Query 029692
Match_columns 189
No_of_seqs 119 out of 595
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 16:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 6.2E-60 1.3E-64 443.8 13.1 189 1-189 239-428 (759)
2 PLN02993 lupeol synthase 100.0 2E-59 4.3E-64 441.0 13.5 189 1-189 239-428 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 1.8E-54 4E-59 396.4 7.8 189 1-189 239-427 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 6.1E-53 1.3E-57 394.1 13.6 184 1-189 132-316 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 2.6E-45 5.7E-50 343.1 14.1 182 1-189 135-318 (634)
6 TIGR01507 hopene_cyclase squal 100.0 2.6E-43 5.7E-48 329.3 12.4 170 1-189 151-326 (635)
7 TIGR01787 squalene_cyclas squa 100.0 2.2E-39 4.7E-44 302.5 13.1 170 1-189 135-306 (621)
8 COG1657 SqhC Squalene cyclase 99.6 9.9E-16 2.1E-20 139.6 4.1 158 1-189 50-210 (517)
9 TIGR01507 hopene_cyclase squal 96.7 0.0022 4.8E-08 61.0 5.3 84 103-189 285-390 (635)
10 cd02897 A2M_2 Proteins similar 96.1 0.011 2.4E-07 50.5 5.5 74 106-189 99-189 (292)
11 PLN03012 Camelliol C synthase 92.4 0.33 7.2E-06 47.3 6.4 80 108-189 589-690 (759)
12 PLN02993 lupeol synthase 90.8 0.67 1.5E-05 45.3 6.6 80 108-189 589-690 (763)
13 cd02889 SQCY Squalene cyclase 88.1 1.9 4.1E-05 37.2 6.9 83 105-189 113-229 (348)
14 TIGR03463 osq_cycl 2,3-oxidosq 87.7 1.6 3.5E-05 41.8 6.7 80 108-189 476-574 (634)
15 COG1657 SqhC Squalene cyclase 81.4 0.92 2E-05 42.4 1.9 110 3-119 357-469 (517)
16 PF13243 Prenyltrans_1: Prenyl 68.6 4.7 0.0001 28.6 2.5 53 109-161 46-104 (109)
17 KOG0497 Oxidosqualene-lanoster 67.2 4.2 9.1E-05 39.4 2.4 60 2-61 255-314 (760)
18 PF13243 Prenyltrans_1: Prenyl 66.8 1.3 2.9E-05 31.6 -0.8 74 111-186 1-80 (109)
19 cd02892 SQCY_1 Squalene cyclas 65.8 19 0.00041 34.4 6.6 80 108-189 475-574 (634)
20 TIGR01787 squalene_cyclas squa 65.0 20 0.00044 34.2 6.6 80 108-189 459-558 (621)
21 cd00688 ISOPREN_C2_like This g 56.7 43 0.00094 26.9 6.4 82 106-189 101-197 (300)
22 cd00688 ISOPREN_C2_like This g 51.9 51 0.0011 26.5 6.1 81 107-189 50-150 (300)
23 cd02896 complement_C3_C4_C5 Pr 51.7 36 0.00078 29.1 5.4 74 106-189 100-199 (297)
24 cd02889 SQCY Squalene cyclase 50.3 9.7 0.00021 32.7 1.7 51 111-161 1-57 (348)
25 PF13249 Prenyltrans_2: Prenyl 45.6 26 0.00057 24.6 3.1 73 115-189 1-82 (113)
26 cd02897 A2M_2 Proteins similar 41.9 68 0.0015 27.1 5.6 50 133-189 238-289 (292)
27 TIGR03391 FeS_syn_CsdE cystein 40.7 8.8 0.00019 29.7 -0.1 12 169-180 50-61 (138)
28 COG3755 Uncharacterized protei 40.4 42 0.0009 25.7 3.5 61 83-144 46-111 (127)
29 COG2166 sufE Cysteine desulfur 36.7 11 0.00023 29.6 -0.2 11 170-180 51-61 (144)
30 PRK09296 cysteine desufuration 35.8 13 0.00028 28.7 0.1 11 170-180 46-56 (138)
31 cd02891 A2M_like Proteins simi 31.9 1.3E+02 0.0028 24.7 5.7 58 106-163 46-114 (282)
32 PF02657 SufE: Fe-S metabolism 31.6 21 0.00046 26.9 0.7 13 168-180 35-47 (125)
33 cd02891 A2M_like Proteins simi 31.2 35 0.00077 28.2 2.1 39 149-189 48-89 (282)
34 PRK15019 CsdA-binding activato 28.8 20 0.00043 28.1 0.1 11 170-180 56-66 (147)
35 KOG4505 Na+/H+ antiporter [Ino 26.1 72 0.0016 28.9 3.1 51 11-61 311-370 (467)
36 PF07678 A2M_comp: A-macroglob 25.4 2.3E+02 0.005 23.4 6.1 63 105-175 109-174 (246)
37 KOG0084 GTPase Rab1/YPT1, smal 23.8 19 0.00041 29.7 -0.8 8 176-183 59-66 (205)
38 PF12703 plasmid_Toxin: Toxin 21.2 80 0.0017 21.7 2.0 54 105-162 12-72 (74)
39 KOG0094 GTPase Rab6/YPT6/Ryh1, 20.3 24 0.00052 29.3 -0.9 8 176-183 72-79 (221)
40 PF10363 DUF2435: Protein of u 20.0 2.9E+02 0.0062 19.5 4.8 56 103-163 16-71 (92)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=6.2e-60 Score=443.83 Aligned_cols=189 Identities=64% Similarity=1.192 Sum_probs=181.2
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
|||||||||+||||||||||||||+|||||+||+++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++
T Consensus 239 ~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~ 318 (759)
T PLN03012 239 MPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHP 318 (759)
T ss_pred CChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCh-HHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhh
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLN-KLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARL 159 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l 159 (189)
++++.++..|+++.++++..++++ +||++|+++|++||++||++|+|+||+||++++||++||.++||||.||+|++||
T Consensus 319 ~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri 398 (759)
T PLN03012 319 LIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRI 398 (759)
T ss_pred HHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 999988888878888877655533 6999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 160 GEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
+||+|+++|||+||+|+||||||||++.||
T Consensus 399 ~d~lw~~~dGm~~q~~gSqvWDTa~~~qAl 428 (759)
T PLN03012 399 SDYLWIAEDGMKMQSFGSQLWDSGFALQAL 428 (759)
T ss_pred hhcEEEeCCceEEcCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999986
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2e-59 Score=441.05 Aligned_cols=189 Identities=62% Similarity=1.157 Sum_probs=180.7
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
|||||||||+||||||||||||||+|||||+||+++||++|++|++.+||+|||++||++|+|.++|+.++++|+|+|++
T Consensus 239 ~PpElwLLP~~~P~hp~~~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~ 318 (763)
T PLN02993 239 MPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHP 318 (763)
T ss_pred CChhHHHccCcCCccHHHhHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCh-HHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhh
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLN-KLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARL 159 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l 159 (189)
++++.++..+++++|+++++++++ +||++|+++|+++|++||++|+|.+|+|||+++||++||.++||||.||+|++|+
T Consensus 319 ~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri 398 (763)
T PLN02993 319 LVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARI 398 (763)
T ss_pred HHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 988888777778899888666444 7999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 160 GEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
+||+|+++|||+||+|+||||||||++.||
T Consensus 399 ~d~lw~~edgm~~q~~gSqvWDTa~a~qAl 428 (763)
T PLN02993 399 PDYMWVAEDGMKMQSFGSQLWDTGFAIQAL 428 (763)
T ss_pred hhcEEEeCCceEEcCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999986
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=396.44 Aligned_cols=189 Identities=60% Similarity=1.141 Sum_probs=185.4
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
+|||+||||+|+|+|++++|||+|.||+||+|+|++||+++.+|++.+||+|||++||++|+|.++||.|+++|+|+||+
T Consensus 239 ~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs 318 (760)
T KOG0497|consen 239 LPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHS 318 (760)
T ss_pred CCchhhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhhc
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLG 160 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l~ 160 (189)
.+++.+++.|+++.|+++++|+.+-+|++|++.++|+|++||++|+|++|+||++++||++||.++|++..||+|+.|++
T Consensus 319 ~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~Ri~ 398 (760)
T KOG0497|consen 319 LLQDLLWALLHKFSEPLLNRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLARIP 398 (760)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhcccc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 161 EYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 161 ~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
||+|+++|||+||+++||+|||+++++|+
T Consensus 399 d~lw~gedGmkmq~~~sQ~Wdt~falqal 427 (760)
T KOG0497|consen 399 DFLWIAEDGMKMQGFNSQLWDTAFALQAL 427 (760)
T ss_pred CeEEEcCCCceEeecchhHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=6.1e-53 Score=394.10 Aligned_cols=184 Identities=33% Similarity=0.587 Sum_probs=175.3
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
|||||||||+||||||||||||+|+|++||+||+++||+++++|++.+||+|||++||++|+|.+.|+.++++|+|+|++
T Consensus 132 ~P~El~lLP~~~P~~~~~~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~ 211 (634)
T TIGR03463 132 VPPELWLLPESLPFHPSRFYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRT 211 (634)
T ss_pred CCHHHHHccccCCcCHHHHHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhhc
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLG 160 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l~ 160 (189)
++++.+|++| +.+++. .++++|++|+++|++||++|+++|+|++|+||++++||++++.+++|||.+++|+++|+
T Consensus 212 ~~~~~~~~~l-~~~~~~----~~~~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~ 286 (634)
T TIGR03463 212 FWLRAANQVM-YGYERL----AGKQLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLE 286 (634)
T ss_pred HHHHHHHHHH-HHhhcc----CCHHHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 9999999999 557743 35789999999999999999999999999999999999999999999999999999999
Q ss_pred cceEecCC-ceEEecCCCChhhHHHhhhcC
Q 029692 161 EYLWVGED-GMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 161 ~~l~~~~~-g~~~Q~~~S~vWDTAl~~~Al 189 (189)
+|+|.++| ||++|+|.|++|||||++.||
T Consensus 287 ~~~~~~~~~g~~~q~~~s~~WDTala~~AL 316 (634)
T TIGR03463 287 DYRYEDDDRGLRYNGYNSSEWDTAFAVQAL 316 (634)
T ss_pred hhEEEcCCCCEEEeeCCCCchhHHHHHHHH
Confidence 99999999 899999999999999999986
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=2.6e-45 Score=343.07 Aligned_cols=182 Identities=43% Similarity=0.784 Sum_probs=166.3
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
|||||||||+|||||||+||||+|+|++||+||+++||++|.++++..+|+|||++||++|+|..+|+ ++.|.+.|++
T Consensus 135 ~P~El~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~ 212 (634)
T cd02892 135 LPPELWLLPSWLPFHPYKFWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQ 212 (634)
T ss_pred CCHhHHhcCCcCCccHHHHHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChH
Confidence 79999999999999999999999999999999999999999998888899999999999999998888 7788889999
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcC-CCCHHHHHHHHhh
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVED-PNSDYFKKHLARL 159 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~-~d~p~~~~~l~~l 159 (189)
.+|..+|+++ +.++.+ +++++|++|+++|++||.+++++|++.|+.|+++.++|++++.+| +|||.+++|++++
T Consensus 213 ~~~~~~~~~~-~~~~~~----~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l 287 (634)
T cd02892 213 RLFDALDRLL-HWYEPL----PPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERI 287 (634)
T ss_pred HHHHHHHHHH-HHHHhc----CcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999998 456643 367899999999999999888888888888888888888888888 8999999999999
Q ss_pred ccceEecCCceE-EecCCCChhhHHHhhhcC
Q 029692 160 GEYLWVGEDGMR-VQEKCVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~-~Q~~~S~vWDTAl~~~Al 189 (189)
++|+|..+||+. +|+|+||||||||++.||
T Consensus 288 ~~~~~~~~~g~~~~~~~~s~~wDTala~~AL 318 (634)
T cd02892 288 DDFLWLGPEGMKMCQTNGSQVWDTALAVQAL 318 (634)
T ss_pred HhcEEEecCCcEEEcCCCCchHHHHHHHHHH
Confidence 999999977765 466799999999999986
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2.6e-43 Score=329.26 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=148.0
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHh-hhhccCCCCCCcccccccCCCccCCCCCh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLR-EEIYTQPYSEINWSKMRHFCAKEDIFFPH 79 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr-~EL~~~~~~~i~w~~~r~~~~~~d~~~p~ 79 (189)
|||||||||+|||||||+||||+|+|+|||+||+++||+++++.. +| +|||++|+++ .|+.+++.| +
T Consensus 151 ~P~El~llP~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~---~~~~eL~~~~~~~-----~~~~~~~~~----~ 218 (635)
T TIGR01507 151 VPPEIMLLPKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLPER---ARVPELYETDVPK-----PRRRGAKGG----T 218 (635)
T ss_pred CCHHHHhCCCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCCcc---cChHhhcCCChHH-----hcccCCccC----C
Confidence 799999999999999999999999999999999999999988733 54 9999999854 344555454 3
Q ss_pred hH-HHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHHhhcCCCC-ceeecCCchHHHHHHHHh-cC--CCCHHHHH
Q 029692 80 TT-VQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASR-YMTIGCVEKPLNMLCCWV-ED--PNSDYFKK 154 (189)
Q Consensus 80 ~~-~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~~e~~~t~-~~~i~Pv~~~~nml~~l~-~~--~d~p~~~~ 154 (189)
++ +|..+|+.| +.++.+. +.++|++|+++|++||+.++++|+ |++|+| +|+|||++|. +| +|||.++|
T Consensus 219 ~~~~~~~~~~~l-~~~~~l~----~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~ 291 (635)
T TIGR01507 219 GWGIFDALDRAL-HGYEKLS----VHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKL 291 (635)
T ss_pred cHHHHHHHHHHH-HHHHhcC----CcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHH
Confidence 45 899999998 5677543 567999999999999985555555 999999 9999999995 66 79999999
Q ss_pred HHHhhccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 155 HLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 155 ~l~~l~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
|++++++|+|.++||+++|+|+||||||||++.||
T Consensus 292 ~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL 326 (635)
T TIGR01507 292 GWEGIDLYGVELDDSWMFQACVSPVWDTALAVLAL 326 (635)
T ss_pred HHHHHHHheEecCCceEecCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999986
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=2.2e-39 Score=302.46 Aligned_cols=170 Identities=39% Similarity=0.713 Sum_probs=140.8
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
|||||||||+|||||++++|||+|+|++||+|++++|++.+.++ |+|||++| +++ .+.|+.++++|.|.|++
T Consensus 135 ~P~El~llP~~~p~~~~~~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~ 206 (621)
T TIGR01787 135 LPPEIMLLPKWLPIHPSKSWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHS 206 (621)
T ss_pred CCHhHHhcCcccCcCcchhhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHH
Confidence 79999999999999999999999999999999999999998887 69999999 776 35677788889898887
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHH-hhcCCCCceeecCCchHHHHHHHHhcC-CCCHHHHHHHHh
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIH-YEDEASRYMTIGCVEKPLNMLCCWVED-PNSDYFKKHLAR 158 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~-~e~~~t~~~~i~Pv~~~~nml~~l~~~-~d~p~~~~~l~~ 158 (189)
++.+.+..++. .++ . ..+|++|+++|++||. +++.++ |++||++++||++++.+| ||||.+++|+++
T Consensus 207 ~~~~~~~~~~~-~~~----~---~~~~~~a~~~a~~~~~~~~~~~g---~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~ 275 (621)
T TIGR01787 207 WLLRALYGLLN-LFY----H---PFLRKALRKRALQWLYEHIAADG---SIGPISKAMAMLALWFLDGPNSPAFQKHLQR 275 (621)
T ss_pred HHHHHHHHHHh-hcc----c---ccccHHHHHHHHHHHHHHhccCC---CchhHhHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 76655555442 111 1 1137777777777773 544554 555556677999988888 899999999999
Q ss_pred hccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 159 LGEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 159 l~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
|++|+|+++|||++|+|+||||||||++.||
T Consensus 276 l~~~~~~~~dg~~~q~~~s~vWDTalai~AL 306 (621)
T TIGR01787 276 IDDYLWLQLDGMKMQGTGSQVWDTAFAIQAL 306 (621)
T ss_pred HhhcEEEeCCccEEecCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.58 E-value=9.9e-16 Score=139.60 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=108.8
Q ss_pred CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
.||+.|+||.-+|+|+|++|||+|.+++| + ..| +=.++|+.+ ++-.++++|.+
T Consensus 50 ~p~~~~~lp~~~p~~~~~~~~~~r~~~~p---~--------~~~----~~~~~~~~~------------~~~~~l~yp~~ 102 (517)
T COG1657 50 APPWVMLLPNTLPVHFYQMSSWARSSTVP---L--------IAP----ASDPLLTEG------------VKNVLLLYPTS 102 (517)
T ss_pred CCchHhhCCCcccchHHHHHHHhhhcccc---c--------ccc----ccccccccc------------ccceeEEcCCc
Confidence 59999999999999999999999999999 1 111 103334433 11234455655
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHh-cCC-CCHHHHHHHHh
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWV-EDP-NSDYFKKHLAR 158 (189)
Q Consensus 81 ~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~-~~~-d~p~~~~~l~~ 158 (189)
.....+...+.+..+... ..+..+++.+ +.+.-|+. |..++++++++|+++++|+.+.+. ++. ++..++++..+
T Consensus 103 ~~~~r~~~~~~~~~~~~~-~~~~~~~~~~--~~a~l~~~-e~Qn~dg~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~ 178 (517)
T COG1657 103 GDVERLLLLLDHYFKRGF-PAPVTSLRVR--KEAELWKL-ERQNDDGSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELR 178 (517)
T ss_pred chHHHHHHHHHHHHhhcc-Cccchhhhhh--hhhheeee-eecccccccccchhhhhHHHHHHHHhhhccchHhhhhhhh
Confidence 433333333333344333 3446677777 55566663 244555667888889999999999 675 45888888888
Q ss_pred hccceEecCCceEE-ecCCCChhhHHHhhhcC
Q 029692 159 LGEYLWVGEDGMRV-QEKCVTLADNIPAILNL 189 (189)
Q Consensus 159 l~~~l~~~~~g~~~-Q~~~S~vWDTAl~~~Al 189 (189)
..++.++...|+.+ |.++||+|||+++..++
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~q~wD~~f~~~~~ 210 (517)
T COG1657 179 AEDSELVKAVGRGLAWLLGSQVWDGGFIRRAL 210 (517)
T ss_pred hhhhhhhcccccccccccccccccchhhhhhh
Confidence 88888877777665 88899999999987664
No 9
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=96.75 E-value=0.0022 Score=61.00 Aligned_cols=84 Identities=10% Similarity=-0.069 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceeecC----CchHHHHHHHHh-cC--CCCHHHHHHHHhhccceEecCCc-----e
Q 029692 103 LNKLRQKSLEIAINLIHYEDEASRYMTIGC----VEKPLNMLCCWV-ED--PNSDYFKKHLARLGEYLWVGEDG-----M 170 (189)
Q Consensus 103 ~~~lR~~Al~~a~~~i~~e~~~t~~~~i~P----v~~~~nml~~l~-~~--~d~p~~~~~l~~l~~~l~~~~~g-----~ 170 (189)
-.+.++++++++.+++...+++ ..++| +=-|.+++.|+. .| +++|.++|+.+-|.+..+..++. .
T Consensus 285 ~~~~~~~~l~~l~~~~~~~~~g---~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~ 361 (635)
T TIGR01507 285 HDAFIKLGWEGIDLYGVELDDS---WMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRP 361 (635)
T ss_pred CCHHHHHHHHHHHHheEecCCc---eEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCC
Confidence 3578999999999998632232 34433 223788888887 45 58999999999999888764432 2
Q ss_pred EEe---------cC-CCChhhHHHhhhcC
Q 029692 171 RVQ---------EK-CVTLADNIPAILNL 189 (189)
Q Consensus 171 ~~Q---------~~-~S~vWDTAl~~~Al 189 (189)
++| ++ -+.|||||.++.||
T Consensus 362 ~~~~GGW~f~~~~~~~pd~ddTa~~L~AL 390 (635)
T TIGR01507 362 NLEPGGWAFQFDNVYYPDVDDTAVVVWAL 390 (635)
T ss_pred CCCCCccCCCCCCCCCCCchhHHHHHHHH
Confidence 234 56 58999999999885
No 10
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=96.13 E-value=0.011 Score=50.48 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCceeec-------------CCchHHHHHHHHhc-C-C-CCHHHHHHHHhhccceEecCC
Q 029692 106 LRQKSLEIAINLIH-YEDEASRYMTIG-------------CVEKPLNMLCCWVE-D-P-NSDYFKKHLARLGEYLWVGED 168 (189)
Q Consensus 106 lR~~Al~~a~~~i~-~e~~~t~~~~i~-------------Pv~~~~nml~~l~~-~-~-d~p~~~~~l~~l~~~l~~~~~ 168 (189)
+.+.+++++++|+. +|+++++|+... .+.-+.+++.+|.+ | + +++.++++++-|.+..-
T Consensus 99 v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~---- 174 (292)
T cd02897 99 IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALD---- 174 (292)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcc----
Confidence 56789999999996 666666665321 13356788888873 4 3 68999999987766432
Q ss_pred ceEEecCCCChhhHHHhhhcC
Q 029692 169 GMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 169 g~~~Q~~~S~vWDTAl~~~Al 189 (189)
..+++|+||++++||
T Consensus 175 ------~~~~~y~~al~a~AL 189 (292)
T cd02897 175 ------SISDPYTLALAAYAL 189 (292)
T ss_pred ------cCCCHHHHHHHHHHH
Confidence 167899999999986
No 11
>PLN03012 Camelliol C synthase
Probab=92.39 E-value=0.33 Score=47.29 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH-hhcCCCCcee---ecCCchHHHHHHHHh-cC---CCCHHHHHHHHhhccceEecCCceE--------
Q 029692 108 QKSLEIAINLIH-YEDEASRYMT---IGCVEKPLNMLCCWV-ED---PNSDYFKKHLARLGEYLWVGEDGMR-------- 171 (189)
Q Consensus 108 ~~Al~~a~~~i~-~e~~~t~~~~---i~Pv~~~~nml~~l~-~~---~d~p~~~~~l~~l~~~l~~~~~g~~-------- 171 (189)
+.++++|.+||+ .|+.+|+|.+ +...-.+...|.+|. .| ++++.++|+++=|.+-. .+||-.
T Consensus 589 ~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q--~~DGGWGEs~~Sc~ 666 (759)
T PLN03012 589 NAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQ--KDNGGWGESYLSCP 666 (759)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhc--CCCCCcCCCCCCCC
Confidence 679999999996 6666666655 555557777888887 33 56799999998665542 233322
Q ss_pred ----Ee--cCCCChhhHHHhhhcC
Q 029692 172 ----VQ--EKCVTLADNIPAILNL 189 (189)
Q Consensus 172 ----~Q--~~~S~vWDTAl~~~Al 189 (189)
++ +..|++=-||+|+.||
T Consensus 667 ~~~y~~~~~~~S~~~qTaWAl~aL 690 (759)
T PLN03012 667 KKIYIAQEGEISNLVQTAWALMGL 690 (759)
T ss_pred CccccCCCCCCCcHHHHHHHHHHH
Confidence 21 1249999999999886
No 12
>PLN02993 lupeol synthase
Probab=90.82 E-value=0.67 Score=45.25 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH-hhcCCCCcee---ecCCchHHHHHHHHh-cC---CCCHHHHHHHHhhccceEecCCceE--------
Q 029692 108 QKSLEIAINLIH-YEDEASRYMT---IGCVEKPLNMLCCWV-ED---PNSDYFKKHLARLGEYLWVGEDGMR-------- 171 (189)
Q Consensus 108 ~~Al~~a~~~i~-~e~~~t~~~~---i~Pv~~~~nml~~l~-~~---~d~p~~~~~l~~l~~~l~~~~~g~~-------- 171 (189)
+.++++|++||. .|+.+|.|.+ +..+-.+...|.+|. .| ++++.++|+++=|.+- ..+||-.
T Consensus 589 ~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~--Q~~DGGWGEs~~S~~ 666 (763)
T PLN02993 589 IKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTI--QRDDGGWGESYLSCP 666 (763)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh--cCCCCCcCcCcCcCC
Confidence 679999999996 5666666644 333335777788887 44 2569999999866653 2334433
Q ss_pred ----Ee--cCCCChhhHHHhhhcC
Q 029692 172 ----VQ--EKCVTLADNIPAILNL 189 (189)
Q Consensus 172 ----~Q--~~~S~vWDTAl~~~Al 189 (189)
++ +..|++=-||+|+.||
T Consensus 667 ~~~y~~~~~~~St~~qTAwAllaL 690 (763)
T PLN02993 667 EQRYIPLEGNRSNLVQTAWAMMGL 690 (763)
T ss_pred CcccccCCCCCCchhhHHHHHHHH
Confidence 21 1248999999999886
No 13
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=88.09 E-value=1.9 Score=37.16 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHH-hhcCCCCceeecC-----------------------CchHHHHHHHHh-cC--CCC------HH
Q 029692 105 KLRQKSLEIAINLIH-YEDEASRYMTIGC-----------------------VEKPLNMLCCWV-ED--PNS------DY 151 (189)
Q Consensus 105 ~lR~~Al~~a~~~i~-~e~~~t~~~~i~P-----------------------v~~~~nml~~l~-~~--~d~------p~ 151 (189)
..-..+++++.+|+. .|++++.|....| +..+...+.+|. .+ .++ +.
T Consensus 113 ~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~ 192 (348)
T cd02889 113 KVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPA 192 (348)
T ss_pred hhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHH
Confidence 356789999999996 5666666764433 122445566665 33 233 67
Q ss_pred HHHHHHhhccceEecCCceEEecC-CCChhhHHHhhhcC
Q 029692 152 FKKHLARLGEYLWVGEDGMRVQEK-CVTLADNIPAILNL 189 (189)
Q Consensus 152 ~~~~l~~l~~~l~~~~~g~~~Q~~-~S~vWDTAl~~~Al 189 (189)
++++++-+.+.. .+||-..... .+....|++++.||
T Consensus 193 i~~a~~~L~~~q--~~dG~w~~~~~~~~~y~ta~a~~aL 229 (348)
T cd02889 193 IRRAVKYLEREQ--EPDGSWYGRWGVCFIYGTWFALEAL 229 (348)
T ss_pred HHHHHHHHHHhC--CCCCCccccCCCcchHHHHHHHHHH
Confidence 788887776654 3455444333 35677889888775
No 14
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=87.67 E-value=1.6 Score=41.75 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHH-hhcCCCCcee---ecCCchHHHHHHHHh-cC--CCCHHHHHHHHhhccceEecCCceE---------
Q 029692 108 QKSLEIAINLIH-YEDEASRYMT---IGCVEKPLNMLCCWV-ED--PNSDYFKKHLARLGEYLWVGEDGMR--------- 171 (189)
Q Consensus 108 ~~Al~~a~~~i~-~e~~~t~~~~---i~Pv~~~~nml~~l~-~~--~d~p~~~~~l~~l~~~l~~~~~g~~--------- 171 (189)
+.++++|.+|+. .|++++++.+ +...-.+...+.+|. .| .+++.++|+++-|.+- ..+||-.
T Consensus 476 ~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~--Q~~DGgWg~~~~s~~~ 553 (634)
T TIGR03463 476 TRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSY--QRADGGWGEVYESCLQ 553 (634)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHc--cCCCCCccCccCcccc
Confidence 578999999996 5655555422 222225677777777 45 4789999999977764 3455433
Q ss_pred ---EecCCCChhhHHHhhhcC
Q 029692 172 ---VQEKCVTLADNIPAILNL 189 (189)
Q Consensus 172 ---~Q~~~S~vWDTAl~~~Al 189 (189)
..+..|++=-||.++.||
T Consensus 554 ~~y~~~~~S~~~~TA~Al~aL 574 (634)
T TIGR03463 554 ARYVEGKQSQAVMTSWALLAL 574 (634)
T ss_pred ccccCCCCCcHHHHHHHHHHH
Confidence 223368899999998876
No 15
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=81.41 E-value=0.92 Score=42.38 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=79.7
Q ss_pred CcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCC---hhhhhHhhhhccCCCCCCcccccccCCCccCCCCCh
Q 029692 3 PEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPIT---SLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPH 79 (189)
Q Consensus 3 pEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~---p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~ 79 (189)
+.-|||+.+-|.+.+..+.+-+.+|.||..+.+.+..++.. +.+..++++|.....+...|...+..++........
T Consensus 357 a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~ 436 (517)
T COG1657 357 ALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTE 436 (517)
T ss_pred HHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccccc
Confidence 45689999999999999999999999999999999987654 677788899998888888898777777666655556
Q ss_pred hHHHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHHHHH
Q 029692 80 TTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIH 119 (189)
Q Consensus 80 ~~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a~~~i~ 119 (189)
+.+...-.+.+...+... . .++.+++.-.+...
T Consensus 437 ~sl~~~~~wal~~~~~a~------~-~~~~~i~~~~~~~~ 469 (517)
T COG1657 437 SSLLVQTNWALIALLTAL------E-PNQEAIKPGINLLV 469 (517)
T ss_pred chhhcchhHHHHHHHHhc------c-cchhhhcccccccc
Confidence 655443333332222211 1 15566777766663
No 16
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=68.57 E-value=4.7 Score=28.61 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH-hhcCCCCceeecCC--chHHHHHHHHh---cCCCCHHHHHHHHhhcc
Q 029692 109 KSLEIAINLIH-YEDEASRYMTIGCV--EKPLNMLCCWV---EDPNSDYFKKHLARLGE 161 (189)
Q Consensus 109 ~Al~~a~~~i~-~e~~~t~~~~i~Pv--~~~~nml~~l~---~~~d~p~~~~~l~~l~~ 161 (189)
.+++++.+|+. +|.++++|++-..- +.+.-.+.++. ..++++.++|+++=|.+
T Consensus 46 ~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~~~~~~l~~~~~~~~~~~~~r~~~wi~~ 104 (109)
T PF13243_consen 46 EAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTAAAIAALALAGVYPDDEAVERGLEWILS 104 (109)
T ss_dssp BSSHHHHHHHHH---TTS--S-TS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 56788888885 66667767665321 11111122222 23789999999885543
No 17
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=67.25 E-value=4.2 Score=39.36 Aligned_cols=60 Identities=3% Similarity=-0.229 Sum_probs=51.9
Q ss_pred CCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCC
Q 029692 2 PPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEI 61 (189)
Q Consensus 2 PpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i 61 (189)
++++++++.|++++.|.+++.-+.++.||.+....+.-.+.-..+.-.+.+.+...++.+
T Consensus 255 g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDly 314 (760)
T KOG0497|consen 255 GTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLY 314 (760)
T ss_pred CceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhcccccccc
Confidence 678999999999999999999999999999999999887766677777788887766554
No 18
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=66.76 E-value=1.3 Score=31.55 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=20.3
Q ss_pred HHHHHHHHH-hhcCCCCceeecC--CchHHHHHHHHh-cC--CCCHHHHHHHHhhccceEecCCceEEecCCCChhhHHH
Q 029692 111 LEIAINLIH-YEDEASRYMTIGC--VEKPLNMLCCWV-ED--PNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIP 184 (189)
Q Consensus 111 l~~a~~~i~-~e~~~t~~~~i~P--v~~~~nml~~l~-~~--~d~p~~~~~l~~l~~~l~~~~~g~~~Q~~~S~vWDTAl 184 (189)
|+++.+||. .|..++.|.+-.- ++.+...+.++. .+ ..++.++|+++=|.+-. .+||..-....+.+-.|+-
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q--~~dG~w~~~~~~~~~~t~~ 78 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQ--NPDGGWGYSGGEYVSMTAA 78 (109)
T ss_dssp ----------------------------------------TS-SSBSSHHHHHHHHH-----TTS--S-TS--HHHHHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHhc--CCCCCCCCcCCCCHHHHHH
Confidence 467788884 6666666654321 234444455555 33 46888999998777743 5677554445555656655
Q ss_pred hh
Q 029692 185 AI 186 (189)
Q Consensus 185 ~~ 186 (189)
++
T Consensus 79 ~~ 80 (109)
T PF13243_consen 79 AI 80 (109)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=65.82 E-value=19 Score=34.36 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHH-hhcCCCCceee---cCCchHHHHHHHHh-cC---CCCHHHHHHHHhhccceEecCCceEEe------
Q 029692 108 QKSLEIAINLIH-YEDEASRYMTI---GCVEKPLNMLCCWV-ED---PNSDYFKKHLARLGEYLWVGEDGMRVQ------ 173 (189)
Q Consensus 108 ~~Al~~a~~~i~-~e~~~t~~~~i---~Pv~~~~nml~~l~-~~---~d~p~~~~~l~~l~~~l~~~~~g~~~Q------ 173 (189)
+.++++|++|+. .|+.++.|.+- ..+-.+...+.++. .| .+++.++++++-|.+.. .+||-.-+
T Consensus 475 ~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q--~~DGgWge~~~s~~ 552 (634)
T cd02892 475 DPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQ--NPDGGWGESYLSYE 552 (634)
T ss_pred HHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcC--CCCCCCCCcccccc
Confidence 468999999996 55544544221 11124555677776 34 35789999999887764 34442211
Q ss_pred ------cCCCChhhHHHhhhcC
Q 029692 174 ------EKCVTLADNIPAILNL 189 (189)
Q Consensus 174 ------~~~S~vWDTAl~~~Al 189 (189)
+..|++=-||.++.||
T Consensus 553 ~~~~~~~~~s~~~~TA~AllaL 574 (634)
T cd02892 553 DKSYAGGGRSTVVQTAWALLAL 574 (634)
T ss_pred CcccCCCCCCcHHHHHHHHHHH
Confidence 2246666689888775
No 20
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=65.04 E-value=20 Score=34.23 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHH-hhcCCCCce---eecCCchHHHHHHHHh-cC---CCCHHHHHHHHhhccceEecCCce---------
Q 029692 108 QKSLEIAINLIH-YEDEASRYM---TIGCVEKPLNMLCCWV-ED---PNSDYFKKHLARLGEYLWVGEDGM--------- 170 (189)
Q Consensus 108 ~~Al~~a~~~i~-~e~~~t~~~---~i~Pv~~~~nml~~l~-~~---~d~p~~~~~l~~l~~~l~~~~~g~--------- 170 (189)
+.++++|++||. .|+.++.+. ++..+..+...+.+|. .| .+++.++++++-|.+-. .+||-
T Consensus 459 ~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q--~~DGGWge~~~s~~ 536 (621)
T TIGR01787 459 RNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQ--MPDGGWGEDCFSYE 536 (621)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhc--CCCCCCCcCCcccc
Confidence 378999999996 554444432 2222234556666666 34 35699999999877653 23332
Q ss_pred ---EEecCCCChhhHHHhhhcC
Q 029692 171 ---RVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 171 ---~~Q~~~S~vWDTAl~~~Al 189 (189)
+.....|++=-||+++.||
T Consensus 537 ~~~y~~~~~S~~s~Ta~AL~AL 558 (621)
T TIGR01787 537 DPSYVGSGGSTPSQTGWALMAL 558 (621)
T ss_pred ccccCCCCCCCHHHHHHHHHHH
Confidence 1121257777789888875
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=56.66 E-value=43 Score=26.87 Aligned_cols=82 Identities=16% Similarity=0.008 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCceeecCC-----------chHHHHHHHHh-cC-C-CCHHHHHHHHhhccceEecCCce
Q 029692 106 LRQKSLEIAINLIH-YEDEASRYMTIGCV-----------EKPLNMLCCWV-ED-P-NSDYFKKHLARLGEYLWVGEDGM 170 (189)
Q Consensus 106 lR~~Al~~a~~~i~-~e~~~t~~~~i~Pv-----------~~~~nml~~l~-~~-~-d~p~~~~~l~~l~~~l~~~~~g~ 170 (189)
.-..+++++.+|+. .+..+++|.+..+. ..+.+++.++. .+ . +++.+.++++-|.+-. .+||-
T Consensus 101 ~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q--~~~g~ 178 (300)
T cd00688 101 VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQ--NYDGG 178 (300)
T ss_pred cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHh--cCCCC
Confidence 33467888888885 55566666655432 23566677776 44 2 3667777777666553 23443
Q ss_pred EEecCCCChhhHHHhhhcC
Q 029692 171 RVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 171 ~~Q~~~S~vWDTAl~~~Al 189 (189)
......+...-|+.++.||
T Consensus 179 ~~~~~~~~~~~t~~~~~aL 197 (300)
T cd00688 179 FGPGGESHGYGTACAAAAL 197 (300)
T ss_pred cCCCccccHHHHHHHHHHH
Confidence 3333367788888888775
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=51.90 E-value=51 Score=26.46 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHH-hhcCCCCceeecC-----CchHHHHHHHHh-cCC----CCHHHHHHHHhhccceEecCCceE--Ee
Q 029692 107 RQKSLEIAINLIH-YEDEASRYMTIGC-----VEKPLNMLCCWV-EDP----NSDYFKKHLARLGEYLWVGEDGMR--VQ 173 (189)
Q Consensus 107 R~~Al~~a~~~i~-~e~~~t~~~~i~P-----v~~~~nml~~l~-~~~----d~p~~~~~l~~l~~~l~~~~~g~~--~Q 173 (189)
-+..++++++|+. .+..+++|+.... +..+...+.++. .+. +.+.++++++-|.+.. .+||-. ..
T Consensus 50 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q--~~dG~~~~~~ 127 (300)
T cd00688 50 ADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQ--NEDGGFREDG 127 (300)
T ss_pred chHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHcc--CCCCCeeeec
Confidence 4467888888885 5566666765432 234566666666 332 4555666666555542 334422 22
Q ss_pred cC-------CCChhhHHHhhhcC
Q 029692 174 EK-------CVTLADNIPAILNL 189 (189)
Q Consensus 174 ~~-------~S~vWDTAl~~~Al 189 (189)
+. .+.+-.|+.++.||
T Consensus 128 ~~~~~~~~~~~~~~~t~~al~aL 150 (300)
T cd00688 128 PGNHRIGGDESDVRLTAYALIAL 150 (300)
T ss_pred CCCCcccCCCCcccHHHHHHHHH
Confidence 22 56788888887764
No 23
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=51.69 E-value=36 Score=29.09 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCceeecC----------------CchHHHHHHHHhcC--CC-------CHHHHHHHHhh
Q 029692 106 LRQKSLEIAINLIH-YEDEASRYMTIGC----------------VEKPLNMLCCWVED--PN-------SDYFKKHLARL 159 (189)
Q Consensus 106 lR~~Al~~a~~~i~-~e~~~t~~~~i~P----------------v~~~~nml~~l~~~--~d-------~p~~~~~l~~l 159 (189)
+-+.+++++++|+. +|..+++|..-+| +.-+.+.+.+|.+. .+ .+.+.|+++-|
T Consensus 100 v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL 179 (297)
T cd02896 100 VDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYL 179 (297)
T ss_pred CCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHH
Confidence 34578899999995 6666666654433 23345667777642 21 23566666544
Q ss_pred ccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 160 GEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
.+- |.....+=.+|++++||
T Consensus 180 ~~~----------~~~~~~~Y~~Al~ayAL 199 (297)
T cd02896 180 ENQ----------LPNLQRPYALAITAYAL 199 (297)
T ss_pred HHh----------cccCCChHHHHHHHHHH
Confidence 431 22234556688888775
No 24
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=50.30 E-value=9.7 Score=32.71 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHHHHHHHH-hhcCCCCceee-cCCchHHHHHHHHhc-C---CCCHHHHHHHHhhcc
Q 029692 111 LEIAINLIH-YEDEASRYMTI-GCVEKPLNMLCCWVE-D---PNSDYFKKHLARLGE 161 (189)
Q Consensus 111 l~~a~~~i~-~e~~~t~~~~i-~Pv~~~~nml~~l~~-~---~d~p~~~~~l~~l~~ 161 (189)
++++++|+. .|...++|+.- .++.-+..++.++.. + +....++|+++=|.+
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~ 57 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEYSQVWDTALALQALLEAGLAPEFDPALKKALEWLLK 57 (348)
T ss_pred CchHHHHHHHhccCCCCccccCCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHh
Confidence 357788885 66666777543 344445566666662 3 356777887764443
No 25
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=45.56 E-value=26 Score=24.56 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=36.4
Q ss_pred HHHHH-hhcCCCCceee---cCCchHHHHHHHHh-cC--CCCHHHHHHHHhhccceEecCCceEEec--CCCChhhHHHh
Q 029692 115 INLIH-YEDEASRYMTI---GCVEKPLNMLCCWV-ED--PNSDYFKKHLARLGEYLWVGEDGMRVQE--KCVTLADNIPA 185 (189)
Q Consensus 115 ~~~i~-~e~~~t~~~~i---~Pv~~~~nml~~l~-~~--~d~p~~~~~l~~l~~~l~~~~~g~~~Q~--~~S~vWDTAl~ 185 (189)
++||. .|.++++|+.- ..+..+...+.+|. .+ ++...++ +++=|.+-. ..++|..-.+ -.+.++.|+.+
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~-~~~~L~~~q-~~dGg~~~~~~~~~~~~~~t~~~ 78 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEPDRDRAA-AVEWLLSQQ-NPDGGWGSNPDGGPPDVYTTYVA 78 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHHCHHHHH-HHHHHHHHB--TTSGBBSSTTTT-BSHHHHHHH
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCcccHHHHH-HHHHHHHhC-CCCCCccCCCCCCCccHHHHHHH
Confidence 46774 66777778762 22224455566666 34 3422231 255444432 2233333333 25679999888
Q ss_pred hhcC
Q 029692 186 ILNL 189 (189)
Q Consensus 186 ~~Al 189 (189)
+.+|
T Consensus 79 l~~l 82 (113)
T PF13249_consen 79 LAAL 82 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 26
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=41.92 E-value=68 Score=27.08 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=28.9
Q ss_pred CchHHHHHHHHh-cC-CCCHHHHHHHHhhccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692 133 VEKPLNMLCCWV-ED-PNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 133 v~~~~nml~~l~-~~-~d~p~~~~~l~~l~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al 189 (189)
|..+.++++++. .+ ++.+...+.++-|.+- .+.+| +.+|+= ||++++.||
T Consensus 238 ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~--q~~~G----gf~sTQ-dt~~al~AL 289 (292)
T cd02897 238 VEMTAYALLALLSAGGEDLAEALPIVKWLAKQ--RNSLG----GFSSTQ-DTVVALQAL 289 (292)
T ss_pred HHHHHHHHHHHHHcCCccHhHHHHHHHHHHHc--CCCCC----CcccHH-HHHHHHHHH
Confidence 456778888887 44 3555555555533332 23344 233322 999999886
No 27
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=40.68 E-value=8.8 Score=29.67 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=10.4
Q ss_pred ceEEecCCCChh
Q 029692 169 GMRVQEKCVTLA 180 (189)
Q Consensus 169 g~~~Q~~~S~vW 180 (189)
..+++||.||||
T Consensus 50 ~~~V~GCqS~VW 61 (138)
T TIGR03391 50 ATELTGCENRVW 61 (138)
T ss_pred hhccCCccccee
Confidence 366899999999
No 28
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.43 E-value=42 Score=25.72 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhccccCCCChHHHHHHHHHH-HHHHHhhcCCCCcee----ecCCchHHHHHHHHh
Q 029692 83 QNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIA-INLIHYEDEASRYMT----IGCVEKPLNMLCCWV 144 (189)
Q Consensus 83 ~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~a-~~~i~~e~~~t~~~~----i~Pv~~~~nml~~l~ 144 (189)
+...|+-||+.|...+.+. ..+=|++|++++ -.||..+|.+...++ =||+.+|.+.-|.+.
T Consensus 46 ~~~aDa~LN~AY~~ll~~l-~~~~~~~aL~kaQRAWi~fRDadC~~~~~~~~ggs~~~~~~~~C~~d 111 (127)
T COG3755 46 YQAADAELNKAYKALLKRL-QDSPRTKALQKAQRAWIAFRDADCALIKSQLDGGSIAPMEVLSCLLD 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhhHhHHHHhhcccCCCcchHHHHHHHHH
Confidence 4677888877787665433 223456689999 889976665554433 234344555544443
No 29
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.73 E-value=11 Score=29.57 Aligned_cols=11 Identities=9% Similarity=-0.260 Sum_probs=9.5
Q ss_pred eEEecCCCChh
Q 029692 170 MRVQEKCVTLA 180 (189)
Q Consensus 170 ~~~Q~~~S~vW 180 (189)
-.++||.||||
T Consensus 51 n~V~GC~S~vw 61 (144)
T COG2166 51 NPVPGCQSQVW 61 (144)
T ss_pred cCCCcccccee
Confidence 45899999999
No 30
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=35.84 E-value=13 Score=28.74 Aligned_cols=11 Identities=9% Similarity=-0.221 Sum_probs=9.9
Q ss_pred eEEecCCCChh
Q 029692 170 MRVQEKCVTLA 180 (189)
Q Consensus 170 ~~~Q~~~S~vW 180 (189)
.+++||.||||
T Consensus 46 ~~V~GCqS~VW 56 (138)
T PRK09296 46 NLIQGCQSQVW 56 (138)
T ss_pred ccCCCccccee
Confidence 56899999999
No 31
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=31.91 E-value=1.3e+02 Score=24.71 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCceeecC---Cch--HHHHHHHHh----cC-CCCHHHHHHHHhhccce
Q 029692 106 LRQKSLEIAINLIH-YEDEASRYMTIGC---VEK--PLNMLCCWV----ED-PNSDYFKKHLARLGEYL 163 (189)
Q Consensus 106 lR~~Al~~a~~~i~-~e~~~t~~~~i~P---v~~--~~nml~~l~----~~-~d~p~~~~~l~~l~~~l 163 (189)
-.+..++.+++++. +|..+|+|+.... -+. +.+.+.+|. .+ .+++.+.|+++-+....
T Consensus 46 ~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q 114 (282)
T cd02891 46 KALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQ 114 (282)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 45677788888885 6777777865522 122 334444444 23 46778999998777663
No 32
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=31.57 E-value=21 Score=26.92 Aligned_cols=13 Identities=15% Similarity=-0.117 Sum_probs=10.1
Q ss_pred CceEEecCCCChh
Q 029692 168 DGMRVQEKCVTLA 180 (189)
Q Consensus 168 ~g~~~Q~~~S~vW 180 (189)
|...++||.|+||
T Consensus 35 ~~~~V~GC~S~vW 47 (125)
T PF02657_consen 35 DENLVHGCQSQVW 47 (125)
T ss_dssp CCEEETSSSS-EE
T ss_pred ccccCCCCcccee
Confidence 4567999999999
No 33
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=31.22 E-value=35 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=27.0
Q ss_pred CHHHHHHHHhhccceEecCCceE--EecC-CCChhhHHHhhhcC
Q 029692 149 SDYFKKHLARLGEYLWVGEDGMR--VQEK-CVTLADNIPAILNL 189 (189)
Q Consensus 149 ~p~~~~~l~~l~~~l~~~~~g~~--~Q~~-~S~vWDTAl~~~Al 189 (189)
...++++++++.++- ..||-. -.+. .|.+|+|++++.+|
T Consensus 48 ~~~i~~~~~~l~~~Q--~~dGgf~~w~~~~~~~~~~Ta~~~~~L 89 (282)
T cd02891 48 LEYIRKGYQRLLTYQ--RSDGSFSAWGNSDSGSTWLTAYVVKFL 89 (282)
T ss_pred HHHHHHHHHHHHhhc--CCCCCccccCCCCCCchHHHHHHHHHH
Confidence 345777888888774 345422 2445 88999999998875
No 34
>PRK15019 CsdA-binding activator; Provisional
Probab=28.77 E-value=20 Score=28.05 Aligned_cols=11 Identities=0% Similarity=-0.266 Sum_probs=9.8
Q ss_pred eEEecCCCChh
Q 029692 170 MRVQEKCVTLA 180 (189)
Q Consensus 170 ~~~Q~~~S~vW 180 (189)
-.++||.||||
T Consensus 56 ~~V~GCqS~VW 66 (147)
T PRK15019 56 KEIAGCENRVW 66 (147)
T ss_pred CcCCCccccee
Confidence 56899999999
No 35
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=26.07 E-value=72 Score=28.89 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=39.2
Q ss_pred CCCCCcCcchh----hhhhhhhhHHhHhhcccc-----ccCChhhhhHhhhhccCCCCCC
Q 029692 11 FLPISPGKLLC----YCRLTYLPMSYLYGKRFV-----GPITSLILQLREEIYTQPYSEI 61 (189)
Q Consensus 11 w~P~~~~~~s~----w~R~v~vPl~~l~~~r~~-----~~~~p~~~~lr~EL~~~~~~~i 61 (189)
-.|++.++++. -=|.+++.+.++..+|+- .|.-|++.+-||-||++..+.|
T Consensus 311 iipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGhFGPI 370 (467)
T KOG4505|consen 311 IIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHFGPI 370 (467)
T ss_pred ccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhccCCCc
Confidence 34555555551 238999999999999975 6778999999999998876655
No 36
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=25.42 E-value=2.3e+02 Score=23.36 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHh---cCCCCHHHHHHHHhhccceEecCCceEEecC
Q 029692 105 KLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWV---EDPNSDYFKKHLARLGEYLWVGEDGMRVQEK 175 (189)
Q Consensus 105 ~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~---~~~d~p~~~~~l~~l~~~l~~~~~g~~~Q~~ 175 (189)
..-+.++++|.++++.+.++..- .=--+|+++. .+ +++.-.+.++.|+.....++++.+=+..
T Consensus 109 ~~~~~~i~kA~~~L~~~~~~~~~-------~Y~lAl~aYAL~la~-~~~~~~~~~~~L~~~a~~~~~~~~W~~~ 174 (246)
T PF07678_consen 109 PEYENAINKALNYLERHLDNIQD-------PYTLALVAYALALAG-DSPQASKLLNKLNSMATTEGGLRYWSSD 174 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHGCTSS-------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHCHCEETTTTCEE-SS
T ss_pred hhhHHHHHHHHHHHHHhccccCC-------HHHHHHHHHHHHhhc-ccchHHHHHHHHHHhhhhccccCcccCC
Confidence 45578999999999754222111 1112233333 34 8999999999999998877666665554
No 37
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=19 Score=29.75 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=6.2
Q ss_pred CCChhhHH
Q 029692 176 CVTLADNI 183 (189)
Q Consensus 176 ~S~vWDTA 183 (189)
--||||||
T Consensus 59 KlQIWDTA 66 (205)
T KOG0084|consen 59 KLQIWDTA 66 (205)
T ss_pred EEEeeecc
Confidence 45689998
No 38
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=21.22 E-value=80 Score=21.69 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHHHHH-HHHHHhhcCCCCceeecCCc-hHHHHHHHHhc----C-CCCHHHHHHHHhhccc
Q 029692 105 KLRQKSLEIA-INLIHYEDEASRYMTIGCVE-KPLNMLCCWVE----D-PNSDYFKKHLARLGEY 162 (189)
Q Consensus 105 ~lR~~Al~~a-~~~i~~e~~~t~~~~i~Pv~-~~~nml~~l~~----~-~d~p~~~~~l~~l~~~ 162 (189)
.+++.|.+.+ ++||+.+. .- -++|+- +..|+.+...+ | .....|+++++.|+..
T Consensus 12 aih~aA~~Laal~~idq~~-Ar---~l~~~AEavAnlfmv~fyQAeTgrAT~~DF~eAm~~Irq~ 72 (74)
T PF12703_consen 12 AIHQAAAQLAALDFIDQET-AR---QLSPMAEAVANLFMVVFYQAETGRATQEDFREAMSAIRQA 72 (74)
T ss_pred HHHHHHHHHHHHHHhCHHH-HH---HHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHh
Confidence 3555666654 99997331 11 233333 66677666652 3 4567799999988754
No 39
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.29 E-value=24 Score=29.35 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=6.4
Q ss_pred CCChhhHH
Q 029692 176 CVTLADNI 183 (189)
Q Consensus 176 ~S~vWDTA 183 (189)
.=|+||||
T Consensus 72 rLQlWDTA 79 (221)
T KOG0094|consen 72 RLQLWDTA 79 (221)
T ss_pred EEEEEecc
Confidence 55789997
No 40
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.02 E-value=2.9e+02 Score=19.55 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhhccce
Q 029692 103 LNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYL 163 (189)
Q Consensus 103 ~~~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l~~~l 163 (189)
..++|..|+..--+.|+..+ ....-+.+.+..+.....++||-.+-.+++++..+.
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~-----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS-----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA 71 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC-----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 34588888888888887332 111111244444444445678888888877776553
Done!