Query 029698
Match_columns 189
No_of_seqs 57 out of 59
Neff 2.2
Searched_HMMs 13730
Date Tue Mar 26 18:26:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029698.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2318-2322//hhsearch_scop/029698hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rvv1_ c.16.1.1 (1:) Lumazine 6.4 28 0.002 13.4 -1.4 68 77-148 46-122 (154)
2 d1u5sb2 g.39.1.3 (B:103-137) P 4.9 84 0.0061 10.7 1.0 13 23-35 4-16 (35)
3 d1p90a_ c.55.5.2 (A:) NafY cor 4.5 59 0.0043 11.6 -0.7 12 59-70 29-40 (123)
4 d2dt6a1 a.217.1.1 (A:48-110) S 4.2 89 0.0065 10.5 0.0 28 122-149 12-44 (63)
5 d1eg3a3 b.72.1.1 (A:47-84) Dys 4.2 92 0.0067 10.5 0.1 11 89-99 11-21 (38)
6 d1nqua_ c.16.1.1 (A:) Lumazine 3.6 25 0.0018 13.7 -3.3 25 105-129 55-81 (154)
7 d1lvaa3 a.4.5.35 (A:511-574) C 3.6 98 0.0071 10.3 -0.2 6 91-96 23-28 (64)
8 d1v8ba2 c.23.12.3 (A:4-234,A:3 3.5 59 0.0043 11.5 -1.3 14 9-23 72-85 (313)
9 d1t3ba2 d.17.3.1 (A:2-60) Disu 3.1 1.3E+02 0.0092 9.7 0.2 13 126-138 47-59 (59)
10 d1ig8a2 c.55.1.3 (A:225-486) H 2.9 92 0.0067 10.5 -0.9 20 113-132 169-199 (262)
No 1
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=6.37 E-value=28 Score=13.42 Aligned_cols=68 Identities=22% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCCCCCCC
Q ss_conf 5799888999999998543468887788--------8657407999999999999873023263229974-000269942
Q 029698 77 ETIPSWAKPDSDEPPPWATDEGKGLTSQ--------GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV-FGILNSDSI 147 (189)
Q Consensus 77 e~~pswAkp~sde~PPWaR~E~~~~~a~--------~~~~lPf~~yLl~ScItAIAAVGSIFEls~g~P~-fGv~~tDS~ 147 (189)
+.+..---||+=|+|-.++.-.+.+.-+ -.++-+-+-|..-+|..+|.-+. +.++.|+ ||++++++.
T Consensus 46 ~~i~v~~VPGa~EiP~~~~~~~~~~~~daiIalG~VIkGeT~H~e~I~~~v~~gl~~ls----l~~~~PV~~GILt~~n~ 121 (154)
T d1rvv1_ 46 NDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAA----NTTGVPVIFGIVTTENI 121 (154)
T ss_dssp GGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHH----HHHCSCEEEEEEEESSH
T ss_pred CCCEEEEECCEEEHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH----CCCCCCEEEEECCCCCH
T ss_conf 67579997845318799998750346562788889971787067789999999999996----32798779862588988
Q ss_pred C
Q ss_conf 2
Q 029698 148 F 148 (189)
Q Consensus 148 l 148 (189)
-
T Consensus 122 ~ 122 (154)
T d1rvv1_ 122 E 122 (154)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 2
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=84 Score=10.67 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 8998786566134
Q 029698 23 PSHPKPFLGDGQR 35 (189)
Q Consensus 23 ~s~~~~f~g~~~~ 35 (189)
+-|-+||+|-++.
T Consensus 4 A~CekPF~G~rhy 16 (35)
T d1u5sb2 4 AKCEKPFLGHRHY 16 (35)
T ss_dssp TTTCCBCSSSCCE
T ss_pred CCCCCCCCCCHHH
T ss_conf 4348856784326
No 3
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=4.46 E-value=59 Score=11.56 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=5.9
Q ss_pred EEEEEEEECCCC
Q ss_conf 018999721788
Q 029698 59 RFSVFAVTEGSA 70 (189)
Q Consensus 59 ~~~~~a~t~gsa 70 (189)
.+.++-++++..
T Consensus 29 ~F~Iyev~~~~~ 40 (123)
T d1p90a_ 29 RFLVYQVSAKDA 40 (123)
T ss_dssp EEEEEEEESSCE
T ss_pred EEEEEEECCCCE
T ss_conf 899999629937
No 4
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.18 E-value=89 Score=10.53 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHCCEEEEE-----CCCCCCCCCCCCCCCC
Q ss_conf 998730232632-----2997400026994221
Q 029698 122 AIAAIGSIFEYV-----NKNPVFGILNSDSIFY 149 (189)
Q Consensus 122 AIAAVGSIFEls-----~g~P~fGv~~tDS~ly 149 (189)
-||--|.-||-. .+||.|..+..+++++
T Consensus 12 fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h 44 (63)
T d2dt6a1 12 FVARNGPEFEARIRQNEINNPKFNFLNPNDPYH 44 (63)
T ss_dssp HHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTH
T ss_pred HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 999705999999998456998671899999785
No 5
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.16 E-value=92 Score=10.46 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 99985434688
Q 029698 89 EPPPWATDEGK 99 (189)
Q Consensus 89 e~PPWaR~E~~ 99 (189)
.-|||.|-.-.
T Consensus 11 V~~PWeRait~ 21 (38)
T d1eg3a3 11 VQGPWERAISP 21 (38)
T ss_dssp CCTTEEEEECT
T ss_pred CCCCHHHHCCC
T ss_conf 66645440255
No 6
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=3.59 E-value=25 Score=13.70 Aligned_cols=25 Identities=44% Similarity=0.624 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHH--HHHHHHHCCE
Q ss_conf 865740799999999--9999873023
Q 029698 105 GSFEIPFYVYLLTST--ITAIAAIGSI 129 (189)
Q Consensus 105 ~~~~lPf~~yLl~Sc--ItAIAAVGSI 129 (189)
+++|+|+-+-.++.- +-||-|.|+|
T Consensus 55 Ga~EiP~~~~~l~~~~~~daiIaLG~V 81 (154)
T d1nqua_ 55 GSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp SGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 777717999999860477848988899
No 7
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=3.56 E-value=98 Score=10.30 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 985434
Q 029698 91 PPWATD 96 (189)
Q Consensus 91 PPWaR~ 96 (189)
|||.|+
T Consensus 23 PP~vrd 28 (64)
T d1lvaa3 23 PPSFKE 28 (64)
T ss_dssp CCBHHH
T ss_pred CCCHHH
T ss_conf 995999
No 8
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=3.52 E-value=59 Score=11.53 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 677531023387788
Q 029698 9 SSSCNLIRSSGKQIP 23 (189)
Q Consensus 9 ~~~~~~i~~~~~q~~ 23 (189)
||+|| |-|.|+..+
T Consensus 72 ~~scN-p~STQD~vA 85 (313)
T d1v8ba2 72 WCSCN-IYSTADYAA 85 (313)
T ss_dssp EECSS-SSCCCHHHH
T ss_pred EECCC-CCCCCHHHH
T ss_conf 74268-765654888
No 9
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=3.11 E-value=1.3e+02 Score=9.68 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=0.0
Q ss_pred HCCEEEEECCCCC
Q ss_conf 3023263229974
Q 029698 126 IGSIFEYVNKNPV 138 (189)
Q Consensus 126 VGSIFEls~g~P~ 138 (189)
.|.+|++.++.|+
T Consensus 47 ~G~l~~l~~~~~V 59 (59)
T d1t3ba2 47 EGKLYELTNNGPV 59 (59)
T ss_dssp CSCCCCCTTTSCC
T ss_pred EEEEEECCCCCCC
T ss_conf 7588880478739
No 10
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}
Probab=2.91 E-value=92 Score=10.45 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-----------HHHCCEEEE
Q ss_conf 99999999999-----------873023263
Q 029698 113 VYLLTSTITAI-----------AAIGSIFEY 132 (189)
Q Consensus 113 ~yLl~ScItAI-----------AAVGSIFEl 132 (189)
++|.+++|.|| |..||+||+
T Consensus 169 A~L~Aa~iaai~~~~~~~~~~VavDGSv~~~ 199 (262)
T d1ig8a2 169 ARLSVCGIAAICQKRGYKTGHIAADGSVYNR 199 (262)
T ss_dssp HHHHTHHHHHHHHHHTCSSEEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC
T ss_conf 9999999999996437887679996064545
Done!