Query 029691
Match_columns 189
No_of_seqs 219 out of 563
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 16:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.2 1.3E-06 2.8E-11 48.8 3.2 21 60-80 1-21 (21)
2 smart00015 IQ Short calmodulin 97.8 2.3E-05 4.9E-10 45.8 2.9 22 59-80 2-23 (26)
3 KOG0160 Myosin class V heavy c 97.5 0.00025 5.4E-09 71.2 7.4 62 59-124 672-734 (862)
4 KOG0520 Uncharacterized conser 97.1 0.0015 3.2E-08 66.4 7.3 70 59-128 809-886 (975)
5 KOG0160 Myosin class V heavy c 96.7 0.0042 9E-08 62.7 7.0 66 57-125 693-758 (862)
6 PTZ00014 myosin-A; Provisional 96.5 0.0033 7E-08 63.2 4.5 41 61-101 778-819 (821)
7 PF00612 IQ: IQ calmodulin-bin 94.4 0.028 6.1E-07 31.1 1.7 19 83-101 2-20 (21)
8 COG5022 Myosin heavy chain [Cy 93.8 0.13 2.7E-06 54.6 6.2 63 59-122 744-807 (1463)
9 KOG2128 Ras GTPase-activating 92.5 0.26 5.7E-06 52.1 6.1 66 59-124 564-638 (1401)
10 KOG0164 Myosin class I heavy c 91.5 0.38 8.2E-06 48.5 5.8 24 61-84 697-720 (1001)
11 smart00015 IQ Short calmodulin 91.1 0.15 3.2E-06 29.4 1.6 19 83-101 4-22 (26)
12 KOG0520 Uncharacterized conser 90.3 0.73 1.6E-05 47.5 6.6 64 61-124 834-930 (975)
13 KOG4427 E3 ubiquitin protein l 88.6 0.45 9.9E-06 48.2 3.6 24 57-80 27-50 (1096)
14 PTZ00014 myosin-A; Provisional 85.3 1.8 3.9E-05 43.9 5.9 38 84-124 779-816 (821)
15 KOG0942 E3 ubiquitin protein l 83.3 0.81 1.7E-05 46.9 2.5 24 57-80 26-49 (1001)
16 KOG0162 Myosin class I heavy c 79.2 1.7 3.6E-05 44.3 3.0 23 61-83 697-719 (1106)
17 KOG0377 Protein serine/threoni 77.7 2.7 6E-05 40.6 3.8 35 57-91 14-48 (631)
18 KOG0161 Myosin class II heavy 70.2 5.6 0.00012 44.1 4.4 37 85-121 776-812 (1930)
19 PF08763 Ca_chan_IQ: Voltage g 69.5 5.6 0.00012 25.3 2.6 21 59-79 8-28 (35)
20 KOG0163 Myosin class VI heavy 67.3 29 0.00063 36.0 8.3 33 59-91 812-845 (1259)
21 PF15157 IQ-like: IQ-like 52.9 10 0.00023 28.9 1.9 23 59-81 46-68 (97)
22 KOG2128 Ras GTPase-activating 50.5 17 0.00036 39.2 3.6 44 60-103 592-643 (1401)
23 KOG0165 Microtubule-associated 44.5 28 0.00061 35.9 4.0 28 57-84 940-968 (1023)
24 KOG0161 Myosin class II heavy 43.9 23 0.0005 39.6 3.5 39 61-99 774-816 (1930)
25 PF15261 DUF4591: Domain of un 43.3 15 0.00033 29.5 1.6 14 172-185 57-70 (134)
26 COG5022 Myosin heavy chain [Cy 36.1 1.2E+02 0.0025 33.3 7.1 63 59-122 792-856 (1463)
27 PF03832 WSK: WSK motif; Inte 34.3 22 0.00047 22.0 0.9 19 3-21 5-25 (31)
28 KOG1419 Voltage-gated K+ chann 31.8 25 0.00054 34.9 1.4 20 58-77 338-357 (654)
29 PF09692 Arb1: Argonaute siRNA 26.9 85 0.0018 29.6 4.0 17 65-81 48-64 (396)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.24 E-value=1.3e-06 Score=48.82 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 029691 60 DVAAIRIQTAFRAYKARKTFR 80 (189)
Q Consensus 60 e~AAi~IQsafRGylaRr~~~ 80 (189)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999884
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.79 E-value=2.3e-05 Score=45.75 Aligned_cols=22 Identities=50% Similarity=0.662 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHH
Q 029691 59 EDVAAIRIQTAFRAYKARKTFR 80 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~ 80 (189)
++.||+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.51 E-value=0.00025 Score=71.23 Aligned_cols=62 Identities=26% Similarity=0.241 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHhhh-hhhhhhhhhhchHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 029691 59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~~lk-~vvrLQal~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~r~~ 124 (189)
...+++.||+.||||+.|+.|..++ +++.+|+.+||.++|+.. . ...|++.||..+|++..+
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r 734 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNR 734 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHH
Confidence 4567888999999999999999655 788999999999999821 1 446667777777666543
No 4
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.07 E-value=0.0015 Score=66.41 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHhhh-hhhhhhhhhhchHHHHHHHHhh-------hHHhHHHHHHHHHHHHHhhhhhh
Q 029691 59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTL-------SYLHTWSKLQAEIRARRLCMVKE 128 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~~lk-~vvrLQal~RG~~vRrq~~~tl-------r~~~A~v~IQs~iR~~r~~m~~e 128 (189)
...||..||.-||||+.|+.|..++ -+|++|+.+||+.+|++|.... +.+-+|-++|+.+|++..+-..|
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 3469999999999999999999655 7999999999999999997332 24567888999999988765543
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.69 E-value=0.0042 Score=62.67 Aligned_cols=66 Identities=20% Similarity=0.092 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHhhhhhhhhhhhhhchHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (189)
Q Consensus 57 ~ree~AAi~IQsafRGylaRr~~~~lk~vvrLQal~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~r~~m 125 (189)
+....+++.||+.+||+++|+........+.+|..+|++..|++|... ..+++.+|+.+|+..++.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 456789999999999999998333445788999999999999999443 479999999999999876
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.46 E-value=0.0033 Score=63.18 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-hhhhhhhhhhhhchHHHHHH
Q 029691 61 VAAIRIQTAFRAYKARKTFRR-LKGTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 61 ~AAi~IQsafRGylaRr~~~~-lk~vvrLQal~RG~~vRrq~ 101 (189)
..++.||++||||++|+.|.. ..++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999995 55899999999999998753
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.41 E-value=0.028 Score=31.06 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhchHHHHHH
Q 029691 83 KGTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 83 k~vvrLQal~RG~~vRrq~ 101 (189)
++++.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999998876
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.85 E-value=0.13 Score=54.62 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHH-hhhhhhhhhhhhhchHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 029691 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR 122 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~-~lk~vvrLQal~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~r 122 (189)
-...|+.||++|||+..|++|. .++.+..+|...+|..+++.+...+. .....++|..++...
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 807 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLG 807 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHh
Confidence 4568999999999999999998 67788888888888888876543332 356667777665543
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.46 E-value=0.26 Score=52.11 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhhhhHH---HHHHH--hhhhhhhhhhhhhchHHHHHHHHh----hhHHhHHHHHHHHHHHHHhh
Q 029691 59 EDVAAIRIQTAFRAYKA---RKTFR--RLKGTIRLQGVSQRHSVQKQATTT----LSYLHTWSKLQAEIRARRLC 124 (189)
Q Consensus 59 ee~AAi~IQsafRGyla---Rr~~~--~lk~vvrLQal~RG~~vRrq~~~t----lr~~~A~v~IQs~iR~~r~~ 124 (189)
..-..+.||.++|||+. +..+. ..+-+|.+|++.||+++|+.+... ..++.+.+.||+.+|.+..+
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccc
Confidence 34468899999999994 22333 356799999999999999988733 35899999999999998764
No 10
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=91.53 E-value=0.38 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhh
Q 029691 61 VAAIRIQTAFRAYKARKTFRRLKG 84 (189)
Q Consensus 61 ~AAi~IQsafRGylaRr~~~~lk~ 84 (189)
.-|+.||++|||+++|..|+.++.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999997764
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=91.10 E-value=0.15 Score=29.42 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.4
Q ss_pred hhhhhhhhhhhchHHHHHH
Q 029691 83 KGTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 83 k~vvrLQal~RG~~vRrq~ 101 (189)
+.++.||+.+||+++|+.+
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999987
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.27 E-value=0.73 Score=47.50 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh-hhhh----------hhhhhhhchHHHHHH----------------------HHhhhH
Q 029691 61 VAAIRIQTAFRAYKARKTFRRL-KGTI----------RLQGVSQRHSVQKQA----------------------TTTLSY 107 (189)
Q Consensus 61 ~AAi~IQsafRGylaRr~~~~l-k~vv----------rLQal~RG~~vRrq~----------------------~~tlr~ 107 (189)
.=+|+||+++|||..|+.|..+ .++- ++|.-+||+..|.-. ....+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999998832 2311 457778887666522 123344
Q ss_pred HhHHHHHHHHHHHHHhh
Q 029691 108 LHTWSKLQAEIRARRLC 124 (189)
Q Consensus 108 ~~A~v~IQs~iR~~r~~ 124 (189)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 68999999999988765
No 13
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=0.45 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHH
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (189)
Q Consensus 57 ~ree~AAi~IQsafRGylaRr~~~ 80 (189)
.+.+.||+.||..+|||++|+.++
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999987
No 14
>PTZ00014 myosin-A; Provisional
Probab=85.29 E-value=1.8 Score=43.92 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred hhhhhhhhhhchHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 029691 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (189)
Q Consensus 84 ~vvrLQal~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~r~~ 124 (189)
-++.||+.+||+++|+.+. +..++++.||+.+|++..+
T Consensus 779 ~~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999984 3357999999999998764
No 15
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=0.81 Score=46.95 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHH
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (189)
Q Consensus 57 ~ree~AAi~IQsafRGylaRr~~~ 80 (189)
.+++.+|+.||+.||||++|++..
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 456789999999999999999866
No 16
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=79.23 E-value=1.7 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhh
Q 029691 61 VAAIRIQTAFRAYKARKTFRRLK 83 (189)
Q Consensus 61 ~AAi~IQsafRGylaRr~~~~lk 83 (189)
-=|.+||.|||.|++|+.|..++
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999998776
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=77.71 E-value=2.7 Score=40.57 Aligned_cols=35 Identities=34% Similarity=0.246 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHhhhhhhhhhhh
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGV 91 (189)
Q Consensus 57 ~ree~AAi~IQsafRGylaRr~~~~lk~vvrLQal 91 (189)
.+--+||+.||.-||+|.||..-+..-...-+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 34568999999999999999987654455555665
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.15 E-value=5.6 Score=44.07 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=27.7
Q ss_pred hhhhhhhhhchHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 029691 85 TIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121 (189)
Q Consensus 85 vvrLQal~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~ 121 (189)
++.+||.|||+++|+.+..-...+.++..||..+|.+
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788877777776667777777777777777
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=69.50 E-value=5.6 Score=25.32 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHH
Q 029691 59 EDVAAIRIQTAFRAYKARKTF 79 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~ 79 (189)
+--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999998863
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=67.28 E-value=29 Score=35.99 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHH-hhhhhhhhhhh
Q 029691 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGV 91 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~-~lk~vvrLQal 91 (189)
+..+.+++|+..||||+|++++ .+-++.++-++
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 4457889999999999999988 56666555443
No 21
>PF15157 IQ-like: IQ-like
Probab=52.94 E-value=10 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHh
Q 029691 59 EDVAAIRIQTAFRAYKARKTFRR 81 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~~ 81 (189)
-+.-+.+||.+||-|++|.....
T Consensus 46 Leskvkiiqrawre~lq~qd~~~ 68 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPLE 68 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcc
Confidence 35557889999999999987543
No 22
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=50.52 E-value=17 Score=39.21 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHh--------hhhhhhhhhhhhchHHHHHHHH
Q 029691 60 DVAAIRIQTAFRAYKARKTFRR--------LKGTIRLQGVSQRHSVQKQATT 103 (189)
Q Consensus 60 e~AAi~IQsafRGylaRr~~~~--------lk~vvrLQal~RG~~vRrq~~~ 103 (189)
..-++.+|++.||+++|+.+.. ...++.+|+.+|+...|..+..
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 3458899999999999998663 2357899999999999998853
No 23
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=44.50 E-value=28 Score=35.87 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHH-hhhh
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFR-RLKG 84 (189)
Q Consensus 57 ~ree~AAi~IQsafRGylaRr~~~-~lk~ 84 (189)
+....||+.||.+.|||.+|+.|+ .+..
T Consensus 940 enkKkaavviqkmirgfiarrkfqmeisn 968 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQMEISN 968 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999997 3433
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.92 E-value=23 Score=39.56 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----hhhhhhhhhhhhchHHHH
Q 029691 61 VAAIRIQTAFRAYKARKTFRR----LKGTIRLQGVSQRHSVQK 99 (189)
Q Consensus 61 ~AAi~IQsafRGylaRr~~~~----lk~vvrLQal~RG~~vRr 99 (189)
.-.+.+|+.+|||++|+.|.. +.++..||.=+|-+..-+
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999873 336778888777765444
No 25
>PF15261 DUF4591: Domain of unknown function (DUF4591)
Probab=43.26 E-value=15 Score=29.49 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHh
Q 029691 172 KAAVKRERAMAYAF 185 (189)
Q Consensus 172 EAa~KRERAlaYAf 185 (189)
.+..+|++||+||=
T Consensus 57 ~~~~~R~kALEYAK 70 (134)
T PF15261_consen 57 RAESKRKKALEYAK 70 (134)
T ss_pred hhHHHHHHHHHHHH
Confidence 46678999999993
No 26
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=36.14 E-value=1.2e+02 Score=33.34 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHh-hhhhhhhh-hhhhchHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 029691 59 EDVAAIRIQTAFRAYKARKTFRR-LKGTIRLQ-GVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR 122 (189)
Q Consensus 59 ee~AAi~IQsafRGylaRr~~~~-lk~vvrLQ-al~RG~~vRrq~~~tlr~~~A~v~IQs~iR~~r 122 (189)
...+++.||..|+.+..|..+.. +.-+..|| .+.+...++-. ..-...+.+.+.+|+.+|+..
T Consensus 792 ~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~-~e~~~~~~~~~L~~~~~rs~~ 856 (1463)
T COG5022 792 KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRET-EEVEFSLKAEVLIQKFGRSLK 856 (1463)
T ss_pred HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666666666666663 44555566 33333333321 122333455556666555543
No 27
>PF03832 WSK: WSK motif; InterPro: IPR001573 Cell signalling mediated via GPCRs (G-protein-coupled receptors) involves the assembly of receptors, G-proteins, effectors and downstream elements into complexes that approach in design 'solid-state' signalling devices. Scaffold molecules, such as the AKAPs (A-kinase anchoring proteins), were discovered more than a decade ago and represent dynamic platforms, enabling multivalent signalling []. This family of functionally related proteins is classified on the basis of their ability to associate with the PKA holoenzyme inside cells. A shared property of most, if not all, AKAPs is the ability to form multivalent signal transduction complexes. Each anchoring protein contains at least two functional motifs []. The conserved PKA binding motif forms an amphipathic helix of 14-18 residues that interacts with hydrophobic determinants located in the extreme N terminus of the regulatory subunit dimmer. The subcellular address of each AKAP is encoded by a unique targeting motif. Gravin, an autoantigen recognised by serum from myasthenia gravis patients contains 3 repeats of this domain []. The WSK motif is short motif, named after three conserved residues found in the WXSXK motif, found in protein kinase A anchoring proteins. ; GO: 0006605 protein targeting, 0007165 signal transduction
Probab=34.29 E-value=22 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=13.8
Q ss_pred Ccc--hhhhhhcccCCCCCCc
Q 029691 3 GDW--FKTFVCQKKVKVGSSK 21 (189)
Q Consensus 3 ~~w--~k~ii~~kk~~~~~sk 21 (189)
|-| ||-||..+|.+++.++
T Consensus 5 ~~W~S~KrlVt~rkrsks~~~ 25 (31)
T PF03832_consen 5 STWASFKRLVTPRKRSKSSKE 25 (31)
T ss_pred chhHHHHhhcCcccccccchh
Confidence 567 9999999886665433
No 28
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=31.80 E-value=25 Score=34.90 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhhhhHHHH
Q 029691 58 VEDVAAIRIQTAFRAYKARK 77 (189)
Q Consensus 58 ree~AAi~IQsafRGylaRr 77 (189)
+..-||..||.+||-|.+=.
T Consensus 338 rr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hcchHHHHHHHHHHHHhccc
Confidence 34569999999999998744
No 29
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=26.95 E-value=85 Score=29.57 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.4
Q ss_pred HHHHHhhhhHHHHHHHh
Q 029691 65 RIQTAFRAYKARKTFRR 81 (189)
Q Consensus 65 ~IQsafRGylaRr~~~~ 81 (189)
+|+.+.-.|.+||++..
T Consensus 48 RiE~~IQRyr~rRRl~~ 64 (396)
T PF09692_consen 48 RIEECIQRYRARRRLDS 64 (396)
T ss_pred HHHHHHHHHHHhcCCCh
Confidence 89999999999998653
Done!