Query 029692
Match_columns 189
No_of_seqs 110 out of 595
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:15:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029692.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2314-2317//hhsearch_pdb/029692hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 1.0 1 1 370.5 13.3 184 1-189 211-396 (732)
2 2sqc_A Squalene-hopene cyclase 1.0 1 1 302.6 13.4 170 1-189 148-321 (631)
3 2sqc_A Squalene-hopene cyclase 1.0 1 1 46.0 2.0 86 104-189 280-385 (631)
4 2h6f_B Protein farnesyltransfe 1.0 1 1 19.0 2.7 20 110-129 122-142 (437)
5 1gxm_A Pectate lyase; mechanis 1.0 1 1 18.9 3.4 81 104-184 92-209 (332)
6 1r76_A Pectate lyase; A-helica 1.0 1 1 18.1 4.4 59 105-163 171-258 (408)
7 1wlo_A SUFE protein; structura 1.0 1 1 17.7 0.5 16 104-119 112-127 (136)
8 3g0m_A Cysteine desulfuration 1.0 1 1 17.5 -0.1 17 103-119 118-134 (141)
9 1qqf_A Protein (complement C3D 1.0 1 1 17.4 4.7 77 78-161 65-169 (277)
10 2wy7_A Complement C3D fragment 1.0 1 1 17.3 4.5 72 108-189 104-203 (310)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=1.00 E-value=1 Score=370.53 Aligned_cols=184 Identities=34% Similarity=0.691 Sum_probs=176.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99842226998999967400420013465786741652456871566676542049988886010156788657789716
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
||||+||||+|||||||+||||||+|++||+|++++||+++.+|.+.+||+|||++||++|+|..+|+.++++|.|+|++
T Consensus 211 ~PpE~~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~ 290 (732)
T 1w6k_A 211 LFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHS 290 (732)
T ss_dssp CCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCC
T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHH
T ss_conf 99899975575777789999999999872798852487777884155688985579844366444225556556668789
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH-CCCCCHHHHHHHHHH
Q ss_conf 9999999997553210135899938999999999988773208887101168824788889874-288999999999852
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWV-EDPNSDYFKKHLARL 159 (189)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~A~~~a~~~i~~e~~~t~~~~i~Pv~~~~nmi~~l~-~~~d~p~~~~~l~~l 159 (189)
++|..++++| +.+|+++ ++++|++|++++++||++|+++|+|+||+||++++||++||. .|+|||.|++|++++
T Consensus 291 ~~~~~~~~~l-~~~e~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l 365 (732)
T 1w6k_A 291 WLLRVVYALL-NLYEHHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRI 365 (732)
T ss_dssp HHHHHHHHHH-HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTS
T ss_pred HHHHHHHHHH-HHHHHCC----CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999999999-8866128----5899999999999999961557887656414899999999986099978999999999
Q ss_pred CCCEEECCCCEEEECC-CCCHHHHHHHHHCC
Q ss_conf 1251862894488349-99842488863029
Q 029692 160 GEYLWVGEDGMRVQEK-CVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~~q~~-~S~vWDTAl~~~al 189 (189)
++|+|+++|||++|+| |||||||||++.||
T Consensus 366 ~~~l~~~~dG~~~q~~~gs~vwdTalal~AL 396 (732)
T 1w6k_A 366 PDYLWMGLDGMKMQGTNGSQIWDTAFAIQAL 396 (732)
T ss_dssp GGGEEEETTEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHHEECCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 8764467998650798888459999999999
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=1.00 E-value=1 Score=302.65 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=153.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99842226998999967400420013465786741652456871566676542049988886010156788657789716
Q 029692 1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT 80 (189)
Q Consensus 1 iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~ 80 (189)
+|||+||||+||||||++||||+|+|++||+||+++||++++++.+ +| +|||++||++|+|.. +.+++
T Consensus 148 ~p~e~~llp~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~ 215 (631)
T 2sqc_A 148 VPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGG 215 (631)
T ss_dssp CCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCC
T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CH-HHHCCCCCCCCCCCC----------CCCHH
T ss_conf 8888998266566577676788888897699996278766899988-78-985578932247443----------35579
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEECCCCHHHHHHHHHH-CC-CCCHHHHHHHH
Q ss_conf 9999999997553210135899938999999999988773208887-101168824788889874-28-89999999998
Q 029692 81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASR-YMTIGCVEKPLNMLCCWV-ED-PNSDYFKKHLA 157 (189)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~A~~~a~~~i~~e~~~t~-~~~i~Pv~~~~nmi~~l~-~~-~d~p~~~~~l~ 157 (189)
+++..+++.| +.++++ +++++|++|++++++||+.++++++ +++|+| +++|+++|+. .| ++||.+++|++
T Consensus 216 ~~~~~~~~~l-~~~~~~----~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p--~~~~~~~~l~~~g~~~~~~~~~~~~ 288 (631)
T 2sqc_A 216 WIFDALDRAL-HGYQKL----SVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--PWFYALIALKILDMTQHPAFIKGWE 288 (631)
T ss_dssp HHHHHHHHHH-HHHHHS----SCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHH--HHHHHHHHHHHTTCTTSHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHCC----CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999998-876437----96778999999999999998727998141047--9999999999768999999999999
Q ss_pred HHCCCEEECCC-CEEEECCCCCHHHHHHHHHCC
Q ss_conf 52125186289-448834999842488863029
Q 029692 158 RLGEYLWVGED-GMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 158 ~l~~~l~~~~~-g~~~q~~~S~vWDTAl~~~al 189 (189)
++++|+|+++| ||++|+|+|||||||+++.||
T Consensus 289 ~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL 321 (631)
T 2sqc_A 289 GLELYGVELDYGGWMFQASISPVWDTGLAVLAL 321 (631)
T ss_dssp GGGGGEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHCEEECCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 998503784899565379888388999999999
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=1.00 E-value=1 Score=46.02 Aligned_cols=86 Identities=13% Similarity=-0.072 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCE--EECCCCHHHHHHHHHH-CC-C-CCHHHHHHHHHHCCCEEECCCC-EEEECCCC
Q ss_conf 3899999999998877320888710--1168824788889874-28-8-9999999998521251862894-48834999
Q 029692 104 NKLRQKSLEIAINLIHYEDEASRYM--TIGCVEKPLNMLCCWV-ED-P-NSDYFKKHLARLGEYLWVGEDG-MRVQEKCV 177 (189)
Q Consensus 104 ~~lr~~A~~~a~~~i~~e~~~t~~~--~i~Pv~~~~nmi~~l~-~~-~-d~p~~~~~l~~l~~~l~~~~~g-~~~q~~~S 177 (189)
.+..++++++..+.+-.+++++-+. +..||=-+..++.++. .| + ++|.++++++-|++..+...++ ..+++++|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s 359 (631)
T 2sqc_A 280 HPAFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLK 359 (631)
T ss_dssp SHHHHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSC
T ss_pred CHHHHHHHHHHHHCEEECCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf 99999999999850378489956537988838899999999998699978899999999999835888997233068778
Q ss_pred C--------------HHHHHHHHHCC
Q ss_conf 8--------------42488863029
Q 029692 178 T--------------LADNIPAILNL 189 (189)
Q Consensus 178 ~--------------vWDTAl~~~al 189 (189)
+ +||||+++.||
T Consensus 360 ~GgW~f~~~~~~~p~v~dTA~al~AL 385 (631)
T 2sqc_A 360 PGGFAFQFDNVYYPDVCDTAVVVWAL 385 (631)
T ss_dssp CCCBCSSSSCTTCCBHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99886666788899657799999999
No 4
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=1.00 E-value=1 Score=18.95 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=8.2
Q ss_pred HHHHHHHHHH-HHCCCCCCEE
Q ss_conf 9999998877-3208887101
Q 029692 110 SLEIAINLIH-YEDEASRYMT 129 (189)
Q Consensus 110 A~~~a~~~i~-~e~~~t~~~~ 129 (189)
..+++.+||. .|..+++|++
T Consensus 122 ~~~r~v~~l~s~Q~~dGGf~g 142 (437)
T 2h6f_B 122 VATDVCQFLELCQSPEGGFGG 142 (437)
T ss_dssp HHHHHHHHHHHHBCTTSSBBS
T ss_pred HHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999983899998378
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=1.00 E-value=1 Score=18.91 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHH-HHCCCCCCEEECCCC------------HHHHHHHHHH---CC---------------CCCHHH
Q ss_conf 3899999999998877-320888710116882------------4788889874---28---------------899999
Q 029692 104 NKLRQKSLEIAINLIH-YEDEASRYMTIGCVE------------KPLNMLCCWV---ED---------------PNSDYF 152 (189)
Q Consensus 104 ~~lr~~A~~~a~~~i~-~e~~~t~~~~i~Pv~------------~~~nmi~~l~---~~---------------~d~p~~ 152 (189)
..-.+.|++++.+||. +|-.||+|+...|-+ .|.+.|-+|. .+ ..++++
T Consensus 92 ~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av 171 (332)
T 1gxm_A 92 NTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAV 171 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 26789999999999996227899864537775566556770418999999999999733477531003430246669999
Q ss_pred HHHHHHHCCCEEECCC--C----EEEECCCCCHHHHHH
Q ss_conf 9999852125186289--4----488349998424888
Q 029692 153 KKHLARLGEYLWVGED--G----MRVQEKCVTLADNIP 184 (189)
Q Consensus 153 ~~~l~~l~~~l~~~~~--g----~~~q~~~S~vWDTAl 184 (189)
+|+++=|.+-...... | -|..+|.+|+|--++
T Consensus 172 ~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARay 209 (332)
T 1gxm_A 172 TKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAY 209 (332)
T ss_dssp HHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTT
T ss_pred HHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 99999999864722899673342166142662111234
No 6
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=1.00 E-value=1 Score=18.09 Aligned_cols=59 Identities=5% Similarity=-0.085 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHH-HHCCCCCCEEECCCC------------HHHHHHHHHH---CC-------------CCCHHHHHH
Q ss_conf 899999999998877-320888710116882------------4788889874---28-------------899999999
Q 029692 105 KLRQKSLEIAINLIH-YEDEASRYMTIGCVE------------KPLNMLCCWV---ED-------------PNSDYFKKH 155 (189)
Q Consensus 105 ~lr~~A~~~a~~~i~-~e~~~t~~~~i~Pv~------------~~~nmi~~l~---~~-------------~d~p~~~~~ 155 (189)
.--+.|++++.+||. +|-.||+|+...|-| .|.+.|-+|. .+ ..++.++|+
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rg 250 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAA 250 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77999999999999970178998767576534554577858578999999999997135753223425566679999999
Q ss_pred HHHHCCCE
Q ss_conf 98521251
Q 029692 156 LARLGEYL 163 (189)
Q Consensus 156 l~~l~~~l 163 (189)
++=|.+-.
T Consensus 251 i~~Ll~~Q 258 (408)
T 1r76_A 251 IHCIVETQ 258 (408)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
T ss_conf 99999850
No 7
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=1.00 E-value=1 Score=17.67 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3899999999998877
Q 029692 104 NKLRQKSLEIAINLIH 119 (189)
Q Consensus 104 ~~lr~~A~~~a~~~i~ 119 (189)
++.|..++....+.|+
T Consensus 112 SpsR~nGl~am~~~ik 127 (136)
T 1wlo_A 112 TPLRLRGLEAALLRLQ 127 (136)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8558899999999999
No 8
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=1.00 E-value=1 Score=17.52 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 93899999999998877
Q 029692 103 LNKLRQKSLEIAINLIH 119 (189)
Q Consensus 103 ~~~lr~~A~~~a~~~i~ 119 (189)
.++.|..++....+.|+
T Consensus 118 LSpsR~nGl~am~~~ik 134 (141)
T 3g0m_A 118 LTPSRSQGLEAMIRAIR 134 (141)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 18538899999999999
No 9
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=1.00 E-value=1 Score=17.44 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--HHCCCCCCEEECCCC-----------------HHHH
Q ss_conf 716999999999755321013589993899999999998877--320888710116882-----------------4788
Q 029692 78 PHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIH--YEDEASRYMTIGCVE-----------------KPLN 138 (189)
Q Consensus 78 p~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~A~~~a~~~i~--~e~~~t~~~~i~Pv~-----------------~~~n 138 (189)
+..|+-..+-.+|.. ..... .+-+..++++.+|+. .|..++.|.+.+++. -+.+
T Consensus 65 ~s~wlTa~v~~~l~~-a~~~~------~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~ 137 (277)
T 1qqf_A 65 PSTWLTAYVSRVFSL-AANLI------AIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAF 137 (277)
T ss_dssp CCHHHHHHHHHHHHH-HTTTS------CCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHCC------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHH
T ss_conf 509999999999999-76317------88999999999999984158899846776633664317877776675340799
Q ss_pred HHHHHH-C------C--CCCHHHHHHHHHHCC
Q ss_conf 889874-2------8--899999999985212
Q 029692 139 MLCCWV-E------D--PNSDYFKKHLARLGE 161 (189)
Q Consensus 139 mi~~l~-~------~--~d~p~~~~~l~~l~~ 161 (189)
.++++. . + +.++.++++++-+.+
T Consensus 138 vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 138 VLIALQEARDICEGQVNSLPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999961330146777407999999999998
No 10
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=1.00 E-value=1 Score=17.26 Aligned_cols=72 Identities=11% Similarity=-0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--HHCCCCCCEEECCCCH-----------------HHHHHHHHH-C------C--CCCHHHHHHHHHH
Q ss_conf 999999998877--3208887101168824-----------------788889874-2------8--8999999999852
Q 029692 108 QKSLEIAINLIH--YEDEASRYMTIGCVEK-----------------PLNMLCCWV-E------D--PNSDYFKKHLARL 159 (189)
Q Consensus 108 ~~A~~~a~~~i~--~e~~~t~~~~i~Pv~~-----------------~~nmi~~l~-~------~--~d~p~~~~~l~~l 159 (189)
+..++++.+|+. .|..++.|.+.+++.. +.+.++++. . + ..++.++++++-+
T Consensus 104 ~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 183 (310)
T 2wy7_A 104 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 183 (310)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999985168999621577744775417766666665222799999998510201467763379999999999
Q ss_pred CCCEEECCCCEEEECCCCCHHHHHHHHHCC
Q ss_conf 125186289448834999842488863029
Q 029692 160 GEYLWVGEDGMRVQEKCVTLADNIPAILNL 189 (189)
Q Consensus 160 ~~~l~~~~~g~~~q~~~S~vWDTAl~~~al 189 (189)
.+- |......|..|++++||
T Consensus 184 ~~~----------~~~~~~~y~~a~~ayAL 203 (310)
T 2wy7_A 184 EAN----------YMNLQRSYTVAIAGYAL 203 (310)
T ss_dssp HHH----------GGGCCCHHHHHHHHHHH
T ss_pred HHH----------HHCCCCHHHHHHHHHHH
T ss_conf 987----------40369889999999999
Done!