICLEEYDTENPKLITKC--EHHFHLSCILEWNER---SESCPICDQEMIF 184 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C--~H~Fh~~CI~~Wl~~---~~tCP~Cr~~l~~ 184 (189)
..|+||.+.+...+. ....| ||.|-+-.+.-..-. -..|++|+..+..
T Consensus 15 E~C~~C~~~i~~~~~-~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDL-DEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------S-SEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCc-CEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 579999988754443 33445 688754443221111 1478988775543
No 160
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=37.00 E-value=14 Score=26.08 Aligned_cols=29 Identities=38% Similarity=0.792 Sum_probs=20.6
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhh
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
..|+.|..+|.-++. ++.+|-.|..+|-.
T Consensus 4 p~cp~c~sEytYed~------~~~~cpec~~ew~~ 32 (112)
T COG2824 4 PPCPKCNSEYTYEDG------GQLICPECAHEWNE 32 (112)
T ss_pred CCCCccCCceEEecC------ceEeCchhcccccc
Confidence 369999999943343 24577888888864
No 161
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.65 E-value=30 Score=18.10 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=10.0
Q ss_pred ccccccccccCCCCeEEcCCCCcccHHHH
Q 029684 137 TCPICLEEYDTENPKLITKCEHHFHLSCI 165 (189)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI 165 (189)
.|.+|.........-.=..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47888887743122244678888888885
No 162
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=36.58 E-value=25 Score=26.41 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=26.2
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
.......|+.|-..|. ..+.+...+.||.|...+...|
T Consensus 105 ~~~~~Y~Cp~c~~r~t------------------f~eA~~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 105 TNNMFFICPNMCVRFT------------------FNEAMELNFTCPRCGAMLDYLD 142 (158)
T ss_pred cCCCeEECCCCCcEee------------------HHHHHHcCCcCCCCCCEeeecc
Confidence 3456677888877763 2233445789999999887655
No 163
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.23 E-value=8.3 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=15.4
Q ss_pred CCeEEc-CCCCcccHHHHHHH
Q 029684 149 NPKLIT-KCEHHFHLSCILEW 168 (189)
Q Consensus 149 ~~~~~~-~C~H~Fh~~CI~~W 168 (189)
...+.- .|+|.||..|..+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 333444 78999999999888
No 164
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.12 E-value=27 Score=22.84 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHhhcCCCCccCCcCCcc
Q 029684 157 EHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 157 ~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~ 184 (189)
.|.||..|...-| ...||-|...+.-
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 4889999998755 4599999877654
No 165
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.06 E-value=2.8 Score=34.67 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=20.6
Q ss_pred cCccccccccccCCCCeEEcC----CCCcccHHHHHHHhhcCCCCccCCc
Q 029684 135 EDTCPICLEEYDTENPKLITK----CEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~----C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
...||||=..... .++.-. =.|.+|.-|-.+|-.....||.|..
T Consensus 172 ~g~CPvCGs~P~~--s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVL--SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEE--EEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCce--EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 4689999776521 011111 1467888999999888889999964
No 166
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.93 E-value=5.9 Score=32.65 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=35.2
Q ss_pred cCccccccccccCC----CCeEEcC--------CCCcccHHHHHHHhhcCC-CCccCCcC
Q 029684 135 EDTCPICLEEYDTE----NPKLITK--------CEHHFHLSCILEWNERSE-SCPICDQE 181 (189)
Q Consensus 135 ~~~C~ICle~~~~~----~~~~~~~--------C~H~Fh~~CI~~Wl~~~~-tCP~Cr~~ 181 (189)
...|.||...|+.. .+ .++. |||..|..|+..-+.... .||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p-~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAP-LVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccch-hHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46699999999521 12 3444 999999999999877654 89999874
No 167
>PLN02189 cellulose synthase
Probab=35.21 E-value=37 Score=33.27 Aligned_cols=50 Identities=20% Similarity=0.492 Sum_probs=33.5
Q ss_pred ccCcccccccccc---CCCCeEE-cCCCCcccHHHHHH-HhhcCCCCccCCcCCc
Q 029684 134 EEDTCPICLEEYD---TENPKLI-TKCEHHFHLSCILE-WNERSESCPICDQEMI 183 (189)
Q Consensus 134 ~~~~C~ICle~~~---~~~~~~~-~~C~H~Fh~~CI~~-Wl~~~~tCP~Cr~~l~ 183 (189)
....|.||-+++. .+++.+. -.|+--.|..|..- .-+.++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999983 2333222 34777789999842 2234669999998765
No 168
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=35.15 E-value=1.4e+02 Score=25.32 Aligned_cols=44 Identities=9% Similarity=-0.103 Sum_probs=32.0
Q ss_pred ccCccccccccccCCCCeEEcCCCC-cccHHHHHHHhhcCCCCccCCcCC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEH-HFHLSCILEWNERSESCPICDQEM 182 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H-~Fh~~CI~~Wl~~~~tCP~Cr~~l 182 (189)
....|-.|-+-. -..++.+|+| .|+.+|.. +.-..+||+|....
T Consensus 342 s~~~~~~~~~~~---~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGL---LSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCce---eeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 345677776665 2337789998 58999977 56677999997644
No 169
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=34.74 E-value=6.4 Score=32.77 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=27.6
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHhhcC
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (189)
.+|.+|+++|..+.....+.|.-.||..|+..|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3899999999543333555565699999999998753
No 170
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.06 E-value=34 Score=18.40 Aligned_cols=8 Identities=38% Similarity=1.178 Sum_probs=5.6
Q ss_pred CCCccCCc
Q 029684 173 ESCPICDQ 180 (189)
Q Consensus 173 ~tCP~Cr~ 180 (189)
..||+|..
T Consensus 18 ~~CP~Cg~ 25 (33)
T cd00350 18 WVCPVCGA 25 (33)
T ss_pred CcCcCCCC
Confidence 37888865
No 171
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.56 E-value=33 Score=23.65 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.3
Q ss_pred ccCccccccccccCCCCeEEcCCCCcccHHHHHHHhh
Q 029684 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (189)
.+..|.||-..+..++....++ .-..|.+|+.+-..
T Consensus 5 kewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 5 KEWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred ceeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 3567999999998788877777 55689999976543
No 172
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=33.23 E-value=37 Score=26.08 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=25.7
Q ss_pred CcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
......|+.|--.|.. .+.+...+.||.|...|...+
T Consensus 114 ~~~~Y~Cp~C~~rytf------------------~eA~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 114 NNMFFFCPNCHIRFTF------------------DEAMEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred CCCEEECCCCCcEEeH------------------HHHhhcCCcCCCCCCCCeecc
Confidence 3456778888777732 133456789999999887655
No 173
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=32.94 E-value=11 Score=31.42 Aligned_cols=44 Identities=20% Similarity=0.558 Sum_probs=28.3
Q ss_pred cCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCCC
Q 029684 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~~ 187 (189)
...|..|.+-+-+.+ ++.-.=.|+||.+|. .|-+|++.|...++
T Consensus 92 GTKCsaC~~GIpPtq-VVRkAqd~VYHl~CF--------~C~iC~R~L~TGdE 135 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQ-VVRKAQDFVYHLHCF--------ACFICKRQLATGDE 135 (383)
T ss_pred CCcchhhcCCCChHH-HHHHhhcceeehhhh--------hhHhhhcccccCCe
Confidence 456777777763222 233334688999997 57788887766554
No 174
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=32.12 E-value=29 Score=20.91 Aligned_cols=23 Identities=35% Similarity=0.820 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHHhhcCCCCccC
Q 029684 155 KCEHHFHLSCILEWNERSESCPIC 178 (189)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~tCP~C 178 (189)
.|||.|-..=-.+ ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 3455554432222 2455678887
No 175
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=32.01 E-value=15 Score=23.67 Aligned_cols=37 Identities=24% Similarity=0.559 Sum_probs=24.3
Q ss_pred ccCccccccccccCCCCeEEcCCC-----CcccHHHHHHHhhcC
Q 029684 134 EEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERS 172 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~ 172 (189)
+...|.+|+.++-. ....++=+ |+-.++|..+|..+.
T Consensus 10 ~~~sC~vC~KEIPl--~~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 10 KTTSCCVCCKEIPL--DAAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred ccchHHHHhhhCCh--hhccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 34679999999831 11344444 444568999998764
No 176
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=26 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=11.0
Q ss_pred cccHHHHHHHhhc
Q 029684 159 HFHLSCILEWNER 171 (189)
Q Consensus 159 ~Fh~~CI~~Wl~~ 171 (189)
-||..|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 177
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=28.35 E-value=20 Score=18.78 Aligned_cols=10 Identities=30% Similarity=1.418 Sum_probs=5.2
Q ss_pred CCccCCcCCc
Q 029684 174 SCPICDQEMI 183 (189)
Q Consensus 174 tCP~Cr~~l~ 183 (189)
.||+|...+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4888887776
No 178
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.34 E-value=9.8 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.633 Sum_probs=14.4
Q ss_pred cCCCCcccHHHHHHHhhcCCCCccCCc
Q 029684 154 TKCEHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 154 ~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
..|||.|-..--..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 467777753321110 22448999987
No 179
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=29 Score=21.84 Aligned_cols=14 Identities=29% Similarity=1.184 Sum_probs=10.4
Q ss_pred CCccCCcCCccCCC
Q 029684 174 SCPICDQEMIFDHT 187 (189)
Q Consensus 174 tCP~Cr~~l~~~~~ 187 (189)
.||+||..+..++.
T Consensus 10 aCP~~kg~L~~~~~ 23 (60)
T COG2835 10 ACPVCKGPLVYDEE 23 (60)
T ss_pred eccCcCCcceEecc
Confidence 68999888766543
No 180
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.71 E-value=9.6 Score=19.01 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=2.2
Q ss_pred cccccc
Q 029684 139 PICLEE 144 (189)
Q Consensus 139 ~ICle~ 144 (189)
+-|-.+
T Consensus 3 p~CG~~ 8 (23)
T PF13240_consen 3 PNCGAE 8 (23)
T ss_pred cccCCC
Confidence 333333
No 181
>PRK01343 zinc-binding protein; Provisional
Probab=26.67 E-value=39 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=8.6
Q ss_pred CCCCccCCcCCc
Q 029684 172 SESCPICDQEMI 183 (189)
Q Consensus 172 ~~tCP~Cr~~l~ 183 (189)
...||+|++.+.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 457888888754
No 182
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.03 E-value=21 Score=30.02 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=30.6
Q ss_pred ccCccccccccccCCCCeEE--cCC--CCcccHHHHHHHhhcCCCCccCCc
Q 029684 134 EEDTCPICLEEYDTENPKLI--TKC--EHHFHLSCILEWNERSESCPICDQ 180 (189)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~--~~C--~H~Fh~~CI~~Wl~~~~tCP~Cr~ 180 (189)
..-.||||=..-... ++. ..= .|.+|.-|-.+|-..+..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899998775211 111 112 256788899999888889999975
No 183
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.98 E-value=62 Score=23.05 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=17.1
Q ss_pred HHhhcCCCCccCCcCCccCCCC
Q 029684 167 EWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 167 ~Wl~~~~tCP~Cr~~l~~~~~~ 188 (189)
..+.+...|..|++++..|..+
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred hhhchhhccCcCCCcCccCchh
Confidence 4456677899999999887654
No 184
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.77 E-value=25 Score=35.68 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=38.9
Q ss_pred cCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCC----CCccCCcCC
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQEM 182 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----tCP~Cr~~l 182 (189)
.......|.||........-..-..|.-.||..|++.-+.... .||-||..-
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4456678999999986544444456788999999998876543 899998753
No 185
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.76 E-value=42 Score=21.03 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=13.2
Q ss_pred cCCCCccCCcCCccCCC
Q 029684 171 RSESCPICDQEMIFDHT 187 (189)
Q Consensus 171 ~~~tCP~Cr~~l~~~~~ 187 (189)
-+..|++|.+.+..|+.
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
Confidence 35679999999888764
No 186
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=25.59 E-value=20 Score=21.90 Aligned_cols=9 Identities=44% Similarity=1.353 Sum_probs=3.3
Q ss_pred CCccCCcCC
Q 029684 174 SCPICDQEM 182 (189)
Q Consensus 174 tCP~Cr~~l 182 (189)
+||+|...+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 566665544
No 187
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.42 E-value=16 Score=30.64 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=29.7
Q ss_pred cCccccccccccCCCCeEE--cCCC--CcccHHHHHHHhhcCCCCccCCcC
Q 029684 135 EDTCPICLEEYDTENPKLI--TKCE--HHFHLSCILEWNERSESCPICDQE 181 (189)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~--~~C~--H~Fh~~CI~~Wl~~~~tCP~Cr~~ 181 (189)
.-.||||=..-...- +.. ..=| +.+|.-|-.+|-.....||.|...
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 348999987652110 000 0122 557778888998888899999753
No 188
>PRK11827 hypothetical protein; Provisional
Probab=23.76 E-value=29 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.630 Sum_probs=9.1
Q ss_pred HhhcCCCCccCCcCCccC
Q 029684 168 WNERSESCPICDQEMIFD 185 (189)
Q Consensus 168 Wl~~~~tCP~Cr~~l~~~ 185 (189)
|+..--.||+|+..+..+
T Consensus 4 ~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 4 RLLEIIACPVCNGKLWYN 21 (60)
T ss_pred HHHhheECCCCCCcCeEc
Confidence 333333566666655543
No 189
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.42 E-value=67 Score=22.41 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=24.9
Q ss_pred CccccccccccCCCCeEEcCCCCcccHHHHHHHh
Q 029684 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (189)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (189)
..|.||-..+..++....++= -..|..|+.+=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 579999999976776555554 568999997754
No 190
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.36 E-value=57 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=15.0
Q ss_pred ccHHHHHHHhhcCCCCccCCcC
Q 029684 160 FHLSCILEWNERSESCPICDQE 181 (189)
Q Consensus 160 Fh~~CI~~Wl~~~~tCP~Cr~~ 181 (189)
-|.+|-...-..-..||+|+..
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccc
Confidence 4667765544455699999864
No 191
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=22.71 E-value=32 Score=31.80 Aligned_cols=48 Identities=21% Similarity=0.590 Sum_probs=30.8
Q ss_pred cccCccccccccccCCCC--eEEcCCCCcccHHHHHHHhhcC---C--CCccCCc
Q 029684 133 EEEDTCPICLEEYDTENP--KLITKCEHHFHLSCILEWNERS---E--SCPICDQ 180 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~~--~~~~~C~H~Fh~~CI~~Wl~~~---~--tCP~Cr~ 180 (189)
.....|+||-..-..... ...-.|+-.+|..|+..|+... . .||-||.
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 345677777655432222 1223578999999999998753 2 5777765
No 192
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.68 E-value=47 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=15.3
Q ss_pred ccccccccCCCCeEEcCCCCcccH
Q 029684 139 PICLEEYDTENPKLITKCEHHFHL 162 (189)
Q Consensus 139 ~ICle~~~~~~~~~~~~C~H~Fh~ 162 (189)
-||++.- ..++.-.|||.|+.
T Consensus 61 fi~qs~~---~rv~rcecghsf~d 81 (165)
T COG4647 61 FICQSAQ---KRVIRCECGHSFGD 81 (165)
T ss_pred EEEeccc---ccEEEEeccccccC
Confidence 4676653 55677889999975
No 193
>PF15353 HECA: Headcase protein family homologue
Probab=22.47 E-value=58 Score=22.91 Aligned_cols=15 Identities=20% Similarity=0.705 Sum_probs=12.4
Q ss_pred CCCcccHHHHHHHhh
Q 029684 156 CEHHFHLSCILEWNE 170 (189)
Q Consensus 156 C~H~Fh~~CI~~Wl~ 170 (189)
.++.+|..|...|=.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 378999999999843
No 194
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.34 E-value=71 Score=24.61 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=27.1
Q ss_pred ccCcccCccccccccccCCCCeEEcCCCCcccHHHHHHHhhcCCCCccCCcCCccCC
Q 029684 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCP~Cr~~l~~~~ 186 (189)
........|+.|...|. +.+-+...++||.|...+...+
T Consensus 108 ~~~~~~y~C~~~~~r~s------------------fdeA~~~~F~Cp~Cg~~L~~~d 146 (176)
T COG1675 108 ETENNYYVCPNCHVKYS------------------FDEAMELGFTCPKCGEDLEEYD 146 (176)
T ss_pred hccCCceeCCCCCCccc------------------HHHHHHhCCCCCCCCchhhhcc
Confidence 34566778888887773 3344555689999988876554
No 195
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.25 E-value=22 Score=26.16 Aligned_cols=44 Identities=27% Similarity=0.630 Sum_probs=24.8
Q ss_pred CcccCccccccccccCCCCeEEcCCCC-------cccHHHHHHHhhcCC----CCccCCcC
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEH-------HFHLSCILEWNERSE----SCPICDQE 181 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H-------~Fh~~CI~~Wl~~~~----tCP~Cr~~ 181 (189)
..++..|.||+..- ..--||| .||..|--+.-.+++ .|-+|++.
T Consensus 62 v~ddatC~IC~KTK------FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTK------FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcc------cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 35677899998652 3344666 344455433322322 57777653
No 196
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.05 E-value=82 Score=31.12 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=33.5
Q ss_pred ccCcccccccccc---CCCCe-EEcCCCCcccHHHHH-HHhhcCCCCccCCcCCc
Q 029684 134 EEDTCPICLEEYD---TENPK-LITKCEHHFHLSCIL-EWNERSESCPICDQEMI 183 (189)
Q Consensus 134 ~~~~C~ICle~~~---~~~~~-~~~~C~H~Fh~~CI~-~Wl~~~~tCP~Cr~~l~ 183 (189)
....|-||=+++. .+++. .--.|+--.|+.|.. +.-+.++.||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3457999999982 23332 223467779999983 23344679999998765
No 197
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.79 E-value=58 Score=20.60 Aligned_cols=12 Identities=25% Similarity=0.847 Sum_probs=9.1
Q ss_pred CCCCccCCcCCc
Q 029684 172 SESCPICDQEMI 183 (189)
Q Consensus 172 ~~tCP~Cr~~l~ 183 (189)
...||+|++.+.
T Consensus 6 ~v~CP~C~k~~~ 17 (62)
T PRK00418 6 TVNCPTCGKPVE 17 (62)
T ss_pred cccCCCCCCccc
Confidence 357999998764
No 198
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=20.56 E-value=55 Score=20.05 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=6.9
Q ss_pred CCccCCcCCccC
Q 029684 174 SCPICDQEMIFD 185 (189)
Q Consensus 174 tCP~Cr~~l~~~ 185 (189)
.||.|.+.|...
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 566666655543
Done!