Query 029685
Match_columns 189
No_of_seqs 57 out of 59
Neff 2.2
Searched_HMMs 29240
Date Tue Mar 26 18:30:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029685.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2304-2308//hhsearch_pdb/029685hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nq4_A 6,7-dimethyl-8-ribityll 1.0 1 1 22.9 -3.0 70 76-149 46-124 (156)
2 2c92_A 6,7-dimethyl-8-ribityll 1.0 1 1 16.6 -4.4 36 108-147 86-122 (160)
3 2i0f_A 6,7-dimethyl-8-ribityll 1.0 1 1 16.2 -3.2 43 105-147 52-123 (157)
4 2obx_A DMRL synthase 1, 6,7-di 1.0 1 1 15.5 -3.2 35 108-146 84-119 (157)
5 1hqk_A 6,7-dimethyl-8-ribityll 1.0 1 1 15.5 -4.6 70 76-149 45-123 (154)
6 1ejb_A Lumazine synthase; anal 1.0 1 1 15.2 -3.2 37 107-147 93-130 (168)
7 1di0_A Lumazine synthase; tran 1.0 1 1 15.0 -3.7 37 107-147 82-119 (158)
8 1rvv_A Riboflavin synthase; tr 1.0 1 1 14.9 -3.7 71 76-150 45-124 (154)
9 1kz1_A 6,7-dimethyl-8-ribityll 1.0 1 1 14.9 -3.2 68 77-148 52-128 (159)
10 1c41_A Lumazine synthase; ribo 1.0 1 1 14.9 0.0 70 75-144 47-142 (200)
No 1
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=1.00 E-value=1 Score=22.93 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCC
Q ss_conf 55799888999999998543468887788--------8657407999999999999873023263229974-00026994
Q 029685 76 EETIPSWAKPDSDEPPPWATDEGKGLTSQ--------GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDS 146 (189)
Q Consensus 76 ~e~~pswAkp~sde~PPWaR~E~~~~~a~--------~~~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS 146 (189)
++.+.-+--||+=|.|-=+++=.+...-+ =.++-|-+-|....+..+|+-+. +.++.|+ ||++++|+
T Consensus 46 ~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~----L~~~vPV~~GVLT~~~ 121 (156)
T 3nq4_A 46 DDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVA----QDSGVPVAFGVLTTES 121 (156)
T ss_dssp TTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHH----HHHCCCEEEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH----HCCCCCEEEEEECCCC
T ss_conf 035389985858799999999986399878999631044886398999999999999997----4209987999858899
Q ss_pred CCC
Q ss_conf 221
Q 029685 147 IFY 149 (189)
Q Consensus 147 ~ly 149 (189)
.--
T Consensus 122 ~eQ 124 (156)
T 3nq4_A 122 IEQ 124 (156)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 2
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=1.00 E-value=1 Score=16.65 Aligned_cols=36 Identities=14% Similarity=0.456 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCCC
Q ss_conf 7407999999999999873023263229974-000269942
Q 029685 108 EIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDSI 147 (189)
Q Consensus 108 ~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS~ 147 (189)
+-|-+-|....+..+|.-+. +-++.|+ ||++++|+.
T Consensus 86 ~T~Hfd~Va~~vs~Gl~~v~----L~~~vPV~~GVLT~~~~ 122 (160)
T 2c92_A 86 QTPHFDYVCDAVTQGLTRVS----LDSSTPIANGVLTTNTE 122 (160)
T ss_dssp SSTHHHHHHHHHHHHHHHHH----HHHTCCEEEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHCCCCEEEEECCCCCH
T ss_conf 86187999999999999998----61099879997089989
No 3
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=1.00 E-value=1 Score=16.23 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHH-------HHHHHHHCCE-------EEEE--------------CCCCC-CCCCCCCCC
Q ss_conf 865740799999999-------9999873023-------2632--------------29974-000269942
Q 029685 105 GSFEIPFYVYLLTST-------ITAIAAIGSI-------FEYV--------------NKNPV-FGILNSDSI 147 (189)
Q Consensus 105 ~~~~lPf~~yLl~Sc-------ItAIAAVGSI-------FEls--------------~g~P~-fGv~~tDS~ 147 (189)
+.+|+|+-+-.++.. .-||-+.|+| |||. ++.|+ ||++++|+.
T Consensus 52 GafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~ 123 (157)
T 2i0f_A 52 GALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENE 123 (157)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 688999999999860654579977899952215388618899999999999999860199879998479999
No 4
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=1.00 E-value=1 Score=15.55 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCC
Q ss_conf 7407999999999999873023263229974-00026994
Q 029685 108 EIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDS 146 (189)
Q Consensus 108 ~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS 146 (189)
+-|-+-|....+..+|+-+. +.++.|+ ||++++|+
T Consensus 84 ~T~Hfd~Va~~vs~Gl~~v~----L~~~vPV~~GVLT~~~ 119 (157)
T 2obx_A 84 GIYRHEFVASAVIDGMMNVQ----LSTGVPVLSAVLTPHN 119 (157)
T ss_dssp SSBCCHHHHHHHHHHHHHHH----HHHCCCEEEEEECBSC
T ss_pred CCCHHHHHHHHHHHHHHHHH----HHCCCCEEEEECCCCC
T ss_conf 97198999999999999998----6209987999638898
No 5
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=1.00 E-value=1 Score=15.53 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCC
Q ss_conf 55799888999999998543468887788--------8657407999999999999873023263229974-00026994
Q 029685 76 EETIPSWAKPDSDEPPPWATDEGKGLTSQ--------GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDS 146 (189)
Q Consensus 76 ~e~~pswAkp~sde~PPWaR~E~~~~~a~--------~~~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS 146 (189)
++++--+--||+=|.|-=+++-.+...-+ =.++-|-+-|....+..+|+-+. +.++.|+ ||++++|+
T Consensus 45 ~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~Va~~vs~gl~~v~----l~~~vPV~~GVLT~~~ 120 (154)
T 1hqk_A 45 EEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLS----LELRKPITFGVITADT 120 (154)
T ss_dssp GGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHHHHHHHHHHHHHH----HHHTSCEEEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHCCCCEEEEEECCCC
T ss_conf 045699988868899999999985499778999632053886288999999999999998----6209987999707998
Q ss_pred CCC
Q ss_conf 221
Q 029685 147 IFY 149 (189)
Q Consensus 147 ~ly 149 (189)
.--
T Consensus 121 ~eQ 123 (154)
T 1hqk_A 121 LEQ 123 (154)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 6
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=1.00 E-value=1 Score=15.19 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCCC
Q ss_conf 57407999999999999873023263229974-000269942
Q 029685 107 FEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDSI 147 (189)
Q Consensus 107 ~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS~ 147 (189)
++-|-+-|....+..+|+-+. +.++.|+ ||++++|+.
T Consensus 93 G~T~Hfd~Va~~vs~Gl~~vs----L~~~vPV~~GVLT~~~~ 130 (168)
T 1ejb_A 93 GSTMHFEYISDSTTHALMNLQ----EKVDMPVIFGLLTCMTE 130 (168)
T ss_dssp CSSSHHHHHHHHHHHHHHHHH----HHHTSCBCCEEEEESSH
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HHCCCCEEEEEECCCCH
T ss_conf 886288999999999999998----62099879997368999
No 7
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=1.00 E-value=1 Score=14.96 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCCC
Q ss_conf 57407999999999999873023263229974-000269942
Q 029685 107 FEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDSI 147 (189)
Q Consensus 107 ~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS~ 147 (189)
++-|-+-|....+..+|+-+. +.++.|+ ||++++|+.
T Consensus 82 G~T~Hfd~Va~~vs~Gl~~v~----L~~~vPV~~GVLT~~~~ 119 (158)
T 1di0_A 82 GGIYDHDFVATAVINGMMQVQ----LETEVPVLSVVLTPHHF 119 (158)
T ss_dssp CSSBCCHHHHHHHHHHHHHHH----HHHCCCEEEEEECBSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHH----HHCCCCEEEEECCCCCH
T ss_conf 997088999999999999998----61099879996289988
No 8
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=1.00 E-value=1 Score=14.95 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCC
Q ss_conf 55799888999999998543468887788--------8657407999999999999873023263229974-00026994
Q 029685 76 EETIPSWAKPDSDEPPPWATDEGKGLTSQ--------GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDS 146 (189)
Q Consensus 76 ~e~~pswAkp~sde~PPWaR~E~~~~~a~--------~~~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS 146 (189)
++++--+--||+=|.|-=+++-.+...-+ =.++-|-+-|....+..+|+-+. +.++.|+ ||++++|+
T Consensus 45 ~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~Gl~~v~----l~~~vPV~~GVLT~~~ 120 (154)
T 1rvv_A 45 TNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAA----NTTGVPVIFGIVTTEN 120 (154)
T ss_dssp GGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHH----HHHCSCEEEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHCCCEEEEECCCCC
T ss_conf 045589988858899999999985499778999621053886188999999999999998----6209987999618898
Q ss_pred CCCC
Q ss_conf 2212
Q 029685 147 IFYA 150 (189)
Q Consensus 147 ~lya 150 (189)
.--|
T Consensus 121 ~eQA 124 (154)
T 1rvv_A 121 IEQA 124 (154)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 9
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=1.00 E-value=1 Score=14.94 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCCC
Q ss_conf 5799888999999998543468887788--------8657407999999999999873023263229974-000269942
Q 029685 77 ETIPSWAKPDSDEPPPWATDEGKGLTSQ--------GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDSI 147 (189)
Q Consensus 77 e~~pswAkp~sde~PPWaR~E~~~~~a~--------~~~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS~ 147 (189)
+++.-+--||+=|.|-=+++-.+.+.-+ =.++.|-+-|....+.-+|+-+. +.++.|+ ||++++|+.
T Consensus 52 ~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~----L~~~vPV~~GVLT~~~~ 127 (159)
T 1kz1_A 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVG----LDSGVPVILGLLTVLNE 127 (159)
T ss_dssp GGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHH----HHHCCCEEEEEEEESSH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH----HHCCCCEEEEEECCCCH
T ss_conf 13489988868899999999974499778999413424986288999999999999998----61299879998479999
Q ss_pred C
Q ss_conf 2
Q 029685 148 F 148 (189)
Q Consensus 148 l 148 (189)
-
T Consensus 128 e 128 (159)
T 1kz1_A 128 E 128 (159)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=1.00 E-value=1 Score=14.87 Aligned_cols=70 Identities=26% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHH-----------------HHHHHHHHHCCE------
Q ss_conf 755799888999999998543468887788--8657407999999-----------------999999873023------
Q 029685 75 SEETIPSWAKPDSDEPPPWATDEGKGLTSQ--GSFEIPFYVYLLT-----------------STITAIAAIGSI------ 129 (189)
Q Consensus 75 ~~e~~pswAkp~sde~PPWaR~E~~~~~a~--~~~~lPf~~yLl~-----------------ScItAIAAVGSI------ 129 (189)
.++.+--+--||+=|+|-=+++-.++..-+ ....-.--.=|+. .-+-||-|+|+|
T Consensus 47 ~~~~I~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DAVIaLG~VIrGeT~ 126 (200)
T 1c41_A 47 KESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETM 126 (200)
Q ss_pred -EEEECCCCCCCCCCC
Q ss_conf -263229974000269
Q 029685 130 -FEYVNKNPVFGILNS 144 (189)
Q Consensus 130 -FEls~g~P~fGv~~t 144 (189)
|||....---|+..-
T Consensus 127 HfeyVa~~vs~GLm~v 142 (200)
T 1c41_A 127 HFEYIADSVSHGLMRV 142 (200)
Done!