Query 029684
Match_columns 189
No_of_seqs 219 out of 1682
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:25:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029684.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2304-2308//hhsearch_pdb/029684hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 1.0 1 1 99.9 4.7 54 131-184 36-89 (91)
2 4a0k_B E3 ubiquitin-protein li 1.0 1 1 98.8 0.4 70 117-186 27-114 (117)
3 3dpl_R Ring-box protein 1; ubi 1.0 1 1 98.4 5.1 70 117-186 16-103 (106)
4 1x4j_A Ring finger protein 38; 1.0 1 1 96.3 4.5 55 131-185 19-73 (75)
5 2ect_A Ring finger protein 126 1.0 1 1 94.6 4.8 57 132-188 12-68 (78)
6 1v87_A Deltex protein 2; ring- 1.0 1 1 94.0 5.4 53 133-185 23-95 (114)
7 2ecl_A Ring-box protein 2; RNF 1.0 1 1 94.0 4.9 54 133-186 13-78 (81)
8 2ep4_A Ring finger protein 24; 1.0 1 1 93.6 5.9 57 132-188 12-68 (74)
9 4ayc_A E3 ubiquitin-protein li 1.0 1 1 93.4 3.7 50 132-184 50-99 (138)
10 2kiz_A E3 ubiquitin-protein li 1.0 1 1 92.2 6.4 57 131-187 10-66 (69)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=99.88 Aligned_cols=54 Identities=33% Similarity=0.723 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 576667554333345689975873899702199899996049988667767856
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~ 184 (189)
..+++..|+||++.|..++.++.++|+|.||..||.+|+..+.+||+||+.+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCCCCCCHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 668999884369021589827962799948999999999769968380940799
No 2
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=1.00 E-value=1 Score=98.81 Aligned_cols=70 Identities=27% Similarity=0.537 Sum_probs=52.4
Q ss_pred CCCCCHHCCCCCC---CCCCCCCCCCCCCCCCCCC---------------CCEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9873001000102---3576667554333345689---------------975873899702199899996049988667
Q 029684 117 SPRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPIC 178 (189)
Q Consensus 117 s~~~~~~~~~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiC 178 (189)
..+++++++.... ....+++.|+||++.|... ..++.++|+|.||..||.+||..+.+||+|
T Consensus 27 ~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~C 106 (117)
T 4a0k_B 27 GKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106 (117)
T ss_dssp -CCSEEEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred CCCCEEEEEEEEEEEEEECCCCCCCEECCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCC
T ss_conf 67745888888878884068997675879445085811213644456664311047758547379999999729908899
Q ss_pred CCCCCCCC
Q ss_conf 76785678
Q 029684 179 DQEMIFDH 186 (189)
Q Consensus 179 R~~l~~~~ 186 (189)
|+.+.+.+
T Consensus 107 r~~~~~~k 114 (117)
T 4a0k_B 107 NREWEFQK 114 (117)
T ss_dssp --------
T ss_pred CCEEEEEC
T ss_conf 98645533
No 3
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=1.00 E-value=1 Score=98.35 Aligned_cols=70 Identities=27% Similarity=0.537 Sum_probs=52.8
Q ss_pred CCCCCHHCCCCCC---CCCCCCCCCCCCCCCCCCC---------------CCEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9873001000102---3576667554333345689---------------975873899702199899996049988667
Q 029684 117 SPRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPIC 178 (189)
Q Consensus 117 s~~~~~~~~~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiC 178 (189)
..+++.+++.... ....+++.|+||++.|... .++++++|+|.||..||.+||..+.+||+|
T Consensus 16 ~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 95 (106)
T 3dpl_R 16 GKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95 (106)
T ss_dssp -CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSS
T ss_pred CCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCCCC
T ss_conf 56734688888856763378898970179668484700102344567766337616648679989999999769858698
Q ss_pred CCCCCCCC
Q ss_conf 76785678
Q 029684 179 DQEMIFDH 186 (189)
Q Consensus 179 R~~l~~~~ 186 (189)
|+.+.+.+
T Consensus 96 r~~~~~~~ 103 (106)
T 3dpl_R 96 NREWEFQK 103 (106)
T ss_dssp CSBCCEEE
T ss_pred CCCCEEEC
T ss_conf 98262534
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.31 Aligned_cols=55 Identities=24% Similarity=0.728 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5766675543333456899758738997021998999960499886677678567
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFD 185 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~~ 185 (189)
...++..|+||++.|...+.++.++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6679998938893527998699878998757999999997499390708807888
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=94.58 Aligned_cols=57 Identities=33% Similarity=0.762 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 766675543333456899758738997021998999960499886677678567899
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~~~~~ 188 (189)
..++..|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCEECCCCCCCCCCEEEECCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 799998924883006997779858899535899999998599081869745876667
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=93.99 Aligned_cols=53 Identities=34% Similarity=0.688 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCC---------------CEEECCCCCCCCHHHHHHHH-----HCCCCCCCCCCCCCCC
Q ss_conf 66675543333456899---------------75873899702199899996-----0499886677678567
Q 029684 133 EEEDTCPICLEEYDTEN---------------PKLITKCEHHFHLSCILEWN-----ERSESCPICDQEMIFD 185 (189)
Q Consensus 133 ~~~~~C~ICle~~~~~~---------------~~~~~~C~H~Fh~~CI~~Wl-----~~~~tCPiCR~~l~~~ 185 (189)
..++.|+|||+.|.... .+.+++|+|.||..||.+|+ ..+.+||+||..+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999684078100374443332223455752135229979960499999999703677898699999823777
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.97 Aligned_cols=54 Identities=31% Similarity=0.779 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCCCC-----------CC-CEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 666755433334568-----------99-7587389970219989999604998866776785678
Q 029684 133 EEEDTCPICLEEYDT-----------EN-PKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDH 186 (189)
Q Consensus 133 ~~~~~C~ICle~~~~-----------~~-~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~~~ 186 (189)
.+++.|+||++.|.. ++ .+++++|+|.||..||.+|++++.+||+||+.+.+.+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 889999133935656486000225788568994899984475999999986898988297843333
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.61 Aligned_cols=57 Identities=26% Similarity=0.770 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 766675543333456899758738997021998999960499886677678567899
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHTF 188 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~~~~~ 188 (189)
..++..|+||++.|.....+..++|+|.||..||.+|++.+.+||+||+.+.....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 899998957792017997278708999854999999998599697959341661105
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=93.36 Aligned_cols=50 Identities=36% Similarity=0.767 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 76667554333345689975873899702199899996049988667767856
Q 029684 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIF 184 (189)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~ 184 (189)
.+++..|+||++.|. ++ ++++|||.||..||..|+..+.+||+||+.+..
T Consensus 50 ~~~~~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 50 LENELQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHHSBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCCCCCCCCCCCCC--CC-EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 611599756272327--96-678899984699999999769969999982788
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=92.19 Aligned_cols=57 Identities=26% Similarity=0.647 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 576667554333345689975873899702199899996049988667767856789
Q 029684 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 187 (189)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPiCR~~l~~~~~ 187 (189)
..+++..|+||++.|.....++.++|+|.||..||.+|+..+.+||+||+.+....+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 688999992589131689868986899899899999999859979280960647698
Done!