Query 029699
Match_columns 189
No_of_seqs 205 out of 1062
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:29:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029699.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2318-2322//hhsearch_pdb/029699hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 1.0 1 1 90.4 -2.9 48 63-110 33-86 (112)
2 7cei_B Protein (colicin E7 imm 1.0 1 1 37.5 -0.2 77 23-103 113-201 (206)
3 1fr2_B Colicin E9; protein-pro 1.0 1 1 37.3 -3.0 76 23-102 41-128 (134)
4 2jb0_B Colicin E7; hydrolase/i 1.0 1 1 37.2 -2.9 76 23-102 38-125 (131)
5 3m7k_A Restriction endonucleas 1.0 1 1 35.1 -0.9 44 63-109 58-121 (142)
6 1e7l_A GP49, recombination end 1.0 1 1 28.8 -0.5 51 31-107 9-68 (157)
7 2pu3_A Endonuclease I; cold ad 1.0 1 1 17.2 -4.2 37 72-108 57-117 (211)
8 3alr_A Nanos protein; zinc-fin 1.0 1 1 15.9 0.4 64 4-72 5-78 (106)
9 3plw_A Recombination enhanceme 1.0 1 1 12.9 -1.0 35 67-105 95-138 (186)
10 3dcl_A TM1086; SAD, structural 1.0 1 1 12.4 0.0 31 70-100 54-85 (284)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=1.00 E-value=1 Score=90.43 Aligned_cols=48 Identities=31% Similarity=0.347 Sum_probs=42.5
Q ss_pred ECCCCCCCCC------CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 0699878888------77211367536999990768999939998502697310
Q 029699 63 KRFCNCHGCL------CFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQV 110 (189)
Q Consensus 63 r~~~~C~~C~------~~evDHIiP~s~GG~~~~~NLq~LC~~CN~~K~n~~~~ 110 (189)
++++.|+||. .++||||+|+++||.++++||+++|..||..|++.++.
T Consensus 33 r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~ 86 (112)
T 2qgp_A 33 IARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPV 86 (112)
T ss_dssp HHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSH
T ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCCCHHHCHHHCHHHHHHHCCCCHH
T ss_conf 838968899994798873788886552089998121766379999877169999
No 2
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=1.00 E-value=1 Score=37.54 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=52.1
Q ss_pred CCCCCCCC--HHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCC---------CCCCCCEEEECCCCCC-CHH
Q ss_conf 88889887--88999999871899999951022013577375069987888---------8772113675369999-907
Q 029699 23 EERPRYFD--GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGC---------LCFEYDHIVPFSKGGE-STA 90 (189)
Q Consensus 23 ~~~~R~f~--~~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C---------~~~evDHIiP~s~GG~-~~~ 90 (189)
+.+-|.|. ..-|++.|.-.. .+|+.-.+-.-.|+..-..+.-++- ..||++|+.|.+.||. .++
T Consensus 113 KLRGR~F~sFD~FR~AFWkeVa----~DPeLskQF~~~N~~~Mk~G~AP~ap~~e~vG~R~kfELHH~~~I~~GG~VYDi 188 (206)
T 7cei_B 113 KLRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDM 188 (206)
T ss_dssp HHTTCBCSSHHHHHHHHHHHHT----TCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBT
T ss_pred HHCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCEEECC
T ss_conf 8658857888999999999980----399999987587899987789998972564398416983167201358800004
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6899993999850
Q 029699 91 DNCQILQTRVNRF 103 (189)
Q Consensus 91 ~NLq~LC~~CN~~ 103 (189)
+||.++-..-|..
T Consensus 189 DNLrI~TPK~Hie 201 (206)
T 7cei_B 189 DNISVVTPKRHID 201 (206)
T ss_dssp TSEEEECHHHHHH
T ss_pred CCEEECCHHHHHH
T ss_conf 5636658077776
No 3
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=1.00 E-value=1 Score=37.30 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCCCCCCCH--HHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCC---------CCCCCCEEEECCCCCC-CHH
Q ss_conf 888898878--8999999871899999951022013577375069987888---------8772113675369999-907
Q 029699 23 EERPRYFDG--KAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGC---------LCFEYDHIVPFSKGGE-STA 90 (189)
Q Consensus 23 ~~~~R~f~~--~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C---------~~~evDHIiP~s~GG~-~~~ 90 (189)
+.+-|.|+. +.|++.|.... .+|+...+-.-+|+..=..+.-++- ..||++|+.|.+.||. .++
T Consensus 41 kLRGr~F~sFd~FR~afW~eVs----~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~r~kfelHH~~~I~~GG~VYdl 116 (134)
T 1fr2_B 41 KLRDKEFKSFDDFRKAVWEEVS----KDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEVYDM 116 (134)
T ss_dssp HHTTCEESSHHHHHHHHHHHHH----HCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCGGGTCCSSBG
T ss_pred HHCCCCCCCHHHHHHHHHHHHH----CCHHHHHHHCHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEECCHHHCCCEEEEE
T ss_conf 8648857888999999999983----099999986787899987789999861210188647998850142158715652
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689999399985
Q 029699 91 DNCQILQTRVNR 102 (189)
Q Consensus 91 ~NLq~LC~~CN~ 102 (189)
+||.++-..-|.
T Consensus 117 DNL~i~TPk~Hi 128 (134)
T 1fr2_B 117 DNIRVTTPKRHI 128 (134)
T ss_dssp GGEEEECHHHHH
T ss_pred ECEEECCCCCCC
T ss_conf 037871851002
No 4
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=1.00 E-value=1 Score=37.19 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=52.6
Q ss_pred CCCCCCCCH--HHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCC---------CCCCCCEEEECCCCCC-CHH
Q ss_conf 888898878--8999999871899999951022013577375069987888---------8772113675369999-907
Q 029699 23 EERPRYFDG--KAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGC---------LCFEYDHIVPFSKGGE-STA 90 (189)
Q Consensus 23 ~~~~R~f~~--~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C---------~~~evDHIiP~s~GG~-~~~ 90 (189)
+.+-|.|+. +.|++.|.... .+|+...+-.-+|+..=..+.-++- ..||++|+.|.+.||. .++
T Consensus 38 kLRGr~F~sFd~FR~afW~eVs----~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~r~kfelHH~~~I~~GG~VYdl 113 (131)
T 2jb0_B 38 KLRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDM 113 (131)
T ss_dssp HHTTCEESSHHHHHHHHHHHHH----HCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCCC--CCSSBG
T ss_pred HHCCCCCCCHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEEECHHHCCCEEEEE
T ss_conf 8748857888999999999983----099999986687899987789999970210188637998850042158715652
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689999399985
Q 029699 91 DNCQILQTRVNR 102 (189)
Q Consensus 91 ~NLq~LC~~CN~ 102 (189)
+||.++-..-|.
T Consensus 114 DNL~i~TPk~Hi 125 (131)
T 2jb0_B 114 DNISVVTPKRHI 125 (131)
T ss_dssp GGEEEECHHHHH
T ss_pred EEEEECCCCHHH
T ss_conf 037881841020
No 5
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=1.00 E-value=1 Score=35.10 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=31.6
Q ss_pred ECCCCCCCCC--------------------CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 0699878888--------------------7721136753699999076899993999850269731
Q 029699 63 KRFCNCHGCL--------------------CFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQ 109 (189)
Q Consensus 63 r~~~~C~~C~--------------------~~evDHIiP~s~GG~~~~~NLq~LC~~CN~~K~n~~~ 109 (189)
+..-.|-||. .+|||- |-+.-| -+.+||+++|..||+.|++++.
T Consensus 58 ~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR--~~~~~~-Ys~dNLaLAC~~CNnaKsdk~t 121 (142)
T 3m7k_A 58 SAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDR--SDSFEG-YSPQNARLACFICNRIKSNIFS 121 (142)
T ss_dssp GGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEE--SSTTSC-BCTTTEEEECHHHHHHHTTTSC
T ss_pred CCCCCEEEECCCHHHHHHHHHCCCCCCCCCCEEEEC--CCCCCC-CCHHHHHHHHHHHHCCCCCCCC
T ss_conf 788813540666999999853167775145247731--487656-4888999998987550533334
No 6
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=1.00 E-value=1 Score=28.75 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=34.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCC--------CCCCCEEEECCCCCCCHHHHHH-HHHHHHH
Q ss_conf 889999998718999999510220135773750699878888--------7721136753699999076899-9939998
Q 029699 31 GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCL--------CFEYDHIVPFSKGGESTADNCQ-ILQTRVN 101 (189)
Q Consensus 31 ~~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C~--------~~evDHIiP~s~GG~~~~~NLq-~LC~~CN 101 (189)
++.+.++++.++ +.|+.|. ...+||..+.. |..+= +.+ +||..||
T Consensus 9 ~~~~~~l~~~Q~-----------------------g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~tG-~VRGlLC~~CN 62 (157)
T 1e7l_A 9 KEEKQKFYDAQN-----------------------GKCLICQRELNPDVQANHLDHDHELN--GPKAG-KVRGLLCNLCD 62 (157)
T ss_dssp HHHHHHHHHHTT-----------------------TBCTTTCCBCCSSGGGSEEEECCCCS--STTTT-BEEEEECHHHH
T ss_pred HHHHHHHHHHHC-----------------------CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC-CCHHHCCHHHH
T ss_conf 999999999968-----------------------96866688666666545016778777--77777-54421557675
Q ss_pred HHCCCC
Q ss_conf 502697
Q 029699 102 RFKSDK 107 (189)
Q Consensus 102 ~~K~n~ 107 (189)
...|..
T Consensus 63 ~~lG~~ 68 (157)
T 1e7l_A 63 AAEGQM 68 (157)
T ss_dssp HHHHHH
T ss_pred CHHCCC
T ss_conf 511155
No 7
>2pu3_A Endonuclease I; cold adaptation, salt adaptation, psychrophilic enzymes, END I, hydrolase; 1.50A {Vibrio salmonicida} PDB: 1ouo_A 1oup_A 2ivk_A 2vnd_A 2g7e_A 2g7f_A
Probab=1.00 E-value=1 Score=17.16 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=26.5
Q ss_pred CCCCCCEEEECCCCCC------------------------CHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8772113675369999------------------------907689999399985026973
Q 029699 72 LCFEYDHIVPFSKGGE------------------------STADNCQILQTRVNRFKSDKE 108 (189)
Q Consensus 72 ~~~evDHIiP~s~GG~------------------------~~~~NLq~LC~~CN~~K~n~~ 108 (189)
..++..||+|.+..|. +++-||.++=..+|..++|.-
T Consensus 57 ~~in~EHvvP~s~fg~~~~cw~~gGrk~c~~~d~~~~~m~sDlHnL~Pad~~vNs~RsN~~ 117 (211)
T 2pu3_A 57 SRIEWEHVVPAWQFGHQRQCWQKGGRKNCTRNDKQFKSMEADLHNLVPAIGEVNGDRSNFR 117 (211)
T ss_dssp TSEEEEESSCHHHHHTTSHHHHTTHHHHHHHHCHHHHHHHHCGGGEEEEEHHHHHHHTTCE
T ss_pred CCCCCCEEECHHHCCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCEECCCCHHHCCCCCCC
T ss_conf 6776441053787486530001355000012684447643111413216632315777888
No 8
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=1.00 E-value=1 Score=15.94 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH----HCCCCCCEEE--ECCCCCCCCC
Q ss_conf 999999865578888----9999888898878899999987189999995102----2013577375--0699878888
Q 029699 4 SSSSSSPNRSRSSNS----NNSNEERPRYFDGKAKSMCWAKAETVPGRHPERW----RKDAAGNIVC--KRFCNCHGCL 72 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~R~f~~~~R~~~w~ka~~v~Gr~~~r~----R~da~gnvv~--r~~~~C~~C~ 72 (189)
+.+||.|-|+|...- ++++..+........=..|+++-+ ..+.| .+|..|.|++ .+.+.|+.|.
T Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~FCrnNGE-----~~~vy~SH~LKd~~G~V~CPvLR~Y~CpiCG 78 (106)
T 3alr_A 5 SESPSGPIRSRDSPEQNTSPGGGKPKSSPAERKFCSFCKHNGE-----TEAVYTSHYLKNRDGDVMCPYLRQYKCPLCG 78 (106)
T ss_dssp ---------------------------------CCHHHHHTTC-----CHHHHTSBCSBCTTSCBCCTTGGGCCCTTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----CCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 6688886435887656568888876678899998689788896-----6470313166779998968882264487877
No 9
>3plw_A Recombination enhancement function protein; HNH nuclease, DNAse, hydrolase; 1.40A {Enterobacteria phage P1}
Probab=1.00 E-value=1 Score=12.88 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCCCC-------CCCCCCEEEECCCCCCCHHHH--HHHHHHHHHHHCC
Q ss_conf 87888-------877211367536999990768--9999399985026
Q 029699 67 NCHGC-------LCFEYDHIVPFSKGGESTADN--CQILQTRVNRFKS 105 (189)
Q Consensus 67 ~C~~C-------~~~evDHIiP~s~GG~~~~~N--Lq~LC~~CN~~K~ 105 (189)
.|.-| ...+|+||. |+.-.-.+ -.+||..+|+.-.
T Consensus 95 gCIaCr~~g~~~~~~~IHHi~----Grt~~~aH~~vLPLC~~HHq~~~ 138 (186)
T 3plw_A 95 PCIACYMHGVISNEVSLHHIA----GRTAPGCHKKQLPLCRWHHQHAA 138 (186)
T ss_dssp CCHHHHHTTCCCCCEEEEESS----CSSSTTGGGSEEEEEHHHHTCCC
T ss_pred CCCEECCCCCCCCCEEEEECC----CCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 831123778899850343337----67666765550668867763457
No 10
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=1.00 E-value=1 Score=12.42 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEE-CCCCCCCHHHHHHHHHHHH
Q ss_conf 888772113675-3699999076899993999
Q 029699 70 GCLCFEYDHIVP-FSKGGESTADNCQILQTRV 100 (189)
Q Consensus 70 ~C~~~evDHIiP-~s~GG~~~~~NLq~LC~~C 100 (189)
.|+.|.-|||-| +|---.+...|-.+.--.|
T Consensus 54 ~afg~aGDHvEPgVS~~n~~~~~N~al~~~sC 85 (284)
T 3dcl_A 54 SAYGWAGDHVEPGVSVMARRKEEEIPLMTLSC 85 (284)
T ss_dssp BSSSCBSSSCCCEEEEECSSGGGHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 12233244317871115887675620368862
Done!