BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029685
         (189 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5E866|APAH_VIBF1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Vibrio fischeri
           (strain ATCC 700601 / ES114) GN=apaH PE=3 SV=1
          Length = 271

 Score = 31.2 bits (69), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 58  HRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPW 93
           H   + AV++G ++  E ++T P +  PDS+E   W
Sbjct: 66  HDLHLLAVSQGISRVKEKDKTAPIFTAPDSEELLTW 101


>sp|P29849|PHSM_STRPN Maltodextrin phosphorylase OS=Streptococcus pneumoniae serotype 4
           (strain ATCC BAA-334 / TIGR4) GN=malP PE=3 SV=2
          Length = 752

 Score = 31.2 bits (69), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 90  PPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKN 136
           P  W T++   + S  S+++PF  + LTST+  I   G  +E   KN
Sbjct: 145 PNAWLTEQNWLVRSSRSYQVPFADFTLTSTLYDIDVTG--YETATKN 189


>sp|Q3Z4X5|CYOE_SHISS Protoheme IX farnesyltransferase OS=Shigella sonnei (strain Ss046)
           GN=cyoE PE=3 SV=1
          Length = 296

 Score = 30.0 bits (66), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 21/85 (24%)

Query: 101 LTSQGSFEIPFYVYLLTSTITAIAAIGSIF-EYV------------NKNPVFGILN-SDS 146
           L S+GS + P ++Y L   ++ + A G +F  Y+            N+  V G+++ + S
Sbjct: 28  LASKGSIDYPLFIYTLVG-VSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVS 86

Query: 147 IFYAPLLGFFAFTGFPTSAFLWFKS 171
           + YA LLGF  F        LWF +
Sbjct: 87  LVYATLLGFAGFM------LLWFGA 105


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,467,786
Number of Sequences: 539616
Number of extensions: 2845821
Number of successful extensions: 7539
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7534
Number of HSP's gapped (non-prelim): 22
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)