Query 029686
Match_columns 189
No_of_seqs 213 out of 1486
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 16:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03516 ppisom_GldI peptidyl 99.9 1.8E-26 3.9E-31 182.7 11.7 142 31-184 16-160 (177)
2 COG0545 FkpA FKBP-type peptidy 99.9 7.6E-26 1.6E-30 179.9 11.1 104 73-184 85-189 (205)
3 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-23 2.7E-28 147.6 8.9 90 90-185 2-93 (108)
4 PRK11570 peptidyl-prolyl cis-t 99.9 4.1E-22 8.9E-27 161.3 12.8 103 74-184 87-190 (206)
5 KOG0549 FKBP-type peptidyl-pro 99.9 1.4E-21 3.1E-26 152.7 8.2 89 90-184 69-160 (188)
6 KOG0552 FKBP-type peptidyl-pro 99.8 2.2E-20 4.8E-25 151.6 10.1 90 85-181 116-208 (226)
7 PRK10902 FKBP-type peptidyl-pr 99.8 5.2E-20 1.1E-24 154.3 12.6 96 78-181 135-231 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.7 5.7E-17 1.2E-21 115.0 8.7 73 103-181 4-77 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.6 5.4E-16 1.2E-20 120.6 8.2 72 103-180 4-76 (156)
10 COG1047 SlpA FKBP-type peptidy 99.5 2.5E-14 5.4E-19 112.1 8.5 73 103-181 2-75 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.5 2.4E-13 5.3E-18 109.0 8.4 72 103-181 2-74 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.1 4.2E-10 9.1E-15 98.0 10.4 87 88-184 83-174 (397)
13 TIGR00115 tig trigger factor. 98.6 2.2E-07 4.7E-12 82.3 8.2 72 102-182 145-217 (408)
14 KOG0543 FKBP-type peptidyl-pro 98.6 6.4E-08 1.4E-12 84.5 4.5 62 97-165 1-63 (397)
15 PRK01490 tig trigger factor; P 98.4 9.5E-07 2.1E-11 78.8 8.8 69 102-179 156-225 (435)
16 COG0544 Tig FKBP-type peptidyl 98.4 7E-07 1.5E-11 80.0 7.0 64 104-176 158-224 (441)
17 KOG0545 Aryl-hydrocarbon recep 97.9 5.3E-06 1.1E-10 68.9 2.2 78 88-171 9-91 (329)
18 PLN00042 photosystem II oxygen 76.5 6.3 0.00014 33.1 5.2 23 35-57 44-66 (260)
19 COG0024 Map Methionine aminope 58.4 25 0.00054 29.6 5.3 56 101-165 84-145 (255)
20 TIGR00501 met_pdase_II methion 57.3 18 0.00038 30.8 4.3 56 101-165 72-129 (295)
21 PHA02122 hypothetical protein 56.8 20 0.00044 23.0 3.4 21 105-126 39-59 (65)
22 PF01346 FKBP_N: Domain amino 52.3 11 0.00024 27.4 2.0 16 80-95 109-124 (124)
23 PTZ00053 methionine aminopepti 49.5 19 0.00041 33.0 3.4 56 101-165 231-288 (470)
24 PF11874 DUF3394: Domain of un 49.1 43 0.00092 26.8 5.0 57 104-170 72-129 (183)
25 cd01090 Creatinase Creatine am 45.9 77 0.0017 25.6 6.3 33 101-140 74-106 (228)
26 PRK08671 methionine aminopepti 43.6 36 0.00078 28.8 4.1 56 101-165 69-126 (291)
27 cd01088 MetAP2 Methionine Amin 38.5 91 0.002 26.3 5.8 57 100-165 67-125 (291)
28 PF07076 DUF1344: Protein of u 36.5 1.1E+02 0.0023 20.1 4.5 39 83-123 17-55 (61)
29 TIGR00495 crvDNA_42K 42K curve 36.5 45 0.00097 29.6 3.7 31 102-139 99-129 (389)
30 cd01089 PA2G4-like Related to 36.5 1.5E+02 0.0033 23.7 6.6 32 102-140 81-112 (228)
31 PF05688 DUF824: Salmonella re 34.7 83 0.0018 19.4 3.6 35 102-141 7-41 (47)
32 PRK12897 methionine aminopepti 30.0 2.2E+02 0.0047 23.2 6.6 33 101-140 82-114 (248)
33 PRK00226 greA transcription el 28.2 60 0.0013 24.8 2.8 24 143-172 122-146 (157)
34 PLN03158 methionine aminopepti 27.5 2.2E+02 0.0049 25.4 6.6 52 101-165 215-275 (396)
35 PRK12896 methionine aminopepti 27.0 2.5E+02 0.0054 22.6 6.5 33 101-140 88-120 (255)
36 TIGR00500 met_pdase_I methioni 26.7 2.7E+02 0.0057 22.4 6.5 33 101-140 81-113 (247)
37 PLN00044 multi-copper oxidase- 24.6 1.1E+02 0.0025 28.8 4.4 35 85-119 38-79 (596)
38 PF11012 DUF2850: Protein of u 24.5 1.2E+02 0.0027 20.8 3.4 40 103-142 12-52 (79)
39 PRK12318 methionine aminopepti 24.4 2.7E+02 0.0059 23.5 6.3 33 101-140 123-155 (291)
40 cd01086 MetAP1 Methionine Amin 24.2 3.1E+02 0.0067 21.8 6.5 33 101-140 73-105 (238)
41 PF09122 DUF1930: Domain of un 22.4 1.3E+02 0.0028 19.8 3.0 21 145-171 35-56 (68)
42 PRK05716 methionine aminopepti 22.3 3.5E+02 0.0076 21.7 6.4 34 100-140 82-115 (252)
43 TIGR02993 ectoine_eutD ectoine 20.4 2.3E+02 0.005 24.8 5.3 51 102-165 236-295 (391)
No 1
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.94 E-value=1.8e-26 Score=182.66 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=122.8
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHhhhcCccchhhhhhHhhhhcCCCCCCeeecCCCcEEEEEec--CCCCCCCCCC
Q 029686 31 TKQQQQQLSFDPKKRFFEVGIGLLASSVIALTPLEADATRIEYYATTADPPCEFSFARSGLGYCDIAS--GSGVEAPYGE 108 (189)
Q Consensus 31 ~c~~~~~~~~~~rr~~~~~~~~~la~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~Gl~y~~~~~--G~G~~~~~gd 108 (189)
+|+.||+ |||+...+.+++..++.++..+.+.++........+++...+.++++|++|.++++ |+|..|+.||
T Consensus 16 ~c~~~~~-----~~pv~~~~~~~~~~s~~rnk~l~~~e~~~I~~~i~~~~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd 90 (177)
T TIGR03516 16 GCKTPEA-----RRPISRSSGTTIKLSAERNKKLIAAEEAAIKRIISADSIVKYETSQNGFWYYYNQKDTGEGTTPEFGD 90 (177)
T ss_pred hcCCCCC-----CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceECCCccEEEEEEecCCCCCcCCCCC
Confidence 4776766 88888888889999999987776665554444444556788999999999999977 6667799999
Q ss_pred EEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCCCCce
Q 029686 109 LINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRARTCRM 184 (189)
Q Consensus 109 ~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~~~~i 184 (189)
.|.+||++++.||++|+++++. .|+.|.+|.+++++||+++|.+ |++||+ +|+||+++|||++|.++.|
T Consensus 91 ~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~------Mk~Ge~~~~~iP~~~AYG~~g~~~~I 160 (177)
T TIGR03516 91 LVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKL------MKEGETATFLFPSHKAYGYYGDQNKI 160 (177)
T ss_pred EEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcC------CCCCCEEEEEECHHHcCCCCCCCCCc
Confidence 9999999999999999999875 5999999999999999999999 999999 9999999999999988776
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.6e-26 Score=179.92 Aligned_cols=104 Identities=32% Similarity=0.523 Sum_probs=94.5
Q ss_pred hhhhcCCCCCCeeecCCCcEEEEEecCCCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHc
Q 029686 73 YYATTADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGIL 152 (189)
Q Consensus 73 ~~~~~~~~~~~~~~~~~Gl~y~~~~~G~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~ 152 (189)
.+...+.+.....++++||+|++++.|+|..|..+|+|.|||++++.||++||+++++|+|+.|.+| ++|+||+++|.
T Consensus 85 ~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 85 AFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred HHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence 3444555667788999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CCCCCCCccCCce-EEEecCCCCCCCCCCCCce
Q 029686 153 GGDGVPPMHVGTW-KTQTPDSTRVSIRARTCRM 184 (189)
Q Consensus 153 g~~~~~~mk~Ge~-~v~iP~~layG~~g~~~~i 184 (189)
+ |++|++ +++|||++|||.+|.++-|
T Consensus 163 ~------M~vG~k~~l~IP~~laYG~~g~~g~I 189 (205)
T COG0545 163 G------MKVGGKRKLTIPPELAYGERGVPGVI 189 (205)
T ss_pred h------CCCCceEEEEeCchhccCcCCCCCCC
Confidence 8 999999 9999999999999954433
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-23 Score=147.56 Aligned_cols=90 Identities=34% Similarity=0.533 Sum_probs=85.6
Q ss_pred CcEEEEEecCCCC-CCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EE
Q 029686 90 GLGYCDIASGSGV-EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KT 167 (189)
Q Consensus 90 Gl~y~~~~~G~G~-~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v 167 (189)
|+..+++..|+|. .|+.||+|++||++.+.||+.|||+.+++.|+.|.+|.+++|+||+|++.. |.+|++ ++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~q------msvGekakL 75 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQ------MSVGEKAKL 75 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchh------cccccccee
Confidence 6888999999995 499999999999999999999999999999999999999999999998888 999999 99
Q ss_pred EecCCCCCCCCCCCCcee
Q 029686 168 QTPDSTRVSIRARTCRML 185 (189)
Q Consensus 168 ~iP~~layG~~g~~~~i~ 185 (189)
.|+|++|||.+|.++.|-
T Consensus 76 ti~pd~aYG~~G~p~~Ip 93 (108)
T KOG0544|consen 76 TISPDYAYGPRGHPGGIP 93 (108)
T ss_pred eeccccccCCCCCCCccC
Confidence 999999999999988873
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=4.1e-22 Score=161.27 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=93.2
Q ss_pred hhhcCCCCCCeeecCCCcEEEEEecCCCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcC
Q 029686 74 YATTADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILG 153 (189)
Q Consensus 74 ~~~~~~~~~~~~~~~~Gl~y~~~~~G~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g 153 (189)
+...+.+...++++++|++|+++++|+|..|+.+|.|.|||++++.||++|++++++++|+.|.++ .+++||+++|.+
T Consensus 87 fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~ 164 (206)
T PRK11570 87 FLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTL 164 (206)
T ss_pred HHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcC
Confidence 333344566889999999999999999999999999999999999999999999998899999994 799999999999
Q ss_pred CCCCCCccCCce-EEEecCCCCCCCCCCCCce
Q 029686 154 GDGVPPMHVGTW-KTQTPDSTRVSIRARTCRM 184 (189)
Q Consensus 154 ~~~~~~mk~Ge~-~v~iP~~layG~~g~~~~i 184 (189)
|++|++ +|+||++++||.+|.+..|
T Consensus 165 ------M~~G~k~~~~IP~~lAYG~~g~~~~I 190 (206)
T PRK11570 165 ------MPVGSKWELTIPHELAYGERGAGASI 190 (206)
T ss_pred ------CCCCCEEEEEECHHHcCCCCCCCCCc
Confidence 999999 9999999999999876554
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-21 Score=152.72 Aligned_cols=89 Identities=38% Similarity=0.591 Sum_probs=79.0
Q ss_pred CcEEEEEecC--CCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-E
Q 029686 90 GLGYCDIASG--SGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-K 166 (189)
Q Consensus 90 Gl~y~~~~~G--~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~ 166 (189)
+++..++.+- -..+.+.||+|.+||++.+.||++|||||.+++|++|++|.+++|+||+++|.| |++||+ +
T Consensus 69 ~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~g------MCvGEkRk 142 (188)
T KOG0549|consen 69 ELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLG------MCVGEKRK 142 (188)
T ss_pred ceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhh------hCcccceE
Confidence 3444444442 356689999999999999999999999999999999999999999999999999 999999 9
Q ss_pred EEecCCCCCCCCCCCCce
Q 029686 167 TQTPDSTRVSIRARTCRM 184 (189)
Q Consensus 167 v~iP~~layG~~g~~~~i 184 (189)
+.|||+++||++|.+.+|
T Consensus 143 l~IPp~LgYG~~G~~~~I 160 (188)
T KOG0549|consen 143 LIIPPHLGYGERGAPPKI 160 (188)
T ss_pred EecCccccCccCCCCCCC
Confidence 999999999999976655
No 6
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-20 Score=151.65 Aligned_cols=90 Identities=33% Similarity=0.611 Sum_probs=85.5
Q ss_pred eecCCCcEEEEEecCCCCCCCCCCEEEEEEEEEec-CCcEEeccccCCccEE-EEeCCCChhHHHHHHHcCCCCCCCccC
Q 029686 85 SFARSGLGYCDIASGSGVEAPYGELINVHYTARFA-DGIIFDSSYKRARPLT-MRIGVGKVIKGLDQGILGGDGVPPMHV 162 (189)
Q Consensus 85 ~~~~~Gl~y~~~~~G~G~~~~~gd~V~v~y~~~~~-~G~~~~ss~~~g~p~~-f~lG~~~~i~G~~~~l~g~~~~~~mk~ 162 (189)
.++++|++|++++.|+|+.+..|++|.+||.+++. +|++||+++.. .|+. |.+|.+++|+||+.+|.| |++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~G------Mkv 188 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEG------MKV 188 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhh------hcc
Confidence 57899999999999999999999999999999998 99999999865 5888 999999999999999999 999
Q ss_pred Cce-EEEecCCCCCCCCCCC
Q 029686 163 GTW-KTQTPDSTRVSIRART 181 (189)
Q Consensus 163 Ge~-~v~iP~~layG~~g~~ 181 (189)
|++ +|+|||++|||.+|.+
T Consensus 189 GGkRrviIPp~lgYg~~g~~ 208 (226)
T KOG0552|consen 189 GGKRRVIIPPELGYGKKGVP 208 (226)
T ss_pred CCeeEEEeCccccccccCcC
Confidence 999 9999999999998865
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=5.2e-20 Score=154.29 Aligned_cols=96 Identities=25% Similarity=0.370 Sum_probs=89.2
Q ss_pred CCCCCCeeecCCCcEEEEEecCCCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCC
Q 029686 78 ADPPCEFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGV 157 (189)
Q Consensus 78 ~~~~~~~~~~~~Gl~y~~~~~G~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~ 157 (189)
..+...++++++|++|+++++|+|..|+.||.|.|||++++.||++|+++++++.|+.|.+ +.+++||+++|.+
T Consensus 135 ~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~---- 208 (269)
T PRK10902 135 FAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKN---- 208 (269)
T ss_pred hccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhc----
Confidence 3445678899999999999999999999999999999999999999999999889999998 5799999999999
Q ss_pred CCccCCce-EEEecCCCCCCCCCCC
Q 029686 158 PPMHVGTW-KTQTPDSTRVSIRART 181 (189)
Q Consensus 158 ~~mk~Ge~-~v~iP~~layG~~g~~ 181 (189)
|++|++ +|+||++++||..|.+
T Consensus 209 --Mk~Gek~~l~IP~~laYG~~g~~ 231 (269)
T PRK10902 209 --IKKGGKIKLVIPPELAYGKAGVP 231 (269)
T ss_pred --CCCCcEEEEEECchhhCCCCCCC
Confidence 999999 9999999999999864
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.71 E-value=5.7e-17 Score=115.04 Aligned_cols=73 Identities=34% Similarity=0.695 Sum_probs=69.5
Q ss_pred CCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCCC
Q 029686 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRART 181 (189)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~~ 181 (189)
.++.||.|.+||++++.||++|++++..+.|+.|.+|.+++++||+++|.+ |++|++ +|+||++++||..+..
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~------m~~Ge~~~~~vp~~~ayg~~~~~ 77 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIG------MKVGEKREFYVPPELAYGEKGLE 77 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTT------SBTTEEEEEEEEGGGTTTTTTBC
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhccc------ccCCCEeeeEeCChhhcCccccC
Confidence 489999999999999999999999988888999999999999999999999 999999 9999999999998863
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.64 E-value=5.4e-16 Score=120.58 Aligned_cols=72 Identities=24% Similarity=0.446 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCC
Q 029686 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRAR 180 (189)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~ 180 (189)
.++.||.|.+||++++.||++|+++++.++|+.|.+|.+++++||+++|.+ |++|++ +|.|||++|||.+.+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~g------m~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLG------LKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcC------CCCCCEEEEEEChHHhcCCCCh
Confidence 578999999999999999999999998788999999999999999999999 999999 999999999998764
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.5e-14 Score=112.09 Aligned_cols=73 Identities=27% Similarity=0.549 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCCC
Q 029686 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRART 181 (189)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~~ 181 (189)
.+++||.|.+||++++.||++||+|.+...|+.|.+|.+++++||+++|.| |.+|++ ++.|||+.|||.+.+.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g------~~~Ge~~~V~IpPE~AfGe~~~~ 75 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLG------KEVGEEFTVEIPPEDAFGEYDPD 75 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhC------CCCCceeEEEeCchHhcCCCChH
Confidence 468999999999999999999999988567999999999999999999999 999999 9999999999998754
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.46 E-value=2.4e-13 Score=109.01 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCCC
Q 029686 103 EAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRART 181 (189)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~~ 181 (189)
++++++.|+++|++++.||++|++++. ..|+.|.+|.++++++|+++|.+ |++|++ +|.|||+.|||.+.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G------~~~Gd~~~v~l~peeAyGe~d~~ 74 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEG------HEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcC------CCCCCEEEEEEChHHhcCCCChH
Confidence 367899999999999999999999976 47999999999999999999999 999999 9999999999998764
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.2e-10 Score=98.01 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=74.6
Q ss_pred CCCcEEEEEecCCC--CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC-CChhHHHHHHHcCCCCCCCccCCc
Q 029686 88 RSGLGYCDIASGSG--VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV-GKVIKGLDQGILGGDGVPPMHVGT 164 (189)
Q Consensus 88 ~~Gl~y~~~~~G~G--~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~-~~~i~G~~~~l~g~~~~~~mk~Ge 164 (189)
+.+|..+++++|.| ..|.+|..|.|||.+++.|+ +|+++. ..+.|..|. ..++.||+.+|.. |++|+
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~------M~~GE 152 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRM------MKVGE 152 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHh------cCccc
Confidence 88999999999999 56999999999999999766 887763 347888887 4799999999988 99999
Q ss_pred e-EEEecCCCCCC-CCCCCCce
Q 029686 165 W-KTQTPDSTRVS-IRARTCRM 184 (189)
Q Consensus 165 ~-~v~iP~~layG-~~g~~~~i 184 (189)
. .|+|+|+++|| ..+.+.+|
T Consensus 153 ~a~v~i~~~YayG~~~~~~p~I 174 (397)
T KOG0543|consen 153 VALVTIDPKYAYGEEGGEPPLI 174 (397)
T ss_pred eEEEEeCcccccCCCCCCCCCC
Confidence 9 99999999999 44555554
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.57 E-value=2.2e-07 Score=82.27 Aligned_cols=72 Identities=18% Similarity=0.385 Sum_probs=62.8
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCCC
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRAR 180 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g~ 180 (189)
..++.||.|.++|+++. ||+.|+++. ..++.|.+|.+.+++||+++|.| |++|++ .|.+|....|+...-
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G------~k~Gd~~~~~v~~p~~~~~~~~ 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVG------MKAGEEKEIKVTFPEDYHAEEL 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCC------CCCCCeeEEEecCccccCcccC
Confidence 35789999999999976 999998874 35899999999999999999999 999999 999998888887654
Q ss_pred CC
Q 029686 181 TC 182 (189)
Q Consensus 181 ~~ 182 (189)
.+
T Consensus 216 ~g 217 (408)
T TIGR00115 216 AG 217 (408)
T ss_pred CC
Confidence 33
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.4e-08 Score=84.51 Aligned_cols=62 Identities=40% Similarity=0.689 Sum_probs=56.1
Q ss_pred ecCCCCC-CCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce
Q 029686 97 ASGSGVE-APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 97 ~~G~G~~-~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
++|.|.. |..||.|.+||++++.||+.||++.+ +.|+.|.+|.+.+|.||+.++.. |+.|+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~t------m~~g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVAT------MKKGEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccc------cccccc
Confidence 3678865 99999999999999999999999998 88999999999999999987776 997766
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.43 E-value=9.5e-07 Score=78.84 Aligned_cols=69 Identities=19% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEecCCCCCCCCC
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTPDSTRVSIRA 179 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~layG~~g 179 (189)
..++.||.|+++|++.. ||+.|++.. ..++.|.+|.+.+++||+++|.| |++|++ .|.++....|+...
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G------~k~Ge~~~~~~~~p~~~~~~~ 225 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVG------MKAGEEKTIDVTFPEDYHAED 225 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCC------CCCCCeeEEEecCcccccccc
Confidence 35799999999999997 999998764 35899999999999999999999 999999 88887777776543
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7e-07 Score=79.97 Aligned_cols=64 Identities=22% Similarity=0.531 Sum_probs=55.4
Q ss_pred CCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce---EEEecCCCCCC
Q 029686 104 APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW---KTQTPDSTRVS 176 (189)
Q Consensus 104 ~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~---~v~iP~~layG 176 (189)
++.||.|+|+|.++. ||..|.+... ..+.|.+|.+++|+||+++|.| |++|++ .+.+|.++.-+
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG------~k~Ge~k~i~vtFP~dy~a~ 224 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVG------MKAGEEKDIKVTFPEDYHAE 224 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhcc------CcCCCeeEEEEEcccccchh
Confidence 899999999999976 9999988643 4699999999999999999999 999999 47777665543
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.3e-06 Score=68.93 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=68.6
Q ss_pred CCCcEEEEEecCCCCC--CCCCCEEEEEEEEEec--CCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCC
Q 029686 88 RSGLGYCDIASGSGVE--APYGELINVHYTARFA--DGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVG 163 (189)
Q Consensus 88 ~~Gl~y~~~~~G~G~~--~~~gd~V~v~y~~~~~--~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~G 163 (189)
-.|++..++..|+|+- ..+|..|.+||..... .++++|+++..|+|..+.+|+.--++-|+..|.. |+++
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~t------M~v~ 82 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTT------MRVH 82 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHH------Hhhh
Confidence 3679999999999976 5699999999998764 3679999999999999999999899999999999 9999
Q ss_pred ce-EEEecC
Q 029686 164 TW-KTQTPD 171 (189)
Q Consensus 164 e~-~v~iP~ 171 (189)
|. .|++.-
T Consensus 83 EvaqF~~d~ 91 (329)
T KOG0545|consen 83 EVAQFWCDT 91 (329)
T ss_pred hHHHhhhhh
Confidence 99 877653
No 18
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=76.50 E-value=6.3 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=11.7
Q ss_pred cccccCCCCchhHHHHHHHHHHH
Q 029686 35 QQQLSFDPKKRFFEVGIGLLASS 57 (189)
Q Consensus 35 ~~~~~~~~rr~~~~~~~~~la~~ 57 (189)
.+.+...+||..|.+.++.++..
T Consensus 44 ~~~~~~~srr~~l~~~~ga~a~~ 66 (260)
T PLN00042 44 EEDNSAVSRRAALALLAGAAAAG 66 (260)
T ss_pred ccccccccHHHHHHHHHHHHHhh
Confidence 33334456676665555543333
No 19
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=58.42 E-value=25 Score=29.57 Aligned_cols=56 Identities=18% Similarity=0.402 Sum_probs=37.9
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC------ChhHHHHHHHcCCCCCCCccCCce
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG------KVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~------~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
...+++||.|.+++.... ||-.-|+. .+|.+|.. .++..-+++|.. |+..+|+|-+
T Consensus 84 ~~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~--~I~~vkpG~~ 145 (255)
T COG0024 84 KKVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYA--GIEAVKPGAR 145 (255)
T ss_pred CcccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHH--HHHhccCCCC
Confidence 345899999999999886 88777754 77888742 255554444443 4444777765
No 20
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=57.30 E-value=18 Score=30.77 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=35.8
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC--ChhHHHHHHHcCCCCCCCccCCce
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG--KVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~--~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
...+++||.|.+++-... ||-.-|.+ .+|.+|.. .++....+++.. ++..||+|-+
T Consensus 72 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~a--ai~~~kPGv~ 129 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYT--AIKEIRAGVR 129 (295)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHH--HHHHhcCCCC
Confidence 445899999999987665 88766644 56667653 345444444433 4444777765
No 21
>PHA02122 hypothetical protein
Probab=56.83 E-value=20 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.4
Q ss_pred CCCCEEEEEEEEEecCCcEEec
Q 029686 105 PYGELINVHYTARFADGIIFDS 126 (189)
Q Consensus 105 ~~gd~V~v~y~~~~~~G~~~~s 126 (189)
..||.|.++|++.. ||+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 46999999999986 8887753
No 22
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=52.32 E-value=11 Score=27.38 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=11.8
Q ss_pred CCCCeeecCCCcEEEE
Q 029686 80 PPCEFSFARSGLGYCD 95 (189)
Q Consensus 80 ~~~~~~~~~~Gl~y~~ 95 (189)
+...++++++||+|++
T Consensus 109 k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 109 KKEGVKTTESGLQYKV 124 (124)
T ss_dssp TSTTEEE-TTS-EEEE
T ss_pred CCCCCEECCCCCeeeC
Confidence 4578999999999986
No 23
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=49.55 E-value=19 Score=32.97 Aligned_cols=56 Identities=11% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC--ChhHHHHHHHcCCCCCCCccCCce
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG--KVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~--~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
...++.||.|.|++-..+ ||-..|.+ .+|.+|.. .++....+|+.. |+..+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~a--aI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNT--GIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHH--HHHHhcCCCc
Confidence 345899999999999876 89888865 45556632 344444444433 3444777655
No 24
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=49.08 E-value=43 Score=26.77 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCChhHHHHHHHcCCCCCCCccCCce-EEEec
Q 029686 104 APYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGKVIKGLDQGILGGDGVPPMHVGTW-KTQTP 170 (189)
Q Consensus 104 ~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP 170 (189)
..+|+.+.+.+.+.+.+|+.... .+.+.++++. .|-+. |.. -|+.++.+|++ .+-.+
T Consensus 72 ~~~g~~lrl~V~G~~~~G~~~~k------~v~lpl~~~~--~g~eR-L~~-~GL~l~~e~~~~~Vd~v 129 (183)
T PF11874_consen 72 LPPGSSLRLRVEGPDFEGDPVTK------TVLLPLGDGA--DGEER-LEA-AGLTLMEEGGKVIVDEV 129 (183)
T ss_pred CCCCCEEEEEEEccCCCCCceEE------EEEEEcCCCC--CHHHH-HHh-CCCEEEeeCCEEEEEec
Confidence 56789999999988878877653 3677777664 33222 222 26777899998 66655
No 25
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=45.90 E-value=77 Score=25.60 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
...+++||.|.+++-..+ +|..-|.+ .+|.+|+
T Consensus 74 ~r~l~~GD~v~~d~g~~~-~GY~ad~~------RT~~vG~ 106 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI-AGYYTALE------RTLFLDE 106 (228)
T ss_pred CcccCCCCEEEEEEeEEE-CCEeeeeE------EEEECCC
Confidence 355899999999988765 77554433 5566663
No 26
>PRK08671 methionine aminopeptidase; Provisional
Probab=43.62 E-value=36 Score=28.75 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC--ChhHHHHHHHcCCCCCCCccCCce
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG--KVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~--~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
...+++||.|.+++-... ||-.-|.+ .++.+|.. .++....+++.. ++..+|+|-+
T Consensus 69 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~a--ai~~ikpG~~ 126 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEA--AIEVVRPGVS 126 (291)
T ss_pred CcccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHH--HHHHhcCCCC
Confidence 345899999999987654 88766644 45666632 344444444433 4444777755
No 27
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=38.52 E-value=91 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC--ChhHHHHHHHcCCCCCCCccCCce
Q 029686 100 SGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG--KVIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 100 ~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~--~~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
+...+++||.|.++.-... ||-.-|.+ .+|.+|.. .++....+++.. ++..||+|-+
T Consensus 67 d~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~--ai~~ikPG~~ 125 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNA--AIKEAGPDVR 125 (291)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHH--HHHHhcCCCc
Confidence 3456899999999987665 88655543 45666542 233333333332 3334777765
No 28
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=36.51 E-value=1.1e+02 Score=20.05 Aligned_cols=39 Identities=18% Similarity=-0.039 Sum_probs=27.7
Q ss_pred CeeecCCCcEEEEEecCCCCCCCCCCEEEEEEEEEecCCcE
Q 029686 83 EFSFARSGLGYCDIASGSGVEAPYGELINVHYTARFADGII 123 (189)
Q Consensus 83 ~~~~~~~Gl~y~~~~~G~G~~~~~gd~V~v~y~~~~~~G~~ 123 (189)
...+.++|=.|+.-.+=+=+.+++|..|.|+|... +|+.
T Consensus 17 ~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~ 55 (61)
T PF07076_consen 17 MTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKR 55 (61)
T ss_pred eEEEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcE
Confidence 34577888888754444445689999999999865 4543
No 29
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=36.51 E-value=45 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeC
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIG 139 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG 139 (189)
..++.||.|.+++-..+ ||-.-|.. .+|.+|
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG 129 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALVA------HTFVVG 129 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEEE------EEEEEC
Confidence 45899999999998776 88766654 566676
No 30
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=36.45 E-value=1.5e+02 Score=23.73 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
..+++||.|.+++-..+ +|-.-|-+ .+|.+|.
T Consensus 81 ~~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~ 112 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGA 112 (228)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCC
Confidence 45899999999987765 77655543 4566664
No 31
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=34.71 E-value=83 Score=19.38 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG 141 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~ 141 (189)
.+++.|+.+.+..+.++.+|..+.. .+|.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 3478999999999999888876643 4677776643
No 32
>PRK12897 methionine aminopeptidase; Reviewed
Probab=30.04 E-value=2.2e+02 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
+..+++||.|.+++-..+ +|-.-|.+ .+|.+|.
T Consensus 82 ~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~ 114 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGK 114 (248)
T ss_pred CcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCC
Confidence 456899999999998765 67655543 5566664
No 33
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.15 E-value=60 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=19.6
Q ss_pred hhHHHHHHHcCCCCCCCccCCce-EEEecCC
Q 029686 143 VIKGLDQGILGGDGVPPMHVGTW-KTQTPDS 172 (189)
Q Consensus 143 ~i~G~~~~l~g~~~~~~mk~Ge~-~v~iP~~ 172 (189)
+..-+..+|.| .++|+. .+..|..
T Consensus 122 ~~SPlG~aLlG------k~~Gd~v~~~~p~g 146 (157)
T PRK00226 122 IESPIARALIG------KKVGDTVEVTTPGG 146 (157)
T ss_pred cCChHHHHHhC------CCCCCEEEEEcCCC
Confidence 34568899999 999999 9888863
No 34
>PLN03158 methionine aminopeptidase; Provisional
Probab=27.55 E-value=2.2e+02 Score=25.36 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCC-----Ch----hHHHHHHHcCCCCCCCccCCce
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVG-----KV----IKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~-----~~----i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
...+++||.|.++...++ +|-.-|-+ .+|.+|.- .+ ..+++.++.- +|+|-.
T Consensus 215 ~r~L~~GDiV~iDvg~~~-~GY~aD~t------RT~~VG~~~~e~~~l~e~~~eal~~aI~~------vkPGv~ 275 (396)
T PLN03158 215 ARKLEDGDIVNVDVTVYY-KGCHGDLN------ETFFVGNVDEASRQLVKCTYECLEKAIAI------VKPGVR 275 (396)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEeEE------eEEEcCCCCHHHHHHHHHHHHHHHHHHHH------cCCCCC
Confidence 455899999999998876 77554433 45666642 22 3444444444 787754
No 35
>PRK12896 methionine aminopeptidase; Reviewed
Probab=26.99 E-value=2.5e+02 Score=22.61 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
+..++.||.|.+++-..+ +|-.-|- ..+|.+|.
T Consensus 88 ~~~l~~Gd~v~iD~g~~~-~gY~aD~------~RT~~vG~ 120 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYL-DGYHGDT------GITFAVGP 120 (255)
T ss_pred CccCCCCCEEEEEEeEEE-CcEEEee------EEEEECCC
Confidence 355899999999988765 6654443 24566664
No 36
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=26.67 E-value=2.7e+02 Score=22.42 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
...+++||.|.+++-..+ +|..-|-+ .+|.+|.
T Consensus 81 ~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~ 113 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIY-DGYHGDTA------KTFLVGK 113 (247)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEcCC
Confidence 456899999999998765 67655433 4566664
No 37
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=24.59 E-value=1.1e+02 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=22.3
Q ss_pred eecCCC--cE-EEEEecCC--CCC--CCCCCEEEEEEEEEec
Q 029686 85 SFARSG--LG-YCDIASGS--GVE--APYGELINVHYTARFA 119 (189)
Q Consensus 85 ~~~~~G--l~-y~~~~~G~--G~~--~~~gd~V~v~y~~~~~ 119 (189)
..++.| .. ..+...|. |+. +..||.|.|+.+-.+.
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~ 79 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALD 79 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCC
Confidence 356777 33 34455553 665 6799999998766543
No 38
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=24.49 E-value=1.2e+02 Score=20.78 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecccc-CCccEEEEeCCCC
Q 029686 103 EAPYGELINVHYTARFADGIIFDSSYK-RARPLTMRIGVGK 142 (189)
Q Consensus 103 ~~~~gd~V~v~y~~~~~~G~~~~ss~~-~g~p~~f~lG~~~ 142 (189)
.+-.-|.+++.=.|...||.++...|+ +|+.+.|.+|.+.
T Consensus 12 a~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~~ 52 (79)
T PF11012_consen 12 APYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSGT 52 (79)
T ss_pred CCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCeE
Confidence 344556666666666667777666554 3456677766543
No 39
>PRK12318 methionine aminopeptidase; Provisional
Probab=24.41 E-value=2.7e+02 Score=23.46 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
...+++||.|.+++-... +|-.-|-+ .+|.+|.
T Consensus 123 ~~~l~~GD~V~vD~g~~~-~GY~aDit------RT~~vG~ 155 (291)
T PRK12318 123 DIPLKNGDIMNIDVSCIV-DGYYGDCS------RMVMIGE 155 (291)
T ss_pred CCccCCCCEEEEEEeEEE-CcEEEEEE------EEEECCC
Confidence 456899999999998775 77554433 5566664
No 40
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=24.21 E-value=3.1e+02 Score=21.79 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 101 GVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 101 G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
...+++||.|.+++-... +|..-+-+ .+|.+|+
T Consensus 73 ~~~l~~Gd~v~id~g~~~-~GY~ad~~------RT~~~G~ 105 (238)
T cd01086 73 DRVLKDGDIVNIDVGVEL-DGYHGDSA------RTFIVGE 105 (238)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEECCC
Confidence 455899999999988765 66544432 4566664
No 41
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=22.41 E-value=1.3e+02 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCCCCCccCCce-EEEecC
Q 029686 145 KGLDQGILGGDGVPPMHVGTW-KTQTPD 171 (189)
Q Consensus 145 ~G~~~~l~g~~~~~~mk~Ge~-~v~iP~ 171 (189)
+.+..++.. |..||+ ++++.+
T Consensus 35 ~El~sA~~H------lH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVH------LHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-------BTT-EEEEEETT
T ss_pred HHHHHHHHH------hhcCceeEEEEec
Confidence 457778888 999999 998876
No 42
>PRK05716 methionine aminopeptidase; Validated
Probab=22.27 E-value=3.5e+02 Score=21.70 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCC
Q 029686 100 SGVEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGV 140 (189)
Q Consensus 100 ~G~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~ 140 (189)
+...+++||.|.+++-..+ +|..-|-+ .+|.+|+
T Consensus 82 ~~~~l~~Gd~v~id~g~~~-~gY~~d~~------RT~~vG~ 115 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIK-DGYHGDTS------RTFGVGE 115 (252)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEeE------EEEECCC
Confidence 3456899999999998765 67655533 4566664
No 43
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=20.38 E-value=2.3e+02 Score=24.84 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEeccccCCccEEEEeCCCC---------hhHHHHHHHcCCCCCCCccCCce
Q 029686 102 VEAPYGELINVHYTARFADGIIFDSSYKRARPLTMRIGVGK---------VIKGLDQGILGGDGVPPMHVGTW 165 (189)
Q Consensus 102 ~~~~~gd~V~v~y~~~~~~G~~~~ss~~~g~p~~f~lG~~~---------~i~G~~~~l~g~~~~~~mk~Ge~ 165 (189)
..++.||.|.+++-+.+ +|-.-|- ..+|.+|... +..+.+.++.. ||+|-+
T Consensus 236 ~~l~~gd~v~iD~g~~~-~GY~sD~------tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~------ikpG~~ 295 (391)
T TIGR02993 236 SPMKVGEGTFFEIAGCY-KRYHCPL------SRTVFLGKPTQAFLDAEKAVLEGMEAGLEA------AKPGNT 295 (391)
T ss_pred CcccCCCEEEEEeeeec-ccCccce------eEEEEcCCCCHHHHHHHHHHHHHHHHHHHH------cCCCCc
Confidence 45789999999987665 5543332 3566666432 34444545554 788876
Done!