BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029699
         (189 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q93Z24|BGA17_ARATH Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1
          Length = 697

 Score = 31.6 bits (70), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 76  YDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDAT--KLKGF-SCDVKFTDKELDII 132
           YD+  P  + G+      Q LQ  + ++ +    +  +  + K + S  ++ T    D++
Sbjct: 369 YDYDAPIKESGDIDNPKFQALQRVIKKYNASPHPISPSNKQRKAYGSIKMQMTTSLFDLV 428

Query: 133 EMAVYGDVIRPGNQCRCKTVAEMLG 157
            M    DVI   N    ++V +M G
Sbjct: 429 RMTDPADVITSANPISMESVGQMFG 453


>sp|O67356|CLPX_AQUAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex
           aeolicus (strain VF5) GN=clpX PE=3 SV=1
          Length = 412

 Score = 30.4 bits (67), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 117 GFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQF 159
           GF  ++K  DKE D++E+    D+IR G       + E +G+F
Sbjct: 267 GFEAEIKKVDKEQDLLELVEPDDLIRFG------MIPEFIGRF 303


>sp|P24200|MCRA_ECOLI 5-methylcytosine-specific restriction enzyme A OS=Escherichia coli
           (strain K12) GN=mcrA PE=4 SV=2
          Length = 277

 Score = 30.0 bits (66), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 74  FEYDHIVPFSKGGESTADNCQIL 96
            E  H++P S GG  T DNC  L
Sbjct: 225 LEVHHVIPLSSGGADTTDNCVAL 247


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.131    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,676,831
Number of Sequences: 539616
Number of extensions: 2824960
Number of successful extensions: 28298
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 27820
Number of HSP's gapped (non-prelim): 336
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)