BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029692
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
          Length = 732

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 3   PEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEIN 62
           PE W FP + P  P  L C+CR  YLPMSY Y  R       L+  LR+E+Y + ++ I+
Sbjct: 213 PEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASID 272

Query: 63  WSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYED 122
           W   R+  A ++++ PH+ +  +++  L+     +  H     LRQ++++     I  +D
Sbjct: 273 WLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADD 327

Query: 123 EASRYMTIGCVEKPLNMLCCW-VEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173
             ++ ++IG + K +NML  W V+ P S  F++H++R+ +YLW+G DGM++Q
Sbjct: 328 RFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQ 379


>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
          Length = 732

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 3   PEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEIN 62
           PE W FP + P  P  L C+CR  YLPMSY Y  R       L+  LR+E+Y + ++ I+
Sbjct: 213 PEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASID 272

Query: 63  WSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYED 122
           W   R+  A ++++ PH+ +  +++  L+     +  H     LRQ++++     I  +D
Sbjct: 273 WLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADD 327

Query: 123 EASRYMTIGCVEKPLNMLCCW-VEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173
             ++ ++IG + K +NML  W V+ P S  F++H++R+ +YLW+G DGM++Q
Sbjct: 328 RFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQ 379


>pdb|1TWY|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|B Chain B, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|C Chain C, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|D Chain D, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|E Chain E, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|F Chain F, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|G Chain G, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
 pdb|1TWY|H Chain H, Crystal Structure Of An Abc-Type Phosphate Transport
           Receptor From Vibrio Cholerae
          Length = 290

 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 117 LIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARL 159
           L+++  +A  +++IG V+K +  +     DP SD   KH  +L
Sbjct: 193 LVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQL 235


>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
 pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
          Length = 1661

 Score = 30.8 bits (68), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 70   CAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLE 112
            CA+E+ F  HT  +  L D L    EP +++    +L QK LE
Sbjct: 1511 CAEENCFMHHTEKEVTLEDRLDKACEPGVDYVYKTRLIQKKLE 1553


>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
           PhosphomannomutasePHOSPHOGLUCOMUTASE
 pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
           PhosphomannomutasePHOSPHOGLUCOMUTASE
          Length = 455

 Score = 26.6 bits (57), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 48  QLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLR 107
           ++ +  +T+ ++ I WS +     +ED               +S  V  +L+H  + K++
Sbjct: 123 EIEDLFFTERFNTIEWSSLTTEVKRED-------------RVISTYVNGILSHVDIEKIK 169

Query: 108 QKSLEIAIN 116
           +K+ ++ I+
Sbjct: 170 KKNYKVLID 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,020,606
Number of Sequences: 62578
Number of extensions: 232649
Number of successful extensions: 538
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 6
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)