Query 029691
Match_columns 189
No_of_seqs 206 out of 563
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:32:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029691.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2309-2313//hhsearch_pdb/029691hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 82.4 7.2 66 60-126 768-834 (1080)
2 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 80.7 8.6 68 58-126 814-882 (1080)
3 2ix7_C Myosin-5A; contractIle 1.0 1 1 68.9 6.0 54 57-111 2-56 (58)
4 1n2d_C IQ2 and IQ3 motifs from 1.0 1 1 57.9 4.9 42 60-101 3-47 (48)
5 1kk8_A Myosin heavy chain, str 1.0 1 1 49.1 4.9 42 60-101 779-824 (837)
6 2l53_B CAM, voltage-gated sodi 1.0 1 1 45.6 2.8 25 56-80 2-26 (31)
7 1i84_S Smooth muscle myosin he 1.0 1 1 43.6 4.5 42 60-101 792-837 (1184)
8 2kxw_B Sodium channel protein 1.0 1 1 42.8 2.4 23 56-78 2-24 (27)
9 3gn4_A Myosin-VI; unconvention 1.0 1 1 40.6 4.4 35 59-93 44-79 (148)
10 1n2d_C IQ2 and IQ3 motifs from 1.0 1 1 40.6 5.1 43 82-125 3-45 (48)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=82.39 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999998744469999888665-4544444220337877798766677699999899999876554
Q 029691 60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (189)
Q Consensus 60 e~AAi~IQsafRgylaRr~~~~lk-~ivrLQalvRG~~vRkq~~~tl~~~~a~v~iQs~iRa~r~~m~ 126 (189)
..||+.||++||||++|+.|..++ +++.||+.+||+.+|+.+ ..++...|++.||+.+|++.++..
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8777788888778899998501277899999999998876202-212200467778788754999999
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=80.73 Aligned_cols=68 Identities=25% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46899999998744469999888665-4544444220337877798766677699999899999876554
Q 029691 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (189)
Q Consensus 58 ree~AAi~IQsafRgylaRr~~~~lk-~ivrLQalvRG~~vRkq~~~tl~~~~a~v~iQs~iRa~r~~m~ 126 (189)
+++.||+.||++||||++|+.|..++ +++.+|+.+||+.+|+.+. .++...+++.||+.+|++..+..
T Consensus 814 r~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2004677787887549999999999888899999998899999999-99987788899999999999999
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=1.00 E-value=1 Score=68.92 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 046899999998744469999888665-4544444220337877798766677699
Q 029691 57 PVEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTW 111 (189)
Q Consensus 57 ~ree~AAi~IQsafRgylaRr~~~~lk-~ivrLQalvRG~~vRkq~~~tl~~~~a~ 111 (189)
...+.|||.||+.||||++|+.|..++ +++.+|+.+||+++|+.+. .++...++
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC
T ss_conf 68899899999999999999999999999999999999999999999-99987073
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=57.90 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCHHHHHHH
Q ss_conf 899999998744469999888665---454444422033787779
Q 029691 60 DVAAIRIQTAFRAYKARKTFRRLK---GTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 60 e~AAi~IQsafRgylaRr~~~~lk---~ivrLQalvRG~~vRkq~ 101 (189)
..|||.||+.||||++|+.|..++ .++.+|+.+||+.+|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999998888899999999869999866
No 5
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=1.00 E-value=1 Score=49.09 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCHHHHHHH
Q ss_conf 89999999874446999988866----5454444422033787779
Q 029691 60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 60 e~AAi~IQsafRgylaRr~~~~l----k~ivrLQalvRG~~vRkq~ 101 (189)
..+|+.||+++|||++|+.|..+ .+++.+|..+|++++++..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 7679999999999999999999999999999999999999997353
No 6
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=45.57 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6046899999998744469999888
Q 029691 56 MPVEDVAAIRIQTAFRAYKARKTFR 80 (189)
Q Consensus 56 ~~ree~AAi~IQsafRgylaRr~~~ 80 (189)
..+||.+|++||.|||+|+.|+.+.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 2 PGSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0599999999999999999988231
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=43.59 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCHHHHHHH
Q ss_conf 89999999874446999988866----5454444422033787779
Q 029691 60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA 101 (189)
Q Consensus 60 e~AAi~IQsafRgylaRr~~~~l----k~ivrLQalvRG~~vRkq~ 101 (189)
..+++.||+.+|||++|+.|..+ .+++.+|..+|+++.++.+
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999987410
No 8
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=42.76 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60468999999987444699998
Q 029691 56 MPVEDVAAIRIQTAFRAYKARKT 78 (189)
Q Consensus 56 ~~ree~AAi~IQsafRgylaRr~ 78 (189)
...||.||++||.|||+|+.++.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 2 RKQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 19999999999999999998852
No 9
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=1.00 E-value=1 Score=40.59 Aligned_cols=35 Identities=17% Similarity=0.488 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 6899999998744469999888-6654544444220
Q 029691 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQ 93 (189)
Q Consensus 59 ee~AAi~IQsafRgylaRr~~~-~lk~ivrLQalvR 93 (189)
+..|+|.||++.|||++|+.++ .+.|++++.++..
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~ 79 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKK 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999899999999999999865349999999999999
No 10
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=40.59 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65454444422033787779876667769999989999987655
Q 029691 82 LKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (189)
Q Consensus 82 lk~ivrLQalvRG~~vRkq~~~tl~~~~a~v~iQs~iRa~r~~m 125 (189)
.+.++.||+.+||+++|+.+ ..++...+++.||+.+||+.++.
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999-99988888999999998699998
Done!