Query 029695
Match_columns 189
No_of_seqs 129 out of 1308
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 18:30:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029695.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2314-2317//hhsearch_pdb/029695hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 1.0 1 1 181.0 14.5 175 1-176 1-187 (192)
2 1rut_X Flinc4, fusion protein 1.0 1 1 166.7 5.9 131 5-173 3-139 (188)
3 2xjy_A Rhombotin-2; oncoprotei 1.0 1 1 164.4 7.6 124 7-168 2-131 (131)
4 2xqn_T Testin, TESS; metal-bin 1.0 1 1 159.1 8.1 121 6-164 2-125 (126)
5 2rgt_A Fusion of LIM/homeobox 1.0 1 1 155.1 9.7 125 5-168 4-131 (169)
6 2jtn_A LIM domain-binding prot 1.0 1 1 154.5 10.8 122 4-164 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 1.0 1 1 130.6 7.6 98 4-139 2-101 (101)
8 1m3v_A FLIN4, fusion of the LI 1.0 1 1 127.8 5.9 116 4-171 2-121 (122)
9 1j2o_A FLIN2, fusion of rhombo 1.0 1 1 113.5 6.9 112 5-172 1-114 (114)
10 2ehe_A Four and A half LIM dom 1.0 1 1 107.3 2.6 79 53-169 1-80 (82)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=1.00 E-value=1 Score=181.03 Aligned_cols=175 Identities=27% Similarity=0.557 Sum_probs=135.2
Q ss_pred CCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCC---
Q ss_conf 99888877543467200036218738930134674344565657789821259931132017765257777778988---
Q 029695 1 MSFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQ--- 77 (189)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~--- 77 (189)
|+..++.++|..|++.|+.++.+.++++.||++||+|..|+.+|....|+.+++.+||+.||.++|++++.......
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCEECCEEEEEECCCEECCCCCCCCCCCCCCCCCEEEECCCEEECHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 98778888374579830220189828944257788270419937998468269986384555766286666555546547
Q ss_pred -----CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf -----898776778965---558966545567899887986796532463110247322212610165788888998001
Q 029695 78 -----SPAKSAEKLTPE---LTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAA 149 (189)
Q Consensus 78 -----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 149 (189)
+.....+..... ........ ....++.++|..|+++|.+.+.|.+.++.||++||+|..|+.+|....|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRM-AQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEECCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf 3488851234666556667777676422-545698885889999845767993379830331598601199879984356
Q ss_pred CCCCCCCHHHHHHHHCCCCC-CCCCCCC
Q ss_conf 29900428688736369989-7743680
Q 029695 150 LEGILYCKHHFSQLFKEKGS-YNHLIKS 176 (189)
Q Consensus 150 ~~g~~~C~~c~~~~f~~k~~-~~~~~~~ 176 (189)
.+|.+||..||.++|+++|. +.+++..
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFGQGAGA 187 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCCCCCCC
T ss_pred CCCEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 3999838778887628857777986031
No 2
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=1.00 E-value=1 Score=166.66 Aligned_cols=131 Identities=22% Similarity=0.522 Sum_probs=116.2
Q ss_pred CCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 887754346720003621873893013467434456565778--982125993113201776525777777898889877
Q 029695 5 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKS 82 (189)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~ 82 (189)
...+.|..|++.|.....+.++++.||++||+|..|+.+|.. ..|+.+++.+||+.||.++|+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--------------- 67 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS---------------
T ss_pred CCCCCCCCCCCEECCCEEEEECCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC---------------
T ss_conf 78873725799807703598569676002856588886513589658976992114630101246---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCHH
Q ss_conf 677896555896654556789988--79867965324631-1024732221261016578888899-8001299004286
Q 029695 83 AEKLTPELTRSPSKAASMFSGTQE--KCASCSKTVYPLEK-VAVENQAYHKTCFKCSHGGCSISPS-NYAALEGILYCKH 158 (189)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~i~~~~~-i~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~~g~~~C~~ 158 (189)
+ +|..|+++|.+.+. +.+.++.||++||+|..|+..|..+ .|+..++.+||..
T Consensus 68 -----------------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~ 124 (188)
T 1rut_X 68 -----------------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124 (188)
T ss_dssp -----------------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGG
T ss_pred -----------------------CCCCCCCCCCCCCCCCEEEECCCCEEECCCCEECCCCCCCCCCCEEEEECCEEECHH
T ss_conf -----------------------677145689833367079983897782999949998989799995787899477788
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 887363699897743
Q 029695 159 HFSQLFKEKGSYNHL 173 (189)
Q Consensus 159 c~~~~f~~k~~~~~~ 173 (189)
||.++|++++.-..+
T Consensus 125 c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 125 DRPTALINGHLNSGG 139 (188)
T ss_dssp GCCTTTC--------
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 999986344646688
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=1.00 E-value=1 Score=164.40 Aligned_cols=124 Identities=24% Similarity=0.503 Sum_probs=111.6
Q ss_pred CCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 7754346720003621873893013467434456565778--98212599311320177652577777789888987767
Q 029695 7 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAE 84 (189)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
.++|..|++.|...+.+.++++.||++||+|..|+.+|.. ..|+.++|.+||..||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred CCCCCCCCCEECCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCEEEECCCHHHHCC-----------------
T ss_conf 663757999719808999789866488732172988036679868987998855683465278-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCC-CCEECCCCCCCCHHHH
Q ss_conf 7896555896654556789988--79867965324631-102473222126101657888889-9800129900428688
Q 029695 85 KLTPELTRSPSKAASMFSGTQE--KCASCSKTVYPLEK-VAVENQAYHKTCFKCSHGGCSISP-SNYAALEGILYCKHHF 160 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~i~~~~~-i~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~g~~~C~~c~ 160 (189)
+ +|..|+++|.+.+. +.+.++.||++||+|..|+.+|.. ..|+..++.+||..||
T Consensus 65 ---------------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~ 123 (131)
T 2xjy_A 65 ---------------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123 (131)
T ss_dssp ---------------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGH
T ss_pred ---------------------CCCCHHHCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCEEEEECCEEECHHHH
T ss_conf ---------------------86573246993476604676089617744733389899779799899989998768999
Q ss_pred HHHHCCCC
Q ss_conf 73636998
Q 029695 161 SQLFKEKG 168 (189)
Q Consensus 161 ~~~f~~k~ 168 (189)
.++|+++|
T Consensus 124 ~~~~~~~~ 131 (131)
T 2xjy_A 124 YEWTKING 131 (131)
T ss_dssp HHHHHHHC
T ss_pred HHHHHCCC
T ss_conf 99865059
No 4
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=1.00 E-value=1 Score=159.12 Aligned_cols=121 Identities=21% Similarity=0.528 Sum_probs=111.2
Q ss_pred CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87754346720003621873893013467434456565778982125993113201776525777777898889877677
Q 029695 6 TQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEK 85 (189)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~ 85 (189)
..++|..|++.|..++.+.++++.||++||+|..|+.+|.+..|+.++|.+||+.||.++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred CCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECHHHHCCCCC------------------
T ss_conf 68887468898278618941897725788996798999893998858998961589683858------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECCCCCCC--CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 89655589665455678998879867965324631-102473222--126101657888889980012990042868873
Q 029695 86 LTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEK-VAVENQAYH--KTCFKCSHGGCSISPSNYAALEGILYCKHHFSQ 162 (189)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~-i~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~ 162 (189)
++|..|+++|.+.+. +.+.++.|| ++||+|..|+.+|.+..|+..+|.+||..+|.+
T Consensus 64 --------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 64 --------------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp --------------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred --------------------CCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEECCHHHHHH
T ss_conf --------------------237141972776735997789770198898574789895599836848999816679661
Q ss_pred HH
Q ss_conf 63
Q 029695 163 LF 164 (189)
Q Consensus 163 ~f 164 (189)
+|
T Consensus 124 ~f 125 (126)
T 2xqn_T 124 RM 125 (126)
T ss_dssp SC
T ss_pred HC
T ss_conf 43
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=1.00 E-value=1 Score=155.13 Aligned_cols=125 Identities=24% Similarity=0.469 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 88775434672000362187389301346743445656577898212599311320177652577777789888987767
Q 029695 5 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAE 84 (189)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
.+.+.|..|++.|.....+.++++.||++||+|..|+.+|.... ++++|.+||+.||.++|+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCC-----------------
T ss_conf 98972301899307818799888488401376388998378887-635991136552012213-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCC-CEE-CCCCCCCCHHHHH
Q ss_conf 789655589665455678998879867965324631-1024732221261016578888899-800-1299004286887
Q 029695 85 KLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEK-VAVENQAYHKTCFKCSHGGCSISPS-NYA-ALEGILYCKHHFS 161 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~-i~~~~~~~H~~Cf~C~~C~~~l~~~-~~~-~~~g~~~C~~c~~ 161 (189)
++|..|+++|.+.+. +.+.+..||++||+|..|+..|..+ .|+ ..+|.+||..||.
T Consensus 66 ---------------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 66 ---------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp ---------------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred ---------------------CCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEECHHHHH
T ss_conf ---------------------21000245437870799768861861998199989898889965780599378877889
Q ss_pred HHHCCCC
Q ss_conf 3636998
Q 029695 162 QLFKEKG 168 (189)
Q Consensus 162 ~~f~~k~ 168 (189)
+++....
T Consensus 125 ~~~~~~~ 131 (169)
T 2rgt_A 125 TAKQGGS 131 (169)
T ss_dssp HHHHCC-
T ss_pred HHHHCCC
T ss_conf 9863357
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=154.51 Aligned_cols=122 Identities=25% Similarity=0.500 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 88877543467200036218738930134674344565657789821259931132017765257777778988898776
Q 029695 4 IGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSA 83 (189)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
....+.|..|++.|...+.+.++++.||+.||+|..|+.+|....| .++|.+||..||.++|+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCE-EECCEEEECCCCCCCCC----------------
T ss_conf 8889848147998468023776687676024766778886388866-67998034675444424----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCC-CEE-CCCCCCCCHHHH
Q ss_conf 7789655589665455678998879867965324631-1024732221261016578888899-800-129900428688
Q 029695 84 EKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEK-VAVENQAYHKTCFKCSHGGCSISPS-NYA-ALEGILYCKHHF 160 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~-i~~~~~~~H~~Cf~C~~C~~~l~~~-~~~-~~~g~~~C~~c~ 160 (189)
++|..|+++|.+.+. +.+.++.||++||+|..|+.+|..+ .|+ ..+|++||..||
T Consensus 120 ----------------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy 177 (182)
T 2jtn_A 120 ----------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177 (182)
T ss_dssp ----------------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred ----------------------CCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCEEECCCCEEECHHHH
T ss_conf ----------------------2113579965887668754899888079859999989889995578269977788799
Q ss_pred HHHH
Q ss_conf 7363
Q 029695 161 SQLF 164 (189)
Q Consensus 161 ~~~f 164 (189)
.++.
T Consensus 178 ~~~~ 181 (182)
T 2jtn_A 178 ETAK 181 (182)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9965
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=1.00 E-value=1 Score=130.61 Aligned_cols=98 Identities=20% Similarity=0.528 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCCEECC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8887754346720003-621873893013467434456565778982125993113201776525777777898889877
Q 029695 4 IGTQQKCKVCEKTVYP-VEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKS 82 (189)
Q Consensus 4 ~~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~ 82 (189)
+...++|..|++.|.. ++.+.++++.||++||+|..|+.+|.+..|+.+++.+||+.||.++++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--------------- 66 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS--------------- 66 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC---------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHCC---------------
T ss_conf 88898080419764588407998943821207943011987790942880997979668512118---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCCCCCCCCCCCC
Q ss_conf 6778965558966545567899887986796532463-11024732221261016578
Q 029695 83 AEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLE-KVAVENQAYHKTCFKCSHGG 139 (189)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~-~i~~~~~~~H~~Cf~C~~C~ 139 (189)
++|..|+++|.+.+ .+.+.++.||++||+|..|+
T Consensus 67 -----------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 -----------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -----------------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred -----------------------CCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCC
T ss_conf -----------------------96634788222087179869956688678888898
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=1.00 E-value=1 Score=127.78 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=99.2
Q ss_pred CCCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8887754346720003621873893013467434456565778--98212599311320177652577777789888987
Q 029695 4 IGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAK 81 (189)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~ 81 (189)
+...+.|..|++.|...+.+.++++.||++||+|..|+.+|.. ..|+.+++.+||..||.++|+
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-------------- 67 (122)
T 1m3v_A 2 SLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-------------- 67 (122)
T ss_dssp CSCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC--------------
T ss_pred CCCCCCCCCCCCEECCCEEEEECCCEEHHHCCCCCCCCCCCCCCCCEEEEECCEEECHHHHHHHCC--------------
T ss_conf 878787704699757968999898453763888378899411068817987993226789898728--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHH
Q ss_conf 7677896555896654556789988--79867965324631102473222126101657888889980012990042868
Q 029695 82 SAEKLTPELTRSPSKAASMFSGTQE--KCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHH 159 (189)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~i~~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c 159 (189)
+ +|+.|+++|.+.+ +++.++ ..|.+..|+..++++||..|
T Consensus 68 ------------------------~~~~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f~~~~~~~yC~~~ 109 (122)
T 1m3v_A 68 ------------------------NSGAGGSGGHMGSGGD-VMVVGE-------------PTLMGGEFGDEDERLITRLE 109 (122)
T ss_dssp ------------------------CCCSSSCSSCCSCCEE-SSSSSS-------------SSCCSCTTCCTTCCCCEECT
T ss_pred ------------------------CCCCCCCCCCCCCCHH-EEECCC-------------CCCCCCCCEECCCEEECCCC
T ss_conf ------------------------9985656998857221-678387-------------37899953763997676670
Q ss_pred HHHHHCCCCCCC
Q ss_conf 873636998977
Q 029695 160 FSQLFKEKGSYN 171 (189)
Q Consensus 160 ~~~~f~~k~~~~ 171 (189)
|.+++..+++..
T Consensus 110 ~~~~~~~~g~~~ 121 (122)
T 1m3v_A 110 NTQFDAANGIDD 121 (122)
T ss_dssp TTTTTCCSCCCC
T ss_pred CHHCHHHCCCCC
T ss_conf 132200037878
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=1.00 E-value=1 Score=113.49 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=90.2
Q ss_pred CCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 887754346720003621873893013467434456565778--982125993113201776525777777898889877
Q 029695 5 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKL--SNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSPAKS 82 (189)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~ 82 (189)
++.++|..|++.|...+.+.++++.||++||+|..|+.+|.. ..|+.+++.+||+.||.++|+
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~--------------- 65 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG--------------- 65 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT---------------
T ss_pred CCCCCCCCCCCEECCCEEEEECCHHHHHHCCCCCCCCCCHHCCCCEEEEECCEEECHHHHHHHHC---------------
T ss_conf 93888747899648968999896147786074453588402179854888996503689987717---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 67789655589665455678998879867965324631102473222126101657888889980012990042868873
Q 029695 83 AEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGILYCKHHFSQ 162 (189)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~i~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~ 162 (189)
++|..|.. .+.+. |. ...+.+..|+..++++||..|+.+
T Consensus 66 -----------------------~~c~~c~~----~~~~~------------~~--~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 66 -----------------------SGGHMGSG----GDVMV------------VG--EPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp -----------------------SCCSSCBS----CSCCC------------SS--CSSTTSSBCCCSSSCCCEEEECTT
T ss_pred -----------------------CCCCCCCC----CCEEE------------CC--CCCCCCCEEEECCCEEECCHHHHC
T ss_conf -----------------------66675789----72168------------48--726899940773999666405121
Q ss_pred HHCCCCCCCC
Q ss_conf 6369989774
Q 029695 163 LFKEKGSYNH 172 (189)
Q Consensus 163 ~f~~k~~~~~ 172 (189)
+.+..++.++
T Consensus 105 ~~~~~g~~~~ 114 (114)
T 1j2o_A 105 FDAANGIDDE 114 (114)
T ss_dssp CCCTTSSCCC
T ss_pred CCCCCCCCCC
T ss_conf 6533488888
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=107.27 Aligned_cols=79 Identities=19% Similarity=0.484 Sum_probs=71.9
Q ss_pred CCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEECCCCCCCCC
Q ss_conf 993113201776525777777898889877677896555896654556789988798679653246-3110247322212
Q 029695 53 EGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPL-EKVAVENQAYHKT 131 (189)
Q Consensus 53 ~g~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~-~~i~~~~~~~H~~ 131 (189)
+|.+||+.||.++++ ++|..|+++|.+. ..+.+.++.||++
T Consensus 1 ~g~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~ 42 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA--------------------------------------NTCAECQQLIGHDSRELFYEDRHFHEG 42 (82)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTT
T ss_pred CCCEECHHHHCCCCC--------------------------------------CCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 994665458674127--------------------------------------808458971136938897487631654
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCC
Q ss_conf 61016578888899800129900428688736369989
Q 029695 132 CFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGS 169 (189)
Q Consensus 132 Cf~C~~C~~~l~~~~~~~~~g~~~C~~c~~~~f~~k~~ 169 (189)
||+|..|+.+|....|+..++.+||..||.++|+++|.
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCEECCCCCCCCCCCCEEECCEEECHHHHHHHCCCCCC
T ss_conf 87434799953989268559978887887665478788
Done!