BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029690
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 98/118 (83%), Gaps = 5/118 (4%)
Query: 60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
T S++ SVHDF+VKDAK DVDLSI+KGK+LLIVNVAS+CG+TNSNY E++QLY+KYK
Sbjct: 3 TQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYK 62
Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKFYK 172
+QGLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIFDK+ A LY+F K
Sbjct: 63 DQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 74/113 (65%), Gaps = 5/113 (4%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S+++F V A G+ DLS +KG LLI NVAS+CG T Y + LY+KYK QG +LA
Sbjct: 4 SIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVLA 63
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV-----LALQLYKFYKQKI 175
FPCNQF QEPG +++EFACTRFKA+FPI K+ A LY+F K I
Sbjct: 64 FPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATI 116
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+S+ DF V DA + +L +KG LLI NVAS+CG T Y + LY+KYK+QG +L
Sbjct: 26 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL 85
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV-----LALQLYKFYKQ 173
AFPCNQFG QEPG+ E+I+EF CT+FKAEFPI K+ A LY++ K+
Sbjct: 86 AFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKK 137
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 54 ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
+SR + AS S+ DF V DA + +L +KG LLI NVAS+CG T Y +
Sbjct: 15 SSRKKMSAAS----SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATT 70
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV-----LALQLY 168
LY+KYK+QG +LAFP NQFG QEPG+ E+I+EF CT+FKAEFPI K+ A LY
Sbjct: 71 LYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLY 130
Query: 169 KFYKQ 173
++ K+
Sbjct: 131 EYMKK 135
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+S+ DF V DA + +L +KG LLI NVAS+CG T Y + LY+KYK+QG +L
Sbjct: 4 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL 63
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV-----LALQLYKFYKQ 173
AFP NQFG QEPG+ E+I+EF CT+FKAEFPI K+ A LY++ K+
Sbjct: 64 AFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKK 115
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 54 ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
ASR D A S+H+FS KD G V+L Y+G + ++ NVASQCG T NYT+L
Sbjct: 16 ASRDDWRCAR----SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVD 71
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLY 168
L+ +Y GL ILAFPCNQFG QEPG NE+I+EFA + +F +F K+ A L+
Sbjct: 72 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLW 130
Query: 169 KFYKQKIHSHG 179
K+ K + G
Sbjct: 131 KWMKIQPKGKG 141
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
+ +S S+++F+VKD G DV L Y+G + LIVNVA + G T+ NY +L +++ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKFYKQKIH 176
GL ILAFPCNQFG QEP +I++F ++ +F +F K+ A LYKF K + H
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 177 S 177
Sbjct: 124 G 124
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
+ +S S+++F+VKD G DV L Y+G + LIVNVA + G T+ NY +L +++ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKFYKQKIH 176
GL ILAFPCNQFG QEP +I++F ++ +F +F K+ A LYKF K + H
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 177 S 177
Sbjct: 124 G 124
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S+H+FS KD G V+L Y+G + ++ NVASQ G T NYT+L L+ +Y GL ILA
Sbjct: 28 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILA 87
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKFYKQKIHSHG 179
FPCNQFG QEPG NE+I+EFA + +F +F K+ A L+K+ K + G
Sbjct: 88 FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKG 143
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
S + F VKDAKG+ V L YKGK+ L+VNVAS C LT+ NY L +L+ ++ +L
Sbjct: 16 NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 75
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLAL 165
AFPCNQFG EP +++++ FA + FPIF K+ L
Sbjct: 76 AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKIL 114
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
S + F VKDAKG+ V L YKGK+ L+VNVAS C LT+ NY L +L+ ++ +L
Sbjct: 25 NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 84
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLAL 165
AFPCNQFG EP +++++ FA + FPIF K+ L
Sbjct: 85 AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKIL 123
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 76 DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA 135
D KGQ KGK++LIVNVAS+CG T Y EL LY +YK++G I+ FPCNQFG
Sbjct: 19 DKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFPCNQFGH 77
Query: 136 QEPGDNEQIQEFACTRFKAEFPIFDKV 162
QEPG +E+I +F + FPI K+
Sbjct: 78 QEPGSDEEIAQFCQLNYGVTFPIMKKI 104
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
Q + +DF + +G+ V L Y+G + L+VNVAS+CG T+ +Y L QL
Sbjct: 24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 83
Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162
+LAFPCNQFG QEP N++I+ FA + FP+F K+
Sbjct: 84 NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKI 122
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 65 SKTSVHDF-SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
K +++D+ ++ K + V Y GK +L VNVA+ CGLT + Y EL+ L ++ K GL
Sbjct: 31 EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGL 89
Query: 124 EILAFPCNQFGAQEPGDNEQI 144
+L FPCNQFG QEPGDN++I
Sbjct: 90 VVLGFPCNQFGKQEPGDNKEI 110
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 64 QSKTSVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122
QS SV+ FS + A G+ V L +GK+LLI NVAS G T +YT++++L + +G
Sbjct: 21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 80
Query: 123 LEILAFPCNQFGAQEPGDNEQI 144
L +L FPCNQFG QE NE+I
Sbjct: 81 LVVLGFPCNQFGHQENAKNEEI 102
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 68 SVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+V+ FS + A G+ +LS +GK+LLI NVAS G T +YT+++ L + +GL +L
Sbjct: 11 TVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVVL 70
Query: 127 AFPCNQFGAQEPGDNEQI 144
FPCNQFG QE NE+I
Sbjct: 71 GFPCNQFGHQENAKNEEI 88
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S +D S + G+ VD + ++G+ +LI NVAS CG T ++T+L++L ++ + L +L
Sbjct: 27 SFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVLG 85
Query: 128 FPCNQFGAQEPGDNEQI 144
FPCNQFG QE NE+I
Sbjct: 86 FPCNQFGHQENCQNEEI 102
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 68 SVHDFSVKDAKGQD-VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+++++ G++ + Y GK +L VNVAS GLT Y EL+ L ++ GL IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 127 AFPCNQFGAQEPGDNEQI 144
FPCNQFG QEPG+N +I
Sbjct: 75 GFPCNQFGKQEPGENSEI 92
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125
+ S+ D +KD KG L+ KGK++LI ++ ++ L +LY+KY +QG EI
Sbjct: 12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S FS D G+ V L+ KGK + I A+ CG L +L +KY + + ++
Sbjct: 9 SAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVS 68
Query: 128 FPCNQ 132
C++
Sbjct: 69 LSCDK 73
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
TMAS + + D + +DA G+ LS ++GK LL+ A+ C L +L K
Sbjct: 32 TMAS-APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS 90
Query: 120 NQGLEILAFPCNQFGAQEP 138
E++A + ++P
Sbjct: 91 GPNFEVVAINIDTRDPEKP 109
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 5 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + + Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL 103
DF++ G+ V LS +GK++++ AS CG+
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV 47
>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|F Chain F, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|G Chain G, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|H Chain H, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
Length = 218
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 33 QTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYK-GKL 91
Q+++ ++SN I+L +R DF + DA G L+ +K
Sbjct: 21 QSMMPKTQSNSITLGTR-------------------AADFVLPDAGGNLFTLAEFKDSPA 61
Query: 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132
LL+ ++++C L++ Y QGL ++A N
Sbjct: 62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSND 102
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 76 DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132
D KG V L+ +KGK +L+ + C L + Y+ +K++G I ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
DF++ G V LS G ++ + AS CG ++ +Q KYK +G +++A
Sbjct: 11 DFALPGKTGV-VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVA 66
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ 136
+G D+ L + K L+ ++S CG T L +L+DK LE + P +
Sbjct: 297 VEGLDIQLEVLK----LLAEMSSFCGDMEKLETNLRKLFDKL----LEYMPLPPEEAENG 348
Query: 137 EPGDNEQ 143
E NE+
Sbjct: 349 ENAGNEE 355
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ 136
+G D+ L + K L+ ++S CG T L +L+DK LE + P +
Sbjct: 280 VEGLDIQLEVLK----LLAEMSSFCGDMEKLETNLRKLFDKL----LEYMPLPPEEAENG 331
Query: 137 EPGDNEQ 143
E NE+
Sbjct: 332 ENAGNEE 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,976,313
Number of Sequences: 62578
Number of extensions: 173665
Number of successful extensions: 607
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 48
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)