BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029699
MSSSSSSSSPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNI
VCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSC
DVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTR
GSCILMHDS

High Scoring Gene Products

Symbol, full name Information P value
AT1G18680 protein from Arabidopsis thaliana 9.0e-61
AT3G47490 protein from Arabidopsis thaliana 4.4e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029699
        (189 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035020 - symbol:AT1G18680 species:3702 "Arabi...   622  9.0e-61   1
TAIR|locus:2079137 - symbol:AT3G47490 species:3702 "Arabi...   323  4.4e-29   1


>TAIR|locus:2035020 [details] [associations]
            symbol:AT1G18680 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0003676 GO:GO:0004519
            InterPro:IPR003615 SMART:SM00507 EMBL:AC011809 EMBL:BT005697
            EMBL:AK118073 IPI:IPI00526222 PIR:E86320 RefSeq:NP_173303.1
            UniGene:At.41783 ProteinModelPortal:Q9M9T9 SMR:Q9M9T9
            EnsemblPlants:AT1G18680.1 GeneID:838449 KEGG:ath:AT1G18680
            TAIR:At1g18680 eggNOG:NOG312551 HOGENOM:HOG000005924
            InParanoid:Q9M9T9 OMA:AGNIVCK PhylomeDB:Q9M9T9
            ProtClustDB:CLSN2682415 ArrayExpress:Q9M9T9 Genevestigator:Q9M9T9
            Uniprot:Q9M9T9
        Length = 186

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query:    28 YFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGE 87
             +FDGKAK+ CWA A+ VPGRHPERWRKD AGNIVCKRF NC+GCLCFEYDHIVP+SKGGE
Sbjct:    42 FFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGE 101

Query:    88 STADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQC 147
             S A+NCQILQTRVNRFKS +E VDAT LK +SC ++FTDKELD+IEMAVYGDV+RPG +C
Sbjct:   102 SIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDVLRPGKEC 161

Query:   148 RCKTVAEMLGQFKSKD 163
             RCKTVAE+LGQ KSKD
Sbjct:   162 RCKTVAELLGQSKSKD 177


>TAIR|locus:2079137 [details] [associations]
            symbol:AT3G47490 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002686
            GO:GO:0003676 GO:GO:0004519 InterPro:IPR003615 SMART:SM00507
            EMBL:AL132955 HOGENOM:HOG000005924 EMBL:BT029387 IPI:IPI00545660
            PIR:T45709 RefSeq:NP_190333.1 UniGene:At.35801
            ProteinModelPortal:Q9SN88 SMR:Q9SN88 PRIDE:Q9SN88
            EnsemblPlants:AT3G47490.1 GeneID:823903 KEGG:ath:AT3G47490
            TAIR:At3g47490 InParanoid:Q9SN88 OMA:LIELTAY PhylomeDB:Q9SN88
            ProtClustDB:CLSN2685175 ArrayExpress:Q9SN88 Genevestigator:Q9SN88
            Uniprot:Q9SN88
        Length = 234

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 56/122 (45%), Positives = 78/122 (63%)

Query:    29 FDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGES 88
             F    K  CW KAE + GR PERWR+D  GNIV ++   C GCLC +YDHIVP+SKGG+S
Sbjct:   111 FPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKS 170

Query:    89 TADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 148
             T +NCQ+LQ +VNR K +K  +  ++L   S   +   +++D+IE+  YG+V R      
Sbjct:   171 TLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSG 230

Query:   149 CK 150
             C+
Sbjct:   231 CR 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       163   0.00084  107 3  11 22  0.45    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  184 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.92u 0.07s 15.99t   Elapsed:  00:00:03
  Total cpu time:  15.92u 0.07s 15.99t   Elapsed:  00:00:03
  Start:  Sat May 11 08:04:53 2013   End:  Sat May 11 08:04:56 2013

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