Query 029690
Match_columns 189
No_of_seqs 212 out of 1455
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 16:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10606 btuE putative glutath 99.9 1.8E-26 4E-31 177.3 11.6 110 67-177 3-117 (183)
2 PTZ00056 glutathione peroxidas 99.9 4.5E-26 9.7E-31 177.8 12.2 111 63-174 13-128 (199)
3 cd00340 GSH_Peroxidase Glutath 99.9 1.3E-24 2.8E-29 162.7 11.8 108 68-176 1-113 (152)
4 PLN02399 phospholipid hydroper 99.9 1.3E-24 2.8E-29 172.9 12.3 112 63-174 73-189 (236)
5 PLN02412 probable glutathione 99.9 3.3E-24 7.1E-29 163.0 12.9 110 65-174 5-119 (167)
6 PTZ00256 glutathione peroxidas 99.9 5E-24 1.1E-28 164.3 12.7 112 65-176 16-133 (183)
7 TIGR02540 gpx7 putative glutat 99.9 1.2E-23 2.6E-28 157.5 11.8 105 69-173 2-111 (153)
8 COG0386 BtuE Glutathione perox 99.9 1.2E-22 2.5E-27 148.6 9.6 110 67-177 3-117 (162)
9 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 6E-22 1.3E-26 142.4 11.4 97 65-171 1-98 (124)
10 PF00255 GSHPx: Glutathione pe 99.9 1.1E-21 2.3E-26 138.1 11.9 103 69-172 1-108 (108)
11 PF08534 Redoxin: Redoxin; In 99.9 9.3E-22 2E-26 145.7 9.3 99 64-172 1-102 (146)
12 cd03018 PRX_AhpE_like Peroxire 99.9 7.4E-21 1.6E-25 141.1 11.8 100 64-172 2-104 (149)
13 PRK00522 tpx lipid hydroperoxi 99.9 1E-20 2.2E-25 143.8 12.6 98 63-171 18-117 (167)
14 cd03014 PRX_Atyp2cys Peroxired 99.8 1.9E-20 4E-25 138.3 12.0 88 65-163 2-91 (143)
15 PRK09437 bcp thioredoxin-depen 99.8 1.3E-20 2.9E-25 140.9 9.8 91 64-163 5-96 (154)
16 COG1225 Bcp Peroxiredoxin [Pos 99.8 2.2E-20 4.8E-25 139.0 10.6 100 63-171 4-106 (157)
17 cd03017 PRX_BCP Peroxiredoxin 99.8 3E-20 6.6E-25 136.4 9.5 88 67-163 1-89 (140)
18 KOG1651 Glutathione peroxidase 99.8 3E-20 6.4E-25 137.5 9.3 113 65-177 10-127 (171)
19 cd02968 SCO SCO (an acronym fo 99.8 6.1E-20 1.3E-24 135.1 10.5 100 68-172 1-106 (142)
20 cd03015 PRX_Typ2cys Peroxiredo 99.8 1.2E-19 2.7E-24 138.4 11.9 97 65-171 1-109 (173)
21 TIGR03137 AhpC peroxiredoxin. 99.8 1.1E-19 2.3E-24 140.6 11.1 91 64-163 3-101 (187)
22 cd02969 PRX_like1 Peroxiredoxi 99.8 9E-20 1.9E-24 138.8 10.0 104 66-171 1-105 (171)
23 cd03012 TlpA_like_DipZ_like Tl 99.8 1.2E-19 2.7E-24 131.4 8.8 90 79-172 13-102 (126)
24 PRK03147 thiol-disulfide oxido 99.8 2.9E-19 6.3E-24 135.7 10.2 93 63-163 35-127 (173)
25 cd02970 PRX_like2 Peroxiredoxi 99.8 3.5E-19 7.6E-24 131.7 9.9 95 68-172 1-97 (149)
26 cd02971 PRX_family Peroxiredox 99.8 4.2E-19 9.1E-24 130.2 10.1 95 68-172 1-97 (140)
27 PRK15412 thiol:disulfide inter 99.8 4.3E-19 9.3E-24 137.0 8.4 88 64-163 40-131 (185)
28 PRK13190 putative peroxiredoxi 99.8 1.4E-18 3E-23 135.9 11.3 91 64-163 3-99 (202)
29 cd02967 mauD Methylamine utili 99.8 1.4E-18 3E-23 123.3 10.0 84 70-163 1-86 (114)
30 cd03010 TlpA_like_DsbE TlpA-li 99.8 1.9E-18 4.1E-23 125.1 9.2 85 68-163 2-89 (127)
31 cd03008 TryX_like_RdCVF Trypar 99.8 2.2E-18 4.9E-23 127.8 9.2 72 80-159 16-94 (146)
32 PRK10382 alkyl hydroperoxide r 99.8 5.3E-18 1.1E-22 131.0 11.6 92 64-163 3-101 (187)
33 PRK13599 putative peroxiredoxi 99.8 2.3E-18 4.9E-23 135.8 9.7 92 64-163 3-100 (215)
34 cd03016 PRX_1cys Peroxiredoxin 99.8 4.2E-18 9E-23 133.3 10.9 89 65-163 1-97 (203)
35 TIGR02661 MauD methylamine deh 99.8 3.9E-18 8.5E-23 132.1 10.1 85 64-160 47-133 (189)
36 PRK14018 trifunctional thiored 99.8 9.5E-18 2.1E-22 146.4 12.3 104 63-172 32-136 (521)
37 PRK13191 putative peroxiredoxi 99.8 5.7E-18 1.2E-22 133.6 9.7 92 64-163 8-105 (215)
38 PRK15000 peroxidase; Provision 99.7 2.6E-17 5.6E-22 128.5 11.6 91 65-163 4-107 (200)
39 TIGR00385 dsbE periplasmic pro 99.7 9.3E-18 2E-22 128.1 7.9 89 63-163 34-126 (173)
40 PLN02919 haloacid dehalogenase 99.7 1.6E-17 3.5E-22 156.3 10.7 98 63-163 391-491 (1057)
41 PTZ00137 2-Cys peroxiredoxin; 99.7 4.1E-17 8.8E-22 131.6 11.5 93 63-163 68-171 (261)
42 PTZ00253 tryparedoxin peroxida 99.7 4.7E-17 1E-21 127.0 10.9 92 64-163 7-109 (199)
43 PRK13189 peroxiredoxin; Provis 99.7 1E-16 2.2E-21 127.1 10.1 91 64-163 10-107 (222)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 7.8E-17 1.7E-21 115.7 8.1 82 70-163 1-82 (123)
45 cd02966 TlpA_like_family TlpA- 99.7 2.3E-16 4.9E-21 110.3 9.6 86 71-163 1-86 (116)
46 cd03013 PRX5_like Peroxiredoxi 99.7 1.8E-16 4E-21 119.0 9.2 90 65-163 1-99 (155)
47 cd02964 TryX_like_family Trypa 99.7 1.1E-16 2.4E-21 116.9 7.6 74 77-159 4-80 (132)
48 cd03009 TryX_like_TryX_NRX Try 99.7 2.7E-16 5.8E-21 114.5 7.3 72 74-153 3-76 (131)
49 PF13905 Thioredoxin_8: Thiore 99.6 5.8E-15 1.3E-19 101.4 8.9 75 89-171 1-78 (95)
50 TIGR01626 ytfJ_HI0045 conserve 99.6 2.5E-15 5.3E-20 115.4 7.6 93 63-163 23-134 (184)
51 PF02630 SCO1-SenC: SCO1/SenC; 99.6 1.6E-14 3.4E-19 110.5 11.2 93 65-162 28-123 (174)
52 PRK13728 conjugal transfer pro 99.6 9E-15 2E-19 111.8 7.6 59 65-132 51-109 (181)
53 COG0450 AhpC Peroxiredoxin [Po 99.5 2.7E-13 5.9E-18 103.5 10.4 114 64-188 4-130 (194)
54 COG1999 Uncharacterized protei 99.4 4.7E-12 1E-16 99.4 12.0 86 71-161 49-139 (207)
55 cd02985 TRX_CDSP32 TRX family, 99.4 1E-12 2.2E-17 91.9 7.1 61 86-157 12-73 (103)
56 KOG0855 Alkyl hydroperoxide re 99.4 2.6E-12 5.6E-17 95.5 8.0 108 62-179 62-172 (211)
57 cd02950 TxlA TRX-like protein 99.3 3.2E-12 7E-17 94.6 4.1 57 74-131 3-61 (142)
58 TIGR02738 TrbB type-F conjugat 99.3 6.6E-12 1.4E-16 94.0 5.5 47 79-132 44-90 (153)
59 cd02948 TRX_NDPK TRX domain, T 99.2 1.9E-11 4.1E-16 85.3 6.6 67 88-163 16-82 (102)
60 KOG2501 Thioredoxin, nucleored 99.2 4.4E-11 9.6E-16 88.7 7.1 80 72-159 15-97 (157)
61 cd02999 PDI_a_ERp44_like PDIa 99.2 3.8E-11 8.2E-16 83.7 5.9 45 85-131 14-58 (100)
62 cd02954 DIM1 Dim1 family; Dim1 99.2 6.2E-11 1.3E-15 84.3 6.8 44 88-132 13-56 (114)
63 cd02986 DLP Dim1 family, Dim1- 99.1 2.1E-10 4.6E-15 81.2 6.7 43 88-131 13-55 (114)
64 KOG0910 Thioredoxin-like prote 99.1 1.4E-10 3E-15 85.4 5.2 44 88-132 60-103 (150)
65 cd02963 TRX_DnaJ TRX domain, D 99.1 3.4E-10 7.3E-15 80.2 6.6 46 86-131 21-66 (111)
66 KOG0907 Thioredoxin [Posttrans 99.1 3.7E-10 8E-15 79.5 5.9 61 89-163 21-85 (106)
67 cd03003 PDI_a_ERdj5_N PDIa fam 99.1 2.8E-10 6.1E-15 79.0 5.2 53 78-131 7-59 (101)
68 PHA02278 thioredoxin-like prot 99.0 5.6E-10 1.2E-14 78.2 6.1 44 88-132 13-56 (103)
69 cd02956 ybbN ybbN protein fami 99.0 9.6E-10 2.1E-14 75.4 6.6 43 88-131 11-53 (96)
70 KOG2792 Putative cytochrome C 99.0 2.1E-09 4.6E-14 85.2 9.1 85 70-159 120-208 (280)
71 cd03006 PDI_a_EFP1_N PDIa fami 99.0 1E-09 2.2E-14 78.2 6.5 43 88-131 28-70 (113)
72 cd02993 PDI_a_APS_reductase PD 99.0 9.2E-10 2E-14 77.6 6.3 44 88-131 20-63 (109)
73 cd02953 DsbDgamma DsbD gamma f 99.0 1.5E-09 3.2E-14 75.7 7.2 62 88-158 10-75 (104)
74 COG3118 Thioredoxin domain-con 99.0 1.7E-10 3.7E-15 93.4 2.6 45 87-132 41-85 (304)
75 cd02962 TMX2 TMX2 family; comp 99.0 1.4E-09 2.9E-14 81.4 6.9 45 88-132 46-90 (152)
76 cd03002 PDI_a_MPD1_like PDI fa 99.0 1.2E-09 2.7E-14 76.4 5.9 43 88-131 17-59 (109)
77 KOG0854 Alkyl hydroperoxide re 99.0 9.4E-10 2E-14 82.6 5.5 106 64-172 7-118 (224)
78 PLN00410 U5 snRNP protein, DIM 99.0 1.7E-09 3.6E-14 79.8 6.7 43 88-131 22-64 (142)
79 TIGR02740 TraF-like TraF-like 99.0 4.4E-10 9.6E-15 91.6 3.4 52 78-132 155-206 (271)
80 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 3.7E-09 7.9E-14 73.6 7.2 43 88-131 18-60 (104)
81 cd02994 PDI_a_TMX PDIa family, 98.9 1.9E-09 4.1E-14 74.7 5.5 43 88-131 16-58 (101)
82 PRK09381 trxA thioredoxin; Pro 98.9 4E-09 8.6E-14 74.1 6.3 44 88-132 20-63 (109)
83 cd03000 PDI_a_TMX3 PDIa family 98.9 4.2E-09 9.1E-14 73.5 5.7 44 88-131 14-59 (104)
84 COG2077 Tpx Peroxiredoxin [Pos 98.8 4.3E-08 9.3E-13 72.0 10.2 90 63-163 18-109 (158)
85 PRK10996 thioredoxin 2; Provis 98.8 6.7E-09 1.4E-13 76.5 5.9 43 88-131 51-93 (139)
86 cd02952 TRP14_like Human TRX-r 98.8 7E-09 1.5E-13 74.4 5.7 44 88-132 20-70 (119)
87 cd02959 ERp19 Endoplasmic reti 98.8 7.1E-09 1.5E-13 74.3 5.4 46 85-131 15-60 (117)
88 cd02997 PDI_a_PDIR PDIa family 98.8 3.5E-09 7.6E-14 73.3 3.5 62 88-159 16-79 (104)
89 TIGR01295 PedC_BrcD bacterioci 98.8 2.8E-08 6.1E-13 71.7 7.7 64 88-155 22-85 (122)
90 cd03005 PDI_a_ERp46 PDIa famil 98.8 6.6E-09 1.4E-13 71.7 4.2 41 91-131 18-60 (102)
91 cd02951 SoxW SoxW family; SoxW 98.8 1.3E-08 2.8E-13 73.3 5.9 44 88-132 12-59 (125)
92 cd02992 PDI_a_QSOX PDIa family 98.8 2.2E-08 4.7E-13 71.3 6.9 43 89-131 19-63 (114)
93 cd02957 Phd_like Phosducin (Ph 98.8 2.8E-08 6E-13 70.5 7.0 41 89-131 24-64 (113)
94 cd02996 PDI_a_ERp44 PDIa famil 98.8 1.3E-08 2.8E-13 71.5 4.8 44 88-131 17-65 (108)
95 cd02949 TRX_NTR TRX domain, no 98.7 4E-08 8.7E-13 67.7 6.8 43 88-131 12-54 (97)
96 cd02989 Phd_like_TxnDC9 Phosdu 98.7 5.5E-08 1.2E-12 69.2 7.5 42 88-131 21-62 (113)
97 PF00085 Thioredoxin: Thioredo 98.7 6.9E-08 1.5E-12 66.3 7.9 43 88-131 16-58 (103)
98 cd02984 TRX_PICOT TRX domain, 98.7 4.1E-08 8.9E-13 67.2 6.4 42 89-131 14-55 (97)
99 TIGR00424 APS_reduc 5'-adenyly 98.7 3E-08 6.4E-13 86.2 6.6 44 88-131 370-413 (463)
100 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 2.8E-08 6E-13 68.6 4.9 44 88-131 17-61 (104)
101 PTZ00051 thioredoxin; Provisio 98.7 4.5E-08 9.8E-13 67.2 5.9 42 88-131 17-58 (98)
102 cd02998 PDI_a_ERp38 PDIa famil 98.7 3.8E-08 8.2E-13 68.0 5.4 43 89-131 18-61 (105)
103 TIGR01126 pdi_dom protein disu 98.6 3.2E-08 6.9E-13 68.0 4.2 44 88-131 12-56 (102)
104 TIGR01068 thioredoxin thioredo 98.6 1.6E-07 3.4E-12 64.2 7.5 42 89-131 14-55 (101)
105 cd03001 PDI_a_P5 PDIa family, 98.6 1.6E-07 3.4E-12 64.8 6.7 42 89-131 18-59 (103)
106 cd02965 HyaE HyaE family; HyaE 98.6 1.7E-07 3.8E-12 66.2 6.2 44 88-132 26-71 (111)
107 PTZ00443 Thioredoxin domain-co 98.6 1.3E-07 2.9E-12 75.0 5.9 42 89-131 52-93 (224)
108 cd02987 Phd_like_Phd Phosducin 98.6 1.5E-07 3.3E-12 72.0 6.0 41 89-131 83-123 (175)
109 PLN02309 5'-adenylylsulfate re 98.6 1.6E-07 3.4E-12 81.6 6.7 44 88-131 364-407 (457)
110 KOG0852 Alkyl hydroperoxide re 98.5 8.9E-07 1.9E-11 66.7 9.5 113 65-188 6-130 (196)
111 cd02975 PfPDO_like_N Pyrococcu 98.5 4E-07 8.6E-12 64.7 6.6 41 89-131 22-62 (113)
112 COG0526 TrxA Thiol-disulfide i 98.5 6.9E-07 1.5E-11 61.3 6.9 49 82-131 25-73 (127)
113 TIGR00411 redox_disulf_1 small 98.5 6.3E-07 1.4E-11 59.3 6.4 39 92-131 2-40 (82)
114 KOG0908 Thioredoxin-like prote 98.4 2.6E-07 5.6E-12 73.3 4.3 58 84-155 16-73 (288)
115 cd02961 PDI_a_family Protein D 98.4 6.3E-07 1.4E-11 60.7 5.8 44 88-131 14-58 (101)
116 PTZ00102 disulphide isomerase; 98.4 5.1E-07 1.1E-11 78.8 6.6 58 74-131 359-418 (477)
117 cd02982 PDI_b'_family Protein 98.4 1.1E-06 2.4E-11 60.7 6.9 42 89-131 12-53 (103)
118 cd03065 PDI_b_Calsequestrin_N 98.4 7.6E-07 1.6E-11 64.0 6.0 43 89-132 27-75 (120)
119 cd02988 Phd_like_VIAF Phosduci 98.4 6.5E-07 1.4E-11 69.5 5.7 41 89-131 102-142 (192)
120 PRK00293 dipZ thiol:disulfide 98.3 1.2E-06 2.5E-11 78.6 7.1 60 85-154 470-532 (571)
121 cd02947 TRX_family TRX family; 98.3 2.3E-06 5.1E-11 56.7 6.4 41 89-131 10-50 (93)
122 TIGR00412 redox_disulf_2 small 98.2 3.5E-06 7.6E-11 55.5 5.5 36 93-129 2-37 (76)
123 PF13098 Thioredoxin_2: Thiore 98.2 1.2E-06 2.6E-11 61.4 3.1 43 88-131 4-49 (112)
124 TIGR01130 ER_PDI_fam protein d 98.2 1.6E-06 3.5E-11 75.0 4.0 44 88-131 17-62 (462)
125 PTZ00062 glutaredoxin; Provisi 98.2 3E-06 6.6E-11 66.3 5.1 40 90-131 18-57 (204)
126 cd02955 SSP411 TRX domain, SSP 98.2 1E-05 2.2E-10 58.5 7.4 44 87-131 13-59 (124)
127 TIGR01130 ER_PDI_fam protein d 98.1 7.1E-06 1.5E-10 71.0 5.9 44 88-131 363-408 (462)
128 PF00837 T4_deiodinase: Iodoth 98.0 1.6E-05 3.4E-10 63.1 7.0 100 62-163 72-190 (237)
129 PF13899 Thioredoxin_7: Thiore 98.0 2.7E-05 5.9E-10 51.8 7.1 43 88-131 16-61 (82)
130 cd02973 TRX_GRX_like Thioredox 98.0 2E-05 4.4E-10 50.1 6.1 38 92-131 2-39 (67)
131 PTZ00102 disulphide isomerase; 98.0 6.3E-06 1.4E-10 71.9 4.5 44 88-131 48-93 (477)
132 cd01659 TRX_superfamily Thiore 98.0 2.7E-05 5.8E-10 47.2 5.8 38 93-132 1-38 (69)
133 PHA02125 thioredoxin-like prot 97.9 3.1E-05 6.7E-10 50.8 4.9 51 93-162 2-53 (75)
134 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 4.2E-05 9.2E-10 52.0 5.7 45 85-131 8-52 (89)
135 TIGR02187 GlrX_arch Glutaredox 97.8 5E-05 1.1E-09 59.8 6.6 42 88-131 132-173 (215)
136 TIGR02180 GRX_euk Glutaredoxin 97.8 8.6E-05 1.9E-09 49.1 6.7 57 93-159 1-58 (84)
137 TIGR02187 GlrX_arch Glutaredox 97.8 3.6E-05 7.8E-10 60.6 5.5 43 87-131 17-62 (215)
138 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00011 2.4E-09 46.9 6.5 56 93-163 2-58 (74)
139 KOG0190 Protein disulfide isom 97.7 4.8E-05 1E-09 66.4 4.6 59 89-159 42-103 (493)
140 PF04592 SelP_N: Selenoprotein 97.7 0.00023 4.9E-09 56.3 7.8 99 66-174 7-109 (238)
141 COG0678 AHP1 Peroxiredoxin [Po 97.6 0.00021 4.5E-09 52.8 6.1 92 63-163 3-107 (165)
142 KOG0191 Thioredoxin/protein di 97.6 0.00016 3.6E-09 61.7 6.5 63 88-163 46-109 (383)
143 KOG0190 Protein disulfide isom 97.5 0.00011 2.4E-09 64.2 4.4 41 88-128 383-424 (493)
144 PF13728 TraF: F plasmid trans 97.5 0.00022 4.8E-09 56.3 5.8 48 82-132 113-160 (215)
145 TIGR02200 GlrX_actino Glutared 97.4 0.00062 1.3E-08 44.0 6.2 32 93-131 2-33 (77)
146 cd02960 AGR Anterior Gradient 97.4 0.00037 8.1E-09 50.7 5.1 44 87-131 21-67 (130)
147 PF05988 DUF899: Bacterial pro 97.3 0.0016 3.5E-08 50.9 8.3 85 69-163 46-138 (211)
148 PF14595 Thioredoxin_9: Thiore 97.2 0.00012 2.6E-09 53.2 1.2 65 85-159 37-101 (129)
149 cd02958 UAS UAS family; UAS is 97.2 0.0016 3.6E-08 45.8 6.9 44 87-131 15-61 (114)
150 TIGR02739 TraF type-F conjugat 97.2 0.0007 1.5E-08 54.8 5.3 49 82-133 143-191 (256)
151 smart00594 UAS UAS domain. 97.0 0.0035 7.6E-08 44.9 7.2 62 87-159 25-90 (122)
152 PRK13703 conjugal pilus assemb 97.0 0.00079 1.7E-08 54.2 3.9 49 82-133 136-184 (248)
153 cd03007 PDI_a_ERp29_N PDIa fam 97.0 0.0016 3.4E-08 46.5 4.8 63 88-159 17-84 (116)
154 PRK11200 grxA glutaredoxin 1; 97.0 0.0032 6.8E-08 42.0 6.0 64 93-163 3-67 (85)
155 cd02976 NrdH NrdH-redoxin (Nrd 96.8 0.0068 1.5E-07 38.3 6.4 56 93-163 2-58 (73)
156 PF06110 DUF953: Eukaryotic pr 96.8 0.0039 8.4E-08 44.7 5.4 43 88-131 18-67 (119)
157 KOG1731 FAD-dependent sulfhydr 96.7 0.00037 8E-09 61.4 -0.3 60 90-159 58-120 (606)
158 KOG0541 Alkyl hydroperoxide re 96.7 0.0052 1.1E-07 45.7 5.6 91 64-163 10-113 (171)
159 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.013 2.9E-07 38.3 6.6 57 93-161 2-59 (82)
160 cd03023 DsbA_Com1_like DsbA fa 96.5 0.0048 1E-07 45.0 4.8 41 88-130 4-44 (154)
161 PF13911 AhpC-TSA_2: AhpC/TSA 96.5 0.0064 1.4E-07 42.8 5.2 52 111-172 2-53 (115)
162 KOG3425 Uncharacterized conser 96.4 0.0084 1.8E-07 42.7 5.3 43 88-131 24-74 (128)
163 PF00462 Glutaredoxin: Glutare 96.3 0.013 2.7E-07 36.3 5.2 53 93-160 1-54 (60)
164 KOG0912 Thiol-disulfide isomer 96.3 0.0071 1.5E-07 49.8 5.0 43 89-131 13-59 (375)
165 PF13462 Thioredoxin_4: Thiore 96.3 0.014 3.1E-07 43.1 6.4 51 80-131 3-55 (162)
166 cd02066 GRX_family Glutaredoxi 96.3 0.013 2.9E-07 36.6 5.2 55 93-162 2-57 (72)
167 TIGR02183 GRXA Glutaredoxin, G 96.2 0.028 6.2E-07 37.6 6.9 71 93-173 2-80 (86)
168 COG4232 Thiol:disulfide interc 96.2 0.0057 1.2E-07 54.4 4.0 68 88-163 473-544 (569)
169 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.04 8.6E-07 35.3 6.6 54 93-161 2-57 (75)
170 KOG4277 Uncharacterized conser 95.9 0.0027 5.9E-08 52.2 0.8 36 90-125 44-79 (468)
171 TIGR02181 GRX_bact Glutaredoxi 95.9 0.05 1.1E-06 35.4 6.8 53 93-160 1-54 (79)
172 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.052 1.1E-06 35.6 6.6 57 90-162 7-64 (79)
173 PRK10329 glutaredoxin-like pro 95.6 0.056 1.2E-06 35.9 6.0 56 93-163 3-58 (81)
174 cd03019 DsbA_DsbA DsbA family, 95.4 0.034 7.3E-07 41.7 4.9 43 88-131 14-56 (178)
175 KOG0191 Thioredoxin/protein di 95.3 0.036 7.8E-07 47.4 5.4 43 89-131 162-205 (383)
176 PHA03050 glutaredoxin; Provisi 95.2 0.039 8.5E-07 38.8 4.5 22 93-114 15-36 (108)
177 TIGR02194 GlrX_NrdH Glutaredox 95.0 0.081 1.8E-06 33.9 5.2 52 94-161 2-54 (72)
178 COG4312 Uncharacterized protei 94.9 0.15 3.2E-06 40.2 7.2 83 71-163 54-144 (247)
179 COG0695 GrxC Glutaredoxin and 94.8 0.14 2.9E-06 33.9 6.0 57 93-163 3-61 (80)
180 cd03027 GRX_DEP Glutaredoxin ( 94.7 0.21 4.6E-06 31.9 6.7 32 93-131 3-34 (73)
181 cd03029 GRX_hybridPRX5 Glutare 94.4 0.25 5.5E-06 31.4 6.4 32 93-131 3-34 (72)
182 TIGR00365 monothiol glutaredox 94.3 0.16 3.4E-06 34.9 5.6 58 89-161 11-73 (97)
183 TIGR02189 GlrX-like_plant Glut 94.2 0.15 3.3E-06 35.1 5.4 55 93-159 10-65 (99)
184 cd03020 DsbA_DsbC_DsbG DsbA fa 94.2 0.28 6E-06 37.9 7.4 32 82-113 70-101 (197)
185 cd03028 GRX_PICOT_like Glutare 93.9 0.33 7.2E-06 32.6 6.5 47 99-160 21-68 (90)
186 KOG0911 Glutaredoxin-related p 93.9 0.053 1.1E-06 42.8 2.8 43 88-132 16-58 (227)
187 KOG0914 Thioredoxin-like prote 93.7 0.035 7.7E-07 43.7 1.6 55 78-132 131-187 (265)
188 PRK10638 glutaredoxin 3; Provi 93.3 0.37 7.9E-06 31.7 5.8 53 93-160 4-57 (83)
189 PRK10877 protein disulfide iso 93.2 0.2 4.3E-06 40.0 5.2 39 88-130 106-144 (232)
190 cd02972 DsbA_family DsbA famil 92.9 0.16 3.5E-06 33.4 3.7 38 93-131 1-38 (98)
191 PRK10954 periplasmic protein d 92.5 0.17 3.8E-06 39.4 3.9 43 88-131 36-81 (207)
192 KOG4498 Uncharacterized conser 92.4 0.3 6.5E-06 37.6 4.9 80 75-163 35-116 (197)
193 PF03190 Thioredox_DsbH: Prote 92.1 0.17 3.8E-06 38.2 3.3 28 82-109 30-57 (163)
194 PRK10824 glutaredoxin-4; Provi 91.6 0.53 1.1E-05 33.5 5.1 60 89-163 14-79 (115)
195 cd03035 ArsC_Yffb Arsenate Red 91.2 0.57 1.2E-05 32.6 5.0 48 94-153 2-49 (105)
196 KOG1752 Glutaredoxin and relat 91.2 1.1 2.3E-05 31.3 6.2 54 93-158 16-70 (104)
197 cd03036 ArsC_like Arsenate Red 90.8 0.63 1.4E-05 32.6 4.9 49 95-155 3-51 (111)
198 cd02991 UAS_ETEA UAS family, E 90.8 1.1 2.4E-05 31.7 6.2 41 87-131 15-61 (116)
199 cd03032 ArsC_Spx Arsenate Redu 90.7 0.75 1.6E-05 32.4 5.3 65 94-171 3-67 (115)
200 TIGR01617 arsC_related transcr 90.6 0.65 1.4E-05 32.8 4.9 50 95-156 3-52 (117)
201 cd02977 ArsC_family Arsenate R 90.6 0.71 1.5E-05 31.8 5.0 49 94-154 2-50 (105)
202 PF13192 Thioredoxin_3: Thiore 90.4 0.6 1.3E-05 30.2 4.2 23 97-119 6-28 (76)
203 KOG3414 Component of the U4/U6 90.0 1.1 2.5E-05 32.3 5.6 57 88-157 22-78 (142)
204 PRK01655 spxA transcriptional 89.9 0.77 1.7E-05 33.3 4.8 52 93-156 2-53 (131)
205 PF05768 DUF836: Glutaredoxin- 89.6 0.6 1.3E-05 30.7 3.8 56 93-163 2-57 (81)
206 PRK11657 dsbG disulfide isomer 89.6 0.57 1.2E-05 37.8 4.3 40 88-130 116-155 (251)
207 COG1651 DsbG Protein-disulfide 89.2 1.6 3.5E-05 34.6 6.7 57 74-130 69-125 (244)
208 PF02114 Phosducin: Phosducin; 88.9 1.3 2.7E-05 36.2 5.9 41 89-131 146-186 (265)
209 PRK12559 transcriptional regul 88.1 1.6 3.6E-05 31.6 5.5 51 93-155 2-52 (131)
210 PTZ00062 glutaredoxin; Provisi 88.1 1.5 3.2E-05 34.4 5.6 60 89-163 112-177 (204)
211 PF11009 DUF2847: Protein of u 86.7 2.8 6.1E-05 29.3 5.7 59 88-155 18-76 (105)
212 PRK13344 spxA transcriptional 83.8 3.8 8.3E-05 29.7 5.6 50 95-156 4-53 (132)
213 TIGR03759 conj_TIGR03759 integ 83.4 4 8.7E-05 31.8 5.8 60 91-163 110-169 (200)
214 TIGR03143 AhpF_homolog putativ 83.1 3.6 7.8E-05 37.0 6.3 41 89-131 476-516 (555)
215 PF09695 YtfJ_HI0045: Bacteria 83.0 6.8 0.00015 29.5 6.6 95 65-163 3-112 (160)
216 PF02966 DIM1: Mitosis protein 81.4 6.1 0.00013 28.8 5.7 43 88-131 19-61 (133)
217 KOG2961 Predicted hydrolase (H 80.6 20 0.00042 27.1 8.2 99 68-171 21-130 (190)
218 PRK15317 alkyl hydroperoxide r 79.6 5.1 0.00011 35.6 6.0 66 63-130 80-155 (517)
219 PRK12759 bifunctional gluaredo 79.6 4.6 0.0001 35.0 5.5 32 93-131 4-35 (410)
220 PF05176 ATP-synt_10: ATP10 pr 77.9 4.8 0.0001 32.6 4.8 66 65-131 97-166 (252)
221 KOG0913 Thiol-disulfide isomer 77.0 0.63 1.4E-05 37.1 -0.5 41 85-125 35-75 (248)
222 PHA03075 glutaredoxin-like pro 75.4 2.9 6.2E-05 29.7 2.5 69 90-159 2-73 (123)
223 COG2179 Predicted hydrolase of 73.3 9 0.00019 29.2 4.8 43 106-157 46-88 (175)
224 PF05673 DUF815: Protein of un 72.5 16 0.00034 29.6 6.4 78 98-186 60-141 (249)
225 PF01323 DSBA: DSBA-like thior 72.2 7.8 0.00017 29.1 4.5 40 92-131 1-40 (193)
226 TIGR03140 AhpF alkyl hydropero 71.6 11 0.00024 33.5 5.9 40 88-129 116-155 (515)
227 COG4545 Glutaredoxin-related p 70.1 8.4 0.00018 25.3 3.5 42 94-149 5-46 (85)
228 PF06053 DUF929: Domain of unk 69.8 9.5 0.00021 30.9 4.6 33 88-120 57-89 (249)
229 cd03033 ArsC_15kD Arsenate Red 69.7 15 0.00032 25.8 5.1 49 94-154 3-51 (113)
230 TIGR00014 arsC arsenate reduct 68.9 16 0.00035 25.5 5.2 49 95-155 3-51 (114)
231 cd03041 GST_N_2GST_N GST_N fam 66.8 30 0.00065 21.9 7.2 64 95-173 4-75 (77)
232 COG1393 ArsC Arsenate reductas 66.4 19 0.00041 25.6 5.1 50 93-156 3-54 (117)
233 PRK10853 putative reductase; P 64.9 16 0.00035 25.9 4.6 49 95-155 4-52 (118)
234 TIGR01616 nitro_assoc nitrogen 61.5 25 0.00055 25.2 5.1 49 93-153 3-51 (126)
235 cd03034 ArsC_ArsC Arsenate Red 61.2 26 0.00056 24.4 5.1 49 95-155 3-51 (112)
236 PF02670 DXP_reductoisom: 1-de 61.0 31 0.00066 25.0 5.4 42 113-163 16-57 (129)
237 PRK10026 arsenate reductase; P 60.9 31 0.00068 25.3 5.6 50 93-154 4-53 (141)
238 PF13743 Thioredoxin_5: Thiore 59.9 14 0.00031 28.0 3.8 35 95-130 2-36 (176)
239 cd03060 GST_N_Omega_like GST_N 59.7 16 0.00035 22.7 3.5 52 95-162 3-55 (71)
240 cd03025 DsbA_FrnE_like DsbA fa 58.4 13 0.00027 28.0 3.3 39 93-131 3-42 (193)
241 COG2143 Thioredoxin-related pr 58.2 31 0.00067 26.1 5.1 43 87-130 40-85 (182)
242 PF03960 ArsC: ArsC family; I 57.6 35 0.00077 23.4 5.2 63 97-172 2-64 (110)
243 cd03031 GRX_GRX_like Glutaredo 57.4 37 0.00081 25.1 5.5 25 100-131 15-39 (147)
244 PF13848 Thioredoxin_6: Thiore 55.6 44 0.00096 24.5 5.9 43 88-131 93-136 (184)
245 TIGR00995 3a0901s06TIC22 chlor 55.0 89 0.0019 25.6 7.7 79 67-163 80-161 (270)
246 cd03024 DsbA_FrnE DsbA family, 54.6 66 0.0014 24.2 6.8 36 96-131 4-42 (201)
247 COG1331 Highly conserved prote 54.5 16 0.00035 33.7 3.7 40 87-132 41-86 (667)
248 PF06764 DUF1223: Protein of u 54.4 61 0.0013 25.3 6.5 55 96-154 5-66 (202)
249 cd03059 GST_N_SspA GST_N famil 54.1 45 0.00098 20.4 4.9 63 95-172 3-70 (73)
250 PRK11509 hydrogenase-1 operon 53.4 72 0.0016 23.2 6.4 42 91-132 36-79 (132)
251 PF13417 GST_N_3: Glutathione 50.9 59 0.0013 20.3 5.1 66 96-176 2-72 (75)
252 PF10790 DUF2604: Protein of U 49.6 16 0.00034 23.2 2.1 25 63-87 30-54 (76)
253 PF10281 Ish1: Putative stress 49.3 22 0.00047 19.7 2.5 22 138-160 3-24 (38)
254 cd03051 GST_N_GTT2_like GST_N 46.4 59 0.0013 19.7 4.6 20 95-114 3-22 (74)
255 PRK12702 mannosyl-3-phosphogly 45.9 87 0.0019 26.1 6.4 64 72-163 3-66 (302)
256 PF04908 SH3BGR: SH3-binding, 45.8 97 0.0021 21.3 7.6 49 95-152 5-53 (99)
257 COG3019 Predicted metal-bindin 45.2 67 0.0015 23.7 5.0 46 92-156 27-72 (149)
258 cd02983 P5_C P5 family, C-term 44.8 65 0.0014 23.0 5.0 42 90-131 21-66 (130)
259 TIGR03143 AhpF_homolog putativ 44.1 65 0.0014 29.0 6.0 44 85-130 362-405 (555)
260 cd00570 GST_N_family Glutathio 43.9 65 0.0014 18.7 5.5 30 96-130 4-33 (71)
261 PF09419 PGP_phosphatase: Mito 43.7 85 0.0018 23.8 5.7 101 66-172 15-128 (168)
262 PF04134 DUF393: Protein of un 42.1 39 0.00085 23.1 3.5 31 96-129 2-32 (114)
263 TIGR01485 SPP_plant-cyano sucr 41.7 91 0.002 24.6 5.9 44 105-157 20-63 (249)
264 PF04278 Tic22: Tic22-like fam 41.3 57 0.0012 26.8 4.7 83 67-163 73-161 (274)
265 cd03073 PDI_b'_ERp72_ERp57 PDI 40.0 1.3E+02 0.0027 20.9 6.4 27 104-131 33-60 (111)
266 cd03037 GST_N_GRX2 GST_N famil 38.9 92 0.002 19.0 5.5 29 96-131 4-32 (71)
267 cd03072 PDI_b'_ERp44 PDIb' fam 38.8 1E+02 0.0022 21.3 5.1 27 104-131 29-58 (111)
268 PF07976 Phe_hydrox_dim: Pheno 38.8 1.7E+02 0.0036 22.0 7.0 70 62-131 29-116 (169)
269 PF07801 DUF1647: Protein of u 38.1 85 0.0018 23.2 4.7 71 69-148 37-108 (142)
270 TIGR01856 hisJ_fam histidinol 37.7 1.2E+02 0.0025 24.3 6.0 50 104-159 58-108 (253)
271 PF01106 NifU: NifU-like domai 37.7 1.1E+02 0.0023 19.4 4.6 33 78-111 15-47 (68)
272 cd01427 HAD_like Haloacid deha 37.6 92 0.002 20.8 4.9 40 106-154 24-63 (139)
273 cd03045 GST_N_Delta_Epsilon GS 36.6 1E+02 0.0022 18.8 5.6 31 95-130 3-33 (74)
274 PF13778 DUF4174: Domain of un 35.4 1.6E+02 0.0034 20.7 5.9 48 84-131 3-52 (118)
275 PF06953 ArsD: Arsenical resis 35.4 1.7E+02 0.0036 21.0 6.1 67 101-172 18-95 (123)
276 PF10589 NADH_4Fe-4S: NADH-ubi 35.2 7.6 0.00017 22.7 -0.9 22 99-120 17-38 (46)
277 PF09499 RE_ApaLI: ApaLI-like 34.5 1.3E+02 0.0029 23.1 5.4 103 6-120 58-174 (191)
278 PF09494 Slx4: Slx4 endonuclea 34.4 67 0.0014 20.0 3.3 16 140-156 46-61 (64)
279 PF12017 Tnp_P_element: Transp 34.1 1.7E+02 0.0037 23.5 6.3 38 109-155 196-233 (236)
280 COG0561 Cof Predicted hydrolas 34.0 1.2E+02 0.0026 24.0 5.5 45 107-160 21-65 (264)
281 PLN03098 LPA1 LOW PSII ACCUMUL 32.9 1.1E+02 0.0023 27.1 5.3 67 65-132 272-338 (453)
282 COG1535 EntB Isochorismate hyd 32.6 73 0.0016 24.7 3.7 54 93-148 42-95 (218)
283 PF14062 DUF4253: Domain of un 32.4 1.6E+02 0.0034 20.6 5.2 52 100-154 25-79 (111)
284 cd03061 GST_N_CLIC GST_N famil 31.3 1.5E+02 0.0032 19.9 4.8 64 99-178 20-89 (91)
285 PF04244 DPRP: Deoxyribodipyri 30.5 2.4E+02 0.0052 22.4 6.6 70 108-179 48-117 (224)
286 PF12687 DUF3801: Protein of u 30.4 79 0.0017 24.7 3.8 42 111-163 24-65 (204)
287 KOG3170 Conserved phosducin-li 30.3 95 0.0021 24.5 4.1 40 88-129 110-149 (240)
288 PF14307 Glyco_tran_WbsX: Glyc 29.8 1.2E+02 0.0025 25.6 5.0 44 88-131 157-200 (345)
289 PRK01158 phosphoglycolate phos 29.5 1.9E+02 0.0041 22.1 5.9 38 113-159 27-64 (230)
290 PF05116 S6PP: Sucrose-6F-phos 28.8 1.6E+02 0.0035 23.4 5.4 47 102-157 15-61 (247)
291 PRK06740 histidinol-phosphatas 28.6 2.1E+02 0.0046 24.0 6.3 49 106-159 123-172 (331)
292 KOG1422 Intracellular Cl- chan 28.3 2.2E+02 0.0047 22.6 5.7 37 100-148 20-56 (221)
293 cd02981 PDI_b_family Protein D 28.2 1.7E+02 0.0037 18.9 6.0 37 89-129 17-53 (97)
294 PF00875 DNA_photolyase: DNA p 27.5 1.1E+02 0.0024 22.4 4.0 44 107-159 51-94 (165)
295 PRK10696 tRNA 2-thiocytidine b 27.4 3.2E+02 0.007 21.8 7.7 65 89-159 29-93 (258)
296 PRK07328 histidinol-phosphatas 27.3 2.3E+02 0.005 22.8 6.2 50 104-160 62-112 (269)
297 PF13419 HAD_2: Haloacid dehal 26.8 2.3E+02 0.005 19.9 6.0 36 111-155 82-117 (176)
298 cd03030 GRX_SH3BGR Glutaredoxi 26.6 2E+02 0.0044 19.2 6.5 31 101-131 9-39 (92)
299 KOG1672 ATP binding protein [P 26.1 1.8E+02 0.004 22.8 5.0 41 88-130 83-123 (211)
300 PRK15126 thiamin pyrimidine py 26.1 2.3E+02 0.005 22.5 5.9 34 116-158 29-62 (272)
301 PF14871 GHL6: Hypothetical gl 25.8 1.2E+02 0.0027 21.8 3.9 56 65-122 72-127 (132)
302 PF12098 DUF3574: Protein of u 25.8 1.7E+02 0.0038 20.3 4.4 52 64-120 29-86 (104)
303 COG3769 Predicted hydrolase (H 25.4 2.7E+02 0.0058 22.5 5.8 65 68-161 5-70 (274)
304 PLN02640 glucose-6-phosphate 1 25.2 3.7E+02 0.0081 24.6 7.5 70 63-132 59-131 (573)
305 KOG1207 Diacetyl reductase/L-x 24.6 2.3E+02 0.005 22.1 5.2 60 116-184 25-85 (245)
306 PRK12359 flavodoxin FldB; Prov 24.6 2.4E+02 0.0052 21.3 5.4 23 125-148 139-161 (172)
307 KOG3363 Uncharacterized conser 24.2 2E+02 0.0043 21.9 4.7 72 99-173 88-160 (196)
308 PRK14502 bifunctional mannosyl 24.2 3.7E+02 0.0081 25.3 7.4 35 116-159 443-477 (694)
309 PF07700 HNOB: Heme NO binding 23.9 2.2E+02 0.0048 21.1 5.1 56 64-129 112-167 (171)
310 cd03040 GST_N_mPGES2 GST_N fam 23.6 85 0.0018 19.5 2.4 30 95-131 4-33 (77)
311 PF09547 Spore_IV_A: Stage IV 23.5 1.3E+02 0.0027 26.8 4.0 60 89-159 180-239 (492)
312 PF04723 GRDA: Glycine reducta 23.4 1.2E+02 0.0026 22.4 3.3 39 93-131 32-77 (150)
313 cd03022 DsbA_HCCA_Iso DsbA fam 23.4 1E+02 0.0022 22.8 3.3 35 96-131 4-38 (192)
314 COG2607 Predicted ATPase (AAA+ 23.2 1.8E+02 0.004 23.8 4.7 61 110-176 101-165 (287)
315 PF06279 DUF1033: Protein of u 23.2 69 0.0015 22.9 2.0 25 89-113 57-85 (120)
316 PF08821 CGGC: CGGC domain; I 23.0 1E+02 0.0022 21.5 2.9 76 78-159 24-103 (107)
317 PF10453 NUFIP1: Nuclear fragi 22.8 64 0.0014 19.8 1.6 22 140-162 19-40 (56)
318 PF06342 DUF1057: Alpha/beta h 22.7 4E+02 0.0087 22.2 6.6 54 76-134 13-74 (297)
319 TIGR01487 SPP-like sucrose-pho 22.5 3E+02 0.0064 20.9 5.8 35 116-159 28-62 (215)
320 cd03021 DsbA_GSTK DsbA family, 22.3 2.9E+02 0.0063 21.1 5.7 61 95-157 5-77 (209)
321 PF04800 ETC_C1_NDUFA4: ETC co 22.2 98 0.0021 21.4 2.6 23 140-163 57-79 (101)
322 KOG2603 Oligosaccharyltransfer 21.9 4.9E+02 0.011 22.0 7.0 49 72-120 43-95 (331)
323 PRK10976 putative hydrolase; P 21.8 3E+02 0.0065 21.6 5.8 34 116-158 29-62 (266)
324 TIGR01689 EcbF-BcbF capsule bi 21.7 2.6E+02 0.0055 20.0 4.8 44 113-157 31-81 (126)
325 COG3581 Uncharacterized protei 21.5 1.6E+02 0.0034 25.7 4.2 38 95-132 75-114 (420)
326 PRK07329 hypothetical protein; 21.3 2.6E+02 0.0057 22.1 5.3 50 103-159 50-99 (246)
327 PF06122 TraH: Conjugative rel 21.0 57 0.0012 27.8 1.5 22 99-120 95-116 (361)
328 PRK10530 pyridoxal phosphate ( 21.0 2.9E+02 0.0063 21.7 5.6 33 116-157 30-62 (272)
329 PF02120 Flg_hook: Flagellar h 20.6 2.4E+02 0.0052 17.9 4.7 44 88-131 34-77 (85)
330 TIGR02461 osmo_MPG_phos mannos 20.4 2.9E+02 0.0063 21.5 5.4 36 115-159 24-59 (225)
331 PF01136 Peptidase_U32: Peptid 20.4 3.1E+02 0.0067 21.2 5.5 54 109-174 2-59 (233)
332 PF10813 DUF2733: Protein of u 20.3 59 0.0013 17.6 0.9 14 73-86 14-27 (32)
333 cd00477 FTHFS Formyltetrahydro 20.1 1.9E+02 0.004 26.2 4.5 48 109-158 343-390 (524)
No 1
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.94 E-value=1.8e-26 Score=177.35 Aligned_cols=110 Identities=38% Similarity=0.694 Sum_probs=102.0
Q ss_pred CcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHH
Q 029690 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (189)
Q Consensus 67 ~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 146 (189)
..+++|+++|++|+.++|++++||++||+|||+||++|. +++.|++++++|+++|+.|++|+.|+|+.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999995 7999999999999999999999999999999999999999
Q ss_pred HHHhhCCcccceecccc-----chHHHHHHHhcCCC
Q 029690 147 FACTRFKAEFPIFDKVL-----ALQLYKFYKQKIHS 177 (189)
Q Consensus 147 ~~~~~~~~~fp~l~d~~-----~~p~~~~l~~~~~~ 177 (189)
|+.++++++||++.+.+ +||+|+||+...+.
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~ 117 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPT 117 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCC
Confidence 99447999999996666 99999999987763
No 2
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.94 E-value=4.5e-26 Score=177.78 Aligned_cols=111 Identities=35% Similarity=0.620 Sum_probs=101.7
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
...+..+|+|+++|.+|+.+++++++||++||+|||+|||+|+.++|.|++++++|+++|++||+|++|++..++.++.+
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999887777777899
Q ss_pred HHHHHHHhhCCcccceecccc-----chHHHHHHHhc
Q 029690 143 QIQEFACTRFKAEFPIFDKVL-----ALQLYKFYKQK 174 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~d~~-----~~p~~~~l~~~ 174 (189)
++++|+ ++++++||++.|.+ .++++++++..
T Consensus 93 ~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~ 128 (199)
T PTZ00056 93 DIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKAN 128 (199)
T ss_pred HHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHh
Confidence 999999 79999999997642 89999998744
No 3
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.92 E-value=1.3e-24 Score=162.68 Aligned_cols=108 Identities=56% Similarity=0.986 Sum_probs=93.0
Q ss_pred cccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEF 147 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~ 147 (189)
.+|+|+++|.+|+.+++++++||++||+||++||| |+.++|.|++++++|+++|+.+++|++|.+..++.++.+++++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 37999999999999999999999999999999999 99999999999999999999999999986544555678999999
Q ss_pred HHhhCCcccceecccc-----chHHHHHHHhcCC
Q 029690 148 ACTRFKAEFPIFDKVL-----ALQLYKFYKQKIH 176 (189)
Q Consensus 148 ~~~~~~~~fp~l~d~~-----~~p~~~~l~~~~~ 176 (189)
++++++++||++.|.+ ..+.|.++....|
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p 113 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAP 113 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCC
Confidence 9333899999998743 3567777655554
No 4
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.92 E-value=1.3e-24 Score=172.85 Aligned_cols=112 Identities=69% Similarity=1.168 Sum_probs=100.7
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
...|+.+|+|+++|.+|+.+++++++||++||+||++||++|..++|+|++++++|+++|++||+|+.|++..+++++.+
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ 152 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 152 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999877666777889
Q ss_pred HHHHHHHhhCCcccceecccc-----chHHHHHHHhc
Q 029690 143 QIQEFACTRFKAEFPIFDKVL-----ALQLYKFYKQK 174 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~d~~-----~~p~~~~l~~~ 174 (189)
++++|+.++++++||++.|.+ .++.|++++..
T Consensus 153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~ 189 (236)
T PLN02399 153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSN 189 (236)
T ss_pred HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHh
Confidence 999998568899999996533 57889988543
No 5
>PLN02412 probable glutathione peroxidase
Probab=99.92 E-value=3.3e-24 Score=163.03 Aligned_cols=110 Identities=68% Similarity=1.104 Sum_probs=97.2
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 144 (189)
..+.+|+|+++|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|+.|++|+.|++...+.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999997665566678888
Q ss_pred HHHHHhhCCcccceeccc-----cchHHHHHHHhc
Q 029690 145 QEFACTRFKAEFPIFDKV-----LALQLYKFYKQK 174 (189)
Q Consensus 145 ~~~~~~~~~~~fp~l~d~-----~~~p~~~~l~~~ 174 (189)
++++.++++++||++.|. ...+.|.++...
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~ 119 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAE 119 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhh
Confidence 777548899999999752 278889988653
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.91 E-value=5e-24 Score=164.27 Aligned_cols=112 Identities=46% Similarity=0.876 Sum_probs=97.4
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCE-EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~-vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 143 (189)
.+..+|+|+++|.+|+.+++++++||+ +|+.|||+|||+|+.++|.|++++++|+++|+.|++|++|++..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 467899999999999999999999995 4567799999999999999999999999999999999998766666667899
Q ss_pred HHHHHHhhCCcccceeccc--c---chHHHHHHHhcCC
Q 029690 144 IQEFACTRFKAEFPIFDKV--L---ALQLYKFYKQKIH 176 (189)
Q Consensus 144 ~~~~~~~~~~~~fp~l~d~--~---~~p~~~~l~~~~~ 176 (189)
+++|++++++++||++.|. + .+++|.++.++..
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~ 133 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSE 133 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCC
Confidence 9999856889999999763 2 5799999887653
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.91 E-value=1.2e-23 Score=157.51 Aligned_cols=105 Identities=42% Similarity=0.805 Sum_probs=93.9
Q ss_pred ccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 69 ~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
+.+|++.|.+|+++++++++||++||+||++|||+|..++|.|++++++|+++|+.|++|+.+.++..++++.+++++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998776666667899999999
Q ss_pred HhhCCcccceeccc-----cchHHHHHHHh
Q 029690 149 CTRFKAEFPIFDKV-----LALQLYKFYKQ 173 (189)
Q Consensus 149 ~~~~~~~fp~l~d~-----~~~p~~~~l~~ 173 (189)
+++++++||++.|. +.++.+.++..
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~ 111 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVD 111 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHh
Confidence 33489999999773 36788888764
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-22 Score=148.59 Aligned_cols=110 Identities=53% Similarity=0.944 Sum_probs=104.9
Q ss_pred CcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHH
Q 029690 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (189)
Q Consensus 67 ~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 146 (189)
..+.+|++++++|+.++|++++||++||...||.|+... +...|+.||++|+++|+.|+++..|+|..+|+++.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 467899999999999999999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred HHHhhCCcccceecccc-----chHHHHHHHhcCCC
Q 029690 147 FACTRFKAEFPIFDKVL-----ALQLYKFYKQKIHS 177 (189)
Q Consensus 147 ~~~~~~~~~fp~l~d~~-----~~p~~~~l~~~~~~ 177 (189)
|+..+||++||++...+ +||+|++|++..++
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g 117 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPG 117 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCC
Confidence 99999999999998888 99999999987765
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.88 E-value=6e-22 Score=142.38 Aligned_cols=97 Identities=28% Similarity=0.558 Sum_probs=89.4
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecC-CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 143 (189)
+|+.+|+|++++.+|+.+++++++||++||.||++ |||.|..++++|++++++|+++|+.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 69999999999999999999999999999999999 99999999999999999999999999999998 7889
Q ss_pred HHHHHHhhCCcccceeccccchHHHHHH
Q 029690 144 IQEFACTRFKAEFPIFDKVLALQLYKFY 171 (189)
Q Consensus 144 ~~~~~~~~~~~~fp~l~d~~~~p~~~~l 171 (189)
++++. ++++++||++.|.+ ..+.+.+
T Consensus 73 ~~~~~-~~~~~~~~~~~D~~-~~~~~~~ 98 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSDPD-GELAKAF 98 (124)
T ss_dssp HHHHH-HHHTCSSEEEEETT-SHHHHHT
T ss_pred hhhhh-hhhccccccccCcc-hHHHHHc
Confidence 99999 78899999999976 4444444
No 10
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.88 E-value=1.1e-21 Score=138.11 Aligned_cols=103 Identities=61% Similarity=1.086 Sum_probs=95.5
Q ss_pred ccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 69 ~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
+.+|+++|++|+.++|++++||++||...|+.|+.-. +..+|++|+++|+++|++|++++.++|+.+|+++.++++.++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 4689999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhhCCcccceecccc-----chHHHHHHH
Q 029690 149 CTRFKAEFPIFDKVL-----ALQLYKFYK 172 (189)
Q Consensus 149 ~~~~~~~fp~l~d~~-----~~p~~~~l~ 172 (189)
..+++++||++...+ +||+|+||+
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 777899999998887 999999996
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.86 E-value=9.3e-22 Score=145.71 Aligned_cols=99 Identities=28% Similarity=0.490 Sum_probs=86.6
Q ss_pred cCCCcccCeEEeC--CCCCeeecCccCCCEEEEEEecC-CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCC
Q 029690 64 QSKTSVHDFSVKD--AKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (189)
Q Consensus 64 ~~g~~~p~f~l~d--~~G~~~~l~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~ 140 (189)
++|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.|++++++|+++|+.+++|+.+ +
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~ 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence 3799999999966 99999999999999999999999 99999999999999999999999999999998 3
Q ss_pred HHHHHHHHHhhCCcccceeccccchHHHHHHH
Q 029690 141 NEQIQEFACTRFKAEFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 141 ~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~ 172 (189)
...+++|+ ++++.+||++.|.+ ..+.+.+.
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~D~~-~~~~~~~~ 102 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVLSDPD-GALAKALG 102 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEEEETT-SHHHHHTT
T ss_pred CHHHHHHH-HhhCCCceEEechH-HHHHHHhC
Confidence 44499999 78999999999965 55555555
No 12
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.85 E-value=7.4e-21 Score=141.14 Aligned_cols=100 Identities=20% Similarity=0.365 Sum_probs=88.8
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCC-CEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~g-k~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
.+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..++|+|++++++++++|+++++|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 37999999999999999999999999 88888888 8999999999999999999999889999999988 68
Q ss_pred HHHHHHHHhhCCcccceecccc-chHHHHHHH
Q 029690 142 EQIQEFACTRFKAEFPIFDKVL-ALQLYKFYK 172 (189)
Q Consensus 142 ~~~~~~~~~~~~~~fp~l~d~~-~~p~~~~l~ 172 (189)
+.+++|+ ++++++||+++|.+ ...+.+.++
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~g 104 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPHGEVAKAYG 104 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCchhHHHHHhC
Confidence 8899999 78899999999875 234444443
No 13
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.85 E-value=1e-20 Score=143.84 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=85.9
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCC-CcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
..+|+.+|+|++.|.+|+.+++++++||++||+||++| ||+|..+++.|+++++++. |++|++||.| ++
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~ 87 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LP 87 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CH
Confidence 34899999999999999999999999999999999999 9999999999999999983 6999999998 67
Q ss_pred HHHHHHHHhhCCcc-cceeccccchHHHHHH
Q 029690 142 EQIQEFACTRFKAE-FPIFDKVLALQLYKFY 171 (189)
Q Consensus 142 ~~~~~~~~~~~~~~-fp~l~d~~~~p~~~~l 171 (189)
+..++|+ +++++. +|+++|.....+.+.+
T Consensus 88 ~~~~~f~-~~~~~~~~~~lsD~~~~~~~~~~ 117 (167)
T PRK00522 88 FAQKRFC-GAEGLENVITLSDFRDHSFGKAY 117 (167)
T ss_pred HHHHHHH-HhCCCCCceEeecCCccHHHHHh
Confidence 8889999 788997 7999996533443333
No 14
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.85 E-value=1.9e-20 Score=138.34 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCC-CcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~-C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 143 (189)
+|+.+|+|++.|.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ |+.|++||+| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999998 6999999999999999984 6999999998 6788
Q ss_pred HHHHHHhhCCc-ccceecccc
Q 029690 144 IQEFACTRFKA-EFPIFDKVL 163 (189)
Q Consensus 144 ~~~~~~~~~~~-~fp~l~d~~ 163 (189)
.++|. ++++. +||+++|.+
T Consensus 72 ~~~~~-~~~~~~~~~~l~D~~ 91 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSDFR 91 (143)
T ss_pred HHHHH-HhcCCCCceEeecCc
Confidence 89998 77786 899999975
No 15
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.84 E-value=1.3e-20 Score=140.93 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=85.6
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecC-CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
.+|+.+|+|+++|.+|+.+++++++||++||+||++ |||.|..+++.|++++++++++|+++|+|+.| +.+
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~~ 76 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KPE 76 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHH
Confidence 479999999999999999999999999999999986 68889999999999999999999999999988 789
Q ss_pred HHHHHHHhhCCcccceecccc
Q 029690 143 QIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~d~~ 163 (189)
++++|+ ++++++||+++|.+
T Consensus 77 ~~~~~~-~~~~~~~~~l~D~~ 96 (154)
T PRK09437 77 KLSRFA-EKELLNFTLLSDED 96 (154)
T ss_pred HHHHHH-HHhCCCCeEEECCC
Confidence 999999 78899999999877
No 16
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-20 Score=139.03 Aligned_cols=100 Identities=17% Similarity=0.328 Sum_probs=91.5
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
..+|+.+|+|+|++.+|++++|++++||+||++|+. .++|.|..|...+++.+.+|.+.|.+|++||.| +.
T Consensus 4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s~ 75 (157)
T COG1225 4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------SP 75 (157)
T ss_pred CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------CH
Confidence 458999999999999999999999999988888886 799999999999999999999999999999999 89
Q ss_pred HHHHHHHHhhCCcccceecccc--chHHHHHH
Q 029690 142 EQIQEFACTRFKAEFPIFDKVL--ALQLYKFY 171 (189)
Q Consensus 142 ~~~~~~~~~~~~~~fp~l~d~~--~~p~~~~l 171 (189)
+..++|+ ++++++||+++|.+ ....|...
T Consensus 76 ~~~~~F~-~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 76 KSHKKFA-EKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred HHHHHHH-HHhCCCceeeECCcHHHHHHhCcc
Confidence 9999999 89999999999999 34444443
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.83 E-value=3e-20 Score=136.36 Aligned_cols=88 Identities=20% Similarity=0.398 Sum_probs=82.9
Q ss_pred CcccCeEEeCCCCCeeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHH
Q 029690 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (189)
Q Consensus 67 ~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 145 (189)
+.+|+|+++|.+|+.+++++++||++||+||+ +|||.|..+++.|.++++++.++|+++++|++| +.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 36899999999999999999999999999995 899999999999999999999989999999988 789999
Q ss_pred HHHHhhCCcccceecccc
Q 029690 146 EFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 146 ~~~~~~~~~~fp~l~d~~ 163 (189)
+|+ ++++++||+++|.+
T Consensus 73 ~~~-~~~~~~~~~l~D~~ 89 (140)
T cd03017 73 KFA-EKYGLPFPLLSDPD 89 (140)
T ss_pred HHH-HHhCCCceEEECCc
Confidence 999 78899999999988
No 18
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=137.51 Aligned_cols=113 Identities=64% Similarity=1.015 Sum_probs=107.5
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 144 (189)
....+.+|+++|++|+.++|+.|+||++||...||.|+.-.....+|+.|+++|+++|++|+++..++|+.+|+++.+++
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 45789999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcccceecccc-----chHHHHHHHhcCCC
Q 029690 145 QEFACTRFKAEFPIFDKVL-----ALQLYKFYKQKIHS 177 (189)
Q Consensus 145 ~~~~~~~~~~~fp~l~d~~-----~~p~~~~l~~~~~~ 177 (189)
..+++.+++.+||++...+ ++|+|++|++..++
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG 127 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCC
Confidence 9999999999999998887 99999999987764
No 19
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.83 E-value=6.1e-20 Score=135.05 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=87.5
Q ss_pred cccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcc-cHHHHHHHHHHHHHhccCC---cEEEEEecCCCCCCCCCCHHH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ 143 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~~---v~vi~vs~d~~~~~~~~~~~~ 143 (189)
.+|+|++.|.+|+.+++++++||++||+||++||++ |..+++.|+++++++++++ +++++|+.|. +.++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 369999999999999999999999999999999997 9999999999999998864 9999999983 3357899
Q ss_pred HHHHHHhhCCcccceecccc--chHHHHHHH
Q 029690 144 IQEFACTRFKAEFPIFDKVL--ALQLYKFYK 172 (189)
Q Consensus 144 ~~~~~~~~~~~~fp~l~d~~--~~p~~~~l~ 172 (189)
+++|+ ++++.+||++.|.+ ...+.+.++
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g 106 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFG 106 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhc
Confidence 99999 78899999999875 345555554
No 20
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.82 E-value=1.2e-19 Score=138.43 Aligned_cols=97 Identities=18% Similarity=0.287 Sum_probs=83.2
Q ss_pred CCCcccCeEEeCCCC----CeeecCccCCCEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 65 SKTSVHDFSVKDAKG----QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G----~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
+|+.+|+|++++.+| +.+++++++||++||+|| ++||++|..+++.|++++++|.++|+.+++||+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 589999999999988 799999999999999999 7999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhh-------CCcccceeccccchHHHHHH
Q 029690 140 DNEQIQEFACTR-------FKAEFPIFDKVLALQLYKFY 171 (189)
Q Consensus 140 ~~~~~~~~~~~~-------~~~~fp~l~d~~~~p~~~~l 171 (189)
+.+..++|. +. .+++||+++|.+ ..+.+.+
T Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~f~~l~D~~-~~~~~~~ 109 (173)
T cd03015 73 SHFSHLAWR-NTPRKEGGLGKINFPLLADPK-KKISRDY 109 (173)
T ss_pred CHHHHHHHH-HhhhhhCCccCcceeEEECCc-hhHHHHh
Confidence 455556665 33 468999999987 3333333
No 21
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.82 E-value=1.1e-19 Score=140.62 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=80.8
Q ss_pred cCCCcccCeEEeC-CCCC--eeecCccCCCEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 64 QSKTSVHDFSVKD-AKGQ--DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 64 ~~g~~~p~f~l~d-~~G~--~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
.+|+.+|+|++.+ .+|+ .+++++++||++||+|| ++|||+|..+++.|++++++|+++|++|++||+|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 3799999999999 5787 68888999999999999 9999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhh----CCcccceecccc
Q 029690 140 DNEQIQEFACTR----FKAEFPIFDKVL 163 (189)
Q Consensus 140 ~~~~~~~~~~~~----~~~~fp~l~d~~ 163 (189)
+.+..++|. +. .+++||+++|.+
T Consensus 75 ~~~~~~~~~-~~~~~~~~l~fpllsD~~ 101 (187)
T TIGR03137 75 THFVHKAWH-DTSEAIGKITYPMLGDPT 101 (187)
T ss_pred CHHHHHHHH-hhhhhccCcceeEEECCc
Confidence 567777776 33 368999999987
No 22
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.82 E-value=9e-20 Score=138.80 Aligned_cols=104 Identities=22% Similarity=0.396 Sum_probs=90.9
Q ss_pred CCcccCeEEeCCCCCeeecCcc-CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHH
Q 029690 66 KTSVHDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (189)
Q Consensus 66 g~~~p~f~l~d~~G~~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 144 (189)
|+.+|+|++.+.+|+.++++++ +|+++||+||++|||.|..+++.|.+++++|+++++.+++|++|....++.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 899999999999999999999999999999998889999999985333333588999
Q ss_pred HHHHHhhCCcccceeccccchHHHHHH
Q 029690 145 QEFACTRFKAEFPIFDKVLALQLYKFY 171 (189)
Q Consensus 145 ~~~~~~~~~~~fp~l~d~~~~p~~~~l 171 (189)
++|+ ++++++||++.|.+ ..+.+.+
T Consensus 81 ~~~~-~~~~~~~~~l~D~~-~~~~~~~ 105 (171)
T cd02969 81 KAKA-KEHGYPFPYLLDET-QEVAKAY 105 (171)
T ss_pred HHHH-HHCCCCceEEECCc-hHHHHHc
Confidence 9999 78999999999987 3333433
No 23
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.81 E-value=1.2e-19 Score=131.42 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=77.1
Q ss_pred CCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccce
Q 029690 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (189)
Q Consensus 79 G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~ 158 (189)
|+.+++++++||++||+||++|||+|.+++|.|++++++|+++++.+++|+.+.+.. .++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHH-HHcCCCCCE
Confidence 578999999999999999999999999999999999999999899999999864322 23789999999 789999999
Q ss_pred eccccchHHHHHHH
Q 029690 159 FDKVLALQLYKFYK 172 (189)
Q Consensus 159 l~d~~~~p~~~~l~ 172 (189)
+.|.+ ..+++.++
T Consensus 90 ~~D~~-~~~~~~~~ 102 (126)
T cd03012 90 ANDND-YATWRAYG 102 (126)
T ss_pred EECCc-hHHHHHhC
Confidence 99887 34444443
No 24
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=2.9e-19 Score=135.71 Aligned_cols=93 Identities=24% Similarity=0.444 Sum_probs=87.5
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
..+|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.+++++++++++++.+++|+.|. +.+
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~~ 107 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TEL 107 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CHH
Confidence 4489999999999999999999999999999999999999999999999999999998889999999985 778
Q ss_pred HHHHHHHhhCCcccceecccc
Q 029690 143 QIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~d~~ 163 (189)
++++|+ ++++++||++.|.+
T Consensus 108 ~~~~~~-~~~~~~~~~~~d~~ 127 (173)
T PRK03147 108 AVKNFV-NRYGLTFPVAIDKG 127 (173)
T ss_pred HHHHHH-HHhCCCceEEECCc
Confidence 999999 88999999999876
No 25
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.80 E-value=3.5e-19 Score=131.70 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=80.5
Q ss_pred cccCeEEeCCCCCeeecCccC-CC-EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYK-GK-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~-gk-~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 145 (189)
.+|+|+++|.+|+.++++++. ++ ++|++||++|||+|+.+++.|++++++++++|+.+++|+.| +.+..+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999875 45 55555679999999999999999999999889999999988 567777
Q ss_pred HHHHhhCCcccceeccccchHHHHHHH
Q 029690 146 EFACTRFKAEFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 146 ~~~~~~~~~~fp~l~d~~~~p~~~~l~ 172 (189)
+|. ++++++||+++|.+ ..+++.++
T Consensus 73 ~~~-~~~~~~~p~~~D~~-~~~~~~~g 97 (149)
T cd02970 73 AFD-KGKFLPFPVYADPD-RKLYRALG 97 (149)
T ss_pred HHH-HhcCCCCeEEECCc-hhHHHHcC
Confidence 888 78899999999988 34444443
No 26
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.80 E-value=4.2e-19 Score=130.17 Aligned_cols=95 Identities=19% Similarity=0.361 Sum_probs=84.9
Q ss_pred cccCeEEeCCCCCeeecCccCCCEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 146 (189)
.+|+|++.|.+|+.+++++++||++||+|| ++||+.|..+++.|++++++++++++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 6899999999999999999998888999999988 6889999
Q ss_pred HHHhhC-CcccceeccccchHHHHHHH
Q 029690 147 FACTRF-KAEFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 147 ~~~~~~-~~~fp~l~d~~~~p~~~~l~ 172 (189)
|. +++ +.+||++.|.+. .+.+.++
T Consensus 73 ~~-~~~~~~~~~~l~D~~~-~~~~~~g 97 (140)
T cd02971 73 WA-EKEGGLNFPLLSDPDG-EFAKAYG 97 (140)
T ss_pred HH-hcccCCCceEEECCCh-HHHHHcC
Confidence 98 777 999999998873 4444443
No 27
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.78 E-value=4.3e-19 Score=136.95 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=76.2
Q ss_pred cCCCcccCeEEeCCCC--CeeecCcc-CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCC
Q 029690 64 QSKTSVHDFSVKDAKG--QDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G--~~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~ 140 (189)
.+|+++|+|++.|.+| +.++++++ +||++||+||++|||+|++++|.|+++++ +|++|++|+.|+ +
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~-------~ 108 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKD-------D 108 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------C
Confidence 3799999999999984 67777765 79999999999999999999999988864 469999999874 6
Q ss_pred HHHHHHHHHhhCCcccce-ecccc
Q 029690 141 NEQIQEFACTRFKAEFPI-FDKVL 163 (189)
Q Consensus 141 ~~~~~~~~~~~~~~~fp~-l~d~~ 163 (189)
.+++++|+ ++++++||+ +.|.+
T Consensus 109 ~~~~~~~~-~~~~~~~~~~~~D~~ 131 (185)
T PRK15412 109 RQKAISWL-KELGNPYALSLFDGD 131 (185)
T ss_pred HHHHHHHH-HHcCCCCceEEEcCC
Confidence 78899999 788999995 66766
No 28
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.78 E-value=1.4e-18 Score=135.94 Aligned_cols=91 Identities=25% Similarity=0.480 Sum_probs=77.9
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCCEEE-EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLL-IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk~vl-v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
.+|+.+|+|++.+.+| .+++++++||++| ++||++|||+|..+++.|.+++++|+++|++|++||+| +.+
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~ 73 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIY 73 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 3799999999999888 6999999999665 47999999999999999999999999999999999998 555
Q ss_pred HHHHHHH---hhCC--cccceecccc
Q 029690 143 QIQEFAC---TRFK--AEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~~~---~~~~--~~fp~l~d~~ 163 (189)
..++|++ ++++ ++||+++|.+
T Consensus 74 ~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 74 SHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred HHHHHHHhHHHhcCCCceEEEEECCC
Confidence 5444431 3555 5899999998
No 29
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.78 E-value=1.4e-18 Score=123.29 Aligned_cols=84 Identities=14% Similarity=0.268 Sum_probs=74.2
Q ss_pred cCeEEeCCCCCeeecCccC-CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 70 HDFSVKDAKGQDVDLSIYK-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 70 p~f~l~d~~G~~~~l~~~~-gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
|+|+++|.+|+.+++++++ ||++||+||++||++|+.++|.+++++++++++ +.++.++ |. +.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~-~~vi~v~-~~-------~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW-LDVVLAS-DG-------EKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC-cEEEEEe-CC-------CHHHHHHHH
Confidence 7899999999999999997 999999999999999999999999999988654 8898886 42 788999999
Q ss_pred HhhCCcc-cceecccc
Q 029690 149 CTRFKAE-FPIFDKVL 163 (189)
Q Consensus 149 ~~~~~~~-fp~l~d~~ 163 (189)
+++++. ||++.+.+
T Consensus 72 -~~~~~~~~p~~~~~~ 86 (114)
T cd02967 72 -KKHGLEAFPYVLSAE 86 (114)
T ss_pred -HHhCCCCCcEEecHH
Confidence 788985 99987543
No 30
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.77 E-value=1.9e-18 Score=125.13 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=76.0
Q ss_pred cccCeEEeCCCC--CeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHH
Q 029690 68 SVHDFSVKDAKG--QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (189)
Q Consensus 68 ~~p~f~l~d~~G--~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 145 (189)
.+|+|+++|.+| +.+++++++||++||+||++|||+|+.++|.|+++.+++ ++.|++|+.++ +.++++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~-------~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKD-------NPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC-------CHHHHH
Confidence 579999999999 889999999999999999999999999999999998875 49999999874 789999
Q ss_pred HHHHhhCCcccc-eecccc
Q 029690 146 EFACTRFKAEFP-IFDKVL 163 (189)
Q Consensus 146 ~~~~~~~~~~fp-~l~d~~ 163 (189)
+|+ +++++.|| ++.|.+
T Consensus 72 ~~~-~~~~~~~~~~~~D~~ 89 (127)
T cd03010 72 AWL-ARHGNPYAAVGFDPD 89 (127)
T ss_pred HHH-HhcCCCCceEEECCc
Confidence 999 78899986 556765
No 31
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.77 E-value=2.2e-18 Score=127.81 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=62.6
Q ss_pred CeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC-------CcEEEEEecCCCCCCCCCCHHHHHHHHHhhC
Q 029690 80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-------GLEILAFPCNQFGAQEPGDNEQIQEFACTRF 152 (189)
Q Consensus 80 ~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-------~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~ 152 (189)
..+++++++||+++|+|||||||+|+.++|.|++++++++++ ++.+|+||.|. +.+++++|+ ++.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHC
Confidence 356888999999999999999999999999999999988653 69999999984 678899999 788
Q ss_pred Cccccee
Q 029690 153 KAEFPIF 159 (189)
Q Consensus 153 ~~~fp~l 159 (189)
+++|+.+
T Consensus 88 ~~~~~~~ 94 (146)
T cd03008 88 PKKWLFL 94 (146)
T ss_pred CCCceee
Confidence 9887443
No 32
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.77 E-value=5.3e-18 Score=130.99 Aligned_cols=92 Identities=10% Similarity=0.204 Sum_probs=81.1
Q ss_pred cCCCcccCeEEeCC-CC--CeeecCccCCCEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 64 ~~g~~~p~f~l~d~-~G--~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
.+|+.+|+|++... +| +.+++++++||++||+|| ++|||.|..+++.|++++++|.++|++|++||.|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------- 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 48999999999874 34 457888999999999999 8999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhh---CCcccceecccc
Q 029690 140 DNEQIQEFACTR---FKAEFPIFDKVL 163 (189)
Q Consensus 140 ~~~~~~~~~~~~---~~~~fp~l~d~~ 163 (189)
+.+..++|.... .+++||+++|.+
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEEEcCc
Confidence 788999998322 488999999987
No 33
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.77 E-value=2.3e-18 Score=135.82 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=80.2
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCCE-EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk~-vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
.+|+.+|+|++.+.+|+...+++++||+ +|++||++|||.|..+++.|++++++|.++|+++++||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 4899999999999999988889999996 5789999999999999999999999999999999999999 555
Q ss_pred HHHHH---HHh--hCCcccceecccc
Q 029690 143 QIQEF---ACT--RFKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~---~~~--~~~~~fp~l~d~~ 163 (189)
..++| +++ ..+++||+++|.+
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~D~~ 100 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIADDL 100 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEECCC
Confidence 55444 422 3578999999987
No 34
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.76 E-value=4.2e-18 Score=133.31 Aligned_cols=89 Identities=13% Similarity=0.296 Sum_probs=77.8
Q ss_pred CCCcccCeEEeCCCCCeeecCccCC-C-EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKG-K-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~g-k-~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
+|+.+|+|++.+.+| .+++++++| | ++|++||++|||.|..+++.|++++++|+++|++|++||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 488999999999998 489999998 6 45679999999999999999999999999999999999999 566
Q ss_pred HHHHHHHhh------CCcccceecccc
Q 029690 143 QIQEFACTR------FKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~~~~~------~~~~fp~l~d~~ 163 (189)
..++|. +. .+++||+++|.+
T Consensus 72 ~~~~~~-~~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 72 SHIKWI-EDIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred HHHHHH-hhHHHhcCCCCceeEEECch
Confidence 655554 22 689999999988
No 35
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.76 E-value=3.9e-18 Score=132.06 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=75.2
Q ss_pred cCCCcccCeEEeCCCCCeeecC--ccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~--~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
.+|+.+|+|+++|.+|+.++++ +++||+++|+||++|||+|++++|.++++++++ ++.+++|+.| +.
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~~ 115 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------TP 115 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------CH
Confidence 4899999999999999999995 569999999999999999999999999988753 5788899855 78
Q ss_pred HHHHHHHHhhCCcccceec
Q 029690 142 EQIQEFACTRFKAEFPIFD 160 (189)
Q Consensus 142 ~~~~~~~~~~~~~~fp~l~ 160 (189)
++.++|+ ++++++||.+.
T Consensus 116 ~~~~~~~-~~~~~~~~~~~ 133 (189)
T TIGR02661 116 AEHRRFL-KDHELGGERYV 133 (189)
T ss_pred HHHHHHH-HhcCCCcceee
Confidence 8999999 78899988664
No 36
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.75 E-value=9.5e-18 Score=146.40 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=85.5
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
...++.+|+|++.|.+|+.++++ +||+|||+|||+||++|+.++|.|++++++++.+++.||+|+++..... ++.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e--~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHE--KKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccc--ccHH
Confidence 34678899999999999999998 8999999999999999999999999999999987899999998642222 2568
Q ss_pred HHHHHHHhhCCc-ccceeccccchHHHHHHH
Q 029690 143 QIQEFACTRFKA-EFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 143 ~~~~~~~~~~~~-~fp~l~d~~~~p~~~~l~ 172 (189)
++++|+ +..+. ++|++.|.+ ..+.+.++
T Consensus 108 ~~~~~~-~~~~y~~~pV~~D~~-~~lak~fg 136 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVLTDNG-GTLAQSLN 136 (521)
T ss_pred HHHHHH-HhCCCcccceecccc-HHHHHHcC
Confidence 888888 55555 689999876 44444444
No 37
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.75 E-value=5.7e-18 Score=133.55 Aligned_cols=92 Identities=14% Similarity=0.298 Sum_probs=76.8
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCCEEE-EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLL-IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk~vl-v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
.+|+.+|+|++.+.+|+....++++||++| ++||++|||.|..+++.|++++++|+++|++|++||+| +..
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~~ 79 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SNI 79 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CHH
Confidence 489999999999999975444558999655 59999999999999999999999999999999999999 555
Q ss_pred HHHHH---HHh--hCCcccceecccc
Q 029690 143 QIQEF---ACT--RFKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~---~~~--~~~~~fp~l~d~~ 163 (189)
..++| .++ ..+++||+++|.+
T Consensus 80 ~h~aw~~~~~~~~~~~i~fPllsD~~ 105 (215)
T PRK13191 80 SHIEWVMWIEKNLKVEVPFPIIADPM 105 (215)
T ss_pred HHHHHHhhHHHhcCCCCceEEEECCc
Confidence 54444 322 3478999999988
No 38
>PRK15000 peroxidase; Provisional
Probab=99.74 E-value=2.6e-17 Score=128.54 Aligned_cols=91 Identities=11% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCcccCeEEeCCC--CCe---eecCcc-CCCEEEEEEecC-CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCC
Q 029690 65 SKTSVHDFSVKDAK--GQD---VDLSIY-KGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (189)
Q Consensus 65 ~g~~~p~f~l~d~~--G~~---~~l~~~-~gk~vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~ 137 (189)
+|+.+|+|++.+.. |+. .+++++ +||++||+||++ ||+.|..++++|++++++|+++|++|++||+|
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D------ 77 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD------ 77 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 79999999999874 453 456665 899999999995 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHH---hhCC---cccceecccc
Q 029690 138 PGDNEQIQEFAC---TRFK---AEFPIFDKVL 163 (189)
Q Consensus 138 ~~~~~~~~~~~~---~~~~---~~fp~l~d~~ 163 (189)
+.+..+.|.. ++.| ++||+++|.+
T Consensus 78 --~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 78 --SEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred --CHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 5666566541 2344 6999999998
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.73 E-value=9.3e-18 Score=128.14 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=74.9
Q ss_pred ccCCCcccCeEEeCCCCC--eeecCcc-CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 63 SQSKTSVHDFSVKDAKGQ--DVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~--~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
..+|.++|+|+++|.+|+ .++++++ +||+++|+||++|||+|+.++|.++++++ +|+++++|+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~------- 102 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD------- 102 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence 348999999999999997 4555565 79999999999999999999999988865 369999999864
Q ss_pred CHHHHHHHHHhhCCcccc-eecccc
Q 029690 140 DNEQIQEFACTRFKAEFP-IFDKVL 163 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~fp-~l~d~~ 163 (189)
+.++.++|+ ++++++|| ++.|.+
T Consensus 103 ~~~~~~~~~-~~~~~~f~~v~~D~~ 126 (173)
T TIGR00385 103 QSQNALKFL-KELGNPYQAILIDPN 126 (173)
T ss_pred ChHHHHHHH-HHcCCCCceEEECCC
Confidence 567788998 78899998 556766
No 40
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.73 E-value=1.6e-17 Score=156.32 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=86.4
Q ss_pred ccCCCcccCeEEeC--CCCCeeec-CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 63 SQSKTSVHDFSVKD--AKGQDVDL-SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 63 ~~~g~~~p~f~l~d--~~G~~~~l-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
...|+.+|+|...+ .+|+.+++ ++++||++||+|||+||++|+.++|.|++++++|+++++.|++|+.+.+..+ +
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~--~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE--K 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc--c
Confidence 44799999999876 78999998 5899999999999999999999999999999999999999999987543222 2
Q ss_pred CHHHHHHHHHhhCCcccceecccc
Q 029690 140 DNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
+.+++++++ ++++++||++.|.+
T Consensus 469 ~~~~~~~~~-~~~~i~~pvv~D~~ 491 (1057)
T PLN02919 469 DLEAIRNAV-LRYNISHPVVNDGD 491 (1057)
T ss_pred cHHHHHHHH-HHhCCCccEEECCc
Confidence 678999999 79999999999877
No 41
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.73 E-value=4.1e-17 Score=131.61 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=79.1
Q ss_pred ccCCCcccCeEEeC-CCCC--eeecCcc-CCCEEEEEEe-cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCC
Q 029690 63 SQSKTSVHDFSVKD-AKGQ--DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (189)
Q Consensus 63 ~~~g~~~p~f~l~d-~~G~--~~~l~~~-~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~ 137 (189)
..+|+.+|+|++.+ .+|+ .++++++ +||++|++|| ++|||+|..|++.|++++++|+++|++|++||+|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 45999999999988 5664 5899998 8887777777 7999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHh------hCCcccceecccc
Q 029690 138 PGDNEQIQEFACT------RFKAEFPIFDKVL 163 (189)
Q Consensus 138 ~~~~~~~~~~~~~------~~~~~fp~l~d~~ 163 (189)
+.+..++|... ..+++||+++|.+
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~ 171 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLFSDIS 171 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence 66666666521 2578999999987
No 42
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.72 E-value=4.7e-17 Score=126.99 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=77.6
Q ss_pred cCCCcccCeEEeC----CCCCeeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCC
Q 029690 64 QSKTSVHDFSVKD----AKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (189)
Q Consensus 64 ~~g~~~p~f~l~d----~~G~~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~ 138 (189)
.+|+.+|+|++.+ .+|+++++++++||++||+||+ +||+.|..+++.|.+++++|+++|++|++||+|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------- 79 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------- 79 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------
Confidence 4899999999765 4678999999999999999996 789999999999999999999999999999998
Q ss_pred CCHHHHHHHHH-hh-----CCcccceecccc
Q 029690 139 GDNEQIQEFAC-TR-----FKAEFPIFDKVL 163 (189)
Q Consensus 139 ~~~~~~~~~~~-~~-----~~~~fp~l~d~~ 163 (189)
+.+...+|.. .+ .+++||+++|.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~fpll~D~~ 109 (199)
T PTZ00253 80 -SEYAHLQWTLQERKKGGLGTMAIPMLADKT 109 (199)
T ss_pred -CHHHHHHHHhChHhhCCccccccceEECcH
Confidence 4544444431 11 147999999987
No 43
>PRK13189 peroxiredoxin; Provisional
Probab=99.70 E-value=1e-16 Score=127.10 Aligned_cols=91 Identities=20% Similarity=0.394 Sum_probs=77.1
Q ss_pred cCCCcccCeEEeCCCCCeeecCc-cCCC-EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSI-YKGK-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~-~~gk-~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
.+|+.+|+|++.+.+|+ +++++ ++|| ++|++||++|||.|..+++.|++++++|+++|++|++||+| +.
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~~ 80 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------QV 80 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CH
Confidence 48999999999999996 67766 5999 55668899999999999999999999999999999999999 56
Q ss_pred HHHHHHHH---hh--CCcccceecccc
Q 029690 142 EQIQEFAC---TR--FKAEFPIFDKVL 163 (189)
Q Consensus 142 ~~~~~~~~---~~--~~~~fp~l~d~~ 163 (189)
...++|.. ++ .+++||+++|.+
T Consensus 81 ~~h~aw~~~~~~~~g~~i~fPllsD~~ 107 (222)
T PRK13189 81 FSHIKWVEWIKEKLGVEIEFPIIADDR 107 (222)
T ss_pred HHHHHHHHhHHHhcCcCcceeEEEcCc
Confidence 66656652 11 358999999988
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.69 E-value=7.8e-17 Score=115.73 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=74.8
Q ss_pred cCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHH
Q 029690 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (189)
Q Consensus 70 p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 149 (189)
|+|+++|.+|+.+++.+.+||+++|+||++||++|+.++|.|++++++ +.+++|++|. ++.+++++|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 789999999999999999999999999999999999999999999876 6788898873 2689999999
Q ss_pred hhCCcccceecccc
Q 029690 150 TRFKAEFPIFDKVL 163 (189)
Q Consensus 150 ~~~~~~fp~l~d~~ 163 (189)
++++++||++.|.+
T Consensus 69 ~~~~~~~~~~~d~~ 82 (123)
T cd03011 69 QKKGYGFPVINDPD 82 (123)
T ss_pred HHcCCCccEEECCC
Confidence 78899999999876
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.69 E-value=2.3e-16 Score=110.30 Aligned_cols=86 Identities=30% Similarity=0.534 Sum_probs=79.1
Q ss_pred CeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 029690 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT 150 (189)
Q Consensus 71 ~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~ 150 (189)
+|++.+.+|+.+++++++||+++|.||++||++|...++.+.++.+++++.++.+++|++|. . +.+++++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~----~--~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD----D--DPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC----C--CHHHHHHHH-H
Confidence 57889999999999999999999999999999999999999999999987779999999983 1 489999999 7
Q ss_pred hCCcccceecccc
Q 029690 151 RFKAEFPIFDKVL 163 (189)
Q Consensus 151 ~~~~~fp~l~d~~ 163 (189)
+++.+||++.|.+
T Consensus 74 ~~~~~~~~~~~~~ 86 (116)
T cd02966 74 KYGITFPVLLDPD 86 (116)
T ss_pred HcCCCcceEEcCc
Confidence 8899999999875
No 46
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.68 E-value=1.8e-16 Score=119.05 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=80.9
Q ss_pred CCCcccCeEEeCCC---CCeeecCc-cCCC-EEEEEEecCCCcccHHH-HHHHHHHHHHhccCCc-EEEEEecCCCCCCC
Q 029690 65 SKTSVHDFSVKDAK---GQDVDLSI-YKGK-LLLIVNVASQCGLTNSN-YTELSQLYDKYKNQGL-EILAFPCNQFGAQE 137 (189)
Q Consensus 65 ~g~~~p~f~l~d~~---G~~~~l~~-~~gk-~vlv~F~a~~C~~C~~~-~~~l~~l~~~~~~~~v-~vi~vs~d~~~~~~ 137 (189)
+|+.+|+|++.+.+ |+.++|++ ++|| ++|+.|++.|||.|..+ ++.+++.++++.+.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999986 99999999 5887 55555667899999999 9999999999999999 69999999
Q ss_pred CCCHHHHHHHHHhhCCc--ccceecccc
Q 029690 138 PGDNEQIQEFACTRFKA--EFPIFDKVL 163 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~fp~l~d~~ 163 (189)
+.+..++|+ +++++ +||+++|.+
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD~~ 99 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLADGN 99 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEECCC
Confidence 789999998 78887 899999998
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.68 E-value=1.1e-16 Score=116.90 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCC-eeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC
Q 029690 77 AKGQ-DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (189)
Q Consensus 77 ~~G~-~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
++|+ ++++++++||++||+||++||++|+.++|.|++++++++++ ++++++|++|. +.+++++|+ ++++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence 3444 89999999999999999999999999999999999999875 79999999985 678999999 6776
Q ss_pred ccccee
Q 029690 154 AEFPIF 159 (189)
Q Consensus 154 ~~fp~l 159 (189)
.++.+
T Consensus 76 -~~~~~ 80 (132)
T cd02964 76 -PWLAV 80 (132)
T ss_pred -CeEee
Confidence 54443
No 48
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.66 E-value=2.7e-16 Score=114.46 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=63.9
Q ss_pred EeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 029690 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (189)
Q Consensus 74 l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 151 (189)
+.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +++|++|++|. +.++.++++ ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999864 69999999985 567888887 45
Q ss_pred CC
Q 029690 152 FK 153 (189)
Q Consensus 152 ~~ 153 (189)
++
T Consensus 75 ~~ 76 (131)
T cd03009 75 MP 76 (131)
T ss_pred CC
Confidence 43
No 49
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.60 E-value=5.8e-15 Score=101.41 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=60.9
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhc-cCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc--ch
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL--AL 165 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~--~~ 165 (189)
||+++|+||++||++|++++|.|.+++++|+ ++++++|+|++|. +.++.++++ ++.+.+++.+...+ ..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEeeCcchHH
Confidence 7999999999999999999999999999999 5569999999985 789999999 67777777765544 34
Q ss_pred HHHHHH
Q 029690 166 QLYKFY 171 (189)
Q Consensus 166 p~~~~l 171 (189)
.+.+.+
T Consensus 73 ~l~~~~ 78 (95)
T PF13905_consen 73 ELLKKY 78 (95)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 444444
No 50
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.60 E-value=2.5e-15 Score=115.37 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=73.6
Q ss_pred ccCCCcccCeEEeCC----------CCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEE------E
Q 029690 63 SQSKTSVHDFSVKDA----------KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI------L 126 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~----------~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~v------i 126 (189)
..+|+++|..++.|- +.+.++.++++||+.||+|||+||++|+.+.|.|.++ +++|+.+ +
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~ 98 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT 98 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence 447888888877664 4456888899999999999999999999999999999 4456888 9
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHhhCCcccc---eecccc
Q 029690 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFP---IFDKVL 163 (189)
Q Consensus 127 ~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp---~l~d~~ 163 (189)
+||.|+ ...+...-+++|+ ++.+..|| ++.|.+
T Consensus 99 ~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 99 IINADD---AIVGTGMFVKSSA-KKGKKENPWSQVVLDDK 134 (184)
T ss_pred EEECcc---chhhHHHHHHHHH-HHhcccCCcceEEECCc
Confidence 999884 1111234467777 67788999 999887
No 51
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.59 E-value=1.6e-14 Score=110.54 Aligned_cols=93 Identities=23% Similarity=0.407 Sum_probs=80.5
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCc-ccHHHHHHHHHHHHHhccC--CcEEEEEecCCCCCCCCCCH
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~-~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d~~~~~~~~~~ 141 (189)
.....|+|++.|.+|+.+++++++||++||+|..|.|| .|...+..|.+++++++++ +++++.||+| +++|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 45668899999999999999999999999999999999 4999999999999998864 6999999999 678899
Q ss_pred HHHHHHHHhhCCcccceeccc
Q 029690 142 EQIQEFACTRFKAEFPIFDKV 162 (189)
Q Consensus 142 ~~~~~~~~~~~~~~fp~l~d~ 162 (189)
+.+++|+ ++++.+|.-+...
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~ 123 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGS 123 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEE
T ss_pred HHHHHHH-HhcCCCcceeEeC
Confidence 9999999 7889888776543
No 52
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.56 E-value=9e-15 Score=111.76 Aligned_cols=59 Identities=20% Similarity=0.445 Sum_probs=52.6
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+...-|+|++. +|+.+++++++ ||+||++|||+|++++|.|++++++| |+.|++|++|.
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~ 109 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG 109 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC
Confidence 45567888885 99999999997 77899999999999999999999997 49999999983
No 53
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-13 Score=103.49 Aligned_cols=114 Identities=16% Similarity=0.309 Sum_probs=92.7
Q ss_pred cCCCcccCeEEeCC-CCC---eeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCC
Q 029690 64 QSKTSVHDFSVKDA-KGQ---DVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (189)
Q Consensus 64 ~~g~~~p~f~l~d~-~G~---~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~ 138 (189)
.+|+++|+|++... .|+ .++++++.||++|++||. ...+.|..|+..+.+.|++|+++|++||++|+|
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------- 76 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------- 76 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC-------
Confidence 48999999999998 775 899999999999999996 688899999999999999999999999999999
Q ss_pred CCHHHHHHHHHh---hCC---cccceecccc--chHHHHHHHhcCCCCcccccceEee
Q 029690 139 GDNEQIQEFACT---RFK---AEFPIFDKVL--ALQLYKFYKQKIHSHGFAYACRILI 188 (189)
Q Consensus 139 ~~~~~~~~~~~~---~~~---~~fp~l~d~~--~~p~~~~l~~~~~~~g~~~~~~~~~ 188 (189)
+.....+|... ..| ++||++.|.+ ....|..+ .+..|.+..++.||
T Consensus 77 -s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl---~~~~g~a~R~~FII 130 (194)
T COG0450 77 -SVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVL---HPEEGLALRGTFII 130 (194)
T ss_pred -cHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCc---ccCCCcceeEEEEE
Confidence 67777777633 466 6899999998 44445554 34456555555443
No 54
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.40 E-value=4.7e-12 Score=99.38 Aligned_cols=86 Identities=21% Similarity=0.377 Sum_probs=76.5
Q ss_pred CeEEeCCCCCeeecCccCCCEEEEEEecCCCc-ccHHHHHHHHHHHHHhc---cCCcEEEEEecCCCCCCCCCCHHHHHH
Q 029690 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYK---NQGLEILAFPCNQFGAQEPGDNEQIQE 146 (189)
Q Consensus 71 ~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~-~C~~~~~~l~~l~~~~~---~~~v~vi~vs~d~~~~~~~~~~~~~~~ 146 (189)
+|++.|.+|+.+++.+++||++||+|..|+|| .|..++.+|.++.++.. ..+++++.|++| +++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 59999999999999998 346999999999 68899999999
Q ss_pred HHHh-hCCcccceecc
Q 029690 147 FACT-RFKAEFPIFDK 161 (189)
Q Consensus 147 ~~~~-~~~~~fp~l~d 161 (189)
|. + .....|.-+..
T Consensus 125 Y~-~~~~~~~~~~ltg 139 (207)
T COG1999 125 YA-ELNFDPRWIGLTG 139 (207)
T ss_pred Hh-cccCCCCeeeeeC
Confidence 99 6 45555655544
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.39 E-value=1e-12 Score=91.95 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=49.2
Q ss_pred ccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc-cc
Q 029690 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE-FP 157 (189)
Q Consensus 86 ~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-fp 157 (189)
+.+|+++||+|||+||++|+.++|.|+++++++ .++.++.|+.|. .++...++ +++++. +|
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~--------~~~~~~l~-~~~~V~~~P 73 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE--------NDSTMELC-RREKIIEVP 73 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC--------ChHHHHHH-HHcCCCcCC
Confidence 346899999999999999999999999999999 349999999883 33445666 666764 45
No 56
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-12 Score=95.49 Aligned_cols=108 Identities=17% Similarity=0.312 Sum_probs=90.1
Q ss_pred cccCCCcccCeEEeCCCCCeeecCccCCC-EEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC
Q 029690 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (189)
Q Consensus 62 ~~~~g~~~p~f~l~d~~G~~~~l~~~~gk-~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~ 139 (189)
..++|+.+|||+|+|.||+.++|.++.|+ ++|++|+. .-.|.|.++.--++.-|++++..+.+|+++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 46699999999999999999999999886 77777775 466789999999999999999989999999998
Q ss_pred CHHHHHHHHHhhCCcccceeccccchHHHHHHH-hcCCCCc
Q 029690 140 DNEQIQEFACTRFKAEFPIFDKVLALQLYKFYK-QKIHSHG 179 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~-~~~~~~g 179 (189)
+...-++|. .++++.|.+++|... .+.+.|. .+.+..|
T Consensus 134 ~s~sqKaF~-sKqnlPYhLLSDpk~-e~ik~lGa~k~p~gg 172 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLLSDPKN-EVIKDLGAPKDPFGG 172 (211)
T ss_pred chHHHHHhh-hhccCCeeeecCcch-hHHHHhCCCCCCCCC
Confidence 677888897 899999999999983 3444443 3334445
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.28 E-value=3.2e-12 Score=94.62 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=48.0
Q ss_pred EeCCCCCeeecCcc--CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 74 VKDAKGQDVDLSIY--KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 74 l~d~~G~~~~l~~~--~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++.+++...+++. +||++||+||++||++|+.+.|.+.+++++|+++ +.|+.|++|
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd 61 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVD 61 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcC
Confidence 44555555555553 6899999999999999999999999999999876 899999988
No 58
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.27 E-value=6.6e-12 Score=94.02 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=40.8
Q ss_pred CCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 79 G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
|+.++++++ .||+|||+|||+|++++|.|++++++| ++.|++|++|.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~ 90 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG 90 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC
Confidence 666766554 499999999999999999999999987 48899999984
No 59
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.25 E-value=1.9e-11 Score=85.33 Aligned_cols=67 Identities=7% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
.|++++|+|||+||++|+.+.|.++++++++++..+.++.++.| ..+.+++|- .+.-.+|-++.+.+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~~~~~~~-v~~~Pt~~~~~~g~ 82 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TIDTLKRYR-GKCEPTFLFYKNGE 82 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHHHHHHcC-CCcCcEEEEEECCE
Confidence 47899999999999999999999999999998766888889877 445555553 33333455666555
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.21 E-value=4.4e-11 Score=88.73 Aligned_cols=80 Identities=18% Similarity=0.334 Sum_probs=70.0
Q ss_pred eEEeCCCCCeeecC-ccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 72 FSVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 72 f~l~d~~G~~~~l~-~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
..+...+|..+..+ .++||+|.++|-|.|||+|+...|.|.++|++.++. .++||-||.|. +.+++..|+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence 66888899888887 679999999999999999999999999999999875 49999999996 889999999
Q ss_pred HhhCCccccee
Q 029690 149 CTRFKAEFPIF 159 (189)
Q Consensus 149 ~~~~~~~fp~l 159 (189)
..+...|..+
T Consensus 88 -~~~~~~W~~i 97 (157)
T KOG2501|consen 88 -LEHHGDWLAI 97 (157)
T ss_pred -HhcCCCeEEe
Confidence 6666776655
No 61
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.19 E-value=3.8e-11 Score=83.66 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=39.7
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++||+++|.|||+||++|+.++|.++++++++++ +.++.|..+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~ 58 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEES 58 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECC
Confidence 357899999999999999999999999999999964 788888654
No 62
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.19 E-value=6.2e-11 Score=84.27 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=40.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.++++||+|||+|||+|+.+.|.|.++.+++++. +.++-|++|.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~ 56 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE 56 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC
Confidence 4679999999999999999999999999999876 8999999883
No 63
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.11 E-value=2.1e-10 Score=81.17 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=40.2
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+|++||.|+|+|||+|+.+-|.|.++.++|++. +.++.|++|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5899999999999999999999999999999776 899999887
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-10 Score=85.41 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.+++|+|+|||+||+||+...|.|+++..+|.++ +.+.-|++|.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~ 103 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE 103 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc
Confidence 3579999999999999999999999999999887 9999999883
No 65
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.08 E-value=3.4e-10 Score=80.23 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=42.0
Q ss_pred ccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 86 ~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
..+|++++|.||++||++|+...|.+.++.+++++.++.+..|++|
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d 66 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG 66 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc
Confidence 3468999999999999999999999999999998767999999887
No 66
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.7e-10 Score=79.47 Aligned_cols=61 Identities=21% Similarity=0.409 Sum_probs=50.1
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc----ccceecccc
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA----EFPIFDKVL 163 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~----~fp~l~d~~ 163 (189)
+|.+||+|+|+|||||+...|.+.+|..+|++ +.|+.|++| . +...+ +++++ +|-++.+.+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-HhcCceEeeEEEEEECCE
Confidence 68999999999999999999999999999998 999999998 2 44444 44444 566776666
No 67
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.05 E-value=2.8e-10 Score=78.95 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=43.7
Q ss_pred CCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 78 ~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++.++..-..+++++|.||++||++|+.+.|.++++.+++++. +.+..|+.|
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~ 59 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCG 59 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCC
Confidence 33333333335689999999999999999999999999999876 999999988
No 68
>PHA02278 thioredoxin-like protein
Probab=99.03 E-value=5.6e-10 Score=78.23 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=38.6
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+++++||+|||+||++|+.+.|.+.++.+++..+ +.++.|++|.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~ 56 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA 56 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc
Confidence 5789999999999999999999999998886544 7889999883
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.01 E-value=9.6e-10 Score=75.36 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=39.7
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+|+++||+||++||++|+...|.++++.+.+++. +.++.|+.|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~ 53 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCD 53 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEecc
Confidence 5789999999999999999999999999999875 888999887
No 70
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.01 E-value=2.1e-09 Score=85.23 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=73.0
Q ss_pred cCeEEeCCCCCeeecCccCCCEEEEEEecCCCc-ccHHHHHHHHHHHHHhccC-C--cEEEEEecCCCCCCCCCCHHHHH
Q 029690 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ-G--LEILAFPCNQFGAQEPGDNEQIQ 145 (189)
Q Consensus 70 p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~-~C~~~~~~l~~l~~~~~~~-~--v~vi~vs~d~~~~~~~~~~~~~~ 145 (189)
=.|+|.|.+|+.++-+++.||++|++|-.|+|| .|..|+..|.++-++..++ | +.-|.|++| +++|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 379999999999999999999999999999999 5999999999999988764 3 335889999 6889999999
Q ss_pred HHHHhhCCccccee
Q 029690 146 EFACTRFKAEFPIF 159 (189)
Q Consensus 146 ~~~~~~~~~~fp~l 159 (189)
+|+ +++....-=|
T Consensus 196 eY~-~eF~pkllGL 208 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGL 208 (280)
T ss_pred HHH-HhcChhhhcc
Confidence 999 6766554433
No 71
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.01 E-value=1e-09 Score=78.18 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=39.8
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++++||.|||+||++|+...|.++++.+++++. +.+..|+.|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW 70 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC
Confidence 4679999999999999999999999999999876 899999887
No 72
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.00 E-value=9.2e-10 Score=77.64 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+|++++|.||++||++|+...|.+.+++++++++++.+..|+.|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 47899999999999999999999999999999777999999887
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.00 E-value=1.5e-09 Score=75.72 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc-cce
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE-FPI 158 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-fp~ 158 (189)
.|+++||.||++||++|+...+.+ .++.+.+++ ++.++.|+++. +......++ ++++++ +|.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~i~~~Pt 75 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFGVFGPPT 75 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcCCCCCCE
Confidence 578999999999999999999887 678888876 59999998763 223345565 566663 553
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-10 Score=93.44 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=41.7
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.+-++|||+||++||++|+..+|.|.++...|+++ +.+.-|++|.
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~ 85 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA 85 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc
Confidence 34569999999999999999999999999999998 9999999994
No 75
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.99 E-value=1.4e-09 Score=81.42 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=41.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+++++||+||++||++|+.+.|.++++.+++++.++.++.|++|.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~ 90 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR 90 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC
Confidence 467999999999999999999999999999987679999999984
No 76
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.97 E-value=1.2e-09 Score=76.42 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=39.5
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.|++++|.||++||++|+...|.++++++++.+. +.++.|+.|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~ 59 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCD 59 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecC
Confidence 4778999999999999999999999999999865 899999887
No 77
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.4e-10 Score=82.62 Aligned_cols=106 Identities=13% Similarity=0.273 Sum_probs=85.9
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCC--EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGK--LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk--~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
..|+.+|+|+..+..| .+.+.++.|. .+|..--+...|.|..|+..+.+++.+|.++|++.|+.|+|++..+.. -.
T Consensus 7 ~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~-Wi 84 (224)
T KOG0854|consen 7 RLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD-WI 84 (224)
T ss_pred cccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH-HH
Confidence 3799999999988777 4889999886 455555677999999999999999999999999999999996543332 35
Q ss_pred HHHHHHHHhhCC--cccceecccc--chHHHHHHH
Q 029690 142 EQIQEFACTRFK--AEFPIFDKVL--ALQLYKFYK 172 (189)
Q Consensus 142 ~~~~~~~~~~~~--~~fp~l~d~~--~~p~~~~l~ 172 (189)
++++.|. +... ++||++.|.+ ...++.+|.
T Consensus 85 ~DIks~~-~~~~~~~~yPIIaD~~rela~~l~MlD 118 (224)
T KOG0854|consen 85 KDIKSYA-KVKNHSVPYPIIADPNRELAFLLNMLD 118 (224)
T ss_pred HHHHHHH-hccCCCCCCCeecCCchhhhhhhcccC
Confidence 7788887 4445 8999999998 666677665
No 78
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.97 E-value=1.7e-09 Score=79.82 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=40.2
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++++||+|||+||++|+...|.|.++.+++++. +.|+-|++|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVD 64 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDIT 64 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECC
Confidence 4679999999999999999999999999999887 888999998
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.95 E-value=4.4e-10 Score=91.64 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=46.7
Q ss_pred CCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 78 ~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.++...+++++|+++||+||++||++|+.+.|.|++++++| |+.|++|++|.
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~ 206 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG 206 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC
Confidence 34557888899999999999999999999999999999987 48999999984
No 80
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.94 E-value=3.7e-09 Score=73.58 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=39.1
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++++|.||++||++|+...|.++++.+++++. +.+..|+.|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~ 60 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ 60 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECC
Confidence 4669999999999999999999999999999765 999999887
No 81
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.93 E-value=1.9e-09 Score=74.65 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+|+ ++|.|||+||++|+...|.++++++.+++.++.+..|+.|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~ 58 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT 58 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc
Confidence 565 6899999999999999999999999887667999999877
No 82
>PRK09381 trxA thioredoxin; Provisional
Probab=98.90 E-value=4e-09 Score=74.07 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=40.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.+++++|.||++|||+|+...|.++++.++++++ +.++.|+.|.
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~ 63 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ 63 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC
Confidence 3679999999999999999999999999999876 9999999883
No 83
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.88 E-value=4.2e-09 Score=73.48 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC--cEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~vs~d 131 (189)
++++++|.||++||++|+.+.|.++++++++++.+ +.+..++.+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 45799999999999999999999999999997643 777777765
No 84
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-08 Score=72.01 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=77.9
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
.++|+.+|+|++.+.+.+.++++++.||..+|..+. -..|.|..+..++++...++.+ ..|+.||+| .+
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------LP 87 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------LP 87 (158)
T ss_pred CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------Ch
Confidence 459999999999999999999999999966666555 4788999999999999998776 899999999 89
Q ss_pred HHHHHHHHhhCCcc-cceecccc
Q 029690 142 EQIQEFACTRFKAE-FPIFDKVL 163 (189)
Q Consensus 142 ~~~~~~~~~~~~~~-fp~l~d~~ 163 (189)
-..++|+ ..+|++ ...++|..
T Consensus 88 FAq~RfC-~aeGi~nv~~lSd~r 109 (158)
T COG2077 88 FAQKRFC-GAEGIENVITLSDFR 109 (158)
T ss_pred hHHhhhh-hhcCcccceEhhhhh
Confidence 9999999 566886 67777765
No 85
>PRK10996 thioredoxin 2; Provisional
Probab=98.84 E-value=6.7e-09 Score=76.54 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=39.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++++|+||++||++|+.+.|.+.++++++.++ +.++.|+.|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~ 93 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTE 93 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCC
Confidence 4789999999999999999999999999998775 999999877
No 86
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.83 E-value=7e-09 Score=74.40 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=40.3
Q ss_pred CCCEEEEEEec-------CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a-------~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+|++++|.||| +|||+|+...|.++++.++++++ +.++.|.+|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCC
Confidence 57899999999 99999999999999999999854 9999999873
No 87
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.82 E-value=7.1e-09 Score=74.25 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=37.2
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
...+||+++|+|||+||++|+.+.|.+.+..+.... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 344689999999999999999999999997776543 2567777777
No 88
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.81 E-value=3.5e-09 Score=73.25 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=46.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC-CcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-cccee
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIF 159 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l 159 (189)
++++++|.||++||++|+...|.++++.+.+++. ++.++.|+.+. +.-..++ +++++ .+|.+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~-~~~~i~~~Pt~ 79 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK---------PEHDALK-EEYNVKGFPTF 79 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC---------CccHHHH-HhCCCccccEE
Confidence 4679999999999999999999999999999742 37777777652 1122344 56677 56643
No 89
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.79 E-value=2.8e-08 Score=71.65 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
.|+.++|+|+++|||+|+...|.|.++.++ . ++.++-|++|.....+..+.+++.++. +++++.
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~-~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~ 85 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ--T-KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIP 85 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh--c-CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCc
Confidence 467889999999999999999999999987 2 377888988842211222345788887 676643
No 90
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.79 E-value=6.6e-09 Score=71.70 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.0
Q ss_pred EEEEEEecCCCcccHHHHHHHHHHHHHhcc--CCcEEEEEecC
Q 029690 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCN 131 (189)
Q Consensus 91 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~--~~v~vi~vs~d 131 (189)
.++|.||++||++|+.+.|.++++++++++ .++.++.|+.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 499999999999999999999999999986 35888888876
No 91
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.79 E-value=1.3e-08 Score=73.27 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=37.0
Q ss_pred CC-CEEEEEEecCCCcccHHHHHHHH---HHHHHhccCCcEEEEEecCC
Q 029690 88 KG-KLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~g-k~vlv~F~a~~C~~C~~~~~~l~---~l~~~~~~~~v~vi~vs~d~ 132 (189)
.| |+++|+||++||++|+.+.+.+. ++.+.+.+ ++.++.|++|.
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~ 59 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG 59 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC
Confidence 57 89999999999999999999885 56666665 48899998873
No 92
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.79 E-value=2.2e-08 Score=71.31 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d 131 (189)
+++++|.||++||++|+.+.|.++++.+++++. .+.+..|+.+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 469999999999999999999999999998752 2777777654
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.77 E-value=2.8e-08 Score=70.51 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|+...|.++++.++|++ +.++-|+.+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence 57999999999999999999999999999864 888888765
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.75 E-value=1.3e-08 Score=71.45 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC-----CcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-----GLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-----~v~vi~vs~d 131 (189)
.+++++|.||++||++|+...|.++++++++++. .+.+..|+.|
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d 65 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD 65 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence 4679999999999999999999999999887531 3788888877
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.73 E-value=4e-08 Score=67.67 Aligned_cols=43 Identities=14% Similarity=0.417 Sum_probs=39.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++++++.||++||+.|+...|.++++.++++++ +.++.|+.|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-v~~~~id~d 54 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA-VHFVEIDID 54 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECC
Confidence 4689999999999999999999999999999864 899999887
No 96
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.73 E-value=5.5e-08 Score=69.18 Aligned_cols=42 Identities=7% Similarity=-0.067 Sum_probs=38.2
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++++|.||++||++|+...|.+.++.+++++ +.++-|++|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 457999999999999999999999999999864 899999887
No 97
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.73 E-value=6.9e-08 Score=66.33 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=40.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++++||.||++||++|+...|.+.++.+++++ ++.++.|+.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~ 58 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD 58 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh
Confidence 368999999999999999999999999999998 5999999876
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.72 E-value=4.1e-08 Score=67.18 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|+.+.+.|+++.+++.. ++.++.|+.+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccc
Confidence 68999999999999999999999999999733 4888888655
No 99
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.71 E-value=3e-08 Score=86.17 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=41.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++||+|||+||++|+.+.|.++++.++|+++++.|+.|++|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 57899999999999999999999999999998878999999988
No 100
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.69 E-value=2.8e-08 Score=68.62 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhcc-CCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~vs~d 131 (189)
.|+.++|.||++||++|+.+.|.++++.+.+++ ..+.+..|+.+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 357999999999999999999999999999987 35888888776
No 101
>PTZ00051 thioredoxin; Provisional
Probab=98.69 E-value=4.5e-08 Score=67.16 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=37.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++++|.||++||++|+...+.++++.+++++ +.++.|+.+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence 467999999999999999999999999998753 888888766
No 102
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.68 E-value=3.8e-08 Score=67.98 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhcc-CCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~vs~d 131 (189)
+++++|.||++||++|+...|.+.++.++++. .++.++.++.+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD 61 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC
Confidence 56899999999999999999999999999983 35888888776
No 103
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.65 E-value=3.2e-08 Score=68.01 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC-cEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG-LEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~-v~vi~vs~d 131 (189)
++++++|.||++||++|+...+.++++.+.+++.+ +.++.+..|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 68899999999999999999999999999998753 888888765
No 104
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.64 E-value=1.6e-07 Score=64.23 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=38.5
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|+...+.++++.++++++ +.++.|..|
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~ 55 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVD 55 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECC
Confidence 569999999999999999999999999998765 999999887
No 105
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.61 E-value=1.6e-07 Score=64.84 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=38.2
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|+...|.+.++.++++++ +.++.++.|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc
Confidence 467999999999999999999999999999875 999999876
No 106
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.57 E-value=1.7e-07 Score=66.24 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=40.3
Q ss_pred CCCEEEEEEecCC--CcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~--C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.|.++||.||++| ||+|+...|.|.++.++|+++ +.++-|+.|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~ 71 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD 71 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC
Confidence 5678999999997 999999999999999999887 8899999883
No 107
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.56 E-value=1.3e-07 Score=74.96 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=37.6
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|+.+.|.++++++++++. +.+..|+.+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~ 93 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT 93 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc
Confidence 578999999999999999999999999999875 888777665
No 108
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.56 E-value=1.5e-07 Score=72.02 Aligned_cols=41 Identities=7% Similarity=0.021 Sum_probs=37.4
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
++++||+||++||++|+...|.|.++.++|+. +.|+-|+++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 35999999999999999999999999999864 899999877
No 109
>PLN02309 5'-adenylylsulfate reductase
Probab=98.55 E-value=1.6e-07 Score=81.60 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=41.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++||.||++||++|+.+.|.+.++.++|.+.++.|+.|+.|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 57899999999999999999999999999998878999999887
No 110
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.9e-07 Score=66.68 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCcccCeEEe---CCCCCeeecCccCCCEEEEEEec-CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCC
Q 029690 65 SKTSVHDFSVK---DAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (189)
Q Consensus 65 ~g~~~p~f~l~---d~~G~~~~l~~~~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~ 140 (189)
+..+.|+|+-+ |-.-+.++|++++||++++.|+. .+.-.|..++-.+-+.+.+|++.|-+|+++|+| |
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S 77 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------S 77 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------c
Confidence 34455777644 33446799999999999999986 466679999999999999999999999999999 5
Q ss_pred HHHHHHHH---HhhCCc---ccceecccc--chHHHHHHHhcCCCCcccccceEee
Q 029690 141 NEQIQEFA---CTRFKA---EFPIFDKVL--ALQLYKFYKQKIHSHGFAYACRILI 188 (189)
Q Consensus 141 ~~~~~~~~---~~~~~~---~fp~l~d~~--~~p~~~~l~~~~~~~g~~~~~~~~~ 188 (189)
.....+|. .++.|+ ++|+++|.+ -..-|..| .+..|....+-.||
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL---~~~~G~~lRglfII 130 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVL---KEDEGIALRGLFII 130 (196)
T ss_pred hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCce---ecCCCcceeeeEEE
Confidence 66666665 344455 499999998 33333333 35567666665554
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.50 E-value=4e-07 Score=64.69 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
++.++|.||++|||+|+...|.++++.+++ ++ +.+..|+.|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~-i~~~~vd~d 62 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK-LKLEIYDFD 62 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc-eEEEEEeCC
Confidence 456889999999999999999999999886 33 899999887
No 112
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.46 E-value=6.9e-07 Score=61.28 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=41.7
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
......+++++++.||++|||+|+...|.+.++.+++.. .+.++.++..
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 334444488999999999999999999999999999987 4889999874
No 113
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.46 E-value=6.3e-07 Score=59.29 Aligned_cols=39 Identities=5% Similarity=0.091 Sum_probs=35.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 92 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.|..||++||++|+...+.++++.++++.+ +.++-|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence 477899999999999999999999998765 888989876
No 114
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.6e-07 Score=73.26 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=46.7
Q ss_pred cCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 84 l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
++...||.++|+|.|+||+||++..|.+..+..+|++ ..++-|.+| +.+..+ ..+|++
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a~~gV~ 73 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-ATNGVN 73 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-hhcCcc
Confidence 4444578999999999999999999999999999965 788888766 455555 455664
No 115
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.42 E-value=6.3e-07 Score=60.75 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhc-cCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vi~vs~d 131 (189)
++++++|.||++||++|+...+.++++.+.++ +.++.++.|+.+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 45699999999999999999999999999995 345999999876
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=98.42 E-value=5.1e-07 Score=78.75 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=45.3
Q ss_pred EeCCCCCeeecC-ccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC-CcEEEEEecC
Q 029690 74 VKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCN 131 (189)
Q Consensus 74 l~d~~G~~~~l~-~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~vs~d 131 (189)
++.+.|+.+.-. .-.|+.++|.|||+||++|+.+.|.++++.+.+++. .+.+..|+.+
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~ 418 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence 444556655433 235789999999999999999999999999999864 3777777766
No 117
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.41 E-value=1.1e-06 Score=60.66 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
|+++++.|+++||++|....+.+.++.++|+++ +.++.|+.|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 789999999999999999999999999999977 999999766
No 118
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.40 E-value=7.6e-07 Score=64.01 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=36.9
Q ss_pred CCEEEEEEecCCCcc--cH--HHHHHHHHHHHHh--ccCCcEEEEEecCC
Q 029690 89 GKLLLIVNVASQCGL--TN--SNYTELSQLYDKY--KNQGLEILAFPCNQ 132 (189)
Q Consensus 89 gk~vlv~F~a~~C~~--C~--~~~~~l~~l~~~~--~~~~v~vi~vs~d~ 132 (189)
+.++|++||++||++ |+ ...|.+.++..++ .+ ++.+..|++|.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~ 75 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKK 75 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCC
Confidence 349999999999998 99 7778899999988 54 49999999883
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.39 E-value=6.5e-07 Score=69.50 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=37.3
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++|||+||++||++|+...|.|.+++.+|+. +.|+-|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence 46999999999999999999999999999964 899999865
No 120
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.34 E-value=1.2e-06 Score=78.58 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=43.6
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
...+||+++|+|||+||++|+.+.+.. .++.++++ ++.++.|++++ +.++.++++ +++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~v 532 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYNV 532 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcCC
Confidence 334689999999999999999887764 66777775 38888888763 223445555 56665
No 121
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.31 E-value=2.3e-06 Score=56.72 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=36.8
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++|.||++||++|....+.++++.++ ..++.++.|+.+
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~ 50 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD 50 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC
Confidence 37899999999999999999999999988 445999999887
No 122
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.22 E-value=3.5e-06 Score=55.54 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=30.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
.|.||++|||+|....|.++++.++++.+ +.++-|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998765 7776553
No 123
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.19 E-value=1.2e-06 Score=61.44 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHH---HhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYD---KYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~---~~~~~~v~vi~vs~d 131 (189)
+||++|+.||++|||+|+...+++.+..+ .+++ ++.++.++++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID 49 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC
Confidence 57899999999999999988888886433 3333 4899999887
No 124
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.17 E-value=1.6e-06 Score=74.97 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=39.1
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC--cEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~vs~d 131 (189)
++++++|.|||+||++|+...|.+.++++.+.+.+ +.++.|+.+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 62 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT 62 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC
Confidence 56789999999999999999999999999987655 888888776
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=98.17 E-value=3e-06 Score=66.29 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=35.5
Q ss_pred CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 90 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+.+|++|||+|||+|+.+.+.|.++.++|++ +.++.|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc
Confidence 4689999999999999999999999999965 888888654
No 126
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.16 E-value=1e-05 Score=58.48 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=31.8
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecC
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d 131 (189)
-+||+|+|+|+++||++|+.+.+.. .++.+.+.+ ++.+|-|+.+
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 3689999999999999999877632 345555433 3777766655
No 127
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.06 E-value=7.1e-06 Score=70.97 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=40.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhcc-C-CcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-Q-GLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~-~v~vi~vs~d 131 (189)
.++.+||.||++||++|+...|.++++.+.+++ + ++.++.|+.+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 478999999999999999999999999999997 2 5999999876
No 128
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.05 E-value=1.6e-05 Score=63.13 Aligned_cols=100 Identities=11% Similarity=0.177 Sum_probs=75.3
Q ss_pred cccCCCcccCeEEeCCCCCe-eecCcc-C-CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC------
Q 029690 62 ASQSKTSVHDFSVKDAKGQD-VDLSIY-K-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ------ 132 (189)
Q Consensus 62 ~~~~g~~~p~f~l~d~~G~~-~~l~~~-~-gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~------ 132 (189)
+..+|..+||..+.+.+|+. .++-|+ + ++++|++|-+-.||+=...++.++++.++|++. +.++.|-+..
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG 150 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence 35689999999999999999 999998 4 479999999989999999999999999999986 6677664421
Q ss_pred -------CCCCCCCCHH---HHHHHHHhhCCcccceecccc
Q 029690 133 -------FGAQEPGDNE---QIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 133 -------~~~~~~~~~~---~~~~~~~~~~~~~fp~l~d~~ 163 (189)
...+.+.+.+ .+.+.+ .+....+|++.|.=
T Consensus 151 W~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~vD~m 190 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIVVDTM 190 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEEEEcc
Confidence 0111222332 234444 34457899988876
No 129
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.03 E-value=2.7e-05 Score=51.84 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d 131 (189)
+||+++|+|.+.||++|+..-..+ .++.+.+.++ +..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~-fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN-FVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC-SEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC-EEEEEEEcC
Confidence 589999999999999999988777 4455545544 888888776
No 130
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.02 E-value=2e-05 Score=50.13 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=32.1
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 92 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
-+..|+++|||+|....+.|+++.+.+. ++.+..+++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4788999999999999999999977543 4888888877
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=98.00 E-value=6.3e-06 Score=71.92 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=37.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d 131 (189)
+++.++|.||++||++|++..|.+.++.+.+.+. ++.+..|+.+
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~ 93 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT 93 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 5779999999999999999999999999888754 3777777655
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.97 E-value=2.7e-05 Score=47.22 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=33.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
++.||++||++|....+.+.++ ++.+.++.++.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999998 4555679999999884
No 133
>PHA02125 thioredoxin-like protein
Probab=97.87 E-value=3.1e-05 Score=50.76 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=35.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceeccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDKV 162 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d~ 162 (189)
++.||++||++|+...|.|+++. +.++-|+.|. .. +.+ +++++ .+|.+.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~-------~~----~l~-~~~~v~~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDE-------GV----ELT-AKHHIRSLPTLVNT 53 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCC-------CH----HHH-HHcCCceeCeEECC
Confidence 78999999999999999887542 4556665541 22 334 56676 57877654
No 134
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.87 E-value=4.2e-05 Score=51.99 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=38.4
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+++++.+.+..|+++||++|....+.++++.+.+++ +.+..+.+|
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 456778889999999999999999999999987653 888888766
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.84 E-value=5e-05 Score=59.84 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=32.9
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+.++++.||++|||+|+...+.++++..++. ++.+.-|..|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 44466777999999999999999988887743 3777777665
No 136
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.83 E-value=8.6e-05 Score=49.08 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=40.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-cccee
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIF 159 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l 159 (189)
|+.|+++|||+|....+.|.++. .+. .+.++-|+.+. +.+++++++.+..+. ++|.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~-------~~~~~~~~l~~~~g~~~vP~v 58 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLS-------NGSEIQDYLEEITGQRTVPNI 58 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCC-------ChHHHHHHHHHHhCCCCCCeE
Confidence 47789999999999999998876 222 27777776552 455666666455565 67765
No 137
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.82 E-value=3.6e-05 Score=60.64 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=33.7
Q ss_pred cCCCEEEEEEec---CCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 87 YKGKLLLIVNVA---SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 87 ~~gk~vlv~F~a---~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++...++.|.+ +|||+|+...|.++++.+++.+ +++..+.+|
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd 62 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFD 62 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecC
Confidence 455566777888 9999999999999999999853 565556655
No 138
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.79 E-value=0.00011 Score=46.86 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=39.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceecccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d~~ 163 (189)
+..|+++|||+|+...+.|++ .++.+..++++. +++..+++. +.++. ..|++....
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~-------~~~~~~~~~-~~~~~~~vP~~~~~~ 58 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK-------DSAAREEVL-KVLGQRGVPVIVIGH 58 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC-------CHHHHHHHH-HHhCCCcccEEEECC
Confidence 467899999999988776654 468888888873 455556665 55565 478776543
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.8e-05 Score=66.42 Aligned_cols=59 Identities=17% Similarity=0.430 Sum_probs=45.3
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-cccee
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIF 159 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l 159 (189)
...++|.|+|+||++|.+..|++.+..+..++.+ +.+.-| |. .++ ..++ .+|++ .||.+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakV--Da--------t~~-~~~~-~~y~v~gyPTl 103 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKV--DA--------TEE-SDLA-SKYEVRGYPTL 103 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEe--ec--------chh-hhhH-hhhcCCCCCeE
Confidence 3588999999999999999999999999999874 555555 42 222 6666 67777 47754
No 140
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.68 E-value=0.00023 Score=56.32 Aligned_cols=99 Identities=9% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC---cEEEEEecCCCCCCCCCCHH
Q 029690 66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 66 g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~---v~vi~vs~d~~~~~~~~~~~ 142 (189)
=+..|.|++.+ .-.+.+.+|+++||.+-..+|..|..+...|+.|..++.+.| |.++.|+-- +. ...
T Consensus 7 C~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-----~~-~s~ 76 (238)
T PF04592_consen 7 CKPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-----GE-HSR 76 (238)
T ss_pred CCCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-----Cc-chh
Confidence 35678888754 346788899999999999999999999999999999998765 677777632 21 222
Q ss_pred HHHHHHHhhCCcccceec-cccchHHHHHHHhc
Q 029690 143 QIQEFACTRFKAEFPIFD-KVLALQLYKFYKQK 174 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~-d~~~~p~~~~l~~~ 174 (189)
.+...++.+...+|||+. |.....+|..|...
T Consensus 77 ~~~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~ 109 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQDENQPDVWELLNGS 109 (238)
T ss_pred HHHHHHHHhCCCCCceecCCccccCHHHHhCCC
Confidence 222344345555699996 55578888888754
No 141
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00021 Score=52.79 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=68.4
Q ss_pred ccCCCcccCeEEeCC------CCC-eeecCcc-CCC-EEEEEEecCCCcccHH-HHHHHHHHHHHhccCCc-EEEEEecC
Q 029690 63 SQSKTSVHDFSVKDA------KGQ-DVDLSIY-KGK-LLLIVNVASQCGLTNS-NYTELSQLYDKYKNQGL-EILAFPCN 131 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~------~G~-~~~l~~~-~gk-~vlv~F~a~~C~~C~~-~~~~l~~l~~~~~~~~v-~vi~vs~d 131 (189)
..+|+.+|..+++.. +|. .++.+++ +|| ++|...-+...|.|.. ++|.+.+++++++.+|+ .++.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 348999999888765 232 3455554 777 5555555678899886 99999999999999986 46677888
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCc--ccceecccc
Q 029690 132 QFGAQEPGDNEQIQEFACTRFKA--EFPIFDKVL 163 (189)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~--~fp~l~d~~ 163 (189)
+.-.+.+|.+ ..|. +.-++.|.+
T Consensus 83 --------D~FVm~AWak-~~g~~~~I~fi~Dg~ 107 (165)
T COG0678 83 --------DAFVMNAWAK-SQGGEGNIKFIPDGN 107 (165)
T ss_pred --------cHHHHHHHHH-hcCCCccEEEecCCC
Confidence 7899999984 4455 467777877
No 142
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00016 Score=61.73 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=47.9
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc-cceecccc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE-FPIFDKVL 163 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-fp~l~d~~ 163 (189)
.+++.+|.||++||++|.+..|.+.++.+.++++ +.+..|..+ +-+..+ +++++. ||.+....
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~-----------~~~~~~-~~y~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD-----------EHKDLC-EKYGIQGFPTLKVFR 109 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch-----------hhHHHH-HhcCCccCcEEEEEc
Confidence 3568999999999999999999999999999885 666666443 444454 666774 67665444
No 143
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00011 Score=64.19 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=35.6
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC-CcEEEEE
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAF 128 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~v 128 (189)
.+|-|||.|+|+||++|.+..|.+++|.++|++. ++.+.-+
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 5788999999999999999999999999999985 4555444
No 144
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.51 E-value=0.00022 Score=56.32 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=42.3
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
-.+.+..+++-|+.|+.+.|++|..+.|.|+.+.++| |+.|+.||+|.
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG 160 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG 160 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence 3455666788899999999999999999999999987 59999999995
No 145
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.42 E-value=0.00062 Score=44.03 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+..||++|||+|++..+.|.++ ++.+-.|+++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 6789999999999988877554 3555567666
No 146
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.38 E-value=0.00037 Score=50.68 Aligned_cols=44 Identities=9% Similarity=0.211 Sum_probs=29.5
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHHH---HHHHHhccCCcEEEEEecC
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l~---~l~~~~~~~~v~vi~vs~d 131 (189)
-+||+++|+|.+.||++|+..-...- ++.+.. ++++.+|.+..|
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~d 67 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVHE 67 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEec
Confidence 36899999999999999998877642 233333 223544455444
No 147
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.32 E-value=0.0016 Score=50.88 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=69.7
Q ss_pred ccCeEEeCCCCCeeecCcc-CCC--EEEEEEe-----cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCC
Q 029690 69 VHDFSVKDAKGQDVDLSIY-KGK--LLLIVNV-----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (189)
Q Consensus 69 ~p~f~l~d~~G~~~~l~~~-~gk--~vlv~F~-----a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~ 140 (189)
-.+..+...+|+ ++|.++ .|+ .+|..|. ..-|+.|......++....-+..+++.++.||-. .
T Consensus 46 ~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra--------P 116 (211)
T PF05988_consen 46 DKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA--------P 116 (211)
T ss_pred CCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC--------C
Confidence 345677778887 888885 676 6666676 4589999999999977778888888999999965 6
Q ss_pred HHHHHHHHHhhCCcccceecccc
Q 029690 141 NEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 141 ~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
.+++..|. ++-|.+||.++...
T Consensus 117 ~~~i~afk-~rmGW~~pw~Ss~g 138 (211)
T PF05988_consen 117 LEKIEAFK-RRMGWTFPWYSSYG 138 (211)
T ss_pred HHHHHHHH-HhcCCCceEEEcCC
Confidence 89999998 78899999998776
No 148
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.23 E-value=0.00012 Score=53.24 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=40.1
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
+....+..++.|..+|||.|....|.|.++.+..+ ++++--+..|. ..+.+.+|. ...+...|.+
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~-------~~el~~~~l-t~g~~~IP~~ 101 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE-------NKELMDQYL-TNGGRSIPTF 101 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH-------HHHHTTTTT-T-SS--SSEE
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC-------ChhHHHHHH-hCCCeecCEE
Confidence 34455688999999999999999999999999865 36666666663 556677776 3434455543
No 149
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.22 E-value=0.0016 Score=45.85 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=30.0
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecC
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d 131 (189)
-++|+++|+|.++||++|....... .++.+.+.++ +.++.++++
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-~v~~~~d~~ 61 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-FIFWQCDID 61 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-EEEEEecCC
Confidence 3689999999999999999876543 3344444443 555555443
No 150
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.20 E-value=0.0007 Score=54.79 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=42.6
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCC
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQF 133 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~ 133 (189)
-.+.++.++.-|++|+.+.||+|..+.|.|+.+.++| |+.|+.||+|..
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~ 191 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGT 191 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence 3455666788899999999999999999999999987 499999999954
No 151
>smart00594 UAS UAS domain.
Probab=97.03 E-value=0.0035 Score=44.87 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=39.7
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-cccee
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIF 159 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l 159 (189)
-.+|.++|+|++.||++|......+ .++.+.+.+ ++.++.++++ +.+ ..+++ ..+++ .||.+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~e-g~~l~-~~~~~~~~P~~ 90 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSE-GQRVS-QFYKLDSFPYV 90 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------Chh-HHHHH-HhcCcCCCCEE
Confidence 3688999999999999999877653 234444433 3666666554 222 24555 56666 46654
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.00 E-value=0.00079 Score=54.21 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=42.2
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCC
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQF 133 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~ 133 (189)
-.+.++.++.-|++|+.+.||+|..+.|.|+.+.++| |+.|+.||+|..
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~ 184 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV 184 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence 3455566778899999999999999999999999986 499999999953
No 153
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.98 E-value=0.0016 Score=46.48 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=40.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc---ccee
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE---FPIF 159 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~---fp~l 159 (189)
+.+.+||.|+|+| |.|.+ .|..++|..+|... .+.+.-|..|+.+ .. +-++.+ ++++++ ||.+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~-----~~-~~~~L~-~~y~I~~~gyPTl 84 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG-----EK-LNMELG-ERYKLDKESYPVI 84 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc-----ch-hhHHHH-HHhCCCcCCCCEE
Confidence 4578999999954 44444 47777777777432 3777777775311 11 225566 789994 9954
No 154
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.95 E-value=0.0032 Score=42.02 Aligned_cols=64 Identities=6% Similarity=0.038 Sum_probs=41.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee-cccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF-DKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l-~d~~ 163 (189)
|..|..+|||+|.+....|+++..++ +|+.+.-++++. +....+++.+.. .....++|.+ .|.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~----~~~~~~el~~~~-~~~~~~vP~ifi~g~ 67 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA----EGISKADLEKTV-GKPVETVPQIFVDQK 67 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC----ChHHHHHHHHHH-CCCCCcCCEEEECCE
Confidence 67788999999999999999998765 357777777762 111234455443 2211477865 4444
No 155
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.80 E-value=0.0068 Score=38.27 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=35.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceecccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFDKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~d~~ 163 (189)
++.|.++|||+|......|.+ .++.+..+++|. +.+..+.+. +..+ ..+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~-------~~~~~~~~~-~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDE-------DPEALEELK-KLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCC-------CHHHHHHHH-HHcCCcccCEEEECC
Confidence 567888999999986665554 357777777773 333334443 3323 4788876554
No 156
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.76 E-value=0.0039 Score=44.69 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCEEEEEEecC-------CCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVAS-------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~-------~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.|+.++|.|.++ |||.|++..|.+++.....++ +..+|-|.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 567888888865 999999999999998888554 5888888774
No 157
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.00037 Score=61.45 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=44.4
Q ss_pred CEEEEEEecCCCcccHHHHHHHHHHHHHhcc-CC-cEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc-ccee
Q 029690 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QG-LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE-FPIF 159 (189)
Q Consensus 90 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~-v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-fp~l 159 (189)
+.-+|.|+++|||.|++..|.++++.+...+ ++ |.|.+|+.- .++-.+.+ ++++++ ||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lC-Ref~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLC-REFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhH-hhcCCCCCcee
Confidence 3679999999999999999999999988765 22 666666543 23334455 788885 6765
No 158
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0052 Score=45.75 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=65.7
Q ss_pred cCCCcccC--eE-EeCC----CCCeeecCcc-CCC-EEEEEEecCCCcc-cHHHHHHHHHHHHHhccCCcE-EEEEecCC
Q 029690 64 QSKTSVHD--FS-VKDA----KGQDVDLSIY-KGK-LLLIVNVASQCGL-TNSNYTELSQLYDKYKNQGLE-ILAFPCNQ 132 (189)
Q Consensus 64 ~~g~~~p~--f~-l~d~----~G~~~~l~~~-~gk-~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~~v~-vi~vs~d~ 132 (189)
.+|+.+|+ .+ +.|. .|.+++++++ +|| ++|.-.-+...|. |..+.|-+.+-.++++.+|+. |+.||+|
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn- 88 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN- 88 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC-
Confidence 47899998 44 2222 2337888886 786 4444444567787 678899999999999999865 5778888
Q ss_pred CCCCCCCCHHHHHHHHHhhCCcc--cceecccc
Q 029690 133 FGAQEPGDNEQIQEFACTRFKAE--FPIFDKVL 163 (189)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~--fp~l~d~~ 163 (189)
++-.++.|. +.++.+ .-++.|.+
T Consensus 89 -------DpFv~~aW~-k~~g~~~~V~f~aD~~ 113 (171)
T KOG0541|consen 89 -------DPFVMKAWA-KSLGANDHVKFVADPA 113 (171)
T ss_pred -------cHHHHHHHH-hhcCccceEEEEecCC
Confidence 799999998 777774 34566665
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.55 E-value=0.013 Score=38.26 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=36.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceecc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDK 161 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d 161 (189)
|+.|..+|||+|....+.|+++.- .+.++-|+.+. ..++++..+++..|. ++|.+..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~-------~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE-------DGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC-------ChHHHHHHHHHHhCCCCCCeEEE
Confidence 467778999999988877776543 25666666552 335555555344455 7887533
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.53 E-value=0.0048 Score=44.98 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.++++|+.|+..+||+|....+.+.++..++++ +.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 467999999999999999999999998887754 55554433
No 161
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.51 E-value=0.0064 Score=42.84 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=41.6
Q ss_pred HHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceeccccchHHHHHHH
Q 029690 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 111 l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~ 172 (189)
|.+...++.+.|+.++.|... +.+.+++|+ +..+.++|+++|.+ ..+|+.|.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~-~~lY~~lg 53 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPE-RKLYKALG 53 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCc-HHHHHHhC
Confidence 556677777789999999977 676799999 78899999999997 55555554
No 162
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0084 Score=42.69 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=34.4
Q ss_pred CCCEEEEEEecC--------CCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVAS--------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~--------~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+|+-+.|.|.++ |||.|.+..|-+++..+..+.+ +.+|-|-+-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~-~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED-VHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc-eEEEEEEec
Confidence 455677777764 9999999999999988866655 888888765
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.34 E-value=0.013 Score=36.28 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=34.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceec
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFD 160 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~ 160 (189)
++.|+.+|||.|......| .+.|+.+-.++++. +++..+.+. +..| .++|.+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~-------~~~~~~~l~-~~~g~~~~P~v~ 54 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDE-------DEEAREELK-ELSGVRTVPQVF 54 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGG-------SHHHHHHHH-HHHSSSSSSEEE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEccccc-------chhHHHHHH-HHcCCCccCEEE
Confidence 5678899999999766666 34567888888773 333333333 4434 5788753
No 164
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.34 E-value=0.0071 Score=49.83 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccC----CcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ----GLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~----~v~vi~vs~d 131 (189)
...|+|+|+|.||+.++...|.+.+.+++++++ .+..-.|..|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd 59 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD 59 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc
Confidence 458999999999999999999999888777643 2444444444
No 165
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.33 E-value=0.014 Score=43.06 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=40.6
Q ss_pred CeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHh--ccCCcEEEEEecC
Q 029690 80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY--KNQGLEILAFPCN 131 (189)
Q Consensus 80 ~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~--~~~~v~vi~vs~d 131 (189)
..+.+.+-.++++|+.|+...||+|.+..+.+.++.+++ +++ +.++-..+.
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~-v~~~~~~~~ 55 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGK-VKFVFRPVP 55 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTT-EEEEEEESS
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCc-eEEEEEEcc
Confidence 345566667789999999999999999999999999999 444 888888764
No 166
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.25 E-value=0.013 Score=36.63 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=34.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceeccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFDKV 162 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~d~ 162 (189)
++.|..+|||+|+.....|.+. ++.+.-++++. ..+ .++.+.+..+ .++|++...
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~-------~~~-~~~~l~~~~~~~~~P~~~~~ 57 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILE-------DGE-LREELKELSGWPTVPQIFIN 57 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCC-------CHH-HHHHHHHHhCCCCcCEEEEC
Confidence 5677889999999877777644 36666676662 233 4444434445 478876443
No 167
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.25 E-value=0.028 Score=37.59 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=42.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC---ccccee-cccc----c
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK---AEFPIF-DKVL----A 164 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~---~~fp~l-~d~~----~ 164 (189)
|+.|..+|||+|.+....|+++..++. ++.+.-++++. +..+.+.+. +..| .+.|.+ .|.+ .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~-------~~~~~~~l~-~~~g~~~~tVP~ifi~g~~igG~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHA-------EGISKADLE-KTVGKPVETVPQIFVDEKHVGGC 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCC-------CHHHHHHHH-HHhCCCCCCcCeEEECCEEecCH
Confidence 566778999999988888877654432 35666666652 111122232 3334 578876 3333 5
Q ss_pred hHHHHHHHh
Q 029690 165 LQLYKFYKQ 173 (189)
Q Consensus 165 ~p~~~~l~~ 173 (189)
..+..+++.
T Consensus 72 ~dl~~~~~~ 80 (86)
T TIGR02183 72 TDFEQLVKE 80 (86)
T ss_pred HHHHHHHHh
Confidence 566666554
No 168
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.18 E-value=0.0057 Score=54.40 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=41.7
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHH-HHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC---cccceecccc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELS-QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK---AEFPIFDKVL 163 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~-~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~---~~fp~l~d~~ 163 (189)
++|+|+++|+|.||-.|+..-+..- +.+...+-.|+..+-+++-. +..+.++.+ ++++ +..-++.+.+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lL-k~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALL-KRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHH-HHcCCCCCCEEEEECCC
Confidence 4569999999999999997665443 44444555557776665532 334445555 3444 3444555544
No 169
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.02 E-value=0.04 Score=35.35 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=35.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc--ccceecc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA--EFPIFDK 161 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~--~fp~l~d 161 (189)
+..|..+|||+|......|++ .|+.+-.++++. +++..+++. +..+. .+|.+.-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~-------~~~~~~~~~-~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG-------DPALREEMI-NRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCC-------CHHHHHHHH-HHhCCCCccCEEEE
Confidence 567788999999976666654 457777777763 345555554 44443 6887643
No 170
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.93 E-value=0.0027 Score=52.18 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=30.1
Q ss_pred CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEE
Q 029690 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125 (189)
Q Consensus 90 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~v 125 (189)
...+|+|+|+||++|++.-|..+++-.++++-|+.+
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 488999999999999999999888887777655443
No 171
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.93 E-value=0.05 Score=35.42 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=33.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhC-Ccccceec
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF-KAEFPIFD 160 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~-~~~fp~l~ 160 (189)
|..|+.+|||+|......|++ .|+.+-.++++. +++..+++. +.. ..++|.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~-------~~~~~~~~~-~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDG-------DPALRDEMM-QRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecC-------CHHHHHHHH-HHhCCCCcCEEE
Confidence 356788999999977777754 345565666653 344555554 332 45678753
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.84 E-value=0.052 Score=35.61 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=35.9
Q ss_pred CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceeccc
Q 029690 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFDKV 162 (189)
Q Consensus 90 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~d~ 162 (189)
+.-|+.|..+|||+|.+....|++ .|+.+..++++. .++...+. +..| .++|++...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~--------~~~~~~~~-~~~g~~~vP~i~i~ 64 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGN--------DARGRSLR-AVTGATTVPQVFIG 64 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECCC--------ChHHHHHH-HHHCCCCcCeEEEC
Confidence 344677889999999977777753 457777777762 12223343 3334 578876443
No 173
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.60 E-value=0.056 Score=35.86 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=36.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
+..|..+|||+|......|. ++|+.+-.++++. +++... .+.....-..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~~-------~~~~~~-~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVDR-------VPEAAE-TLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECCC-------CHHHHH-HHHHcCCCCcCEEEECC
Confidence 55677899999997666663 3678888888873 333333 33233234788876555
No 174
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.36 E-value=0.034 Score=41.73 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=36.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.++++|+.|+...||+|...-+.+.++.++++++ +.+.-+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCCc
Confidence 5789999999999999999999999999998654 777655543
No 175
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.036 Score=47.39 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhcc-CCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~vs~d 131 (189)
....+|.|+++||++|+...|++.++...++. .++.+..+..+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34789999999999999999999999999974 45777777643
No 176
>PHA03050 glutaredoxin; Provisional
Probab=95.20 E-value=0.039 Score=38.75 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=17.2
Q ss_pred EEEEecCCCcccHHHHHHHHHH
Q 029690 93 LIVNVASQCGLTNSNYTELSQL 114 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l 114 (189)
|+.|..+|||+|.+....|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 6778899999999766666544
No 177
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.98 E-value=0.081 Score=33.92 Aligned_cols=52 Identities=12% Similarity=0.235 Sum_probs=34.0
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceecc
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDK 161 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d 161 (189)
..|..++||+|+.....|++ +|+.+-.++++. +++. .+.+ ++.|. ..|++..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~-------~~~~-~~~~-~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDE-------QPEA-IDYV-KAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCC-------CHHH-HHHH-HHcCCcccCEEEE
Confidence 45677999999987777753 467777777773 3333 3344 23454 7888755
No 178
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.15 Score=40.21 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=63.4
Q ss_pred CeEEeCCCCCeeecCcc-CCC--EEEEEEe-----cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHH
Q 029690 71 DFSVKDAKGQDVDLSIY-KGK--LLLIVNV-----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (189)
Q Consensus 71 ~f~l~d~~G~~~~l~~~-~gk--~vlv~F~-----a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~ 142 (189)
+..+...+| ..+|.++ .|+ .+|..|. ..-||.|......+......+...++.++.||-- ..+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHH
Confidence 334445566 5778775 666 5555553 3479999999999977777777888999999854 579
Q ss_pred HHHHHHHhhCCcccceecccc
Q 029690 143 QIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 143 ~~~~~~~~~~~~~fp~l~d~~ 163 (189)
++..|- ++.|.+||.+++.+
T Consensus 125 ~l~~~k-~rmGW~f~w~Ss~~ 144 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVSSTD 144 (247)
T ss_pred HHHHHH-HhcCCcceeEeccC
Confidence 999997 78899999998877
No 179
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.14 Score=33.92 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=37.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhC--Ccccceecccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF--KAEFPIFDKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~--~~~fp~l~d~~ 163 (189)
++.|--++||+|.+....|. .+|+.+.-|.++. ++.++.++++ ++. ..++|.+...+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~-~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMV-KRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHH-HHhCCCCCcCEEEECC
Confidence 45566789999997766665 4567777766662 1345777777 443 35788765554
No 180
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.69 E-value=0.21 Score=31.92 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
++.|..+|||.|++...-|++ .|+.+-.++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 455667999999977776664 45777777776
No 181
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.35 E-value=0.25 Score=31.45 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
++.|..+|||+|.+....|++ .|+.+..++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 566778999999987666653 35777777776
No 182
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.28 E-value=0.16 Score=34.86 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCEEEEEEec----CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceecc
Q 029690 89 GKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFDK 161 (189)
Q Consensus 89 gk~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~d 161 (189)
.+.|+|+-.+ +|||+|.+...-|++ .|+.+..+.++. + .++++.+.+..| .++|.+.-
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~-------~-~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE-------D-PEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC-------C-HHHHHHHHHHhCCCCCCEEEE
Confidence 3444554443 799999976666654 346666677652 2 334444433333 37886543
No 183
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=94.21 E-value=0.15 Score=35.06 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=31.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-ccccee
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIF 159 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l 159 (189)
|+.|..+|||+|.+...-|.++ |+.+-.+.+|. .+ ...+.++.+.+..| -++|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~----~~-~~~~~~~~l~~~tg~~tvP~V 65 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDK----EP-AGKDIENALSRLGCSPAVPAV 65 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCC----Cc-cHHHHHHHHHHhcCCCCcCeE
Confidence 6677789999999666655433 35455566652 11 23344444423333 377865
No 184
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.16 E-value=0.28 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.2
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHHHHHH
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~ 113 (189)
+....-.++.+++.|....||+|++..+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 44443457899999999999999999998877
No 185
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.91 E-value=0.33 Score=32.61 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceec
Q 029690 99 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFD 160 (189)
Q Consensus 99 ~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~ 160 (189)
+|||+|......|++. |+.+-.++++. + .++++.+.+..| .++|.+.
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~-------~-~~~~~~l~~~~g~~tvP~vf 68 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILE-------D-EEVRQGLKEYSNWPTFPQLY 68 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCC-------C-HHHHHHHHHHhCCCCCCEEE
Confidence 5999999766666543 46666666652 2 344444434434 3688653
No 186
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.053 Score=42.80 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.7
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+++.+++.||+.||.+|......+..+.+.. ++++++.+..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7789999999999999998887777777776 448888887763
No 187
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.035 Score=43.71 Aligned_cols=55 Identities=18% Similarity=0.032 Sum_probs=43.4
Q ss_pred CCCeeecCccCC--CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 78 KGQDVDLSIYKG--KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 78 ~G~~~~l~~~~g--k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
+++.....--++ +..||.|++.|.|.|+...|-+.++..+|...++.+=.|.+..
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr 187 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR 187 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc
Confidence 444443333333 4789999999999999999999999999999888887776654
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=93.27 E-value=0.37 Score=31.72 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=32.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceec
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFD 160 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~ 160 (189)
+..|..+|||+|.+....|++ +|+.+..+++|. ..+..+.+. +..|. ++|.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~-------~~~~~~~l~-~~~g~~~vP~i~ 57 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDG-------DAAKREEMI-KRSGRTTVPQIF 57 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCC-------CHHHHHHHH-HHhCCCCcCEEE
Confidence 445667999999977666653 356666677763 233334444 44444 588773
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.24 E-value=0.2 Score=39.98 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=30.6
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.|+.+|+.|.-..||+|++..+++.++.+ .|+.|.-+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~ 144 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF 144 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence 57899999999999999999988877643 4566665543
No 190
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.92 E-value=0.16 Score=33.37 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=29.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
|+.|+...||.|....+.+.++....+++ +.+.-+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~-~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG-VRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc-EEEEEeccc
Confidence 46788999999999999999987555444 777766655
No 191
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.55 E-value=0.17 Score=39.44 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=33.9
Q ss_pred CCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~d 131 (189)
.|++.|+.|+.-.||+|...-+.+ ..+.+.+++. +.++-+.++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEeccc
Confidence 467889999999999999988766 7777877665 777666554
No 192
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.3 Score=37.60 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=58.4
Q ss_pred eCCCCCeeecCcc-CCC-EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhC
Q 029690 75 KDAKGQDVDLSIY-KGK-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF 152 (189)
Q Consensus 75 ~d~~G~~~~l~~~-~gk-~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~ 152 (189)
.+..|+.+...++ +.+ .+|....-..|-.|+++..+|.++.+-....|+..++|--. +......|. ++.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g--------~~~~~~~f~-~q~ 105 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPG--------SHVQFEDFW-DQT 105 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEecc--------ceeecchhh-ccc
Confidence 5778999999987 333 55555556899999999999999977777789999998632 344555565 444
Q ss_pred Ccccceecccc
Q 029690 153 KAEFPIFDKVL 163 (189)
Q Consensus 153 ~~~fp~l~d~~ 163 (189)
...--++-|.+
T Consensus 106 ~f~gevylD~~ 116 (197)
T KOG4498|consen 106 YFSGEVYLDPH 116 (197)
T ss_pred CcceeEEEcCc
Confidence 44446777776
No 193
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.12 E-value=0.17 Score=38.19 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=18.5
Q ss_pred eecCccCCCEEEEEEecCCCcccHHHHH
Q 029690 82 VDLSIYKGKLLLIVNVASQCGLTNSNYT 109 (189)
Q Consensus 82 ~~l~~~~gk~vlv~F~a~~C~~C~~~~~ 109 (189)
+....-.+|+++|++.++||..|..+..
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 3444446899999999999999997664
No 194
>PRK10824 glutaredoxin-4; Provisional
Probab=91.56 E-value=0.53 Score=33.47 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=33.0
Q ss_pred CCEEEEEEec----CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccce-eccc
Q 029690 89 GKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPI-FDKV 162 (189)
Q Consensus 89 gk~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~-l~d~ 162 (189)
.+.|+|+--+ +|||+|.+...-|+++ |+.+-.+.++. + .+++..+.+..|. ++|- +.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~-------d-~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQ-------N-PDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecC-------C-HHHHHHHHHHhCCCCCCeEEECC
Confidence 3445554443 4999999776666554 24444455552 2 3455555444343 6774 4454
Q ss_pred c
Q 029690 163 L 163 (189)
Q Consensus 163 ~ 163 (189)
+
T Consensus 79 ~ 79 (115)
T PRK10824 79 E 79 (115)
T ss_pred E
Confidence 4
No 195
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.22 E-value=0.57 Score=32.60 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=33.4
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
..|..++|+.|++...-|++ +|+.+--+++. .++.+.+++++++ ++.|
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 45667999999987766653 34555555543 3455899999999 6666
No 196
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=1.1 Score=31.34 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccce
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPI 158 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~ 158 (189)
+|.|--+|||+|.+ ++++..+ .++....+-+|. . ....++++++.+-.| -++|.
T Consensus 16 VVifSKs~C~~c~~----~k~ll~~---~~v~~~vvELD~---~--~~g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHR----AKELLSD---LGVNPKVVELDE---D--EDGSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHH----HHHHHHh---CCCCCEEEEccC---C--CCcHHHHHHHHHhcCCCCCCE
Confidence 56677899999997 3444444 335555566663 1 144588888832221 25664
No 197
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.83 E-value=0.63 Score=32.64 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=33.9
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
.|..++|+.|++...-|++ +|+.+-.+++. .++.+.+++++++ .+.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~~ 51 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGLP 51 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCCC
Confidence 4567899999977766654 45666666654 2344789999998 565653
No 198
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=90.78 E-value=1.1 Score=31.74 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=29.8
Q ss_pred cCCCEEEEEEecC----CCcccHHHH--HHHHHHHHHhccCCcEEEEEecC
Q 029690 87 YKGKLLLIVNVAS----QCGLTNSNY--TELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 87 ~~gk~vlv~F~a~----~C~~C~~~~--~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
-.+|.++|++.++ ||..|+..+ |++.+..+ + ++-+.+.++.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~-~fv~w~~dv~ 61 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T-RMLFWACSVA 61 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c-CEEEEEEecC
Confidence 4689999999999 888898766 55655553 2 3766666665
No 199
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.74 E-value=0.75 Score=32.39 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=40.3
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceeccccchHHHHHH
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLALQLYKFY 171 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l 171 (189)
..|..++|+.|++....|++ +|+.+-.+++. .++.+.+++++++ +..+..+--+... .++.|+-+
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~~~~l~n~-~~~~~k~l 67 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENGVEDIIST-RSKAFKNL 67 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCCHHHHHhc-CcHHHHHc
Confidence 34566899999977666653 45666666654 2345889999999 6665543322222 34555544
No 200
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.61 E-value=0.65 Score=32.79 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~f 156 (189)
.|..++|+.|++...-|++ +|+.+..+++. .++.+.+++.+++ +..|..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 4677899999977766654 45666666665 3445789999998 6777554
No 201
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.59 E-value=0.71 Score=31.82 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=33.0
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
..|..++|+.|++...-|++ +|+.+-.+++. .++.+.++++++. .+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~~ 50 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLGL 50 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcCC
Confidence 45667999999977666654 34555555554 2344789999998 56563
No 202
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.39 E-value=0.6 Score=30.25 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.7
Q ss_pred ecCCCcccHHHHHHHHHHHHHhc
Q 029690 97 VASQCGLTNSNYTELSQLYDKYK 119 (189)
Q Consensus 97 ~a~~C~~C~~~~~~l~~l~~~~~ 119 (189)
.+++||.|......++++.++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC
Confidence 57789999999999998888874
No 203
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.99 E-value=1.1 Score=32.28 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=43.3
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp 157 (189)
..|.+||-|--.|-|.|..+-.-|.++..+..+- ..+..+.+| ++..|. +-+++..|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid-----------eV~~~~-~~~~l~~p 78 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID-----------EVPDFV-KMYELYDP 78 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc-----------hhhhhh-hhhcccCC
Confidence 4579999999999999999999999999988774 445555443 566666 56677655
No 204
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.88 E-value=0.77 Score=33.27 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=34.6
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~f 156 (189)
+..|..++|+.|++...-|+ ++|+.+-.+++. .++.+.+++++++ +..+..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~g~ 53 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIF----SSPLTIDEIKQIL-RMTEDGT 53 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeecc----CChhhHHHHHHHH-HHhcCCH
Confidence 34566789999998665554 345666666654 2344789999998 6665443
No 205
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.63 E-value=0.6 Score=30.70 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=39.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
|+.|....|+.|......|.++... .++.+-.|+++. .++ +. ++|+..-|++.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~--------d~~---l~-~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE--------DPE---LF-EKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT--------THH---HH-HHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC--------CHH---HH-HHhcCCCCEEEEcC
Confidence 5677789999999877777765443 348888888872 333 54 78899999874433
No 206
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.60 E-value=0.57 Score=37.82 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.++.+|+.|.-..||+|++..+++.++.+. + ++++.-+.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~ 155 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILV 155 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEec
Confidence 467899999999999999999998876553 1 266655543
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=1.6 Score=34.55 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=42.6
Q ss_pred EeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 74 l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
-...+|+.+...+..++++++.|.-..||+|.+..+.+.+.+...++..+.+.-+..
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f 125 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPF 125 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeec
Confidence 334566666666666789999999999999999999999987777765444444443
No 208
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.85 E-value=1.3 Score=36.21 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+..|||+||-+.++.|......|..|+.+|+. ++|+-|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 45899999999999999999999999999988 889888765
No 209
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.12 E-value=1.6 Score=31.59 Aligned_cols=51 Identities=4% Similarity=0.081 Sum_probs=34.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
+..|..++|+.|++...-|+ ++|+.+-.+.+. .++.+.++++.++ +..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~----~~~~s~~el~~~l-~~~~~g 52 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIV----SNSMTVDELKSIL-RLTEEG 52 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEee----CCcCCHHHHHHHH-HHcCCC
Confidence 34566789999998665554 335666555554 3355899999999 664444
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=88.12 E-value=1.5 Score=34.41 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCEEEEEEec----CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-ccccee-ccc
Q 029690 89 GKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIF-DKV 162 (189)
Q Consensus 89 gk~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l-~d~ 162 (189)
.++|+|+--+ +|||+|++....|++ .|+.+..+.++. .+++++.+.+..| .++|.+ .+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~--------d~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFE--------DPDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCC--------CHHHHHHHHHHhCCCCCCeEEECC
Confidence 4455554443 689999866555553 356777777762 2445555533333 367754 444
Q ss_pred c
Q 029690 163 L 163 (189)
Q Consensus 163 ~ 163 (189)
+
T Consensus 177 ~ 177 (204)
T PTZ00062 177 E 177 (204)
T ss_pred E
Confidence 4
No 211
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.73 E-value=2.8 Score=29.29 Aligned_cols=59 Identities=12% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
..++++|+=-+|.||.+.....++++.++...++ +.++-+.+- ....+...+++++|+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVK 76 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCC
Confidence 4678888888999999999999999999998876 888888775 3455666666888875
No 212
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.84 E-value=3.8 Score=29.70 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~f 156 (189)
.|..++|+.|++...-|+ ++|+.+--+.+. .++-+.+++++++ +..|..+
T Consensus 4 iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~~ 53 (132)
T PRK13344 4 IYTISSCTSCKKAKTWLN-------AHQLSYKEQNLG----KEPLTKEEILAIL-TKTENGI 53 (132)
T ss_pred EEeCCCCHHHHHHHHHHH-------HcCCCeEEEECC----CCCCCHHHHHHHH-HHhCCCH
Confidence 455689999997554443 345666666654 2345899999999 6766554
No 213
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=83.42 E-value=4 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=44.1
Q ss_pred EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 91 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
-.+..|.-..|+.|...+..+.. .+..+.++.|..+. +.+.++.|+ .+++|+--.+....
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~-------dD~~Ir~WA-~~~~Idp~~V~~~~ 169 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQG-------DDERIRQWA-NRHQIDPAKVRSRQ 169 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCCC-------CHHHHHHHH-HHcCCCHHHeecCe
Confidence 45667777999999988877743 34568888887543 789999999 78888755554444
No 214
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.12 E-value=3.6 Score=37.03 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=30.8
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
++..+-.|.+++||+|......++++....+ ++..-.|...
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~ 516 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVS 516 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECc
Confidence 4455777789999999988888888888765 3666666544
No 215
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=83.02 E-value=6.8 Score=29.47 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCcccCeEEeCC----------CCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHH-hccCCcEEEEE-ecCC
Q 029690 65 SKTSVHDFSVKDA----------KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK-YKNQGLEILAF-PCNQ 132 (189)
Q Consensus 65 ~g~~~p~f~l~d~----------~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~-~~~~~v~vi~v-s~d~ 132 (189)
.|+++|..++.|. ..+.++..++.||+-+|...|.....-...-|-+..+.+. |+....+..+| ++|+
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dD 82 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDD 82 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEeccc
Confidence 5777787777653 3456788888999999988877654444444555556555 66555666554 5553
Q ss_pred CCCCCCCCHHHHHHHHHhhCC--cccc-eecccc
Q 029690 133 FGAQEPGDNEQIQEFACTRFK--AEFP-IFDKVL 163 (189)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~--~~fp-~l~d~~ 163 (189)
. -..+..-++.-+ +... .++. ++.|.+
T Consensus 83 A---i~gt~~fVrss~-e~~kk~~p~s~~vlD~~ 112 (160)
T PF09695_consen 83 A---IWGTGGFVRSSA-EDSKKEFPWSQFVLDSN 112 (160)
T ss_pred c---cccchHHHHHHH-HHhhhhCCCcEEEEcCC
Confidence 1 112344555555 3333 3444 567877
No 216
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=81.39 E-value=6.1 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=35.7
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
..|+++|-|--.|-|.|..+-.-|.+..++.++- ..++.|.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999999999999988775 666667665
No 217
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=80.61 E-value=20 Score=27.08 Aligned_cols=99 Identities=10% Similarity=0.141 Sum_probs=57.5
Q ss_pred cccCeEEeCCCCCeeecCccCC-CEEEEEE----ecCCC-cccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYKG-KLLLIVN----VASQC-GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~g-k~vlv~F----~a~~C-~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
..|..++++..--.+...+++| |.+|++= .++.. ..-..++|.++++...|.++++.+++=|.. ..+.|..
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~D~d 97 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEYDHD 97 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---ccccCCc
Confidence 3455555555555555666556 5555541 11111 124578999999999999887777765543 2333334
Q ss_pred HHHHHHHHhhCCcccceecccc-----chHHHHHH
Q 029690 142 EQIQEFACTRFKAEFPIFDKVL-----ALQLYKFY 171 (189)
Q Consensus 142 ~~~~~~~~~~~~~~fp~l~d~~-----~~p~~~~l 171 (189)
....+.+ +..++.|++.-.. ....+.|+
T Consensus 98 ~s~Ak~l--e~k~gIpVlRHs~kKP~ct~E~~~y~ 130 (190)
T KOG2961|consen 98 DSKAKAL--EAKIGIPVLRHSVKKPACTAEEVEYH 130 (190)
T ss_pred hHHHHHH--HHhhCCceEeecccCCCccHHHHHHH
Confidence 4444444 2367778886555 55555555
No 218
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.64 E-value=5.1 Score=35.64 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=42.6
Q ss_pred ccCCCcccCe--EEeCCCCCeeecCcc--------CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 63 SQSKTSVHDF--SVKDAKGQDVDLSIY--------KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 63 ~~~g~~~p~f--~l~d~~G~~~~l~~~--------~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
...|..+..| .+.+..|....|++- .++.-+-.|...+||+|+.....++++....+ ++..-.|..
T Consensus 80 ~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~ 155 (517)
T PRK15317 80 IPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDG 155 (517)
T ss_pred cCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEc
Confidence 3345555554 223444444444332 34566889999999999998899988888655 377666643
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.57 E-value=4.6 Score=35.04 Aligned_cols=32 Identities=3% Similarity=0.170 Sum_probs=23.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
|+.|..+|||+|.+.-.-|.+ +|+.+-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 667888999999866555543 46777777776
No 220
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=77.90 E-value=4.8 Score=32.60 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCCcccCeEEeCCCCCeeecCc-cCCCEEEEEEecC-CCcccHHHH--HHHHHHHHHhccCCcEEEEEecC
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSI-YKGKLLLIVNVAS-QCGLTNSNY--TELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~-~~gk~vlv~F~a~-~C~~C~~~~--~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
....+|++..++++|+.+++.+ ++||+.||..+.+ |-..|...- |.++++.+.-. ..++++-|++-
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~-~~~q~v~In~~ 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPY-GRVQIVEINLI 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCC-CceEEEEEecc
Confidence 4568999999999999998866 4899776666654 433333222 23332222211 15999999874
No 221
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=77.04 E-value=0.63 Score=37.12 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=29.2
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEE
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~v 125 (189)
.+....--++.|.++|||.|..-.+.+..+..--.+-++.+
T Consensus 35 ~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 35 KELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred hhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeE
Confidence 33333345889999999999999999988766544444443
No 222
>PHA03075 glutaredoxin-like protein; Provisional
Probab=75.44 E-value=2.9 Score=29.73 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCC---CCCHHHHHHHHHhhCCccccee
Q 029690 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE---PGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 90 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~---~~~~~~~~~~~~~~~~~~fp~l 159 (189)
|.++|-|--+.|+.|......|.++.++|.=..+.++++=..+.-... ...-+-+.++. +..|-.+-.+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~-~~lgne~v~l 73 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSKDGQVKVLGMDKGYTLINNFF-KHLGNEYVSL 73 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeeccCCceEEEecccceehHHHHH-HhhcccEEEE
Confidence 568999999999999999999988888875322444433211100000 00334556665 6667666554
No 223
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=73.28 E-value=9 Score=29.15 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccc
Q 029690 106 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 106 ~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp 157 (189)
...|++.++.++.++.|+.++.+|=+ ++..++.++ ++.+++|-
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi 88 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFI 88 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCcee
Confidence 45689999999999999999988754 789999998 77777763
No 224
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=72.46 E-value=16 Score=29.60 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=54.5
Q ss_pred cCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc----chHHHHHHHh
Q 029690 98 ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL----ALQLYKFYKQ 173 (189)
Q Consensus 98 a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~----~~p~~~~l~~ 173 (189)
+..|+- ..-++.+..+|.++|+.+|-|+-++. .+..++-+.+ ......|.+++|.= ...-|+.|++
T Consensus 60 ~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l-~~~~~kFIlf~DDLsFe~~d~~yk~LKs 129 (249)
T PF05673_consen 60 ARGTGK----SSLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLL-RDRPYKFILFCDDLSFEEGDTEYKALKS 129 (249)
T ss_pred CCCCCH----HHHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHH-hcCCCCEEEEecCCCCCCCcHHHHHHHH
Confidence 356663 23467788999999999999986631 2566677776 46678999999965 7888999997
Q ss_pred cCCCCcccccceE
Q 029690 174 KIHSHGFAYACRI 186 (189)
Q Consensus 174 ~~~~~g~~~~~~~ 186 (189)
...+ |+.....+
T Consensus 130 ~LeG-gle~~P~N 141 (249)
T PF05673_consen 130 VLEG-GLEARPDN 141 (249)
T ss_pred HhcC-ccccCCCc
Confidence 6644 34433333
No 225
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=72.19 E-value=7.8 Score=29.09 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 92 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+|..|+..-||+|-...+.|.++.+++++-.+....+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4677888999999999999999999995534666666654
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=71.58 E-value=11 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
.++.-+-.|....||+|+.....++++....+ ++..-.|.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id 155 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMID 155 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEE
Confidence 35566899999999999988888888888766 36655553
No 227
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=8.4 Score=25.28 Aligned_cols=42 Identities=10% Similarity=0.103 Sum_probs=29.8
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHH
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 149 (189)
+-|.+..||.|.....+|+++.=+ ...|-|.. |...+++|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt~---------Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEITE---------SMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehhh---------hhhhHHHHHh
Confidence 568899999999888888766333 34444431 7788888883
No 228
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.78 E-value=9.5 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhcc
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~ 120 (189)
.||+.++..-+-|||.|-.+.=-|--...+|.+
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 589999999999999999888666666677765
No 229
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=69.74 E-value=15 Score=25.85 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=31.4
Q ss_pred EEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc
Q 029690 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 94 v~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
..|..+.|+.|++...-|++ +|+.+-.+.+- .++-+.++++.++ ++.|+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~----~~p~s~~eL~~~l-~~~g~ 51 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA-------AGHEVEVRDLL----TEPWTAETLRPFF-GDLPV 51 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEeehh----cCCCCHHHHHHHH-HHcCH
Confidence 34556899999976655543 34444444432 2344899999999 56553
No 230
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=68.91 E-value=16 Score=25.54 Aligned_cols=49 Identities=10% Similarity=0.271 Sum_probs=33.6
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
.|..+.|+.|++...-|++ .|+.+..+++- .++-+.++++.++ +..|..
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~~ 51 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGLT 51 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCCc
Confidence 4556899999987776654 24555555543 3455899999999 676653
No 231
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=66.82 E-value=30 Score=21.93 Aligned_cols=64 Identities=13% Similarity=0.258 Sum_probs=33.2
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC-cccceeccc--c-----chH
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK-AEFPIFDKV--L-----ALQ 166 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~-~~fp~l~d~--~-----~~p 166 (189)
.+..++||.|.+..-.|.+. |+.+-.+.++. ......++. +..+ -..|++.|. + ...
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~-------~~~~~~~~~-~~~p~~~vP~l~~~~~~~~l~es~~ 68 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL-------ELDVILYPCPK-------GSPKRDKFL-EKGGKVQVPYLVDPNTGVQMFESAD 68 (77)
T ss_pred EecCCCCchHHHHHHHHHHc-------CCcEEEEECCC-------ChHHHHHHH-HhCCCCcccEEEeCCCCeEEEcHHH
Confidence 34457999998665555433 34443344431 222233454 3333 368998763 2 444
Q ss_pred HHHHHHh
Q 029690 167 LYKFYKQ 173 (189)
Q Consensus 167 ~~~~l~~ 173 (189)
...||..
T Consensus 69 I~~yL~~ 75 (77)
T cd03041 69 IVKYLFK 75 (77)
T ss_pred HHHHHHH
Confidence 4555543
No 232
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=66.43 E-value=19 Score=25.56 Aligned_cols=50 Identities=10% Similarity=0.333 Sum_probs=33.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCc--EEEEEecCCCCCCCCCCHHHHHHHHHhhCCccc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGL--EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v--~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~f 156 (189)
+-.|+.+.|..|+....-|++ .|+ +++-+.-+ +-+.+++++++ +..|..+
T Consensus 3 itiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~~~------~~s~~eL~~~l-~~~g~~~ 54 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYLKT------PPSREELKKIL-SKLGDGV 54 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEEeecC------CCCHHHHHHHH-HHcCccH
Confidence 445677899999876665543 344 44444433 44899999999 7777654
No 233
>PRK10853 putative reductase; Provisional
Probab=64.91 E-value=16 Score=25.87 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=33.2
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
.|..+.|..|++.+.-|++ +|+.+-.+.+- .++-+.+++++++ ++.|++
T Consensus 4 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~~ 52 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGWE 52 (118)
T ss_pred EEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCHH
Confidence 4555899999987766653 34555555543 2345899999999 676754
No 234
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=61.51 E-value=25 Score=25.22 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=32.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
+..+.-+.|..|++...-|++ +|+.+-.+.+- .++-+.++++.++ ++.|
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l-~~~g 51 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYF-GNKP 51 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHH-HHcC
Confidence 445566899999987766653 34555555443 2345899999999 5544
No 235
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=61.23 E-value=26 Score=24.38 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=32.5
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
.|..+.|..|++...-|++ +|+.+..+++- .++-+.++++.++ +..|.+
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~~ 51 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGIS 51 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCCC
Confidence 4556899999987655543 34555555442 3445899999999 676744
No 236
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=60.97 E-value=31 Score=25.00 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=34.5
Q ss_pred HHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 113 ~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
++.++++++ +++++++... +.+.+.+.+ +++++.+-.+.|.+
T Consensus 16 dVi~~~~d~-f~v~~Lsa~~-------n~~~L~~q~-~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAGS-------NIEKLAEQA-REFKPKYVVIADEE 57 (129)
T ss_dssp HHHHHCTTT-EEEEEEEESS-------THHHHHHHH-HHHT-SEEEESSHH
T ss_pred HHHHhCCCc-eEEEEEEcCC-------CHHHHHHHH-HHhCCCEEEEcCHH
Confidence 455677776 9999999875 789999998 78899999998887
No 237
>PRK10026 arsenate reductase; Provisional
Probab=60.88 E-value=31 Score=25.35 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=33.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
+..++.+.|..|++...-|++. |+.+-.+++- .++-+.++++.++ ++.|.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~----~~ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYL----ETPPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeee----CCCcCHHHHHHHH-HhCCC
Confidence 3456678999999877766543 3444444432 2344899999999 67665
No 238
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=59.91 E-value=14 Score=27.96 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=26.7
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.|.-+.|+.|-..-|.+.++..+|+.+ +.+--|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEEEc
Confidence 577899999999999999999999987 66655554
No 239
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=59.73 E-value=16 Score=22.72 Aligned_cols=52 Identities=10% Similarity=0.067 Sum_probs=28.0
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceeccc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDKV 162 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d~ 162 (189)
.|...|||.|.+..-.|.+. +-.++.+.|+... ..+ ++. +.+.. ..|++.+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~-------~~~---~~~-~~np~~~vP~L~~~ 55 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVELKN-------KPA---EML-AASPKGTVPVLVLG 55 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCC-------CCH---HHH-HHCCCCCCCEEEEC
Confidence 35578999998765555432 2235555554321 122 343 22233 68988764
No 240
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.40 E-value=13 Score=28.01 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=28.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccC-CcEEEEEecC
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~vs~d 131 (189)
|..|+-..||.|-...+.|.++.++|+.. .+......+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~ 42 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLL 42 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecccc
Confidence 55677789999999999999999998422 2444444443
No 241
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.17 E-value=31 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=31.5
Q ss_pred cCCCEEEEEEecCCCcccHHHHHHH---HHHHHHhccCCcEEEEEec
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~vs~ 130 (189)
-.||+.++.|-...|++|.+.-..+ .++++-+.+. +.++-+..
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i 85 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNI 85 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEe
Confidence 3689999999999999998766544 4566656554 66666654
No 242
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=57.63 E-value=35 Score=23.45 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=36.3
Q ss_pred ecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceeccccchHHHHHHH
Q 029690 97 VASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLALQLYKFYK 172 (189)
Q Consensus 97 ~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~ 172 (189)
.-+.|..|++...-|+ ++|+.+-.+++- .++-+.+++.+++ +..|..+--+...+ ++.|+-+.
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~~lin~~-~~~~k~l~ 64 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELL-SKLGNGPDDLINTR-SKTYKELG 64 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHH-HHHTSSGGGGB-TT-SHHHHHTT
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHHHHhcCc-cchHhhhh
Confidence 3467888887666665 356777777664 3455899999999 77786654443333 45666554
No 243
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=57.37 E-value=37 Score=25.08 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=16.2
Q ss_pred CCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 100 ~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+||+|.+...-|++ .++.+.-++++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999866555543 34666666665
No 244
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=55.56 E-value=44 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCE-EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~-vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.+++ +++.|..............++++.++++++ +.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~ 136 (184)
T PF13848_consen 93 SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD 136 (184)
T ss_dssp TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence 3445 677776555556777888899999999887 888888766
No 245
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=54.95 E-value=89 Score=25.65 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=48.4
Q ss_pred CcccCeEEeCCCCCeeecCccCC-CEEEEEEecCCCcccHHHHHHHHHHHHHhc--cCCcEEEEEecCCCCCCCCCCHHH
Q 029690 67 TSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYK--NQGLEILAFPCNQFGAQEPGDNEQ 143 (189)
Q Consensus 67 ~~~p~f~l~d~~G~~~~l~~~~g-k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~--~~~v~vi~vs~d~~~~~~~~~~~~ 143 (189)
+.+|-|++.|.+|+.+-.+.-.| +.+-+++. .- ..-..-|+++.++-+ +++++|+.|+++ +
T Consensus 80 ~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-~q----edA~afL~~lk~~~p~l~~~~kV~pvsL~-----------~ 143 (270)
T TIGR00995 80 AGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-RQ----EDAEAFLAQLRKRKPEVGSQAKVVPITLD-----------Q 143 (270)
T ss_pred cCCceEEEEcCCCCeEEEECCCCCceEEEEEC-CH----HHHHHHHHHHHhhCccccCCceEEEEEHH-----------H
Confidence 56899999999999877765544 55544322 11 112233444444333 235999999877 2
Q ss_pred HHHHHHhhCCcccceecccc
Q 029690 144 IQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 144 ~~~~~~~~~~~~fp~l~d~~ 163 (189)
+=+.. ..++.|-++-|..
T Consensus 144 vYkl~--~e~l~F~fiP~~~ 161 (270)
T TIGR00995 144 VYKLK--VEGIGFRFLPDPA 161 (270)
T ss_pred HHHHh--hcCccEEEeCCHH
Confidence 33333 3468888887777
No 246
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.65 E-value=66 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.0
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccC-Cc--EEEEEecC
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQ-GL--EILAFPCN 131 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~-~v--~vi~vs~d 131 (189)
|+-.-||.|-...+.|.++.++++.+ ++ +...+.++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 44578999999999999999999631 24 44455444
No 247
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=16 Score=33.66 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=28.7
Q ss_pred cCCCEEEEEEecCCCcccHHHHH------HHHHHHHHhccCCcEEEEEecCC
Q 029690 87 YKGKLLLIVNVASQCGLTNSNYT------ELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 87 ~~gk~vlv~F~a~~C~~C~~~~~------~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
-.+|++++..-++||..|..+.. ++.++.+ + .||.|-+|.
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN---~---~FV~IKVDR 86 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN---E---NFVPVKVDR 86 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH---h---CceeeeECh
Confidence 36899999999999999997653 3444333 2 367777773
No 248
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=54.45 E-value=61 Score=25.33 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=34.1
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCC----CC---CHHHHHHHHHhhCCc
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE----PG---DNEQIQEFACTRFKA 154 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~----~~---~~~~~~~~~~~~~~~ 154 (189)
|.+-.|..|..--.-|.++.++ .+|-.++..+|.+++-. .. ..+.-+.|. +..+.
T Consensus 5 FTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~-~~~~~ 66 (202)
T PF06764_consen 5 FTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYA-RRFGL 66 (202)
T ss_dssp EE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHH-HHTT-
T ss_pred ecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHH-HHhCC
Confidence 4556999999999999999888 35999999998765432 11 224455665 55554
No 249
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=54.13 E-value=45 Score=20.40 Aligned_cols=63 Identities=8% Similarity=0.142 Sum_probs=32.1
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc-----chHHHH
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYK 169 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~-----~~p~~~ 169 (189)
.+..++||.|.+..-.|.+ +|+.+-.+.+|. .. ..++.++.- - .-..|++.+.+ ......
T Consensus 3 ly~~~~~~~~~~v~~~l~~-------~gi~~~~~~v~~----~~-~~~~~~~~~--p-~~~vP~l~~~~~~l~es~aI~~ 67 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE-------KGVSVEIIDVDP----DN-PPEDLAELN--P-YGTVPTLVDRDLVLYESRIIME 67 (73)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCccEEEEcCC----CC-CCHHHHhhC--C-CCCCCEEEECCEEEEcHHHHHH
Confidence 3456789999876655532 344444444442 01 223333321 1 12678887655 444455
Q ss_pred HHH
Q 029690 170 FYK 172 (189)
Q Consensus 170 ~l~ 172 (189)
||.
T Consensus 68 yL~ 70 (73)
T cd03059 68 YLD 70 (73)
T ss_pred HHH
Confidence 554
No 250
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=53.43 E-value=72 Score=23.17 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=31.8
Q ss_pred EEEEEEec--CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 91 LLLIVNVA--SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 91 ~vlv~F~a--~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
..++.|-+ -.+|.+....--|.++.++|.+..+.+.-|++|.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~ 79 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ 79 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 34444443 2778888888899999999975459999999883
No 251
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=50.85 E-value=59 Score=20.34 Aligned_cols=66 Identities=8% Similarity=0.093 Sum_probs=35.3
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc-----chHHHHH
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKF 170 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~-----~~p~~~~ 170 (189)
+...+||.|.+..-.|+ +++-.+++..++... ..++..+. .-.-+.|++.+.. .....+|
T Consensus 2 y~~~~Sp~~~kv~~~l~-----~~~i~~~~~~v~~~~-------~~~~~~~~---~p~~~vPvL~~~g~~l~dS~~I~~y 66 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALE-----EKGIPYELVPVDPEE-------KRPEFLKL---NPKGKVPVLVDDGEVLTDSAAIIEY 66 (75)
T ss_dssp EEETTSHHHHHHHHHHH-----HHTEEEEEEEEBTTS-------TSHHHHHH---STTSBSSEEEETTEEEESHHHHHHH
T ss_pred CCcCCChHHHHHHHHHH-----HcCCeEEEeccCccc-------chhHHHhh---cccccceEEEECCEEEeCHHHHHHH
Confidence 35689999986544443 223224444444221 22333222 2234789987555 6667788
Q ss_pred HHhcCC
Q 029690 171 YKQKIH 176 (189)
Q Consensus 171 l~~~~~ 176 (189)
|....+
T Consensus 67 L~~~~~ 72 (75)
T PF13417_consen 67 LEERYP 72 (75)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 876544
No 252
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=49.61 E-value=16 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.5
Q ss_pred ccCCCcccCeEEeCCCCCeeecCcc
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIY 87 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~ 87 (189)
..+|++..+++++|..|+.++++.-
T Consensus 30 gNvgQP~ENWElkDe~G~vlD~~kK 54 (76)
T PF10790_consen 30 GNVGQPPENWELKDESGQVLDVNKK 54 (76)
T ss_pred cccCCCcccceeeccCCcEeeccch
Confidence 4589999999999999999888653
No 253
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=49.29 E-value=22 Score=19.69 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHhhCCcccceec
Q 029690 138 PGDNEQIQEFACTRFKAEFPIFD 160 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~fp~l~ 160 (189)
.++.+++++|+ +.+|+.+|--.
T Consensus 3 tWs~~~L~~wL-~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWL-KSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHH-HHcCCCCCCCC
Confidence 45889999999 88999887554
No 254
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=46.39 E-value=59 Score=19.74 Aligned_cols=20 Identities=5% Similarity=-0.142 Sum_probs=14.0
Q ss_pred EEecCCCcccHHHHHHHHHH
Q 029690 95 VNVASQCGLTNSNYTELSQL 114 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l 114 (189)
.|..++||.|++..-.|...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 35567899998776666543
No 255
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=45.90 E-value=87 Score=26.14 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=41.4
Q ss_pred eEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 029690 72 FSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (189)
Q Consensus 72 f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 151 (189)
+-+.|+||..++.+.+ .| ....+.|+++ +++|+.|+..+.. +..++..+. ++
T Consensus 3 LIftDLDGTLLd~~~~-----------~~----~~a~~aL~~L----k~~GI~vVlaTGR--------t~~ev~~l~-~~ 54 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-----------SY----GAARQALAAL----ERRSIPLVLYSLR--------TRAQLEHLC-RQ 54 (302)
T ss_pred EEEEeCCCCCcCCCCc-----------CC----HHHHHHHHHH----HHCCCEEEEEcCC--------CHHHHHHHH-HH
Confidence 3467888887765432 11 2233444444 4567999877765 788899988 78
Q ss_pred CCcccceecccc
Q 029690 152 FKAEFPIFDKVL 163 (189)
Q Consensus 152 ~~~~fp~l~d~~ 163 (189)
.+++.|+++..-
T Consensus 55 Lgl~~p~I~eNG 66 (302)
T PRK12702 55 LRLEHPFICEDG 66 (302)
T ss_pred hCCCCeEEEeCC
Confidence 898877665443
No 256
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=45.79 E-value=97 Score=21.27 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=28.2
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhC
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF 152 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~ 152 (189)
.|+ |.+....+.-.+=+++..-+..+++.+-.|.+- +.++.++++.++.
T Consensus 5 vy~-ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa--------~~e~~r~~mr~~~ 53 (99)
T PF04908_consen 5 VYI-SSISGSREIKKRQQRVLMILEAKKIPFEEVDIA--------MDEEARQWMRENA 53 (99)
T ss_dssp EEE--SS-SSHHHHHHHHHHHHHHHHTT--EEEEETT--------T-HHHHHHHHHHT
T ss_pred EEE-ecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCc--------CCHHHHHHHHHhc
Confidence 344 444445555566666666666777888777765 5677788885554
No 257
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=45.20 E-value=67 Score=23.74 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=32.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccc
Q 029690 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (189)
Q Consensus 92 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~f 156 (189)
-++++..+.|+=|......|+ .+|++|=.+..| +.+.+++ ++|+.+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~--------d~~alK~----~~gIp~ 72 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD--------DFLALKR----RLGIPY 72 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC--------cHHHHHH----hcCCCh
Confidence 367778899999987666654 567888888777 4555554 346653
No 258
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=44.77 E-value=65 Score=23.05 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=30.7
Q ss_pred CEEEEEEecC--CCcc-cH-HHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 90 KLLLIVNVAS--QCGL-TN-SNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 90 k~vlv~F~a~--~C~~-C~-~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+.-+|.|... .|.. +. .....|.+++++|+++.+.++-++.+
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~ 66 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAG 66 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCc
Confidence 4667777654 2432 43 44688999999999988899999877
No 259
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.08 E-value=65 Score=29.00 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=31.4
Q ss_pred CccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 85 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.++++.+.|+.|+...|..|.....-|+++. ...++ +.+.....
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~ 405 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNR 405 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEecc
Confidence 4567778899999988999987777777765 44555 66655443
No 260
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=43.88 E-value=65 Score=18.72 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=17.5
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
|...+||.|.+..-.|+.. +-.++++.++.
T Consensus 4 y~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~ 33 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK-----GLPYELVPVDL 33 (71)
T ss_pred EeCCCCccHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 4557899998665555433 22255555543
No 261
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=43.65 E-value=85 Score=23.77 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCcccCeEEeCCCCCeeecCc--c--CC-CEEEEEEecCCCcc-cHHHHHHHHHHHHHhccCCc--EEEEEecCCCCCCC
Q 029690 66 KTSVHDFSVKDAKGQDVDLSI--Y--KG-KLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQGL--EILAFPCNQFGAQE 137 (189)
Q Consensus 66 g~~~p~f~l~d~~G~~~~l~~--~--~g-k~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~~v--~vi~vs~d~~~~~~ 137 (189)
.--.|+..++++.- ++++. + .| |.+++++=.|-+++ -...-|++.+..++.++.+. .|+-|| |..+...
T Consensus 15 ~l~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvS-NsaGs~~ 91 (168)
T PF09419_consen 15 SLLLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVS-NSAGSSD 91 (168)
T ss_pred cccCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEE-CCCCccc
Confidence 34456776666543 23333 3 34 68888887776654 44444666666666665432 355555 3222222
Q ss_pred CCCHHHHHHHHHhhCCcccceecccc-----chHHHHHHH
Q 029690 138 PGDNEQIQEFACTRFKAEFPIFDKVL-----ALQLYKFYK 172 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~fp~l~d~~-----~~p~~~~l~ 172 (189)
..+.++++.+. +..| .|++.-.. .....++++
T Consensus 92 d~~~~~a~~~~-~~lg--Ipvl~h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 92 DPDGERAEALE-KALG--IPVLRHRAKKPGCFREILKYFK 128 (168)
T ss_pred CccHHHHHHHH-HhhC--CcEEEeCCCCCccHHHHHHHHh
Confidence 12456677665 5555 55543222 334555654
No 262
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=42.12 E-value=39 Score=23.11 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.8
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
|+-.+||.|......+.+. +. ...++++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~--~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DR--GGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CC--CCCEEEEECC
Confidence 5678999999998888776 11 2338888773
No 263
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=41.72 E-value=91 Score=24.58 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccc
Q 029690 105 NSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp 157 (189)
....|.+.++.++..++|+.++-.+.. +...++.+. ++++..-|
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR--------~~~~~~~~~-~~~~~~~p 63 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGR--------SPHSYKELQ-KQKPLLTP 63 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCC--------CHHHHHHHH-hcCCCCCC
Confidence 457789999999988899988877755 788888887 67777666
No 264
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=41.27 E-value=57 Score=26.76 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=40.2
Q ss_pred CcccCeEEeCCCCCeeecCccC--CCEEEEEEecCCCcccHHHH-HHHHHHHHHhc--cCCcEEEEEecCCCCCCCCCCH
Q 029690 67 TSVHDFSVKDAKGQDVDLSIYK--GKLLLIVNVASQCGLTNSNY-TELSQLYDKYK--NQGLEILAFPCNQFGAQEPGDN 141 (189)
Q Consensus 67 ~~~p~f~l~d~~G~~~~l~~~~--gk~vlv~F~a~~C~~C~~~~-~~l~~l~~~~~--~~~v~vi~vs~d~~~~~~~~~~ 141 (189)
+.+|-|.+.|.+|+.+-.+.-. ++.+...|+ |..+. ..|+++....+ ..+++|+.|+++ ..
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~--------~v 138 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG--------KV 138 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH--------HH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH--------HH
Confidence 4689999999999987666654 566655554 33333 23445555443 356999999887 22
Q ss_pred HHH-HHHHHhhCCcccceecccc
Q 029690 142 EQI-QEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 142 ~~~-~~~~~~~~~~~fp~l~d~~ 163 (189)
-++ ++.-.+..++.|.++-|..
T Consensus 139 Y~l~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 139 YQLAQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HHHHHHTTT-TT-EEEEEE--HH
T ss_pred HHHHHHhhcCCcCceEEEcCCHH
Confidence 222 2111134566788887766
No 265
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=40.02 E-value=1.3e+02 Score=20.91 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHhc-cCCcEEEEEecC
Q 029690 104 TNSNYTELSQLYDKYK-NQGLEILAFPCN 131 (189)
Q Consensus 104 C~~~~~~l~~l~~~~~-~~~v~vi~vs~d 131 (189)
-......+.+++++|+ ++ +.++.++.+
T Consensus 33 ~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~ 60 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK-LNFAVADKE 60 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe-EEEEEEcHH
Confidence 3456788999999999 57 888888655
No 266
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=38.88 E-value=92 Score=19.01 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=17.1
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+...+||.|.+..-.|. .+|+.+-.+.++
T Consensus 4 y~~~~~p~~~rvr~~L~-------~~gl~~~~~~~~ 32 (71)
T cd03037 4 YIYEHCPFCVKARMIAG-------LKNIPVEQIILQ 32 (71)
T ss_pred EecCCCcHhHHHHHHHH-------HcCCCeEEEECC
Confidence 34578999986555444 234555445555
No 267
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=38.84 E-value=1e+02 Score=21.32 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHH---hccCCcEEEEEecC
Q 029690 104 TNSNYTELSQLYDK---YKNQGLEILAFPCN 131 (189)
Q Consensus 104 C~~~~~~l~~l~~~---~~~~~v~vi~vs~d 131 (189)
-......+.+++++ ++++ +.++.++.+
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~ 58 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA-INFLTADGD 58 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce-EEEEEEech
Confidence 35567888999999 9888 999999876
No 268
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=38.82 E-value=1.7e+02 Score=21.97 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=42.0
Q ss_pred cccCCCcccCeEEeC-CCCCeeecCcc---CCCEEEEEEecCCC-cccHHHHHHHHH-------HHHHhccC------Cc
Q 029690 62 ASQSKTSVHDFSVKD-AKGQDVDLSIY---KGKLLLIVNVASQC-GLTNSNYTELSQ-------LYDKYKNQ------GL 123 (189)
Q Consensus 62 ~~~~g~~~p~f~l~d-~~G~~~~l~~~---~gk~vlv~F~a~~C-~~C~~~~~~l~~-------l~~~~~~~------~v 123 (189)
...+|..+|+.++.. .||+.+.+.+. .|+.-|+.|-+..- +.+..-+..+.+ +..+|..+ -+
T Consensus 29 ~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 29 GLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp TS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred CcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 456999999999965 59999999875 68888888877543 334433444433 33355432 28
Q ss_pred EEEEEecC
Q 029690 124 EILAFPCN 131 (189)
Q Consensus 124 ~vi~vs~d 131 (189)
+++.|...
T Consensus 109 ~~~~I~~~ 116 (169)
T PF07976_consen 109 DVLLIHSS 116 (169)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 88888754
No 269
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=38.12 E-value=85 Score=23.16 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=48.1
Q ss_pred ccCeEEeCCCCCeeecCcc-CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 029690 69 VHDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEF 147 (189)
Q Consensus 69 ~p~f~l~d~~G~~~~l~~~-~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~ 147 (189)
+-++.+.+..|..+++++. +...-++...|+--.+=...+..+..+++-+++..+-+.++.+. ++.+++.
T Consensus 37 Le~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~---------~~~i~~L 107 (142)
T PF07801_consen 37 LEDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLS---------EEQIKKL 107 (142)
T ss_pred HhhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCC---------HHHHHHH
Confidence 4567788888999999885 33333333345555556667777888888888877888877664 5566655
Q ss_pred H
Q 029690 148 A 148 (189)
Q Consensus 148 ~ 148 (189)
-
T Consensus 108 ~ 108 (142)
T PF07801_consen 108 K 108 (142)
T ss_pred H
Confidence 3
No 270
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=37.73 E-value=1.2e+02 Score=24.29 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHhccCCcEE-EEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 104 TNSNYTELSQLYDKYKNQGLEI-LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 104 C~~~~~~l~~l~~~~~~~~v~v-i~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
......+++++.++|+++ ++| +|+-+|.+ ++..+.+++++ ++++++|.+.
T Consensus 58 ~~~Y~~~i~~l~~~y~~~-i~I~~GiE~~~~----~~~~~~~~~~l-~~~~~D~vig 108 (253)
T TIGR01856 58 LPEYFKEINRLKKEYADK-LKILIGLEVDYI----PGFEDFTKDFL-DEYGLDFVIG 108 (253)
T ss_pred HHHHHHHHHHHHHHhhCC-CeEEEEEEeccc----cchHHHHHHHH-HHCCCCeEEE
Confidence 344566778888888875 766 78888743 34678888888 7777777665
No 271
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=37.65 E-value=1.1e+02 Score=19.36 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=20.6
Q ss_pred CCCeeecCccCCCEEEEEEecCCCcccHHHHHHH
Q 029690 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111 (189)
Q Consensus 78 ~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l 111 (189)
+|..+.+-++++..+.|.|-+. |..|......+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTGA-CSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEESS-CCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEEeC-CCCCCCHHHHH
Confidence 6777778778777777777543 44554333333
No 272
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=37.58 E-value=92 Score=20.84 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc
Q 029690 106 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 106 ~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
...+.+.++.++++++|+.++.+|-. ..+.++.++ ++.++
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~--------~~~~~~~~~-~~~~~ 63 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNK--------SRREVLELL-EELGL 63 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCc--------hHHHHHHHH-HHcCC
Confidence 44556666667777778998888855 577888887 67776
No 273
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=36.59 E-value=1e+02 Score=18.83 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=17.9
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
.|+.++|+.|++-.-.|.+. +-.++++-|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecC
Confidence 35668899998655555433 22255555543
No 274
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=35.43 E-value=1.6e+02 Score=20.69 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=30.9
Q ss_pred cCccCCCE-EEEEEecC-CCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 84 LSIYKGKL-LLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 84 l~~~~gk~-vlv~F~a~-~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
|++++++- +||.|-.+ .-+.=..++..|++-...+.++++.++.+.-+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~ 52 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGD 52 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCC
Confidence 56676652 33333322 34445667777877777888888999988544
No 275
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=35.39 E-value=1.7e+02 Score=21.00 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=40.6
Q ss_pred Ccc-cHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCC---CHHHHHHHHHhhCCc-ccce-ecccc-----chHHHH
Q 029690 101 CGL-TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG---DNEQIQEFACTRFKA-EFPI-FDKVL-----ALQLYK 169 (189)
Q Consensus 101 C~~-C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~---~~~~~~~~~~~~~~~-~fp~-l~d~~-----~~p~~~ 169 (189)
|++ -..++-++....+.++++|+.|.-.++.+ ++. ..+.+++++ ++.|. .+|+ +.|.+ ..|...
T Consensus 18 CG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~----~P~aF~~n~~V~~~L-~~~G~e~LPitlVdGeiv~~G~YPt~e 92 (123)
T PF06953_consen 18 CGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ----NPQAFVENPEVNQLL-QTEGAEALPITLVDGEIVKTGRYPTNE 92 (123)
T ss_dssp SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-----TTHHHHSHHHHHHH-HHH-GGG-SEEEETTEEEEESS---HH
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc----CHHHHHhCHHHHHHH-HHcCcccCCEEEECCEEEEecCCCCHH
Confidence 444 34677888888888999999999998873 222 346788888 55677 4786 46666 445444
Q ss_pred HHH
Q 029690 170 FYK 172 (189)
Q Consensus 170 ~l~ 172 (189)
-|.
T Consensus 93 El~ 95 (123)
T PF06953_consen 93 ELA 95 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 276
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=35.16 E-value=7.6 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=16.8
Q ss_pred CCCcccHHHHHHHHHHHHHhcc
Q 029690 99 SQCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 99 ~~C~~C~~~~~~l~~l~~~~~~ 120 (189)
-+|.||+.-++.|.++.++..+
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 3799999999999998888754
No 277
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=34.47 E-value=1.3e+02 Score=23.06 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=54.2
Q ss_pred HHHHHhhcccchh--hHHHHhhhcchhh--hhhhcCCCCCCCccccccccccccccchhhcccCCCcccCeEEeCC--CC
Q 029690 6 ASRYLLKRNLGIA--TSLILTRHFTSNC--KQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDA--KG 79 (189)
Q Consensus 6 a~~~i~~~~~s~~--~~~ll~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~f~l~d~--~G 79 (189)
..||+.+...|.. +..+.++.+-.+. ....+.-..+++.+-.-.. --++..+.+++++|. +|
T Consensus 58 ~gRfLykYaGsfleEA~~lcfk~~f~~a~~~k~~v~nt~~~~pk~~eID------------clv~n~AyEiKwRdAtTdg 125 (191)
T PF09499_consen 58 KGRFLYKYAGSFLEEATWLCFKKKFGEANSAKKRVKNTIGQRPKTFEID------------CLVNNRAYEIKWRDATTDG 125 (191)
T ss_pred cchhHHHhCCcchHHHHHHHHHHHcCccccceEecccCCCCCCCceEEE------------EeecCceEEEEEEecccCC
Confidence 4577888777765 4455555443333 2222222222222111111 125677788888875 34
Q ss_pred CeeecC-------ccCC-CEEEEEEecCCCcccHHHHHHHHHHHHHhcc
Q 029690 80 QDVDLS-------IYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 80 ~~~~l~-------~~~g-k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~ 120 (189)
.-+.-+ ...| +|+.|.|+.+.-....+....|+.+|....+
T Consensus 126 dhi~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 126 DHITKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred ChhhhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 332221 1135 6999999877655555555677777765443
No 278
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=34.37 E-value=67 Score=19.98 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=11.5
Q ss_pred CHHHHHHHHHhhCCccc
Q 029690 140 DNEQIQEFACTRFKAEF 156 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~f 156 (189)
+...+++|+ +..|++|
T Consensus 46 ~~~~l~~~l-D~~gIt~ 61 (64)
T PF09494_consen 46 DPSKLKEWL-DSQGITF 61 (64)
T ss_pred CHHHHHHHH-HHCCcee
Confidence 567777777 6777765
No 279
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=34.12 E-value=1.7e+02 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 109 ~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
..|.++..+..+.|+.|++|..|. ....+.-| ++.|++
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD~-------g~~N~~~w--~~Lgi~ 233 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSDM-------GSNNISLW--RELGIS 233 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC-------CcchHHHH--HHcCCC
Confidence 445677788888999999999995 45566666 355653
No 280
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=33.98 E-value=1.2e+02 Score=24.00 Aligned_cols=45 Identities=7% Similarity=0.167 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceec
Q 029690 107 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (189)
Q Consensus 107 ~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~ 160 (189)
..+...+..++.+++|+.|+..+-. +...++.++ ++.+++.|+++
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR--------~~~~~~~~~-~~l~~~~~~I~ 65 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGR--------PLPDVLSIL-EELGLDGPLIT 65 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCC--------ChHHHHHHH-HHcCCCccEEE
Confidence 4455555556777788999888755 568888888 78888865543
No 281
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=32.87 E-value=1.1e+02 Score=27.13 Aligned_cols=67 Identities=6% Similarity=0.116 Sum_probs=50.9
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCC
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
-+..+-.+.+.-.+|+.+++.+++|..-+|..-++- ..+...+...+...+++.++||-||-|..+.
T Consensus 272 Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 272 RDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 345566666666678899999999985444443443 5678888889999999999999999998873
No 282
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.57 E-value=73 Score=24.72 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=36.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 93 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
.+.||...|+.-......+.+|..-.+..|+.|+.-.- .+.+.+++..-+++|.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaq--p~~qs~~draLL~d~W 95 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQ--PGEQSPEDRALLKDFW 95 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEec--CCcCCHHHHHHHHHhc
Confidence 35678888887777778888888888888898876542 2334433444566665
No 283
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=32.40 E-value=1.6e+02 Score=20.57 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCC---CCCCCCHHHHHHHHHhhCCc
Q 029690 100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG---AQEPGDNEQIQEFACTRFKA 154 (189)
Q Consensus 100 ~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~---~~~~~~~~~~~~~~~~~~~~ 154 (189)
.|+.-...+..++..+++|+ +++++++.|... ...+.+.++..+++.+.+.+
T Consensus 25 ~~~~~~~~~a~lr~W~er~g---a~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERYG---AEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCCHHHHHHHHHHHHHHhC---EEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47777788888888888875 667777665332 12223678999998655444
No 284
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=31.32 E-value=1.5e+02 Score=19.94 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=35.9
Q ss_pred CCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCc-ccceecccc-----chHHHHHHH
Q 029690 99 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDKVL-----ALQLYKFYK 172 (189)
Q Consensus 99 ~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~-~fp~l~d~~-----~~p~~~~l~ 172 (189)
.+||.|++..-.|.+. +-.++++.|+.+. .++. |. +.+-. ..|++.|.+ ..-...||.
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~-------~p~~---~~-~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKR-------KPED---LK-DLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCC-------CCHH---HH-HhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 5799998777666543 2124444454431 2333 43 22222 589998877 555567776
Q ss_pred hcCCCC
Q 029690 173 QKIHSH 178 (189)
Q Consensus 173 ~~~~~~ 178 (189)
.....+
T Consensus 84 e~~~~~ 89 (91)
T cd03061 84 ETLCPP 89 (91)
T ss_pred HHccCC
Confidence 654443
No 285
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.48 E-value=2.4e+02 Score=22.36 Aligned_cols=70 Identities=6% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceeccccchHHHHHHHhcCCCCc
Q 029690 108 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLALQLYKFYKQKIHSHG 179 (189)
Q Consensus 108 ~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~~~~~~~g 179 (189)
...|+..++.++++|+.|.-+..|+..... .-.+.+.+++ ++++++--.+.+.....+-+.+++-....|
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~-s~~~~L~~~~-~~~~~~~~~~~~P~d~~l~~~l~~~~~~~~ 117 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQ-SFEDALARAL-KQHGIDRLHVMEPGDYRLEQRLESLAQQLG 117 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--S-SHHHHHHHHH-HHH----EEEE--S-HHHHHHHHH----SS
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccc-cHHHHHHHHH-HHcCCCEEEEECCCCHHHHHHHHhhhcccC
Confidence 457788888899999999999988411111 1257888888 777888777777777777777776544333
No 286
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=30.36 E-value=79 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=29.4
Q ss_pred HHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc
Q 029690 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 111 l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
|.+|... +.++.+|.|+-. +...+...+ .+||+.|-++.|.+
T Consensus 24 lk~L~k~--g~~l~~i~i~~~--------~lk~F~k~A-kKyGV~yav~kdk~ 65 (204)
T PF12687_consen 24 LKKLLKQ--GKGLKNIEITDE--------DLKEFKKEA-KKYGVDYAVKKDKS 65 (204)
T ss_pred HHHHHhc--CCCceEEecCHh--------hHHHHHHHH-HHcCCceEEeeccC
Confidence 3444443 445888888533 577777787 78999999998766
No 287
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=30.28 E-value=95 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
+|-+|||..+...-|.|.-....|+++.-+|++ ++||-|.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 466999999999999999999999999999987 6777664
No 288
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=29.82 E-value=1.2e+02 Score=25.62 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=35.6
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.||+|++.|-...=|.+...+..+++...+..-.|+-++++..+
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~~ 200 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQGS 200 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 48999888887666778888888988888877777889888753
No 289
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=29.54 E-value=1.9e+02 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=23.2
Q ss_pred HHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 113 ~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
+..++++++|+.|+..+-. +...+..++ ++.+++-|++
T Consensus 27 ~al~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~i 64 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGN--------VLCFARAAA-KLIGTSGPVI 64 (230)
T ss_pred HHHHHHHHCCCEEEEEcCC--------chHHHHHHH-HHhCCCCcEE
Confidence 3334455577888766644 566677776 6667765543
No 290
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=28.85 E-value=1.6e+02 Score=23.40 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccc
Q 029690 102 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 102 ~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp 157 (189)
+.+...+..|.++.+.-...++.++-++.- +.+.+++.+ ++.++..|
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGR--------s~~~~~~~~-~~~~l~~P 61 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGR--------SLESVLRLL-REYNLPQP 61 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS---------HHHHHHHH-HHCT-EE-
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCC--------CHHHHHHHH-HhCCCCCC
Confidence 567777888888777333445888877755 889999998 67787766
No 291
>PRK06740 histidinol-phosphatase; Validated
Probab=28.63 E-value=2.1e+02 Score=24.03 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhccCCcEE-EEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 106 SNYTELSQLYDKYKNQGLEI-LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 106 ~~~~~l~~l~~~~~~~~v~v-i~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
....+++++.++|++.+++| +|+-+|.+ ++..+.+++++ +.+.++|-+.
T Consensus 123 ~Y~~ei~~LkekY~~~~I~Il~GlE~dy~----~~~~~~~~~~l-~~~~~DyvIg 172 (331)
T PRK06740 123 DFTKAIEEAKERWSKRGVTLKLGIEADYF----IGGEQELQSLL-ALGDFDYVIG 172 (331)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEeccC----CCcHHHHHHHH-hcCCCCEEEE
Confidence 34456777888887544766 88888743 23567788877 6677776654
No 292
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=28.29 E-value=2.2e+02 Score=22.63 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 029690 100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 100 ~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
.||.|++.+..|. .+ +.-+.|-.|++.. .++..++..
T Consensus 20 dcpf~qr~~m~L~---~k--~~~f~vttVd~~~-------kp~~f~~~s 56 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LK--GVPFKVTTVDLSR-------KPEWFLDIS 56 (221)
T ss_pred CChhHHHHHHHHH---Hc--CCCceEEEeecCC-------CcHHHHhhC
Confidence 4777776665554 32 2237777777653 566666654
No 293
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=28.22 E-value=1.7e+02 Score=18.89 Aligned_cols=37 Identities=3% Similarity=0.146 Sum_probs=27.2
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
.+++||-|+..+|+ .....+.++++.+++. +.+..++
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~~ 53 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHTS 53 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEEC
Confidence 46888899988887 5667788888888764 6665543
No 294
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=27.48 E-value=1.1e+02 Score=22.41 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 107 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 107 ~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
....|.+|.+++.+.|+.++.+..+ ..+.+.+++ ++++++--+.
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~~V~~ 94 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGD--------PEEVLPELA-KEYGATAVYF 94 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESS--------HHHHHHHHH-HHHTESEEEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecc--------hHHHHHHHH-HhcCcCeeEe
Confidence 3468889999999999999988766 677888887 7778665443
No 295
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.39 E-value=3.2e+02 Score=21.78 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=38.9
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
|..++|-+-+. ..+...+--+.++.++++ .++++++|.+|... ...+.+.+++++ +++|+.+-++
T Consensus 29 ~~kilVa~SGG--~DS~~LL~ll~~l~~~~~-~~~~l~av~vd~g~--~~~~~~~~~~~~-~~lgI~~~v~ 93 (258)
T PRK10696 29 GDRVMVCLSGG--KDSYTLLDILLNLQKRAP-INFELVAVNLDQKQ--PGFPEHVLPEYL-ESLGVPYHIE 93 (258)
T ss_pred CCEEEEEecCC--HHHHHHHHHHHHHHHhCC-CCeEEEEEEecCCC--CCCCHHHHHHHH-HHhCCCEEEE
Confidence 44555555332 234445555555555433 34889999988421 122456678888 8899987664
No 296
>PRK07328 histidinol-phosphatase; Provisional
Probab=27.33 E-value=2.3e+02 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHhccCCcEE-EEEecCCCCCCCCCCHHHHHHHHHhhCCcccceec
Q 029690 104 TNSNYTELSQLYDKYKNQGLEI-LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (189)
Q Consensus 104 C~~~~~~l~~l~~~~~~~~v~v-i~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~ 160 (189)
......+++++.++| + +++| ++|-+|.+ ++..+.+++++ +++.++|.+.+
T Consensus 62 ~~~y~~~i~~l~~~y-~-~i~Il~GiE~~~~----~~~~~~~~~~l-~~~~~D~vigS 112 (269)
T PRK07328 62 LPFYVSEVERLRARF-P-DLYVRLGIEADYH----PGTEEFLERLL-EAYPFDYVIGS 112 (269)
T ss_pred HHHHHHHHHHHHHHc-C-CCeEEEEEEeccc----CCcHHHHHHHH-HhCCCCeEEEE
Confidence 456777888888888 3 3766 78888743 23678888888 67777777663
No 297
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=26.84 E-value=2.3e+02 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcc
Q 029690 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (189)
Q Consensus 111 l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
+.++-++++++|+.++.+|-. +.+.+...+ +++++.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~--------~~~~~~~~l-~~~~~~ 117 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNG--------SRERIERVL-ERLGLD 117 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESS--------EHHHHHHHH-HHTTHG
T ss_pred hhhhhhhcccccceeEEeecC--------Ccccccccc-cccccc
Confidence 444445555567888888754 567777777 677876
No 298
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=26.63 E-value=2e+02 Score=19.24 Aligned_cols=31 Identities=3% Similarity=-0.020 Sum_probs=17.3
Q ss_pred CcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 101 CGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 101 C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
+...++.-.+=+++..-+..+++.+--+.++
T Consensus 9 ~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~ 39 (92)
T cd03030 9 SSGSTEIKKRQQEVLGFLEAKKIEFEEVDIS 39 (92)
T ss_pred ccccHHHHHHHHHHHHHHHHCCCceEEEecC
Confidence 3334444444444444455667887777776
No 299
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=26.10 E-value=1.8e+02 Score=22.77 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEec
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~ 130 (189)
+..-||+.|+-..-..|+.+-..|..|++++-+ ..||-|+.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 456799999998888999999999999998765 56676654
No 300
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=26.07 E-value=2.3e+02 Score=22.48 Aligned_cols=34 Identities=3% Similarity=0.075 Sum_probs=21.5
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccce
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~ 158 (189)
++++++|+.|+..+-. +...++.++ ++.+++.|+
T Consensus 29 ~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~ 62 (272)
T PRK15126 29 ARLRERDITLTFATGR--------HVLEMQHIL-GALSLDAYL 62 (272)
T ss_pred HHHHHCCCEEEEECCC--------CHHHHHHHH-HHcCCCCcE
Confidence 3344567777766543 567777777 677776553
No 301
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.81 E-value=1.2e+02 Score=21.78 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCC
Q 029690 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122 (189)
Q Consensus 65 ~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~ 122 (189)
....-|++...|.+|+..........- ...-....++=....++++++.++|+-.|
T Consensus 72 ~~~~HPeW~~~~~~G~~~~~~~~~~~~--~~~~c~ns~Y~e~~~~~i~Ei~~~y~~DG 127 (132)
T PF14871_consen 72 AAERHPEWFVRDADGRPMRGERFGYPG--WYTCCLNSPYREFLLEQIREILDRYDVDG 127 (132)
T ss_pred HHHhCCceeeECCCCCCcCCCCcCCCC--ceecCCCccHHHHHHHHHHHHHHcCCCCE
Confidence 456789999999999975444433211 11111222344455677778877775444
No 302
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=25.78 E-value=1.7e+02 Score=20.30 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=31.6
Q ss_pred cCCCcccC-eEEeCCCCCeeecCc-----cCCCEEEEEEecCCCcccHHHHHHHHHHHHHhcc
Q 029690 64 QSKTSVHD-FSVKDAKGQDVDLSI-----YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 64 ~~g~~~p~-f~l~d~~G~~~~l~~-----~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~ 120 (189)
.+--.+|+ +++.|..|+=..-++ ...|+++|..- ......+.++++.+.|+.
T Consensus 29 ~VTPRFpdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~-----~~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 29 EVTPRFPDGLTVLDAYGQWRDRATGRLIRERSKVVIIVHP-----DTPAAEARIEAIREAYKQ 86 (104)
T ss_pred eeccCCCCCceEEeccceEecCCCCcEeecccEEEEEEeC-----CChHHHHHHHHHHHHHHH
Confidence 35556777 899999887665222 23455555542 234456677777777765
No 303
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.43 E-value=2.7e+02 Score=22.54 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=42.6
Q ss_pred cccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 029690 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEF 147 (189)
Q Consensus 68 ~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~ 147 (189)
+.|-+-+.|+||..+. ..+ .|-|. ..++.+.++.|+.||-.|.- +..++..+
T Consensus 5 ~~~~lIFtDlD~TLl~-~~y-----------e~~pA--------~pv~~el~d~G~~Vi~~SSK--------T~aE~~~l 56 (274)
T COG3769 5 QMPLLIFTDLDGTLLP-HSY-----------EWQPA--------APVLLELKDAGVPVILCSSK--------TRAEMLYL 56 (274)
T ss_pred ccceEEEEcccCcccC-CCC-----------CCCcc--------chHHHHHHHcCCeEEEeccc--------hHHHHHHH
Confidence 4566778888887665 222 23331 23445556778999998865 77887777
Q ss_pred HHhhCCcc-cceecc
Q 029690 148 ACTRFKAE-FPIFDK 161 (189)
Q Consensus 148 ~~~~~~~~-fp~l~d 161 (189)
- +..++. -|++..
T Consensus 57 ~-~~l~v~~~p~iaE 70 (274)
T COG3769 57 Q-KSLGVQGLPLIAE 70 (274)
T ss_pred H-HhcCCCCCceeec
Confidence 6 787887 666644
No 304
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=25.21 E-value=3.7e+02 Score=24.65 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=46.9
Q ss_pred ccCCCcccCeEEeCCCCCeeecCccCCC--EEEEEEecCCCcccHHHHHHHHHHHHHhc-cCCcEEEEEecCC
Q 029690 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK--LLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQ 132 (189)
Q Consensus 63 ~~~g~~~p~f~l~d~~G~~~~l~~~~gk--~vlv~F~a~~C~~C~~~~~~l~~l~~~~~-~~~v~vi~vs~d~ 132 (189)
..-|.++-..++.|-......-...+++ .++|.|-||.-=.-++.+|.|=+|+..-. .+++.||++.-.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 59 SSNGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred cCCCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 4456666666666543332222233443 78999999987778899999999886432 2469999998764
No 305
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.61 E-value=2.3e+02 Score=22.11 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc-chHHHHHHHhcCCCCcccccc
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL-ALQLYKFYKQKIHSHGFAYAC 184 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~-~~p~~~~l~~~~~~~g~~~~~ 184 (189)
..+...|.+||+|+- .++++....++.-+.--|+.-|-. -.-+++.|....+.+|.-..+
T Consensus 25 ~~La~aGA~ViAvaR---------~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVNNA 85 (245)
T KOG1207|consen 25 LSLAKAGAQVIAVAR---------NEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVNNA 85 (245)
T ss_pred HHHHhcCCEEEEEec---------CHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhccc
Confidence 344456789999975 467888888555454567777766 444556665555556554433
No 306
>PRK12359 flavodoxin FldB; Provisional
Probab=24.59 E-value=2.4e+02 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=13.0
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHH
Q 029690 125 ILAFPCNQFGAQEPGDNEQIQEFA 148 (189)
Q Consensus 125 vi~vs~d~~~~~~~~~~~~~~~~~ 148 (189)
|++..+|. .++..-+.+++++|+
T Consensus 139 f~gl~lD~-~nq~~~t~~ri~~W~ 161 (172)
T PRK12359 139 FVGLALDE-VNQYDLSDERIQQWC 161 (172)
T ss_pred EEEEEEcC-CCchhhhHHHHHHHH
Confidence 66666663 223333667777776
No 307
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=24.25 E-value=2e+02 Score=21.93 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCCcccHHHH-HHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceeccccchHHHHHHHh
Q 029690 99 SQCGLTNSNY-TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVLALQLYKFYKQ 173 (189)
Q Consensus 99 ~~C~~C~~~~-~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~~~p~~~~l~~ 173 (189)
+|.+..-..+ +.=-.+.+....+ +.++.|-+.+-.++ +.-..++++|+ ++++++.-++.-.++...|++|+.
T Consensus 88 SW~v~~fedIt~dSLslF~tlePk-idlLIvG~Gd~~~p-~~v~~~V~~F~-k~~ki~lEi~dte~A~aTfNfLNa 160 (196)
T KOG3363|consen 88 SWSVRTFEDITTDSLSLFQTLEPK-IDLLIVGCGDKKHP-DKVRPSVRQFV-KSHKIKLEIVDTENAAATFNFLNA 160 (196)
T ss_pred eccCCChhhcCcchHhHhhhcCCC-ccEEEEecCCcCCc-hhcCHHHHHHH-HHhCcceEEecchhhhhHhhhccc
Confidence 6777544332 3333555555554 55555544321111 11347899999 899999999977778899999864
No 308
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=24.24 E-value=3.7e+02 Score=25.28 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
++.+++|+.|+..+-. +...+..++ ++.++..|++
T Consensus 443 ~~L~ekGI~~VIATGR--------s~~~i~~l~-~~Lgl~~~~I 477 (694)
T PRK14502 443 RLLKDKELPLVFCSAK--------TMGEQDLYR-NELGIKDPFI 477 (694)
T ss_pred HHHHHcCCeEEEEeCC--------CHHHHHHHH-HHcCCCCeEE
Confidence 4445568888877755 677888887 6777654433
No 309
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=23.87 E-value=2.2e+02 Score=21.14 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=40.9
Q ss_pred cCCCcccCeEEeCCCCCeeecCccCCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEe
Q 029690 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (189)
Q Consensus 64 ~~g~~~p~f~l~d~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs 129 (189)
-++...|.|.....++ +-+.+...+..++.|.-....++.+++.|.+-.++|-.+.
T Consensus 112 ~p~~~~P~f~~~~~~~----------~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~ 167 (171)
T PF07700_consen 112 YPDAKPPSFRCEEEDD----------NELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVE 167 (171)
T ss_dssp STTSS--EEEEEEEET----------TEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCcCCeEEEEECCC----------CEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3677889998877654 3456777788888999999999999999988336665554
No 310
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=23.60 E-value=85 Score=19.51 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=18.2
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.|....||.|++..-.|.+ +|+.+-.+.+|
T Consensus 4 Ly~~~~~p~c~kv~~~L~~-------~gi~y~~~~~~ 33 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDY-------HGIPYEVVEVN 33 (77)
T ss_pred EEEcCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 4555789999976655543 34555445544
No 311
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.52 E-value=1.3e+02 Score=26.79 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=36.6
Q ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 89 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
|||-+|.. .|.-|.......--.++.++| ++.|+.+++++. ..+++...+ ++-=..||+-
T Consensus 180 gKPFvill-Ns~~P~s~et~~L~~eL~ekY---~vpVlpvnc~~l------~~~DI~~Il-~~vLyEFPV~ 239 (492)
T PF09547_consen 180 GKPFVILL-NSTKPYSEETQELAEELEEKY---DVPVLPVNCEQL------REEDITRIL-EEVLYEFPVS 239 (492)
T ss_pred CCCEEEEE-eCCCCCCHHHHHHHHHHHHHh---CCcEEEeehHHc------CHHHHHHHH-HHHHhcCCce
Confidence 78433322 233454444333334455555 488999999853 678888888 6656678864
No 312
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.40 E-value=1.2e+02 Score=22.35 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.0
Q ss_pred EEEEecCCCcccHH-------HHHHHHHHHHHhccCCcEEEEEecC
Q 029690 93 LIVNVASQCGLTNS-------NYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 93 lv~F~a~~C~~C~~-------~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
=|.|-+|-|-.|.. ...+++++.++|...++.|+.=+.|
T Consensus 32 evvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 32 EVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred eEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 45678899998863 4567888999999887777655544
No 313
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=23.36 E-value=1e+02 Score=22.82 Aligned_cols=35 Identities=6% Similarity=-0.073 Sum_probs=26.4
Q ss_pred EecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 96 F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
|+-.-||.|-...+.|+++.++++-. ++...+.++
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~~~-i~~~p~~l~ 38 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHGAT-VRYRPILLG 38 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhCCe-eEEeeeeHH
Confidence 44578999999999999999988533 666666444
No 314
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.22 E-value=1.8e+02 Score=23.81 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc----chHHHHHHHhcCC
Q 029690 110 ELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL----ALQLYKFYKQKIH 176 (189)
Q Consensus 110 ~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~----~~p~~~~l~~~~~ 176 (189)
-++.+..+|.++|+.+|-|+-++. .+...+-+.+ +...-.|.++||.- ..--|+.|++...
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~L-r~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELL-RARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHH-hcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 466788888889999888865421 1233444444 45567899999876 6677888887553
No 315
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=23.15 E-value=69 Score=22.94 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=19.5
Q ss_pred CCEEEEEEecC----CCcccHHHHHHHHH
Q 029690 89 GKLLLIVNVAS----QCGLTNSNYTELSQ 113 (189)
Q Consensus 89 gk~vlv~F~a~----~C~~C~~~~~~l~~ 113 (189)
++-.+..||.. ||-.|-..+.....
T Consensus 57 ~~~~~~AFWn~~e~~wCEdCdddLQ~yhs 85 (120)
T PF06279_consen 57 KKNLMTAFWNECEQRWCEDCDDDLQQYHS 85 (120)
T ss_pred ccccEEEeccccchhhhhcchHHHHHHhh
Confidence 55778899986 99999877766544
No 316
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.01 E-value=1e+02 Score=21.46 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=45.1
Q ss_pred CCCeeecCccCC-CEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCC-CC--CCCCHHHHHHHHHhhCC
Q 029690 78 KGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG-AQ--EPGDNEQIQEFACTRFK 153 (189)
Q Consensus 78 ~G~~~~l~~~~g-k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~-~~--~~~~~~~~~~~~~~~~~ 153 (189)
+.+.-.+++|.+ .+-||-|+. |+.|. -..+....+++.+.|+++|-++.=-.. .+ .=...+++++.+.+++|
T Consensus 24 ~~r~g~F~~y~~~~~elvgf~~--CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 24 NERKGAFARYDDEDVELVGFFT--CGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred HhccCccccCCCCCeEEEEEee--CCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 344556777876 577888854 44443 455666666667778888887652111 00 11247888888855545
Q ss_pred ccccee
Q 029690 154 AEFPIF 159 (189)
Q Consensus 154 ~~fp~l 159 (189)
+ +++
T Consensus 100 i--~VV 103 (107)
T PF08821_consen 100 I--EVV 103 (107)
T ss_pred C--CEe
Confidence 4 554
No 317
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=22.79 E-value=64 Score=19.77 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhhCCcccceeccc
Q 029690 140 DNEQIQEFACTRFKAEFPIFDKV 162 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~fp~l~d~ 162 (189)
+++++++|. ++..-+||.-.-.
T Consensus 19 t~eeI~~W~-eERrk~~PT~~~i 40 (56)
T PF10453_consen 19 TPEEIAKWI-EERRKNYPTKANI 40 (56)
T ss_pred CHHHHHHHH-HHHHHcCCcHHHH
Confidence 899999999 5558889875443
No 318
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=22.69 E-value=4e+02 Score=22.23 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCCCCeeecCcc------CCC--EEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCC
Q 029690 76 DAKGQDVDLSIY------KGK--LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG 134 (189)
Q Consensus 76 d~~G~~~~l~~~------~gk--~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~ 134 (189)
..+|+.++++.. .|. .+||-| ..||.+......+.. .+.+.|++||+|+...|+
T Consensus 13 ~~~~~~~~~~a~y~D~~~~gs~~gTVv~~--hGsPGSH~DFkYi~~---~l~~~~iR~I~iN~PGf~ 74 (297)
T PF06342_consen 13 AENGKIVTVQAVYEDSLPSGSPLGTVVAF--HGSPGSHNDFKYIRP---PLDEAGIRFIGINYPGFG 74 (297)
T ss_pred cccCceEEEEEEEEecCCCCCCceeEEEe--cCCCCCccchhhhhh---HHHHcCeEEEEeCCCCCC
Confidence 345555555331 343 367766 567888777776664 445678999999998765
No 319
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=22.54 E-value=3e+02 Score=20.92 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
++++++|+.|+..+-. +...++.+. ++.+++-|++
T Consensus 28 ~~l~~~g~~~~~~TGR--------~~~~~~~~~-~~l~~~~~~i 62 (215)
T TIGR01487 28 RKAEKKGIPVSLVTGN--------TVPFARALA-VLIGTSGPVV 62 (215)
T ss_pred HHHHHCCCEEEEEcCC--------cchhHHHHH-HHhCCCCcEE
Confidence 3444567777766644 456677776 6777764543
No 320
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.34 E-value=2.9e+02 Score=21.11 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=35.9
Q ss_pred EEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCC----C--------CCHHHHHHHHHhhCCcccc
Q 029690 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE----P--------GDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 95 ~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~----~--------~~~~~~~~~~~~~~~~~fp 157 (189)
.|+..-||.|---...|.++.+.+.-. +....+.++.....+ + ....+++.+. ++.|++|-
T Consensus 5 ~~~D~vcPwcylg~~~l~~~~~~~~v~-i~~~P~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~~~a-~~~Gl~~~ 77 (209)
T cd03021 5 LYYDVVSPYSYLAFEVLCRYQTAWNVD-ITYVPVFLGGIMKDSGNKPPIMLPNKAKYMAKDRKRSA-EFFGVPIR 77 (209)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCe-EEEEeeehhHHHhccCCCCcccCchHHHHHHHHHHHHH-HHhCCCCC
Confidence 344578999999889999887754322 555565554321000 0 0124566676 67788654
No 321
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=22.23 E-value=98 Score=21.40 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.7
Q ss_pred CHHHHHHHHHhhCCcccceecccc
Q 029690 140 DNEQIQEFACTRFKAEFPIFDKVL 163 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~~fp~l~d~~ 163 (189)
+.|+...|+ +++|++|-|.....
T Consensus 57 skE~Ai~ya-er~G~~Y~V~~p~~ 79 (101)
T PF04800_consen 57 SKEDAIAYA-ERNGWDYEVEEPKK 79 (101)
T ss_dssp SHHHHHHHH-HHCT-EEEEE-STT
T ss_pred CHHHHHHHH-HHcCCeEEEeCCCC
Confidence 899999999 89999998886655
No 322
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=4.9e+02 Score=22.00 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=31.6
Q ss_pred eEEeCCCCCeeecCccCCCEEEEEEecC----CCcccHHHHHHHHHHHHHhcc
Q 029690 72 FSVKDAKGQDVDLSIYKGKLLLIVNVAS----QCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 72 f~l~d~~G~~~~l~~~~gk~vlv~F~a~----~C~~C~~~~~~l~~l~~~~~~ 120 (189)
+++.|.+=..+.....+.-.+++.|-|+ .|..|..+..+++-+.+.+..
T Consensus 43 I~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 43 IRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred EEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 3344433333333333444566667665 899999999999999998864
No 323
>PRK10976 putative hydrolase; Provisional
Probab=21.77 E-value=3e+02 Score=21.65 Aligned_cols=34 Identities=3% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccce
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~ 158 (189)
++++++|+.|+..+-. +...++.++ ++.+++.|+
T Consensus 29 ~~l~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~~ 62 (266)
T PRK10976 29 KLLTARGIHFVFATGR--------HHVDVGQIR-DNLEIKSYM 62 (266)
T ss_pred HHHHHCCCEEEEEcCC--------ChHHHHHHH-HhcCCCCeE
Confidence 3445567777766544 556677776 666766553
No 324
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.72 E-value=2.6e+02 Score=20.02 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=25.7
Q ss_pred HHHHHhccCCcEEEEEecCCCCCCC-------CCCHHHHHHHHHhhCCcccc
Q 029690 113 QLYDKYKNQGLEILAFPCNQFGAQE-------PGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 113 ~l~~~~~~~~v~vi~vs~d~~~~~~-------~~~~~~~~~~~~~~~~~~fp 157 (189)
+..+++.++|..++.+|........ ..+.....+|+ ++++++|.
T Consensus 31 e~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL-~k~~ipYd 81 (126)
T TIGR01689 31 EKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL-NQHNVPYD 81 (126)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-HHcCCCCc
Confidence 3334444567888888865311000 01224788998 78899873
No 325
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.52 E-value=1.6e+02 Score=25.69 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=25.7
Q ss_pred EEecCCCcccHHHH--HHHHHHHHHhccCCcEEEEEecCC
Q 029690 95 VNVASQCGLTNSNY--TELSQLYDKYKNQGLEILAFPCNQ 132 (189)
Q Consensus 95 ~F~a~~C~~C~~~~--~~l~~l~~~~~~~~v~vi~vs~d~ 132 (189)
.|....|++|+... ..+++.-++..=++|.|++++...
T Consensus 75 vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~ 114 (420)
T COG3581 75 VLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSEN 114 (420)
T ss_pred EEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccc
Confidence 34445899999544 556666666554569999998653
No 326
>PRK07329 hypothetical protein; Provisional
Probab=21.26 E-value=2.6e+02 Score=22.14 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 103 LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 103 ~C~~~~~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
.+.....+++++.++|+.+ | .+|+-+|.+ ++....+++++ .++.++|.+.
T Consensus 50 ~~~~Y~~ei~~lk~ky~~~-I-~~GlE~~~~----~~~~~~~~~~l-~~~~~DyvIg 99 (246)
T PRK07329 50 DYAKYSAEIAELNEKYGNR-I-KKGIEIGYF----APREDDILDFL-ANKDFDLKLL 99 (246)
T ss_pred CHHHHHHHHHHHHHHhhhh-c-eEEEEeCcc----cccHHHHHHHh-ccCCCCeEEE
Confidence 3677888899999999764 4 788888742 23567777777 5666666554
No 327
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=21.05 E-value=57 Score=27.77 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=19.9
Q ss_pred CCCcccHHHHHHHHHHHHHhcc
Q 029690 99 SQCGLTNSNYTELSQLYDKYKN 120 (189)
Q Consensus 99 ~~C~~C~~~~~~l~~l~~~~~~ 120 (189)
++||.|...+..|+++.+++.+
T Consensus 95 t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 95 TLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HhCHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998864
No 328
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.97 E-value=2.9e+02 Score=21.68 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccc
Q 029690 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (189)
Q Consensus 116 ~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp 157 (189)
++++++|+.|+..+-. ....+..++ ++.++..|
T Consensus 30 ~~~~~~G~~~~iaTGR--------~~~~~~~~~-~~l~~~~~ 62 (272)
T PRK10530 30 ARAREAGYKVIIVTGR--------HHVAIHPFY-QALALDTP 62 (272)
T ss_pred HHHHHCCCEEEEEcCC--------ChHHHHHHH-HhcCCCCC
Confidence 3445567776655533 456666776 66666654
No 329
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=20.61 E-value=2.4e+02 Score=17.91 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCEEEEEEecCCCcccHHHHHHHHHHHHHhccCCcEEEEEecC
Q 029690 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (189)
Q Consensus 88 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vi~vs~d 131 (189)
.|+-+-+.|++..-..=......+.+|.+.+...|+.+..+++.
T Consensus 34 ~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 34 QGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp ETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred eCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 45577888888765445555577888899999999999988876
No 330
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.41 E-value=2.9e+02 Score=21.51 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=25.2
Q ss_pred HHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCccccee
Q 029690 115 YDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (189)
Q Consensus 115 ~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l 159 (189)
.++..++|+.++..+.. +..++..++ ++.++.-|++
T Consensus 24 i~~l~~~G~~~vi~TgR--------~~~~~~~~~-~~lg~~~~~I 59 (225)
T TIGR02461 24 LEELKDLGFPIVFVSSK--------TRAEQEYYR-EELGVEPPFI 59 (225)
T ss_pred HHHHHHCCCEEEEEeCC--------CHHHHHHHH-HHcCCCCcEE
Confidence 34445568888877755 678888888 7888754544
No 331
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.40 E-value=3.1e+02 Score=21.24 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccceecccc----chHHHHHHHhc
Q 029690 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVL----ALQLYKFYKQK 174 (189)
Q Consensus 109 ~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~l~d~~----~~p~~~~l~~~ 174 (189)
+++++..+++.+.|+.=|.|+ +...+.- + ++.+.++++..|.. +....+++.+.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~----------~~g~~~~-~-k~~~~~~~i~~~~~~nv~N~~s~~~~~~~ 59 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS----------NPGLLEL-L-KELGPDLKIIADYSLNVFNSESARFLKEL 59 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc----------CHHHHHH-H-HHhCCCCcEEEecCccCCCHHHHHHHHHc
Confidence 566677777777677777675 4455444 3 46677888887777 55566666543
No 332
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=20.33 E-value=59 Score=17.56 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=10.4
Q ss_pred EEeCCCCCeeecCc
Q 029690 73 SVKDAKGQDVDLSI 86 (189)
Q Consensus 73 ~l~d~~G~~~~l~~ 86 (189)
.+.|.+|+.+++.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 36788888888754
No 333
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=20.12 E-value=1.9e+02 Score=26.17 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhCCcccce
Q 029690 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (189)
Q Consensus 109 ~~l~~l~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~~~~~fp~ 158 (189)
+.|.+..+..+.-|+.+| |.+|.|....+...+.+++++ ++.|+.+.+
T Consensus 343 ~NL~~Hi~n~~~fg~p~V-VaiN~F~~Dt~~Ei~~v~~~~-~~~g~~~~~ 390 (524)
T cd00477 343 ANLRKHIENIKKFGVPVV-VAINKFSTDTDAELALVRKLA-EEAGAFVAV 390 (524)
T ss_pred HHHHHHHHHHHHcCCCeE-EEecCCCCCCHHHHHHHHHHH-HHcCCCEEE
Confidence 556666666666677665 566766555544556688888 777887654
Done!