Query 029700
Match_columns 189
No_of_seqs 260 out of 1204
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 17:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 99.9 3.4E-23 7.5E-28 142.3 14.1 173 1-173 122-294 (294)
2 PLN02679 hydrolase, alpha/beta 99.9 2.9E-21 6.3E-26 135.9 15.2 118 56-173 235-357 (360)
3 PLN02578 hydrolase 99.8 2.2E-18 4.8E-23 121.2 15.1 115 56-171 235-353 (354)
4 PRK10349 carboxylesterase BioH 99.8 1.7E-18 3.8E-23 116.8 12.1 69 104-172 187-255 (256)
5 KOG1454 Predicted hydrolase/ac 99.8 6.8E-19 1.5E-23 121.4 5.2 68 106-173 256-324 (326)
6 PRK03592 haloalkane dehalogena 99.8 4.9E-18 1.1E-22 116.9 8.5 69 107-175 222-291 (295)
7 TIGR03343 biphenyl_bphD 2-hydr 99.7 3.8E-17 8.3E-22 111.8 11.3 66 106-171 216-281 (282)
8 TIGR01738 bioH putative pimelo 99.7 1.2E-16 2.7E-21 106.7 11.9 67 104-170 179-245 (245)
9 KOG4178 Soluble epoxide hydrol 99.7 5.4E-17 1.2E-21 108.7 7.7 102 71-173 215-320 (322)
10 TIGR02240 PHA_depoly_arom poly 99.7 2E-16 4.3E-21 108.0 9.3 69 106-175 200-268 (276)
11 PRK07581 hypothetical protein; 99.7 5E-16 1.1E-20 109.0 11.1 71 104-174 266-337 (339)
12 PLN03087 BODYGUARD 1 domain co 99.7 7.1E-17 1.5E-21 116.1 6.7 65 109-173 414-479 (481)
13 PRK06489 hypothetical protein; 99.7 4.8E-16 1E-20 109.7 10.4 72 102-174 281-358 (360)
14 PRK03204 haloalkane dehalogena 99.7 9.4E-16 2E-20 105.0 10.4 58 113-170 227-285 (286)
15 KOG4409 Predicted hydrolase/ac 99.7 1.7E-15 3.7E-20 102.1 10.5 172 1-173 180-364 (365)
16 TIGR03056 bchO_mg_che_rel puta 99.7 2.8E-15 6.1E-20 102.3 11.8 66 106-171 213-278 (278)
17 PRK00175 metX homoserine O-ace 99.7 6.2E-16 1.4E-20 109.7 8.8 71 105-175 301-376 (379)
18 PRK10673 acyl-CoA esterase; Pr 99.7 2.8E-15 6E-20 101.2 11.4 66 107-172 189-254 (255)
19 PLN03084 alpha/beta hydrolase 99.7 5.8E-15 1.3E-19 104.2 13.1 62 110-172 322-383 (383)
20 KOG2984 Predicted hydrolase [G 99.6 1.3E-15 2.9E-20 95.0 8.3 82 92-173 195-276 (277)
21 PRK06765 homoserine O-acetyltr 99.6 1.7E-15 3.6E-20 107.1 9.5 69 104-172 314-387 (389)
22 PRK08775 homoserine O-acetyltr 99.6 2.5E-15 5.5E-20 105.5 9.5 67 108-174 272-340 (343)
23 PRK00870 haloalkane dehalogena 99.6 5.6E-15 1.2E-19 102.1 10.1 66 107-173 233-301 (302)
24 TIGR01392 homoserO_Ac_trn homo 99.6 4E-15 8.6E-20 104.8 8.4 67 105-171 280-351 (351)
25 PLN02965 Probable pheophorbida 99.6 2.1E-15 4.5E-20 101.8 6.4 66 108-173 188-253 (255)
26 PLN02385 hydrolase; alpha/beta 99.6 3.2E-15 7E-20 105.2 5.7 69 106-174 272-346 (349)
27 PLN02894 hydrolase, alpha/beta 99.6 1E-13 2.2E-18 99.1 12.6 72 104-176 316-388 (402)
28 TIGR02427 protocat_pcaD 3-oxoa 99.5 3.2E-14 7E-19 95.3 8.3 67 105-171 185-251 (251)
29 PRK11126 2-succinyl-6-hydroxy- 99.5 2.6E-13 5.6E-18 90.9 11.0 63 104-172 179-241 (242)
30 TIGR03695 menH_SHCHC 2-succiny 99.5 2.9E-13 6.3E-18 90.6 11.2 65 106-171 187-251 (251)
31 PRK14875 acetoin dehydrogenase 99.5 2.7E-13 5.9E-18 96.3 11.5 64 106-172 307-370 (371)
32 PLN02980 2-oxoglutarate decarb 99.5 1.8E-13 3.9E-18 111.7 11.4 73 104-177 1559-1643(1655)
33 PHA02857 monoglyceride lipase; 99.5 4.2E-13 9.1E-18 91.7 10.0 68 106-173 202-273 (276)
34 KOG2382 Predicted alpha/beta h 99.5 6.4E-13 1.4E-17 89.4 10.3 65 110-174 250-314 (315)
35 TIGR03611 RutD pyrimidine util 99.4 3.7E-13 8E-18 90.7 7.4 67 105-171 190-256 (257)
36 PF12697 Abhydrolase_6: Alpha/ 99.4 1.4E-13 3E-18 90.8 4.9 60 106-165 169-228 (228)
37 KOG2931 Differentiation-relate 99.4 3.4E-11 7.3E-16 79.8 13.1 157 1-174 142-307 (326)
38 TIGR01250 pro_imino_pep_2 prol 99.3 1.9E-12 4.2E-17 88.5 5.9 65 106-171 224-288 (288)
39 PLN02298 hydrolase, alpha/beta 99.3 1.9E-12 4.1E-17 90.6 5.8 78 106-183 244-327 (330)
40 PF00561 Abhydrolase_1: alpha/ 99.3 1.2E-13 2.7E-18 91.5 -0.2 62 106-167 168-229 (230)
41 PF03096 Ndr: Ndr family; Int 99.3 9.1E-12 2E-16 83.1 7.3 158 1-173 119-279 (283)
42 PLN02511 hydrolase 99.3 4.7E-12 1E-16 90.3 5.0 69 106-174 291-366 (388)
43 PLN02211 methyl indole-3-aceta 99.2 5.4E-11 1.2E-15 81.1 7.0 63 109-172 206-269 (273)
44 PRK10749 lysophospholipase L2; 99.2 2.3E-11 5.1E-16 85.1 4.9 67 107-173 253-329 (330)
45 PLN02652 hydrolase; alpha/beta 99.2 7E-11 1.5E-15 84.2 5.8 69 106-174 317-388 (395)
46 TIGR01838 PHA_synth_I poly(R)- 99.1 1.6E-09 3.5E-14 79.5 12.1 56 106-161 408-463 (532)
47 PRK05855 short chain dehydroge 99.1 2.2E-10 4.8E-15 86.1 7.4 66 109-175 229-294 (582)
48 PRK05077 frsA fermentation/res 99.1 1.8E-09 3.8E-14 77.7 11.6 61 110-173 352-412 (414)
49 PRK07868 acyl-CoA synthetase; 99.1 6.7E-10 1.4E-14 88.1 9.8 69 108-176 292-364 (994)
50 TIGR01249 pro_imino_pep_1 prol 98.9 1.4E-09 3.1E-14 75.5 4.8 62 107-171 241-303 (306)
51 COG2267 PldB Lysophospholipase 98.9 4.8E-08 1E-12 67.4 10.2 69 106-174 221-295 (298)
52 KOG1455 Lysophospholipase [Lip 98.9 3E-09 6.5E-14 71.2 4.0 68 106-173 239-312 (313)
53 PF08386 Abhydrolase_4: TAP-li 98.8 1E-08 2.3E-13 59.2 5.6 62 112-173 33-94 (103)
54 PRK10985 putative hydrolase; P 98.8 7.7E-09 1.7E-13 72.4 5.7 68 106-173 248-320 (324)
55 COG1647 Esterase/lipase [Gener 98.8 4.8E-08 1E-12 62.6 8.2 67 106-172 174-243 (243)
56 PLN02872 triacylglycerol lipas 98.8 1.8E-08 3.8E-13 72.0 6.5 66 109-174 319-390 (395)
57 COG2021 MET2 Homoserine acetyl 98.8 5.3E-08 1.1E-12 67.2 7.9 67 106-172 299-367 (368)
58 TIGR01607 PST-A Plasmodium sub 98.8 2.2E-08 4.9E-13 70.2 6.2 63 109-171 264-331 (332)
59 COG0596 MhpC Predicted hydrola 98.7 3.4E-08 7.4E-13 66.4 6.2 66 106-171 214-280 (282)
60 TIGR03100 hydr1_PEP hydrolase, 98.7 1E-08 2.2E-13 70.1 3.0 65 107-172 201-274 (274)
61 TIGR01836 PHA_synth_III_C poly 98.5 1.8E-07 4E-12 66.2 4.2 64 108-172 281-349 (350)
62 PRK10566 esterase; Provisional 98.5 5.5E-07 1.2E-11 60.7 6.3 62 108-173 180-248 (249)
63 COG3208 GrsT Predicted thioest 98.4 1.1E-06 2.4E-11 57.5 6.8 62 110-172 173-235 (244)
64 PF00326 Peptidase_S9: Prolyl 98.4 2.6E-07 5.7E-12 60.8 3.4 63 112-174 143-210 (213)
65 KOG1552 Predicted alpha/beta h 98.4 7.1E-07 1.5E-11 58.8 5.1 68 107-175 186-254 (258)
66 KOG2551 Phospholipase/carboxyh 98.3 3.5E-06 7.6E-11 54.3 5.7 62 109-173 159-220 (230)
67 KOG4391 Predicted alpha/beta h 98.2 4.7E-06 1E-10 53.7 5.4 68 108-176 216-285 (300)
68 PRK11071 esterase YqiA; Provis 98.2 3.9E-06 8.5E-11 54.2 5.1 55 112-171 135-189 (190)
69 PRK13604 luxD acyl transferase 98.2 2.4E-06 5.3E-11 58.6 3.8 62 107-173 196-259 (307)
70 COG1506 DAP2 Dipeptidyl aminop 98.2 7E-06 1.5E-10 62.5 6.5 66 109-174 547-617 (620)
71 KOG4667 Predicted esterase [Li 98.1 3.6E-06 7.8E-11 54.1 4.1 58 113-171 199-256 (269)
72 PRK11460 putative hydrolase; P 98.1 2.5E-06 5.3E-11 57.0 3.5 60 111-170 146-209 (232)
73 COG0429 Predicted hydrolase of 98.1 6.6E-06 1.4E-10 56.4 5.2 68 106-173 267-340 (345)
74 PF12695 Abhydrolase_5: Alpha/ 98.1 2E-06 4.3E-11 52.9 2.0 48 106-153 97-145 (145)
75 PF01738 DLH: Dienelactone hyd 98.0 5.6E-06 1.2E-10 54.7 3.8 65 108-172 140-216 (218)
76 PF02230 Abhydrolase_2: Phosph 98.0 2.6E-05 5.5E-10 51.6 5.7 57 113-173 155-215 (216)
77 TIGR01839 PHA_synth_II poly(R) 97.9 0.00043 9.3E-09 51.6 11.3 48 107-155 435-483 (560)
78 COG2945 Predicted hydrolase of 97.8 5.6E-05 1.2E-09 47.9 5.3 62 108-171 144-205 (210)
79 PF08840 BAAT_C: BAAT / Acyl-C 97.7 2.6E-05 5.5E-10 51.4 2.8 47 109-155 111-164 (213)
80 PTZ00472 serine carboxypeptida 97.7 6E-05 1.3E-09 55.4 4.7 60 113-172 364-458 (462)
81 PF03959 FSH1: Serine hydrolas 97.6 1.8E-05 3.9E-10 52.1 1.0 50 109-159 157-207 (212)
82 TIGR01849 PHB_depoly_PhaZ poly 97.5 7.9E-05 1.7E-09 53.5 3.1 66 107-172 331-405 (406)
83 PF06821 Ser_hydrolase: Serine 97.5 0.00012 2.6E-09 46.4 3.6 48 111-159 112-159 (171)
84 PF05448 AXE1: Acetyl xylan es 97.5 0.00023 4.9E-09 49.9 5.1 66 104-173 253-320 (320)
85 PLN02442 S-formylglutathione h 97.3 0.00064 1.4E-08 46.9 5.5 47 109-155 213-264 (283)
86 COG1073 Hydrolases of the alph 97.3 0.0007 1.5E-08 46.7 5.4 68 106-173 224-297 (299)
87 KOG3043 Predicted hydrolase re 97.3 0.0005 1.1E-08 44.8 4.2 67 106-172 157-239 (242)
88 COG0400 Predicted esterase [Ge 97.2 0.00041 8.9E-09 45.3 3.4 55 113-172 146-204 (207)
89 PF00450 Peptidase_S10: Serine 97.2 0.0002 4.3E-09 52.1 2.2 59 113-171 330-414 (415)
90 PF10142 PhoPQ_related: PhoPQ- 97.2 0.0019 4.1E-08 46.0 6.6 63 109-174 258-321 (367)
91 KOG2564 Predicted acetyltransf 97.1 0.0006 1.3E-08 46.1 3.5 63 109-174 266-328 (343)
92 PLN02213 sinapoylglucose-malat 97.1 0.0013 2.9E-08 46.2 5.4 59 113-172 233-316 (319)
93 PF09752 DUF2048: Uncharacteri 97.1 0.0007 1.5E-08 47.3 3.7 57 114-171 290-347 (348)
94 PF08538 DUF1749: Protein of u 97.0 0.00023 5E-09 48.8 0.9 69 103-171 222-303 (303)
95 PF05705 DUF829: Eukaryotic pr 97.0 0.0007 1.5E-08 45.6 3.0 60 111-170 176-240 (240)
96 PLN02209 serine carboxypeptida 97.0 0.0026 5.7E-08 46.6 5.7 59 113-172 351-434 (437)
97 COG3243 PhaC Poly(3-hydroxyalk 96.9 0.0012 2.7E-08 47.1 3.4 53 106-158 323-375 (445)
98 KOG3253 Predicted alpha/beta h 96.8 0.0045 9.9E-08 46.4 6.1 68 105-172 296-373 (784)
99 PF06500 DUF1100: Alpha/beta h 96.8 0.01 2.2E-07 42.8 7.6 60 110-172 349-408 (411)
100 KOG1282 Serine carboxypeptidas 96.7 0.0035 7.5E-08 45.9 4.8 60 114-173 364-448 (454)
101 PLN03016 sinapoylglucose-malat 96.7 0.0058 1.3E-07 44.8 5.8 59 113-172 347-430 (433)
102 COG0412 Dienelactone hydrolase 96.6 0.011 2.4E-07 39.7 6.4 65 109-173 154-233 (236)
103 KOG1838 Alpha/beta hydrolase [ 96.5 0.0065 1.4E-07 43.6 4.9 68 106-173 315-388 (409)
104 PF06850 PHB_depo_C: PHB de-po 96.5 0.0059 1.3E-07 39.1 4.1 63 110-172 130-201 (202)
105 PRK05371 x-prolyl-dipeptidyl a 96.4 0.0073 1.6E-07 47.6 5.1 67 107-174 449-520 (767)
106 PRK10162 acetyl esterase; Prov 96.4 0.0085 1.8E-07 42.2 4.8 60 114-173 249-315 (318)
107 COG3545 Predicted esterase of 96.3 0.019 4E-07 36.3 5.4 63 110-173 114-179 (181)
108 KOG1551 Uncharacterized conser 96.2 0.013 2.7E-07 39.6 4.4 58 116-174 309-367 (371)
109 COG3571 Predicted hydrolase of 95.9 0.019 4.2E-07 35.7 4.2 49 106-155 135-183 (213)
110 COG4757 Predicted alpha/beta h 95.8 0.011 2.5E-07 39.0 2.9 65 106-170 209-280 (281)
111 PF06342 DUF1057: Alpha/beta h 95.6 0.15 3.2E-06 35.1 7.6 63 108-170 207-296 (297)
112 PF03583 LIP: Secretory lipase 95.5 0.036 7.8E-07 38.6 4.9 59 112-175 218-283 (290)
113 PF11339 DUF3141: Protein of u 95.2 0.097 2.1E-06 39.0 6.3 56 106-161 290-356 (581)
114 TIGR02821 fghA_ester_D S-formy 95.2 0.038 8.3E-07 38.1 4.2 45 112-156 210-259 (275)
115 KOG2624 Triglyceride lipase-ch 95.1 0.073 1.6E-06 38.7 5.4 67 108-174 327-399 (403)
116 PF05728 UPF0227: Uncharacteri 95.1 0.078 1.7E-06 34.3 5.1 53 113-170 134-186 (187)
117 PF06057 VirJ: Bacterial virul 94.9 0.072 1.6E-06 34.3 4.4 59 106-171 131-190 (192)
118 PF07859 Abhydrolase_3: alpha/ 94.8 0.011 2.3E-07 38.9 0.6 42 114-155 167-210 (211)
119 PF02273 Acyl_transf_2: Acyl t 94.6 0.055 1.2E-06 36.3 3.5 53 107-160 189-243 (294)
120 PF10230 DUF2305: Uncharacteri 94.5 0.87 1.9E-05 31.4 9.2 41 113-153 221-264 (266)
121 PRK10115 protease 2; Provision 94.4 0.18 3.9E-06 39.7 6.5 65 109-173 601-675 (686)
122 KOG1515 Arylacetamide deacetyl 94.4 0.064 1.4E-06 38.0 3.7 63 111-173 265-335 (336)
123 PLN00021 chlorophyllase 94.3 0.2 4.3E-06 35.4 5.9 49 111-159 187-246 (313)
124 KOG3975 Uncharacterized conser 94.3 0.041 9E-07 36.9 2.4 62 109-170 238-300 (301)
125 KOG2565 Predicted hydrolases o 94.1 0.13 2.9E-06 36.7 4.7 62 111-174 402-464 (469)
126 KOG4627 Kynurenine formamidase 93.7 0.032 7E-07 36.3 1.1 52 108-159 202-253 (270)
127 PF00975 Thioesterase: Thioest 93.2 0.17 3.7E-06 33.6 4.0 57 113-170 168-229 (229)
128 COG3458 Acetyl esterase (deace 92.5 0.46 1E-05 32.6 5.1 63 108-173 254-317 (321)
129 COG4188 Predicted dienelactone 92.2 0.16 3.5E-06 36.2 2.9 57 106-162 244-303 (365)
130 COG0657 Aes Esterase/lipase [L 92.1 0.46 9.9E-06 33.5 5.1 46 113-158 245-292 (312)
131 COG2939 Carboxypeptidase C (ca 91.6 0.38 8.3E-06 35.8 4.2 30 143-173 462-491 (498)
132 KOG2112 Lysophospholipase [Lip 90.9 0.28 6.2E-06 32.0 2.7 56 113-172 144-203 (206)
133 COG4287 PqaA PhoPQ-activated p 90.7 0.57 1.2E-05 33.6 4.3 63 109-174 325-388 (507)
134 KOG2100 Dipeptidyl aminopeptid 90.2 0.85 1.8E-05 36.5 5.3 65 109-174 677-748 (755)
135 PF04301 DUF452: Protein of un 87.1 0.87 1.9E-05 30.2 3.0 37 116-155 168-204 (213)
136 smart00824 PKS_TE Thioesterase 86.9 0.82 1.8E-05 29.6 3.0 59 110-169 150-211 (212)
137 PF07519 Tannase: Tannase and 86.7 3.1 6.6E-05 31.5 6.0 64 111-174 351-428 (474)
138 PF06028 DUF915: Alpha/beta hy 85.7 0.86 1.9E-05 31.2 2.6 58 113-171 184-253 (255)
139 PF02129 Peptidase_S15: X-Pro 84.3 1.1 2.3E-05 30.9 2.6 45 108-153 223-271 (272)
140 TIGR01840 esterase_phb esteras 83.9 0.77 1.7E-05 30.3 1.8 27 112-138 167-193 (212)
141 PF05576 Peptidase_S37: PS-10 80.3 8.9 0.00019 28.4 5.9 56 114-171 352-412 (448)
142 PRK10252 entF enterobactin syn 79.9 3 6.5E-05 35.7 4.1 50 109-159 1232-1281(1296)
143 PRK04940 hypothetical protein; 78.2 11 0.00023 24.5 5.3 52 115-171 126-178 (180)
144 cd08769 DAP_dppA_2 Peptidase M 74.5 10 0.00022 26.4 4.7 56 110-171 144-201 (270)
145 COG4553 DepA Poly-beta-hydroxy 72.8 6.6 0.00014 27.7 3.5 63 114-176 340-410 (415)
146 PF10503 Esterase_phd: Esteras 69.6 4 8.6E-05 27.4 1.9 25 114-138 170-194 (220)
147 cd08770 DAP_dppA_3 Peptidase M 66.0 22 0.00048 24.7 4.9 57 110-172 144-201 (263)
148 PF10605 3HBOH: 3HB-oligomer h 65.7 9.7 0.00021 29.7 3.4 44 111-154 552-604 (690)
149 cd08663 DAP_dppA_1 Peptidase M 65.5 26 0.00056 24.4 5.2 56 110-171 144-201 (266)
150 PF12740 Chlorophyllase2: Chlo 64.0 15 0.00033 25.4 3.8 48 112-159 153-211 (259)
151 PF05577 Peptidase_S28: Serine 63.8 9.2 0.0002 28.6 3.1 39 114-155 377-415 (434)
152 COG2830 Uncharacterized protei 62.0 5.2 0.00011 25.4 1.3 35 118-155 169-203 (214)
153 cd00281 DAP_dppA Peptidase M55 61.2 31 0.00068 24.0 4.9 56 110-171 143-200 (265)
154 PF06500 DUF1100: Alpha/beta h 59.4 12 0.00026 27.8 2.9 61 113-174 189-256 (411)
155 KOG2521 Uncharacterized conser 55.6 36 0.00078 24.8 4.7 63 113-175 225-292 (350)
156 PF06289 FlbD: Flagellar prote 55.4 16 0.00034 18.9 2.2 45 127-173 14-58 (60)
157 COG3946 VirJ Type IV secretory 54.4 39 0.00086 25.2 4.7 58 107-173 389-449 (456)
158 COG4813 ThuA Trehalose utiliza 51.3 20 0.00044 23.4 2.6 41 113-154 63-105 (261)
159 PF07224 Chlorophyllase: Chlor 50.5 40 0.00087 23.6 4.0 48 111-158 178-235 (307)
160 COG2808 PaiB Transcriptional r 50.3 46 0.001 22.0 4.1 61 113-173 71-134 (209)
161 KOG1283 Serine carboxypeptidas 45.4 14 0.00031 26.5 1.4 31 139-169 380-410 (414)
162 PF13709 DUF4159: Domain of un 44.8 56 0.0012 21.8 4.1 38 113-150 53-90 (207)
163 PF03403 PAF-AH_p_II: Platelet 42.8 19 0.00042 26.5 1.9 48 108-157 269-319 (379)
164 TIGR02069 cyanophycinase cyano 42.6 97 0.0021 21.4 5.1 52 117-173 2-55 (250)
165 COG0693 ThiJ Putative intracel 41.9 32 0.00069 22.2 2.6 34 140-173 65-99 (188)
166 PLN02733 phosphatidylcholine-s 41.4 23 0.00049 26.7 2.1 52 118-173 371-422 (440)
167 KOG3363 Uncharacterized conser 37.9 61 0.0013 20.7 3.2 36 135-174 105-140 (196)
168 COG4099 Predicted peptidase [G 36.8 28 0.00061 24.9 1.8 22 113-134 315-336 (387)
169 TIGR00067 glut_race glutamate 36.7 1.1E+02 0.0023 21.2 4.6 40 129-168 11-51 (251)
170 cd03148 GATase1_EcHsp31_like T 36.0 60 0.0013 22.1 3.3 33 140-173 95-129 (232)
171 COG0796 MurI Glutamate racemas 35.5 1.6E+02 0.0034 20.8 6.3 59 113-174 5-67 (269)
172 PF01751 Toprim: Toprim domain 35.5 39 0.00084 19.2 2.1 35 129-163 8-42 (100)
173 PF03295 Pox_TAA1: Poxvirus tr 34.2 38 0.00082 17.4 1.6 19 153-171 20-38 (63)
174 PF04951 Peptidase_M55: D-amin 33.8 34 0.00074 23.9 1.8 56 111-172 145-202 (265)
175 PHA00026 cp coat protein 33.6 32 0.00069 19.7 1.4 35 143-177 6-40 (129)
176 PF04814 HNF-1_N: Hepatocyte n 32.9 65 0.0014 21.0 2.8 22 154-175 111-132 (180)
177 COG1582 FlgEa Uncharacterized 32.6 81 0.0017 16.5 2.9 47 126-174 13-59 (67)
178 PRK00865 glutamate racemase; P 32.5 1.3E+02 0.0029 20.8 4.6 50 114-166 6-56 (261)
179 PF00650 CRAL_TRIO: CRAL/TRIO 32.1 26 0.00057 21.6 1.1 15 2-16 96-110 (159)
180 cd03145 GAT1_cyanophycinase Ty 32.0 1.6E+02 0.0035 19.8 5.2 53 115-172 1-55 (217)
181 TIGR00976 /NonD putative hydro 31.9 2E+02 0.0044 22.6 5.9 45 107-153 226-272 (550)
182 COG4635 HemG Flavodoxin [Energ 31.9 41 0.00089 21.5 1.8 60 114-174 1-74 (175)
183 TIGR03846 sulfopy_beta sulfopy 31.1 43 0.00093 21.7 1.9 41 113-153 59-100 (181)
184 cd03371 TPP_PpyrDC Thiamine py 29.7 54 0.0012 21.4 2.2 40 113-152 66-106 (188)
185 PF06107 DUF951: Bacterial pro 28.5 24 0.00052 18.0 0.3 28 141-170 29-56 (57)
186 PF12048 DUF3530: Protein of u 27.9 98 0.0021 22.2 3.4 67 106-173 239-309 (310)
187 cd02013 TPP_Xsc_like Thiamine 27.5 56 0.0012 21.4 2.0 39 114-152 72-110 (196)
188 cd06533 Glyco_transf_WecG_TagA 27.5 66 0.0014 20.6 2.3 33 113-147 46-78 (171)
189 PF08384 NPP: Pro-opiomelanoco 27.5 44 0.00095 16.1 1.1 14 142-155 30-43 (45)
190 PF03808 Glyco_tran_WecB: Glyc 27.3 1.4E+02 0.0031 19.1 3.8 34 113-148 48-81 (172)
191 cd02005 TPP_PDC_IPDC Thiamine 27.0 99 0.0021 20.0 3.1 15 114-128 69-83 (183)
192 cd06896 PX_PI3K_C2_gamma The p 26.7 1.4E+02 0.003 17.4 4.2 62 116-177 17-85 (101)
193 PF02089 Palm_thioest: Palmito 26.2 69 0.0015 22.6 2.3 36 113-148 5-44 (279)
194 PF10929 DUF2811: Protein of u 26.1 81 0.0018 16.1 1.9 23 153-175 21-43 (57)
195 cd02006 TPP_Gcl Thiamine pyrop 25.9 69 0.0015 21.1 2.2 41 113-153 75-115 (202)
196 PF04407 DUF531: Protein of un 25.8 1.9E+02 0.0041 18.6 4.8 48 116-167 3-56 (173)
197 cd03147 GATase1_Ydr533c_like T 25.5 1.1E+02 0.0023 20.9 3.1 33 140-173 93-127 (231)
198 PF12641 Flavodoxin_3: Flavodo 25.4 1.9E+02 0.0041 18.4 4.1 58 115-172 41-98 (160)
199 KOG4628 Predicted E3 ubiquitin 25.2 60 0.0013 23.7 1.9 53 113-173 214-266 (348)
200 COG3411 Ferredoxin [Energy pro 24.5 1.2E+02 0.0026 15.9 2.9 32 142-174 18-49 (64)
201 PF08513 LisH: LisH; InterPro 24.2 71 0.0015 13.1 2.1 14 160-173 1-14 (27)
202 cd00707 Pancreat_lipase_like P 23.6 39 0.00085 23.6 0.8 18 1-18 132-149 (275)
203 cd02009 TPP_SHCHC_synthase Thi 23.5 73 0.0016 20.4 2.0 39 113-151 68-106 (175)
204 cd03372 TPP_ComE Thiamine pyro 23.4 94 0.002 20.1 2.5 41 114-154 60-101 (179)
205 cd02003 TPP_IolD Thiamine pyro 23.3 1.2E+02 0.0025 20.1 3.0 40 113-152 66-105 (205)
206 KOG3847 Phospholipase A2 (plat 23.1 3E+02 0.0065 20.3 4.8 65 106-172 280-347 (399)
207 PRK07313 phosphopantothenoylcy 22.6 2.3E+02 0.005 18.5 4.8 60 113-172 113-180 (182)
208 cd02001 TPP_ComE_PpyrDC Thiami 22.5 76 0.0017 20.0 1.9 40 114-153 60-100 (157)
209 cd02004 TPP_BZL_OCoD_HPCL Thia 22.0 1.5E+02 0.0032 18.8 3.2 41 113-153 66-106 (172)
210 PRK06007 fliF flagellar MS-rin 21.5 69 0.0015 25.1 1.8 17 156-172 524-540 (542)
211 PF09949 DUF2183: Uncharacteri 21.4 1.6E+02 0.0036 17.0 2.9 17 135-151 58-74 (100)
212 cd01833 XynB_like SGNH_hydrola 21.1 2.1E+02 0.0046 17.5 5.1 58 116-173 44-113 (157)
213 TIGR03230 lipo_lipase lipoprot 20.9 52 0.0011 25.0 1.0 18 1-18 139-156 (442)
214 TIGR03101 hydr2_PEP hydrolase, 20.8 53 0.0012 22.9 1.0 16 1-16 119-134 (266)
215 cd02014 TPP_POX Thiamine pyrop 20.6 80 0.0017 20.2 1.8 40 113-152 69-108 (178)
216 smart00667 LisH Lissencephaly 20.6 88 0.0019 12.9 2.3 17 158-174 2-18 (34)
217 COG3910 Predicted ATPase [Gene 20.6 1.5E+02 0.0033 19.9 2.9 48 116-173 179-227 (233)
218 COG4814 Uncharacterized protei 20.4 3.3E+02 0.0071 19.3 4.5 59 113-172 216-286 (288)
219 cd02010 TPP_ALS Thiamine pyrop 20.2 84 0.0018 20.2 1.8 17 155-171 142-158 (177)
220 KOG3170 Conserved phosducin-li 20.1 91 0.002 20.9 1.8 17 109-125 157-173 (240)
221 KOG4584 Uncharacterized conser 20.0 1.3E+02 0.0028 21.6 2.6 44 114-157 270-315 (348)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.91 E-value=3.4e-23 Score=142.30 Aligned_cols=173 Identities=77% Similarity=1.370 Sum_probs=110.0
Q ss_pred CCcccccceEEeeCchhhhhccCCCCccchhhhhHHHHHhhhhhhHHHHHhhcChHHHHHHHHHhcCCCCCCCHHHHHHH
Q 029700 1 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKI 80 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (189)
+||++|++||++++..........+....+....+...+.....+..++........++..+...+.+.....++..+.+
T Consensus 122 ~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (294)
T PLN02824 122 DAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAI 201 (294)
T ss_pred hChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHH
Confidence 48999999999998653221111111111122222222222222222222223333444455544554455566666666
Q ss_pred hccCCCCCHHHHHHHHHHhhCCCCccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChh
Q 029700 81 LQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPH 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~ 160 (189)
......+.....+..+............+.++++|||+|+|++|.+++.+.++.+++.++++++++++++||++++|+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~ 281 (294)
T PLN02824 202 LRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLPGVGHCPQDEAPE 281 (294)
T ss_pred HhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcCCccceEEeCCCCCChhhhCHH
Confidence 55444444444444433222222334568899999999999999999999999999988989999999999999999999
Q ss_pred hHHHHHHHHHHhc
Q 029700 161 LVNPLVESFVTRH 173 (189)
Q Consensus 161 ~~~~~i~~fl~~~ 173 (189)
+|++.|.+|++++
T Consensus 282 ~~~~~i~~fl~~~ 294 (294)
T PLN02824 282 LVNPLIESFVARH 294 (294)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999763
No 2
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.88 E-value=2.9e-21 Score=135.89 Aligned_cols=118 Identities=33% Similarity=0.660 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHhhCCCCccccCCCCCCCeEEEecCCCCCCCchh----
Q 029700 56 ESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEL---- 131 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~---- 131 (189)
..++..+...+.....+.++..+.+............+..........+....+.+|++|||||+|++|.++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~ 314 (360)
T PLN02679 235 DNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGK 314 (360)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHH
Confidence 3444455555555555667777666554444544455444433222233345688999999999999999988763
Q ss_pred -hhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 132 -GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 132 -~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.+.+.+|++++++++++||++++|+|++|++.|.+||.+.
T Consensus 315 ~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 315 YFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred HHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 345677789999999999999999999999999999999864
No 3
>PLN02578 hydrolase
Probab=99.81 E-value=2.2e-18 Score=121.20 Aligned_cols=115 Identities=30% Similarity=0.615 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHh-h---CCCCccccCCCCCCCeEEEecCCCCCCCchh
Q 029700 56 ESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICY-S---GGPLPEELLPQVKCPVLIAWGDKDPWEPIEL 131 (189)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~ 131 (189)
..++..+...+.+....++...+.+.....++.....+...... . ......+.+.++++|+++|+|++|.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~~~ 314 (354)
T PLN02578 235 SRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGPAK 314 (354)
T ss_pred HHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCHHH
Confidence 33444444555555556666666665554555554444443321 1 1233456688999999999999999999999
Q ss_pred hhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 132 GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
.+.+++.+|+++++++ ++||+++.|+|++|++.|.+|+.
T Consensus 315 ~~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 315 AEKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 9999999999999999 58999999999999999999985
No 4
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.80 E-value=1.7e-18 Score=116.83 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=63.8
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
+....+.++++|||+|+|++|.+++.+..+.+++.++++++++++++||++++|+|+.|++.|.+|-++
T Consensus 187 ~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 187 DLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred ccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 446678899999999999999999999999999999999999999999999999999999999999654
No 5
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.76 E-value=6.8e-19 Score=121.36 Aligned_cols=68 Identities=37% Similarity=0.685 Sum_probs=62.8
Q ss_pred cccCCCCC-CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 106 EELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
...+.++. ||+|||||+.|+++|.+.+..+++.+|+++++++++|||.+|+|+|+++++.|..|+++.
T Consensus 256 ~~~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 256 LSLIKKIWKCPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHhhccccCCceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 44566776 999999999999999999999999889999999999999999999999999999999875
No 6
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.75 E-value=4.9e-18 Score=116.88 Aligned_cols=69 Identities=12% Similarity=0.193 Sum_probs=59.5
Q ss_pred ccCCCCCCCeEEEecCCCCCCCc-hhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccC
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPI-ELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~-~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
..+.+++||||+|+|++|.++++ ...+.+.+.++++++++++++||++++|+|++|++.|.+|+.+...
T Consensus 222 ~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 222 QWLATSDVPKLLINAEPGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred HHhccCCCCeEEEeccCCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhcc
Confidence 44788999999999999999944 4445556668899999999999999999999999999999987653
No 7
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.74 E-value=3.8e-17 Score=111.78 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=62.3
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...++++++|+|+|+|++|.+++++.++.+++.+|++++++++++||++++|+|+.|++.|.+||.
T Consensus 216 ~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 216 TARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred HHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 445789999999999999999999999999999999999999999999999999999999999996
No 8
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.73 E-value=1.2e-16 Score=106.71 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=61.9
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHH
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
+....+.++++|+++|+|++|.+++++..+.+++.+|++++++++++||++++|+|++|++.|.+|+
T Consensus 179 ~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 179 DLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred cHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 3455678999999999999999999999898988899999999999999999999999999999985
No 9
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.71 E-value=5.4e-17 Score=108.71 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=80.1
Q ss_pred CCCHHHHHHHhccCCCCCHHHHHHHHHHhhCCC--CccccCCCCCCCeEEEecCCCCCCCch-hhhhhcccCCCc-cEEE
Q 029700 71 QVTEELVEKILQPGLETGAADVFLEFICYSGGP--LPEELLPQVKCPVLIAWGDKDPWEPIE-LGRAYGNFDSVE-DFIV 146 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~i~~P~lii~g~~D~~~~~~-~~~~~~~~~~~~-~~~~ 146 (189)
..+.+.++.+...+...+ .....++++.+.+. .....+.++++||++|||+.|.+++.. .++.+++..|+. +.++
T Consensus 215 w~t~edi~~~~~~f~~~g-~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv 293 (322)
T KOG4178|consen 215 WLTEEDIAFYVSKFQIDG-FTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVV 293 (322)
T ss_pred hhhHHHHHHHHhcccccc-ccccchhhHHHhhCchhccccccccccceEEEEecCcccccchhHHHHHHHhhccccceEE
Confidence 456778888877765544 45555555544433 235668899999999999999988765 566677888877 7788
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 147 LPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 147 l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
++|+||+++.|+|++|++.|.+|+.+.
T Consensus 294 ~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 294 IEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred ecCCcccccccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 10
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.69 E-value=2e-16 Score=107.96 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=63.2
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccC
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
...+++++||||+|+|++|.+++++..+.+.+.+|+++++++++ ||++++|+|+++++.|.+|+.+..+
T Consensus 200 ~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 200 IHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAEERQ 268 (276)
T ss_pred hhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhhh
Confidence 34578999999999999999999999999999999999999985 9999999999999999999987653
No 11
>PRK07581 hypothetical protein; Validated
Probab=99.69 E-value=5e-16 Score=108.95 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=65.5
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCC-CCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
+....+.+|+||||+|+|++|.+++++..+.+++.+|+++++++++ +||++++|+|+.++..|.+||.+.-
T Consensus 266 d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 266 DLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999998 9999999999999999999998753
No 12
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.68 E-value=7.1e-17 Score=116.12 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=60.5
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCC-CChhhHHHHHHHHHHhc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTRH 173 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~-e~p~~~~~~i~~fl~~~ 173 (189)
+.+|++|||+|+|++|.++|++.++.+++.+|++++++++++||++++ |+|+.|++.|.+|+...
T Consensus 414 ~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 414 RDQLKCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred HHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 347999999999999999999999999999999999999999999995 99999999999999653
No 13
>PRK06489 hypothetical protein; Provisional
Probab=99.68 E-value=4.8e-16 Score=109.75 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=63.4
Q ss_pred CCCccccCCCCCCCeEEEecCCCCCCCchhh--hhhcccCCCccEEEcCCC----CCCCCCCChhhHHHHHHHHHHhcc
Q 029700 102 GPLPEELLPQVKCPVLIAWGDKDPWEPIELG--RAYGNFDSVEDFIVLPNV----GHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 102 ~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~--~~~~~~~~~~~~~~l~~~----gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
..+....+.+|++|||+|+|++|.+++++.+ +.+++.+|+++++++++| ||+++ |+|++|++.|.+||.+..
T Consensus 281 ~~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 281 DYNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred ccChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhcc
Confidence 3344667899999999999999999998865 778899999999999996 99997 899999999999998653
No 14
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.67 E-value=9.4e-16 Score=105.04 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=54.0
Q ss_pred CCCeEEEecCCCCCCCch-hhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIE-LGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~-~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
++|||+|+|++|.++++. ..+.+++.+|++++++++++||++++|+|++|++.|.+||
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 899999999999987554 6788999999999999999999999999999999999997
No 15
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=102.12 Aligned_cols=172 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCcccccceEEeeCchhhhhccCCCCccchhhhhH---HHHH-hhhhhhHHHHHhhcChHHHHHHHHHhcC-CCCCCCHH
Q 029700 1 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSF---QNLL-RNTAAGKLFYKMVATSESVRNILCQCYN-DTSQVTEE 75 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 75 (189)
+||+||++|||++|.+.....-..+....+...+. .... ...++........-....+..+....+. .++...++
T Consensus 180 KyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed 259 (365)
T KOG4409|consen 180 KYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEED 259 (365)
T ss_pred hChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhH
Confidence 59999999999999987653311111111111111 1111 0011111001111122223222222222 12233444
Q ss_pred HHHHHh-ccC-CCCCHHHHHHHHHH--hhCCCCccccCCCCC--CCeEEEecCCCCCCCchhhhhhcc--cCCCccEEEc
Q 029700 76 LVEKIL-QPG-LETGAADVFLEFIC--YSGGPLPEELLPQVK--CPVLIAWGDKDPWEPIELGRAYGN--FDSVEDFIVL 147 (189)
Q Consensus 76 ~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~i~--~P~lii~g~~D~~~~~~~~~~~~~--~~~~~~~~~l 147 (189)
.+..|. ... .++....++..+.. ...+....+.+..++ ||+++|+|++|. +....+..+.+ ....++.+++
T Consensus 260 ~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD~~~g~~~~~~~~~~~~~~~~v 338 (365)
T KOG4409|consen 260 FLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MDKNAGLEVTKSLMKEYVEIIIV 338 (365)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-ccchhHHHHHHHhhcccceEEEe
Confidence 434433 322 33444344444432 222333344455555 999999999985 45555555555 3445899999
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 148 PNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 148 ~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+++||++..++|+.|++.|.++++..
T Consensus 339 ~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 339 PGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred cCCCceeecCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999753
No 16
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.66 E-value=2.8e-15 Score=102.30 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...+.++++|+++|+|++|.+++++..+.+.+.++++++++++++||++++|+|+++++.|.+|+.
T Consensus 213 ~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 213 NRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred hhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 345788999999999999999999999999988999999999999999999999999999999984
No 17
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.66 E-value=6.2e-16 Score=109.73 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=64.4
Q ss_pred ccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCc----cEEEcC-CCCCCCCCCChhhHHHHHHHHHHhccC
Q 029700 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE----DFIVLP-NVGHCPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 105 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~----~~~~l~-~~gH~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
....+.+|+||||+|+|++|.+++++..+.+++.++++ ++++++ ++||++++|+|++|++.|.+||.+...
T Consensus 301 ~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 301 LAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred HHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhhh
Confidence 46778999999999999999999999999999999887 677775 899999999999999999999988654
No 18
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.65 E-value=2.8e-15 Score=101.17 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=61.9
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..+..+++|+|+|+|++|..++.+..+.+++.+|++++++++++||++++|+|+++++.|.+||.+
T Consensus 189 ~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 189 EKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred cccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999999999999999999999999999999999975
No 19
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.65 E-value=5.8e-15 Score=104.22 Aligned_cols=62 Identities=21% Similarity=0.463 Sum_probs=56.7
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
.++++|||+|||+.|.+++.+..+.+++. ++++++++++|||++++|+|+++++.|.+||.+
T Consensus 322 ~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 322 KNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred ccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 46899999999999999999888888876 589999999999999999999999999999863
No 20
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=95.03 Aligned_cols=82 Identities=28% Similarity=0.347 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 92 VFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
+..++....+...++..+.+++|||||++|+.|++++......+....+.+++++.|.++|.+|+..+++|+..+.+||+
T Consensus 195 ~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~ 274 (277)
T KOG2984|consen 195 VVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLK 274 (277)
T ss_pred HHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHh
Confidence 33344444555567788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 029700 172 RH 173 (189)
Q Consensus 172 ~~ 173 (189)
+.
T Consensus 275 ~~ 276 (277)
T KOG2984|consen 275 ST 276 (277)
T ss_pred cc
Confidence 64
No 21
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.64 E-value=1.7e-15 Score=107.11 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC----CccEEEcCC-CCCCCCCCChhhHHHHHHHHHHh
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS----VEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~l~~-~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
+....+.+|++|||+|+|+.|.+++++..+.+++.++ +++++++++ +||++++|+|+++++.|.+||.+
T Consensus 314 dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 314 SLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 3466788999999999999999999999888888775 689999985 89999999999999999999975
No 22
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.63 E-value=2.5e-15 Score=105.47 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=60.4
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCC-CCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
.+.+|++|||+|+|++|.+++++..+.+.+.+ |+++++++++ +||++++|+|++|++.|.+||.+..
T Consensus 272 ~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 272 DPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTG 340 (343)
T ss_pred ChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhcc
Confidence 37899999999999999999988888887766 7999999985 9999999999999999999998653
No 23
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.62 E-value=5.6e-15 Score=102.09 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=59.3
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCcc---EEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED---FIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~---~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
..+.++++||++|+|++|.+++... +.+++.+++++ +++++++||++++|+|++|++.|.+||+++
T Consensus 233 ~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 233 AVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HhhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 3468899999999999999998766 77888888876 889999999999999999999999999764
No 24
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.60 E-value=4e-15 Score=104.80 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=61.3
Q ss_pred ccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEE-----EcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI-----VLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 105 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-----~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
..+.+++|++|||+|+|++|.+++++..+.+++.+|+++++ +++++||++++|+|++|++.|.+||.
T Consensus 280 ~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 280 LTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred HHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 45778999999999999999999999999999999998876 56789999999999999999999984
No 25
>PLN02965 Probable pheophorbidase
Probab=99.60 E-value=2.1e-15 Score=101.82 Aligned_cols=66 Identities=14% Similarity=-0.059 Sum_probs=62.3
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.++++|+++|+|++|.++++...+.+++.+|+++++++++|||++++|+|++|++.|.+|+...
T Consensus 188 ~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 188 NPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred hhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999999999999999999999999999998764
No 26
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.58 E-value=3.2e-15 Score=105.19 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=60.9
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCCCCCCChhh----HHHHHHHHHHhcc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHL----VNPLVESFVTRHA 174 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~~~~e~p~~----~~~~i~~fl~~~~ 174 (189)
...+.++++|+|+|+|++|.++++...+.+.+.+ ++.++++++++||+++.|+|++ +++.|.+||.++.
T Consensus 272 ~~~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 272 EMQLEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHhcccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999988887765 5789999999999999999987 8889999998764
No 27
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.57 E-value=1e-13 Score=99.11 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=57.9
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccCC
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 176 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 176 (189)
+....+.+|++||++|+|++|.+.+ .....+.+.. +.+++++++++||++++|+|+.|++.|.+|+......
T Consensus 316 ~~~~~l~~I~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 316 PLLESASEWKVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred hHhhhcccCCCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccC
Confidence 3355688899999999999998765 4444444433 4689999999999999999999999999999876543
No 28
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.55 E-value=3.2e-14 Score=95.31 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=61.5
Q ss_pred ccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 105 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
....+.++++|+++++|++|.+++.+..+.+.+.+++.++++++++||++++|+|+.+++.|.+|++
T Consensus 185 ~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 185 FRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred HHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 3456788999999999999999999988888888899999999999999999999999999999984
No 29
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.52 E-value=2.6e-13 Score=90.92 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=52.5
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
+....+.+++||+++|+|++|..+. .+++. .+++++++++|||++++|+|+++++.|.+|+.+
T Consensus 179 ~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 179 DLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred cHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 4456788999999999999998542 22222 378999999999999999999999999999975
No 30
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.52 E-value=2.9e-13 Score=90.55 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=57.3
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...+.++++|+++|+|++|..++ ...+.+++..+++++++++++||++++|+|+++++.|.+||+
T Consensus 187 ~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 187 WPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred HHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 45577899999999999998764 566778888899999999999999999999999999999983
No 31
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.52 E-value=2.7e-13 Score=96.33 Aligned_cols=64 Identities=33% Similarity=0.551 Sum_probs=55.5
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
...+.+++||+|+|+|++|.+++....+.+ .++.++.+++++||++++|+|+++++.|.+||.+
T Consensus 307 ~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 307 RDRLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred HHHHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 345778999999999999999987766544 3468899999999999999999999999999975
No 32
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.51 E-value=1.8e-13 Score=111.73 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=60.6
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCC------------ccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV------------EDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~------------~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
+....+.++++|||+|+|++|.+++ ..++.+.+.+++ ++++++++|||++++|+|+.|++.|.+||.
T Consensus 1559 dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~ 1637 (1655)
T PLN02980 1559 SLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLT 1637 (1655)
T ss_pred hHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHH
Confidence 3456789999999999999999775 555566665554 489999999999999999999999999999
Q ss_pred hccCCC
Q 029700 172 RHATPP 177 (189)
Q Consensus 172 ~~~~~~ 177 (189)
+...+.
T Consensus 1638 ~~~~~~ 1643 (1655)
T PLN02980 1638 RLHNSS 1643 (1655)
T ss_pred hccccC
Confidence 876443
No 33
>PHA02857 monoglyceride lipase; Provisional
Probab=99.49 E-value=4.2e-13 Score=91.66 Aligned_cols=68 Identities=15% Similarity=0.298 Sum_probs=60.0
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCCCCCCCCCCCh---hhHHHHHHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDEAP---HLVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~~gH~~~~e~p---~~~~~~i~~fl~~~ 173 (189)
...+.++++|||+|+|++|.+++++..+.+.+.+ ++.++++++++||+++.|++ +++.+.|.+||.+.
T Consensus 202 ~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 202 RKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 4558899999999999999999999998887765 57899999999999999977 57889999999875
No 34
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.48 E-value=6.4e-13 Score=89.41 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=61.3
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
.....|||++.|.++..++.+....+.+.+|.++++.+++||||+|.|+|+.|.+.|.+|+....
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEPE 314 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhcccC
Confidence 67789999999999999999999999999999999999999999999999999999999998653
No 35
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.45 E-value=3.7e-13 Score=90.68 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=62.2
Q ss_pred ccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 105 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
....+.++++|+++++|++|.+++++..+.+.+.+++++++.++++||++++|+|+++++.|.+||.
T Consensus 190 ~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 190 VSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLK 256 (257)
T ss_pred cHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhc
Confidence 3456788999999999999999999999989888999999999999999999999999999999985
No 36
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.44 E-value=1.4e-13 Score=90.80 Aligned_cols=60 Identities=32% Similarity=0.517 Sum_probs=54.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPL 165 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~ 165 (189)
...++++++|+++|+|++|.+++.+..+.+.+..+++++++++++||++++|+|++|++.
T Consensus 169 ~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 169 SEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred cccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 345678899999999999999998899999888899999999999999999999999864
No 37
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.39 E-value=3.4e-11 Score=79.75 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=92.4
Q ss_pred CCcccccceEEeeCchhhhhccCCCCccchhhhhHHHHHhhhhhhHHHHHhhcChHHHHHHHHHhcCCCC-CCCHHHHHH
Q 029700 1 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTS-QVTEELVEK 79 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (189)
.||+||.|||||++.+... .| .. +.........+.............+...|+... .-..++++.
T Consensus 142 ~hp~rV~GLvLIn~~~~a~-----gw-----ie----w~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~ 207 (326)
T KOG2931|consen 142 NHPERVLGLVLINCDPCAK-----GW-----IE----WAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQE 207 (326)
T ss_pred cChhheeEEEEEecCCCCc-----hH-----HH----HHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHH
Confidence 4899999999999976432 11 11 111111111111111122233344455555432 225677777
Q ss_pred HhccCC---CCCHHHHHHHHHHhhCCCCccccCC----CCCCCeEEEecCCCCCCCchhhhhhccc-CCCccEEEcCCCC
Q 029700 80 ILQPGL---ETGAADVFLEFICYSGGPLPEELLP----QVKCPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVG 151 (189)
Q Consensus 80 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~----~i~~P~lii~g~~D~~~~~~~~~~~~~~-~~~~~~~~l~~~g 151 (189)
|.+... .+....-++..+ ..+.++..... .++||||++.|++.+.+.... +--.+. -.+.++..+.+||
T Consensus 208 Yr~~l~~~~N~~Nl~~fl~ay--n~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~~vv-~~n~~Ldp~~ttllk~~d~g 284 (326)
T KOG2931|consen 208 YRQHLGERLNPKNLALFLNAY--NGRRDLSIERPKLGTTLKCPVLLVVGDNSPHVSAVV-ECNSKLDPTYTTLLKMADCG 284 (326)
T ss_pred HHHHHHhcCChhHHHHHHHHh--cCCCCccccCCCcCccccccEEEEecCCCchhhhhh-hhhcccCcccceEEEEcccC
Confidence 776543 333444444443 33333332222 566999999999988754322 222222 2357888899999
Q ss_pred CCCCCCChhhHHHHHHHHHHhcc
Q 029700 152 HCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 152 H~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
-.+..++|.++++.+.-||+...
T Consensus 285 ~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 285 GLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred CcccccCchHHHHHHHHHHccCC
Confidence 99999999999999999998753
No 38
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.35 E-value=1.9e-12 Score=88.49 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=58.3
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...+.+++||+++++|++|.+ ++...+.+++.++++++++++++||++++|+|+++++.|.+||+
T Consensus 224 ~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 224 TDKLSEIKVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHhhccCCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 455788999999999999985 56777888888899999999999999999999999999999984
No 39
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.34 E-value=1.9e-12 Score=90.64 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=64.3
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCCCCCCChhh----HHHHHHHHHHhccCCCcc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHL----VNPLVESFVTRHATPPAS 179 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~~~~e~p~~----~~~~i~~fl~~~~~~~~~ 179 (189)
...+.++++|+|||+|++|.+++++..+.+.+.+ ++.++++++++||++++++|+. +.+.|.+||.+.....+.
T Consensus 244 ~~~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~~ 323 (330)
T PLN02298 244 GKKLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGKAT 323 (330)
T ss_pred HHhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3457889999999999999999999998877665 4789999999999999999864 667888999988755555
Q ss_pred hhhh
Q 029700 180 VSAA 183 (189)
Q Consensus 180 ~~~~ 183 (189)
++..
T Consensus 324 ~~~~ 327 (330)
T PLN02298 324 PSED 327 (330)
T ss_pred Cccc
Confidence 4443
No 40
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.34 E-value=1.2e-13 Score=91.55 Aligned_cols=62 Identities=26% Similarity=0.508 Sum_probs=57.7
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVE 167 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~ 167 (189)
...+..+++|+++++|++|.++|+.....+++.+|+.++++++++||+.+++.|+++++.|.
T Consensus 168 ~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 168 SPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 44577899999999999999999999999999999999999999999999999999999885
No 41
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.31 E-value=9.1e-12 Score=83.05 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=79.7
Q ss_pred CCcccccceEEeeCchhhhhccCCCCccchhhhhHHHHHhhhhhhHHHHHhhcChHHHHHHHHHhcCCCCC-CCHHHHHH
Q 029700 1 MEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQ-VTEELVEK 79 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (189)
+||+||.||||+++.+...+ +..++..-+.. ..+....-.....+..+...|+.... ...++++.
T Consensus 119 ~~p~~V~GLiLvn~~~~~~g----------w~Ew~~~K~~~----~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~ 184 (283)
T PF03096_consen 119 KHPERVLGLILVNPTCTAAG----------WMEWFYQKLSS----WLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQT 184 (283)
T ss_dssp HSGGGEEEEEEES---S-------------HHHHHHHHHH-----------CTTS-HHHHHHHHHS-HHHHHCT-HHHHH
T ss_pred cCccceeEEEEEecCCCCcc----------HHHHHHHHHhc----ccccccccccchHHhhhhcccccccccccHHHHHH
Confidence 48999999999999864321 12222111111 00000111122222333333332111 14456666
Q ss_pred HhccCCC-CCHHHHHHHHHHhhCCCCccccCCCCCCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCCCCCCCCCC
Q 029700 80 ILQPGLE-TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDE 157 (189)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~~gH~~~~e 157 (189)
+...... .........+-....+.+....+....||+|++.|+.++.... ..+.-.+.- .+.++..+++||=++..|
T Consensus 185 yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~~~-vv~~ns~Ldp~~ttllkv~dcGglV~eE 263 (283)
T PF03096_consen 185 YRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHVDD-VVEMNSKLDPTKTTLLKVADCGGLVLEE 263 (283)
T ss_dssp HHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTHHH-HHHHHHHS-CCCEEEEEETT-TT-HHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcchhh-HHHHHhhcCcccceEEEecccCCccccc
Confidence 6655433 2222222222234566666777788889999999999876543 222223332 357888999999999999
Q ss_pred ChhhHHHHHHHHHHhc
Q 029700 158 APHLVNPLVESFVTRH 173 (189)
Q Consensus 158 ~p~~~~~~i~~fl~~~ 173 (189)
+|+++++.+.=||+..
T Consensus 264 qP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 264 QPGKLAEAFKLFLQGM 279 (283)
T ss_dssp -HHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHccC
Confidence 9999999999999864
No 42
>PLN02511 hydrolase
Probab=99.28 E-value=4.7e-12 Score=90.28 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=59.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhh-hhhcccCCCccEEEcCCCCCCCCCCChhh------HHHHHHHHHHhcc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEAPHL------VNPLVESFVTRHA 174 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~-~~~~~~~~~~~~~~l~~~gH~~~~e~p~~------~~~~i~~fl~~~~ 174 (189)
...+.+|++|||+|+|++|++++.... ..+.+.+|++++++++++||+.++|+|+. +++.|.+||....
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 456889999999999999999988765 34666789999999999999999999986 5899999998764
No 43
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.21 E-value=5.4e-11 Score=81.11 Aligned_cols=63 Identities=17% Similarity=0.038 Sum_probs=57.3
Q ss_pred CCCC-CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 109 LPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 109 l~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..++ ++|+++|+|++|.++|++..+.+.+.+++++++.++ +||.+++++|+++++.|.++...
T Consensus 206 ~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 206 TGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred ccccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 3455 799999999999999999999999999999999997 89999999999999999998754
No 44
>PRK10749 lysophospholipase L2; Provisional
Probab=99.20 E-value=2.3e-11 Score=85.13 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=56.7
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccC-------CCccEEEcCCCCCCCCCCCh---hhHHHHHHHHHHhc
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-------SVEDFIVLPNVGHCPQDEAP---HLVNPLVESFVTRH 173 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-------~~~~~~~l~~~gH~~~~e~p---~~~~~~i~~fl~~~ 173 (189)
..+.++++|+|+|+|++|.+++++..+.+.+.+ +++++++++||||.++.|.+ +.+.+.|.+||.++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 346789999999999999999998888776644 45689999999999999886 66888999999764
No 45
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.16 E-value=7e-11 Score=84.21 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=59.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC--CccEEEcCCCCCCCCCC-ChhhHHHHHHHHHHhcc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQDE-APHLVNPLVESFVTRHA 174 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~l~~~gH~~~~e-~p~~~~~~i~~fl~~~~ 174 (189)
...+.+|++|+|+|+|++|.+++++.++.+.+.++ +.+++++++++|.+++| +++++.+.|.+||.+..
T Consensus 317 ~~~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 317 TRNFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred HhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999998888766543 47899999999999877 79999999999998764
No 46
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.14 E-value=1.6e-09 Score=79.53 Aligned_cols=56 Identities=23% Similarity=0.167 Sum_probs=51.1
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHL 161 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~ 161 (189)
...+.+|++|+++|+|++|.+++++....+.+.+++.+..+++++||.+++++|..
T Consensus 408 ~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 408 RLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred ecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCCC
Confidence 45688999999999999999999999999888899999999999999999998853
No 47
>PRK05855 short chain dehydrogenase; Validated
Probab=99.12 E-value=2.2e-10 Score=86.12 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccC
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
+..+++|+|+|+|++|.++++...+.+++.+++.++++++ +||++++|+|+++++.|.+|+.+...
T Consensus 229 ~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~~ 294 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAVEG 294 (582)
T ss_pred cCCccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhccC
Confidence 5668999999999999999999999998888999988887 69999999999999999999987653
No 48
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.12 E-value=1.8e-09 Score=77.70 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+++++|+|+|+|++|.++|++.++.+++.++++++++++++ ++.+.++++.+.|.+||.+.
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999988999999999985 56789999999999999864
No 49
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.11 E-value=6.7e-10 Score=88.07 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=61.1
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccE-EEcCCCCCCCCC---CChhhHHHHHHHHHHhccCC
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDF-IVLPNVGHCPQD---EAPHLVNPLVESFVTRHATP 176 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~l~~~gH~~~~---e~p~~~~~~i~~fl~~~~~~ 176 (189)
.+++|++|+|+|+|++|.+++++..+.+++.+|++++ .+++++||+.++ ..++++...|.+||.+....
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~ 364 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGD 364 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccC
Confidence 5899999999999999999999999999999999997 678999999775 46788999999999987643
No 50
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.93 E-value=1.4e-09 Score=75.45 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred ccCCCC-CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 107 ELLPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 107 ~~l~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
..+.++ ++|+|+|+|++|.++|.+.++.+++.+++.++++++++||+++. |+ ..+.|.+|+.
T Consensus 241 ~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~~--~~-~~~~i~~~~~ 303 (306)
T TIGR01249 241 DNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAFD--PN-NLAALVHALE 303 (306)
T ss_pred HhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCCC--hH-HHHHHHHHHH
Confidence 456677 69999999999999999999999999999999999999999863 22 3355555554
No 51
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.86 E-value=4.8e-08 Score=67.37 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=54.7
Q ss_pred cccCCCCCCCeEEEecCCCCCCC-chhhhh-hccc-CCCccEEEcCCCCCCCCCCC-h--hhHHHHHHHHHHhcc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEP-IELGRA-YGNF-DSVEDFIVLPNVGHCPQDEA-P--HLVNPLVESFVTRHA 174 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~-~~~~~~-~~~~-~~~~~~~~l~~~gH~~~~e~-p--~~~~~~i~~fl~~~~ 174 (189)
......+++|+||++|+.|.+++ .+.... +.+. .++.++++++|+.|-++.|. . +++.+.+.+|+.+..
T Consensus 221 ~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 221 LRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred hhccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 44467889999999999999998 454443 3333 67789999999999998765 4 788899999998764
No 52
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.85 E-value=3e-09 Score=71.19 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=56.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCCCCC----CChhhHHHHHHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQD----EAPHLVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~~~~----e~p~~~~~~i~~fl~~~ 173 (189)
...+.++++|.+|++|+.|.++.+...+.+.+.. .+-++.++||.-|.++. |+-+.|...|.+||.+.
T Consensus 239 e~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 239 EKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHhcccccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 5568899999999999999999999999887663 46789999999999885 34466778888999764
No 53
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.85 E-value=1e-08 Score=59.19 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 112 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
-..|+|+|.++.|++.|.+.++.+++.+++++++++++.||......-.-+.+.+.+||...
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G 94 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLDG 94 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHcC
Confidence 35999999999999999999999999999999999999999998755567889999999854
No 54
>PRK10985 putative hydrolase; Provisional
Probab=98.83 E-value=7.7e-09 Score=72.38 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=57.1
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCCh-----hhHHHHHHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-----HLVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p-----~~~~~~i~~fl~~~ 173 (189)
...+++|++|+++|+|++|++++++..+.+.+..+++++++++++||+.++|.. -..-+.+.+|+...
T Consensus 248 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 248 LPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred HHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 456789999999999999999998888877777889999999999999998752 35667788888654
No 55
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.81 E-value=4.8e-08 Score=62.64 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=56.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCCCCC-CChhhHHHHHHHHHHh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTR 172 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~~~~-e~p~~~~~~i~~fl~~ 172 (189)
...+..|..|++|+.|.+|..++.+.+..+...+ .+-++.+++++||.+.. ++.|.+.+.|..||++
T Consensus 174 ~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 174 RRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred HhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 3447899999999999999999999998876653 34689999999998775 5679999999999963
No 56
>PLN02872 triacylglycerol lipase
Probab=98.79 E-value=1.8e-08 Score=71.98 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCC--CCCeEEEecCCCCCCCchhhhhhcccCCC-ccEEEcCCCCCC---CCCCChhhHHHHHHHHHHhcc
Q 029700 109 LPQV--KCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHC---PQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i--~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~l~~~gH~---~~~e~p~~~~~~i~~fl~~~~ 174 (189)
+.++ ++|+++++|++|.+++++..+.+.+.+++ .+++.++++||. ...|.|+++.+.|.+||.+..
T Consensus 319 l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 319 LSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred cccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 5677 58999999999999999888888777776 688889999995 556999999999999998643
No 57
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.77 E-value=5.3e-08 Score=67.23 Aligned_cols=67 Identities=25% Similarity=0.277 Sum_probs=58.8
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCcc-EEEcC-CCCCCCCCCChhhHHHHHHHHHHh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLP-NVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~-~~~l~-~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
...|++|++|+|++.=+.|.++|++..+.+.+.++.+. +++|+ ..||-.++...+.+...|..||..
T Consensus 299 ~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 299 TAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 44589999999999999999999999999998888777 76664 579999999999999999999974
No 58
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.76 E-value=2.2e-08 Score=70.22 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCCC--CCCeEEEecCCCCCCCchhhhhhccc--CCCccEEEcCCCCCCCCCCC-hhhHHHHHHHHHH
Q 029700 109 LPQV--KCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQDEA-PHLVNPLVESFVT 171 (189)
Q Consensus 109 l~~i--~~P~lii~g~~D~~~~~~~~~~~~~~--~~~~~~~~l~~~gH~~~~e~-p~~~~~~i~~fl~ 171 (189)
+..+ ++|+|+|+|++|.+++++..+.+.+. .++.+++++++++|.++.|. ++++.+.|.+||.
T Consensus 264 ~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 264 IDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred HhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 4445 79999999999999999888877554 36789999999999999885 7899999999985
No 59
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=66.41 Aligned_cols=66 Identities=30% Similarity=0.542 Sum_probs=54.6
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCC-ccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...+..+++|+++++|++|.+.+......+.+..++ .++++++++||+++.++|+.+++.+.+|+.
T Consensus 214 ~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 214 RAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred chhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 445778889999999999966665555666666775 899999999999999999999999988554
No 60
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.71 E-value=1e-08 Score=70.10 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=50.4
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhh------hhhcccC--CCccEEEcCCCCCCCCCCC-hhhHHHHHHHHHHh
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELG------RAYGNFD--SVEDFIVLPNVGHCPQDEA-PHLVNPLVESFVTR 172 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~------~~~~~~~--~~~~~~~l~~~gH~~~~e~-p~~~~~~i~~fl~~ 172 (189)
..+..+++|+|+++|++|...+ ... ...++.+ +++++++++++||++..|. ++++.+.|.+||++
T Consensus 201 ~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 201 AGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 3466779999999999998753 332 3344433 8899999999999995554 59999999999963
No 61
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.48 E-value=1.8e-07 Score=66.22 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=52.9
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCC--ccEEEcCCCCCCCCCCC---hhhHHHHHHHHHHh
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEA---PHLVNPLVESFVTR 172 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~l~~~gH~~~~e~---p~~~~~~i~~fl~~ 172 (189)
.+.+++||+++++|++|.+++++..+.+.+.+++ .++++++ +||+..+.. ++++...|.+||.+
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 4778999999999999999999988888877664 4566676 799987654 48899999999975
No 62
>PRK10566 esterase; Provisional
Probab=98.47 E-value=5.5e-07 Score=60.72 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=48.7
Q ss_pred cCCCC-CCCeEEEecCCCCCCCchhhhhhcccCC------CccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 108 LLPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDS------VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 108 ~l~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~------~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.++ ++|+|+|+|++|.+++.+..+.+.+.++ +.++++++++||.+. + ...+.+.+||++.
T Consensus 180 ~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 180 QLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred hhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 45566 7999999999999999998888776543 356778899999864 4 4568888999864
No 63
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=1.1e-06 Score=57.54 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCC-CccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..++||+.++.|++|..++.+....+++... +.++++++| ||+...++.+++.+.|.+.+..
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLAH 235 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecC-cceehhhhHHHHHHHHHHHhhh
Confidence 6789999999999999999988887777644 789999995 9999999999999999999864
No 64
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.41 E-value=2.6e-07 Score=60.82 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=49.2
Q ss_pred CCCCeEEEecCCCCCCCchhhhhhc----ccCCCccEEEcCCCCCCCC-CCChhhHHHHHHHHHHhcc
Q 029700 112 VKCPVLIAWGDKDPWEPIELGRAYG----NFDSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~~~~~~~----~~~~~~~~~~l~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 174 (189)
+++|+|+++|++|..+|+..+..+. +.-..++++++|++||.+. .+....+.+.+.+|+++..
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 8899999999999999987666543 3334589999999999655 3555678899999998764
No 65
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.40 E-value=7.1e-07 Score=58.82 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=55.4
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCc-cEEEcCCCCCCCCCCChhhHHHHHHHHHHhccC
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
+.+..|+||+|+++|+.|.+++...+..+-+..++. +-.++.|+||.-..- ..++.+.+..|+.....
T Consensus 186 ~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~~~-~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 186 EKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDIEL-YPEYIEHLRRFISSVLP 254 (258)
T ss_pred CcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCccccc-CHHHHHHHHHHHHHhcc
Confidence 446678899999999999999999999988876654 778899999987644 45677999999987653
No 66
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.26 E-value=3.5e-06 Score=54.32 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=50.3
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.|++|+|-|.|+.|.+++....+.+.+.++++.+..-+ +||+++-.. .+.+.|.+||+..
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP~~~--~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVPNKA--KYKEKIADFIQSF 220 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCCCch--HHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999666666 699999665 4556666666543
No 67
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.20 E-value=4.7e-06 Score=53.66 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=55.9
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCC--ccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccCC
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 176 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 176 (189)
.+.+.++|.|+|.|..|.++||.+.+.+-...|. -++..+|++.|.-.+-. +-..++|.+||.+....
T Consensus 216 ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~-dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 216 KIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWIC-DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred hhccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEEe-ccHHHHHHHHHHHhccC
Confidence 3557789999999999999999999988877553 47899999999877655 56679999999987643
No 68
>PRK11071 esterase YqiA; Provisional
Probab=98.19 E-value=3.9e-06 Score=54.23 Aligned_cols=55 Identities=11% Similarity=-0.104 Sum_probs=47.1
Q ss_pred CCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 112 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
..+|+++|+|++|.+++.+.+..+.+ +++.++++|++|.. ...+++.+.|.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~---~~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYA---ACRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHH---hcceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 67888999999999999999988877 45777889999988 455889999999974
No 69
>PRK13604 luxD acyl transferase; Provisional
Probab=98.16 E-value=2.4e-06 Score=58.62 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=48.8
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC--CccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+.+.++++|+|+|+|+.|.+++.+.++.+.+.++ +.++++++|++|.+. |++- .++.|.++.
T Consensus 196 ~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~-~~~~----~~~~~~~~~ 259 (307)
T PRK13604 196 NKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG-ENLV----VLRNFYQSV 259 (307)
T ss_pred HHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccC-cchH----HHHHHHHHH
Confidence 4466788999999999999999999988777654 789999999999776 4443 345666554
No 70
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.16 E-value=7e-06 Score=62.52 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=53.4
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhc----ccCCCccEEEcCCCCCCCCC-CChhhHHHHHHHHHHhcc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYG----NFDSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~----~~~~~~~~~~l~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 174 (189)
..++++|+|||||+.|.-++.+.+..+. +..-.++++++|+.||.+.- ++-..+...+.+|+.++.
T Consensus 547 ~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~ 617 (620)
T COG1506 547 ADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHL 617 (620)
T ss_pred hcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHh
Confidence 5688999999999999999987766544 33456899999999999886 556778888888888764
No 71
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.15 E-value=3.6e-06 Score=54.08 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=49.2
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
+||||-++|..|.++|.+.+..+++.+|+-++++++|+.|.....+- +.+.....|..
T Consensus 199 ~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~~q~-~l~~lgl~f~k 256 (269)
T KOG4667|consen 199 QCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTGHQS-QLVSLGLEFIK 256 (269)
T ss_pred cCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccchhh-hHhhhcceeEE
Confidence 59999999999999999999999999999999999999998775553 44455555554
No 72
>PRK11460 putative hydrolase; Provisional
Probab=98.14 E-value=2.5e-06 Score=56.99 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCCCCeEEEecCCCCCCCchhhhhhcccC----CCccEEEcCCCCCCCCCCChhhHHHHHHHHH
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGRAYGNFD----SVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~----~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
..++|+++++|++|.++|.+.++.+.+.+ .++++++++++||.+..+.-+.+.+.|.++|
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999998877655443 3567888999999987544444444444444
No 73
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.12 E-value=6.6e-06 Score=56.40 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=55.4
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcc-cCCCccEEEcCCCCCCCCCC----Chh-hHHHHHHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGHCPQDE----APH-LVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~-~~~~~~~~~l~~~gH~~~~e----~p~-~~~~~i~~fl~~~ 173 (189)
...+.+|.+|+|||++.+|++++++....... ..|++.+..-+.+||.-.+. +|. ...+.|.+||+..
T Consensus 267 ~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 267 LPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cccccccccceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 45688999999999999999999988777665 67889998888899988776 454 5567788888654
No 74
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.08 E-value=2e-06 Score=52.94 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=38.9
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC-CccEEEcCCCCCC
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHC 153 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~l~~~gH~ 153 (189)
...+.+.++|+++++|++|.+++.+..+.+.+.++ +.++++++|++|+
T Consensus 97 ~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 SEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp CHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred hhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 45567889999999999999999888888766555 6899999999996
No 75
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.05 E-value=5.6e-06 Score=54.75 Aligned_cols=65 Identities=28% Similarity=0.360 Sum_probs=41.1
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhh----hcccCCCccEEEcCCCCCCCCCCChh--------hHHHHHHHHHHh
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQDEAPH--------LVNPLVESFVTR 172 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~----~~~~~~~~~~~~l~~~gH~~~~e~p~--------~~~~~i~~fl~~ 172 (189)
...++++|+++++|+.|+.++.+..+. +++.-...++++++|++|........ +-.+.+.+||++
T Consensus 140 ~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~ 216 (218)
T PF01738_consen 140 DAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKR 216 (218)
T ss_dssp HGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC
T ss_pred hhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999876444 33445678999999999988754432 334556666654
No 76
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.96 E-value=2.6e-05 Score=51.58 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=40.2
Q ss_pred CCCeEEEecCCCCCCCchhhhh----hcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~----~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
++|+++++|+.|.++|.+.++. +++...+.+++.++|.||-+. .+....+.+||.++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhhh
Confidence 6899999999999999876655 444445688999999999774 45557788898764
No 77
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.89 E-value=0.00043 Score=51.58 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=37.9
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC-CccEEEcCCCCCCCC
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQ 155 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~l~~~gH~~~ 155 (189)
-.|.+|+||++++.|+.|.++|++....+.+.+. +.+++.. .+||.--
T Consensus 435 idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs~~~fvl~-~gGHIgg 483 (560)
T TIGR01839 435 IDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGGKRRFVLS-NSGHIQS 483 (560)
T ss_pred echhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCCCeEEEec-CCCcccc
Confidence 3578999999999999999999999988888765 3444444 4688643
No 78
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.85 E-value=5.6e-05 Score=47.88 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=50.8
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
.+....+|.++|+|+.|.+++....-.+++. ...++++++++.||.+-. -+.+.+.|.+||.
T Consensus 144 ~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~gK-l~~l~~~i~~~l~ 205 (210)
T COG2945 144 FLAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFHGK-LIELRDTIADFLE 205 (210)
T ss_pred hccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceeccc-HHHHHHHHHHHhh
Confidence 3556678999999999999888777667666 457889999999999854 5688899999995
No 79
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.74 E-value=2.6e-05 Score=51.40 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEecCCCCCCCch-hhh----hhccc-CC-CccEEEcCCCCCCCC
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIE-LGR----AYGNF-DS-VEDFIVLPNVGHCPQ 155 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~-~~~----~~~~~-~~-~~~~~~l~~~gH~~~ 155 (189)
+.++++|+|+|.|++|.+.|.. .++ ++++. .+ ..+++.++++||++.
T Consensus 111 vE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~ 164 (213)
T PF08840_consen 111 VEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIE 164 (213)
T ss_dssp GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---
T ss_pred HHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceec
Confidence 6789999999999999987653 332 34443 33 468888999999864
No 80
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.72 E-value=6e-05 Score=55.42 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCeEEEecCCCCCCCchhhhh----hc--------------------------ccCC-----CccEEEcCCCCCCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRA----YG--------------------------NFDS-----VEDFIVLPNVGHCPQDE 157 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~----~~--------------------------~~~~-----~~~~~~l~~~gH~~~~e 157 (189)
.++|||..|+.|.+++....+. +. +... +.+++.+.+|||+++.+
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d 443 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMD 443 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhh
Confidence 4899999999998887532211 10 1112 56677888999999999
Q ss_pred ChhhHHHHHHHHHHh
Q 029700 158 APHLVNPLVESFVTR 172 (189)
Q Consensus 158 ~p~~~~~~i~~fl~~ 172 (189)
+|+.+.++|..|+..
T Consensus 444 ~P~~~~~~i~~fl~~ 458 (462)
T PTZ00472 444 QPAVALTMINRFLRN 458 (462)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999965
No 81
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.64 E-value=1.8e-05 Score=52.10 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCC-ccEEEcCCCCCCCCCCCh
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~l~~~gH~~~~e~p 159 (189)
-.+|++|||-|+|.+|.+++++..+.+.+...+ .+++..+ +||.++....
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~~~ 207 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRKKE 207 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----HH
T ss_pred cccCCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCChh
Confidence 456899999999999999998888888887666 7777777 5999987654
No 82
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.54 E-value=7.9e-05 Score=53.47 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=52.5
Q ss_pred ccCCCCC-CCeEEEecCCCCCCCchhhhhhccc---CCC--ccEEEcCCCCCCCCC---CChhhHHHHHHHHHHh
Q 029700 107 ELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNF---DSV--EDFIVLPNVGHCPQD---EAPHLVNPLVESFVTR 172 (189)
Q Consensus 107 ~~l~~i~-~P~lii~g~~D~~~~~~~~~~~~~~---~~~--~~~~~l~~~gH~~~~---e~p~~~~~~i~~fl~~ 172 (189)
-.+++|+ ||+|.|.|+.|.++++.....+.+. ++. .+.+..+++||+-.+ .-.+++...|.+||.+
T Consensus 331 Vdl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 331 VDPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred ecHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 3478899 9999999999999999998888775 342 346667789998654 3457888999999975
No 83
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.53 E-value=0.00012 Score=46.42 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCCh
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p 159 (189)
.+.+|+++|.+++|+++|.+.++.+++.+ ++++++++++||+.-.+-=
T Consensus 112 ~l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~G~ 159 (171)
T PF06821_consen 112 PLPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAASGF 159 (171)
T ss_dssp HHHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGGTH
T ss_pred ccCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCcccccCC
Confidence 34688999999999999999999999887 7999999999999775443
No 84
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.52 E-value=0.00023 Score=49.88 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=45.4
Q ss_pred CccccCCCCCCCeEEEecCCCCCCCchhhhhhcccCC-CccEEEcCCCCCCCCCCChhhH-HHHHHHHHHhc
Q 029700 104 LPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQDEAPHLV-NPLVESFVTRH 173 (189)
Q Consensus 104 ~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~l~~~gH~~~~e~p~~~-~~~i~~fl~~~ 173 (189)
|.....++|+||+++-.|-.|.++|+...-.+...++ .-++.+++..|| |.+..+ .+...+||.++
T Consensus 253 D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~H----e~~~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 253 DAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYGH----EYGPEFQEDKQLNFLKEH 320 (320)
T ss_dssp -HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--S----STTHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcCC----CchhhHHHHHHHHHHhcC
Confidence 3344567899999999999999999998888777765 458889999999 666666 78888888763
No 85
>PLN02442 S-formylglutathione hydrolase
Probab=97.33 E-value=0.00064 Score=46.95 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEecCCCCCCCch-----hhhhhcccCCCccEEEcCCCCCCCC
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIE-----LGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
+...++|+++++|++|.+++.. ..+.+++.-.++++++++|++|..+
T Consensus 213 ~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 213 FNDVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred ccccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 3456899999999999988752 3344555544588999999999755
No 86
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.29 E-value=0.0007 Score=46.66 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=50.7
Q ss_pred cccCCCCC-CCeEEEecCCCCCCCchhhhhhcccCCC--ccEEEcCCCCCCCCCCChh---hHHHHHHHHHHhc
Q 029700 106 EELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEAPH---LVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~l~~~gH~~~~e~p~---~~~~~i~~fl~~~ 173 (189)
...+.++. +|+|+++|..|..+|......+.+...+ .+..++++++|......+. +....+.+|+.+.
T Consensus 224 ~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 224 FDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred hhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 33455565 8999999999999998888776655443 5677788899988864444 6778888888764
No 87
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.28 E-value=0.0005 Score=44.78 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=46.9
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhccc---CCC--ccEEEcCCCCCCCC-----CCChh------hHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF---DSV--EDFIVLPNVGHCPQ-----DEAPH------LVNPLVESF 169 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~---~~~--~~~~~l~~~gH~~~-----~e~p~------~~~~~i~~f 169 (189)
......+++|+|++.|+.|.++|+.....+.+. .|. .++++++|.||..+ .+.|| +....+..|
T Consensus 157 ~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~W 236 (242)
T KOG3043|consen 157 SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISW 236 (242)
T ss_pred hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHH
Confidence 345678899999999999999998776655543 232 46999999999766 34554 333445555
Q ss_pred HHh
Q 029700 170 VTR 172 (189)
Q Consensus 170 l~~ 172 (189)
+..
T Consensus 237 f~~ 239 (242)
T KOG3043|consen 237 FKH 239 (242)
T ss_pred HHH
Confidence 543
No 88
>COG0400 Predicted esterase [General function prediction only]
Probab=97.23 E-value=0.00041 Score=45.31 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=41.0
Q ss_pred CCCeEEEecCCCCCCCchhhhhhccc----CCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..|+++++|+.|+++|...+..+.+. ..+++...++ .||-+.. +-.+.+.+|+.+
T Consensus 146 ~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~----e~~~~~~~wl~~ 204 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPP----EELEAARSWLAN 204 (207)
T ss_pred CCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH----HHHHHHHHHHHh
Confidence 58999999999999998877665543 4567788888 7996653 444566667765
No 89
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.22 E-value=0.0002 Score=52.13 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=41.9
Q ss_pred CCCeEEEecCCCCCCCchhhhhhc--------------------------ccCCCccEEEcCCCCCCCCCCChhhHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYG--------------------------NFDSVEDFIVLPNVGHCPQDEAPHLVNPLV 166 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i 166 (189)
.++|||..|+.|.+++.-..+.+. +...+.+++.+.+|||+++.++|+...++|
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHH
Confidence 389999999999999854332211 112355788899999999999999999999
Q ss_pred HHHHH
Q 029700 167 ESFVT 171 (189)
Q Consensus 167 ~~fl~ 171 (189)
..||.
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99985
No 90
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.20 E-value=0.0019 Score=45.95 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=51.8
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCc-cEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
..++++|.+||.|..|.++.++....+-..+|+- .+..+|++||..-. ..+.+.|..|+....
T Consensus 258 ~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 258 RDRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNRIQ 321 (367)
T ss_pred HHhcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHHHH
Confidence 4677999999999999999999888877777765 46678999998876 666788888887653
No 91
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.15 E-value=0.0006 Score=46.05 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
+-.+.+|-|+|.+..|.+-..-. +-+.-...++.+++.+||++|.+.|..++..+..|+.++.
T Consensus 266 Fl~~p~~klLilAg~d~LDkdLt---iGQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~ 328 (343)
T KOG2564|consen 266 FLGLPVPKLLILAGVDRLDKDLT---IGQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNR 328 (343)
T ss_pred hhCCCccceeEEecccccCccee---eeeeccceeeeeecccCceeccCCcchHHHHHHHHHhhhc
Confidence 44567888888877775422111 2222245789999999999999999999999999998875
No 92
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=97.13 E-value=0.0013 Score=46.17 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCCeEEEecCCCCCCCchhhhhhc------------------------ccCCC-ccEEEcCCCCCCCCCCChhhHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYG------------------------NFDSV-EDFIVLPNVGHCPQDEAPHLVNPLVE 167 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~------------------------~~~~~-~~~~~l~~~gH~~~~e~p~~~~~~i~ 167 (189)
.+++||..|+.|.+++.-..+.+. +...+ .+++++.+|||+++ .+|+...++|.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 479999999999888753322211 11122 67778889999997 59999999999
Q ss_pred HHHHh
Q 029700 168 SFVTR 172 (189)
Q Consensus 168 ~fl~~ 172 (189)
.|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 99965
No 93
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.11 E-value=0.0007 Score=47.33 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCC-CCCCChhhHHHHHHHHHH
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-PQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~-~~~e~p~~~~~~i~~fl~ 171 (189)
--+.++.+++|.++|......+++..|++++..++| ||. ..+-+.+.|.+.|.+-++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 347888999999999988889999999999999986 997 446778999999988664
No 94
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.04 E-value=0.00023 Score=48.81 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=14.4
Q ss_pred CCccccCCCCCCCeEEEecCCCCCCCchhh-----hhhcccCC----CccEEEcCCCCCCCCCCChh----hHHHHHHHH
Q 029700 103 PLPEELLPQVKCPVLIAWGDKDPWEPIELG-----RAYGNFDS----VEDFIVLPNVGHCPQDEAPH----LVNPLVESF 169 (189)
Q Consensus 103 ~~~~~~l~~i~~P~lii~g~~D~~~~~~~~-----~~~~~~~~----~~~~~~l~~~gH~~~~e~p~----~~~~~i~~f 169 (189)
......+.++.+|+|++.+.+|..+|...- +++++..+ ...-.+||||+|.+--+..+ .+.+.|..|
T Consensus 222 e~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~f 301 (303)
T PF08538_consen 222 ERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKF 301 (303)
T ss_dssp -HHHHTGGG--S-EEEEEE--TT---------------------------------------------------------
T ss_pred HHHHHHhccCCCceEEEecCCCceeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344567889999999999999999887432 22222222 12345899999998854432 577777787
Q ss_pred HH
Q 029700 170 VT 171 (189)
Q Consensus 170 l~ 171 (189)
|+
T Consensus 302 l~ 303 (303)
T PF08538_consen 302 LK 303 (303)
T ss_dssp --
T ss_pred CC
Confidence 73
No 95
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.01 E-value=0.0007 Score=45.56 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCCCCeEEEecCCCCCCCchhhhhhcc----cCCCccEEEcCCCCCCCCC-CChhhHHHHHHHHH
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGRAYGN----FDSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFV 170 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~l~~~gH~~~~-e~p~~~~~~i~~fl 170 (189)
...+|-|.|+++.|.+++.+..+...+ .--+++...+++++|.-|+ ++|++..+.|.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 456999999999999999876665433 2234677788999999885 78999999999985
No 96
>PLN02209 serine carboxypeptidase
Probab=96.95 E-value=0.0026 Score=46.60 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCCeEEEecCCCCCCCchhhhhhc------------------------ccCCC-ccEEEcCCCCCCCCCCChhhHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYG------------------------NFDSV-EDFIVLPNVGHCPQDEAPHLVNPLVE 167 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~------------------------~~~~~-~~~~~l~~~gH~~~~e~p~~~~~~i~ 167 (189)
.+++||..|+.|.+|+....+.+. +...+ .+++.+.+|||+++ .+|+...+++.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 479999999999988764332211 11233 67788889999997 59999999999
Q ss_pred HHHHh
Q 029700 168 SFVTR 172 (189)
Q Consensus 168 ~fl~~ 172 (189)
.|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 99964
No 97
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=96.88 E-value=0.0012 Score=47.14 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=41.9
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCC
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEA 158 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~ 158 (189)
.-.|..|+||++++.|+.|.+.|.+.....++.+++-...++-++||....-+
T Consensus 323 ~VdL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN 375 (445)
T COG3243 323 MVDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVN 375 (445)
T ss_pred EechhhcccceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeC
Confidence 34578999999999999999999999888888888733344556899866433
No 98
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.84 E-value=0.0045 Score=46.37 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=50.9
Q ss_pred ccccCCCCCCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCCCCCCCCCCC---------hhhHHHHHHHHHHh
Q 029700 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDEA---------PHLVNPLVESFVTR 172 (189)
Q Consensus 105 ~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~~gH~~~~e~---------p~~~~~~i~~fl~~ 172 (189)
..+.+-.++.|+|+|.|.+|..+++...+.+++.+ ...+++++.+++|-+-.-. -++|...|.++|.+
T Consensus 296 rDE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~e 373 (784)
T KOG3253|consen 296 RDEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKE 373 (784)
T ss_pred cchhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHH
Confidence 35567788999999999999999999988887763 4578999999999876433 34455555544443
No 99
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=96.81 E-value=0.01 Score=42.83 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
++.++|+|.+.|++|.++|.+..+.++..-.+.+...++... +++-. +.-...+.+||..
T Consensus 349 rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~--~~~gy-~~al~~~~~Wl~~ 408 (411)
T PF06500_consen 349 RRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKP--LHMGY-PQALDEIYKWLED 408 (411)
T ss_dssp S-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSS--HHHHH-HHHHHHHHHHHHH
T ss_pred CCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCc--cccch-HHHHHHHHHHHHH
Confidence 678999999999999999999999998887778888887543 22222 3555777788865
No 100
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.73 E-value=0.0035 Score=45.90 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCeEEEecCCCCCCCchhhhhh----------------c--c-------cCCCccEEEcCCCCCCCCCCChhhHHHHHHH
Q 029700 114 CPVLIAWGDKDPWEPIELGRAY----------------G--N-------FDSVEDFIVLPNVGHCPQDEAPHLVNPLVES 168 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~----------------~--~-------~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~ 168 (189)
.+++|..|+.|.++|....+.+ . . ...+..+..+.||||+++.++|+....++..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999999886544331 1 0 1122455778899999999999999999999
Q ss_pred HHHhc
Q 029700 169 FVTRH 173 (189)
Q Consensus 169 fl~~~ 173 (189)
||...
T Consensus 444 fl~g~ 448 (454)
T KOG1282|consen 444 FLNGQ 448 (454)
T ss_pred HHcCC
Confidence 99864
No 101
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.70 E-value=0.0058 Score=44.83 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCeEEEecCCCCCCCchhhhhhc------------------------ccCC-CccEEEcCCCCCCCCCCChhhHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYG------------------------NFDS-VEDFIVLPNVGHCPQDEAPHLVNPLVE 167 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~------------------------~~~~-~~~~~~l~~~gH~~~~e~p~~~~~~i~ 167 (189)
.++|||..|+.|.+++.-..+.+. +... +.+++++-+|||+++ .+|+...+++.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 479999999999988754332211 1122 267788889999997 59999999999
Q ss_pred HHHHh
Q 029700 168 SFVTR 172 (189)
Q Consensus 168 ~fl~~ 172 (189)
.|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 99965
No 102
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.63 E-value=0.011 Score=39.71 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=47.6
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhccc----CCCccEEEcCCCCCCCCCCC-----------hhhHHHHHHHHHHhc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQDEA-----------PHLVNPLVESFVTRH 173 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~l~~~gH~~~~e~-----------p~~~~~~i~~fl~~~ 173 (189)
..++++|+|++.|+.|..++....+.+.+. ..+.++.++++++|.++-+. .+.-.+.+.+|+.+.
T Consensus 154 ~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 154 APKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred cccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999988766665544 23578899999889887442 133445666777654
No 103
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=96.51 E-value=0.0065 Score=43.63 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=48.5
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhh-hcccCCCccEEEcCCCCCCCCCCC----hhhHHHH-HHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRA-YGNFDSVEDFIVLPNVGHCPQDEA----PHLVNPL-VESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~-~~~~~~~~~~~~l~~~gH~~~~e~----p~~~~~~-i~~fl~~~ 173 (189)
...+.+|++|+|+|.+.+|+++|+..... ..+..|+.-+++-.-+||.-.+|. +....+. +.+|+...
T Consensus 315 ~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 315 SNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred hhhcccccccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 55688999999999999999999864432 333457777777777899998887 2333333 66776543
No 104
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.49 E-value=0.0059 Score=39.14 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCC-CCeEEEecCCCCCCCchhhhhhcc---cCCCc--cEEEcCCCCCCCCCCCh---hhHHHHHHHHHHh
Q 029700 110 PQVK-CPVLIAWGDKDPWEPIELGRAYGN---FDSVE--DFIVLPNVGHCPQDEAP---HLVNPLVESFVTR 172 (189)
Q Consensus 110 ~~i~-~P~lii~g~~D~~~~~~~~~~~~~---~~~~~--~~~~l~~~gH~~~~e~p---~~~~~~i~~fl~~ 172 (189)
+.|+ ++.|-|-|+.|.++.+......+. .+|.. ..++.+||||+-.+.=+ +++...|.+|+.+
T Consensus 130 ~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 130 AAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred HHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 3443 677779999999998765544333 34433 45677899999665543 6788889999875
No 105
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.41 E-value=0.0073 Score=47.57 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=45.6
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhh----hcccCCCccEEEcCCCCCCCC-CCChhhHHHHHHHHHHhcc
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~----~~~~~~~~~~~~l~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 174 (189)
..+.+|++|+|+|+|..|..+++..... +.+.-...++.+.+ .||... ...+..+.+.+.+|+....
T Consensus 449 ~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 449 KDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHKL 520 (767)
T ss_pred hHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhcc
Confidence 4467899999999999999988654433 33322234554444 689644 3456777888889987653
No 106
>PRK10162 acetyl esterase; Provisional
Probab=96.35 E-value=0.0085 Score=42.23 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCeEEEecCCCCCCCc--hhhhhhcccCCCccEEEcCCCCCCCCC-----CChhhHHHHHHHHHHhc
Q 029700 114 CPVLIAWGDKDPWEPI--ELGRAYGNFDSVEDFIVLPNVGHCPQD-----EAPHLVNPLVESFVTRH 173 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~--~~~~~~~~~~~~~~~~~l~~~gH~~~~-----e~p~~~~~~i~~fl~~~ 173 (189)
.|++|++|+.|.+.+. ...+.+.+.--.+++++++|..|.... +...+..+.+.+||.+.
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 6999999999998653 233445454446899999999996542 23456667777888764
No 107
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=96.29 E-value=0.019 Score=36.29 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC---CCChhhHHHHHHHHHHhc
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ---DEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~---~e~p~~~~~~i~~fl~~~ 173 (189)
.++.-|.+++..++|++++.+.++.+++.. ++.++.+..+||+-- +..-.+....+.+|+.+.
T Consensus 114 ~~lpfps~vvaSrnDp~~~~~~a~~~a~~w-gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~~ 179 (181)
T COG3545 114 EPLPFPSVVVASRNDPYVSYEHAEDLANAW-GSALVDVGEGGHINAESGFGPWPEGYALLAQLLSRA 179 (181)
T ss_pred ccCCCceeEEEecCCCCCCHHHHHHHHHhc-cHhheecccccccchhhcCCCcHHHHHHHHHHhhhh
Confidence 345689999999999999999999999886 577888888999755 344455667777777653
No 108
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.013 Score=39.62 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=50.2
Q ss_pred eEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCC-CCCCChhhHHHHHHHHHHhcc
Q 029700 116 VLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-PQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 116 ~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~-~~~e~p~~~~~~i~~fl~~~~ 174 (189)
+.++.+++|..++......+++..|++++..++ +||. ..+-+-+.|...|.+-|++..
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhh
Confidence 567779999999998888899999999999999 6997 457778999999999998764
No 109
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=95.93 E-value=0.019 Score=35.73 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=35.9
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
.+-|..+++||||.+|+.|.+-..+....+. ..+..++++++++.|-+-
T Consensus 135 t~HL~gl~tPtli~qGtrD~fGtr~~Va~y~-ls~~iev~wl~~adHDLk 183 (213)
T COG3571 135 TEHLTGLKTPTLITQGTRDEFGTRDEVAGYA-LSDPIEVVWLEDADHDLK 183 (213)
T ss_pred hhhccCCCCCeEEeecccccccCHHHHHhhh-cCCceEEEEeccCccccc
Confidence 3457789999999999999876554432222 245689999999999754
No 110
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.76 E-value=0.011 Score=39.02 Aligned_cols=65 Identities=20% Similarity=0.401 Sum_probs=51.1
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEE--cCC----CCCCCCCCCh-hhHHHHHHHHH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV--LPN----VGHCPQDEAP-HLVNPLVESFV 170 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~--l~~----~gH~~~~e~p-~~~~~~i~~fl 170 (189)
.+..+.+++|+..+...+|+.+|+...+.+....+++.+.. ++. .||+-..-+| |..-+.+.+|+
T Consensus 209 ~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 209 RQVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 44567889999999999999999999999998877775543 433 4999888777 76666666654
No 111
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=95.56 E-value=0.15 Score=35.09 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=40.5
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCC---------------------------CccEEEcCCCCCCCCCCChh
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS---------------------------VEDFIVLPNVGHCPQDEAPH 160 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~---------------------------~~~~~~l~~~gH~~~~e~p~ 160 (189)
.+.+-++|+++++|.+|.++..+....++..+. ....+.+.+.||+.+-.+++
T Consensus 207 ~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A~ 286 (297)
T PF06342_consen 207 KLNKKPIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRAD 286 (297)
T ss_pred HhccCCCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHHH
Confidence 355667999999999999876554433322111 11233455568888877777
Q ss_pred hHHHHHHHHH
Q 029700 161 LVNPLVESFV 170 (189)
Q Consensus 161 ~~~~~i~~fl 170 (189)
-+++.+...+
T Consensus 287 lIA~~i~~mf 296 (297)
T PF06342_consen 287 LIAEAIKKMF 296 (297)
T ss_pred HHHHHHHHhh
Confidence 7777776654
No 112
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.52 E-value=0.036 Score=38.56 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCCeEEEecCCCCCCCchhhhhhccc----C-CCccEEEcCCCCCCCCC--CChhhHHHHHHHHHHhccC
Q 029700 112 VKCPVLIAWGDKDPWEPIELGRAYGNF----D-SVEDFIVLPNVGHCPQD--EAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~~~~~~~~~----~-~~~~~~~l~~~gH~~~~--e~p~~~~~~i~~fl~~~~~ 175 (189)
-++|++|.+|..|.++|....+.+.+. - .+++++.+++.+|.... ..|+ ...||...-.
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~-----a~~Wl~~rf~ 283 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPD-----ALAWLDDRFA 283 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHH-----HHHHHHHHHC
Confidence 369999999999999998877665443 3 45677888889997542 3333 3367765543
No 113
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=95.22 E-value=0.097 Score=39.04 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=36.8
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhh-hcccCCC-------cc---EEEcCCCCCCCCCCChhh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRA-YGNFDSV-------ED---FIVLPNVGHCPQDEAPHL 161 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~-~~~~~~~-------~~---~~~l~~~gH~~~~e~p~~ 161 (189)
.-.|++|+||+.++.|..|.+.|++.+-. +...+++ .+ +.+-+..||.-.+-....
T Consensus 290 ~~DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIFVS~~V 356 (581)
T PF11339_consen 290 RVDLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIFVSGKV 356 (581)
T ss_pred EeehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEEeccHh
Confidence 45689999999999999999999876522 2222221 22 223477899865544333
No 114
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.20 E-value=0.038 Score=38.08 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=32.9
Q ss_pred CCCCeEEEecCCCCCCCch-----hhhhhcccCCCccEEEcCCCCCCCCC
Q 029700 112 VKCPVLIAWGDKDPWEPIE-----LGRAYGNFDSVEDFIVLPNVGHCPQD 156 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~l~~~gH~~~~ 156 (189)
...|+++++|+.|..++.. ..+.+++.--.+++.+++|++|....
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYF 259 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchh
Confidence 4679999999999988862 33344444345788899999997653
No 115
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=95.11 E-value=0.073 Score=38.71 Aligned_cols=67 Identities=18% Similarity=0.038 Sum_probs=52.3
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEE---cCCCCCCCC---CCChhhHHHHHHHHHHhcc
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV---LPNVGHCPQ---DEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~---l~~~gH~~~---~e~p~~~~~~i~~fl~~~~ 174 (189)
.+..+++||.+.+|++|.+..++..+.+....+++.+.. +++=.|+=. .+.++.+.+.|.+.+....
T Consensus 327 ~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 327 DLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred CccccccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 467889999999999999999988887665556554433 677788633 5779999999999998654
No 116
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=95.09 E-value=0.078 Score=34.33 Aligned_cols=53 Identities=13% Similarity=-0.069 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
..+++++.++.|.+++.+.+ .+ ...++..++.+|++|-+. .=++....|.+|+
T Consensus 134 ~~~~lvll~~~DEvLd~~~a--~~-~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 134 PERYLVLLQTGDEVLDYREA--VA-KYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFL 186 (187)
T ss_pred CccEEEEEecCCcccCHHHH--HH-HhcCceEEEEeCCCCCCc--cHHHHHHHHHHhh
Confidence 57899999999999887433 22 234566667788888665 3556677888886
No 117
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=94.89 E-value=0.072 Score=34.33 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=38.8
Q ss_pred cccCCCCC-CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 106 EELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 106 ~~~l~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
...+.+++ .|++.|+|+++.- .....+.. ++++++.+|| ||++--+ .+.+++.|.+-|.
T Consensus 131 ~pei~~l~~~~v~CiyG~~E~d---~~cp~l~~--~~~~~i~lpG-gHHfd~d-y~~La~~Il~~l~ 190 (192)
T PF06057_consen 131 IPEIAKLPPAPVQCIYGEDEDD---SLCPSLRQ--PGVEVIALPG-GHHFDGD-YDALAKRILDALK 190 (192)
T ss_pred hHHHHhCCCCeEEEEEcCCCCC---CcCccccC--CCcEEEEcCC-CcCCCCC-HHHHHHHHHHHHh
Confidence 44556665 5999999997653 11223332 6889999995 8877755 5566666666554
No 118
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=94.80 E-value=0.011 Score=38.87 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCeEEEecCCCCCCCc--hhhhhhcccCCCccEEEcCCCCCCCC
Q 029700 114 CPVLIAWGDKDPWEPI--ELGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~--~~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
.|+++++|+.|.+++. ...+.+++.--++++++++|.+|...
T Consensus 167 Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 4899999999987643 23444555555689999999999754
No 119
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=94.63 E-value=0.055 Score=36.29 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=34.3
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhccc--CCCccEEEcCCCCCCCCCCChh
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQDEAPH 160 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~--~~~~~~~~l~~~gH~~~~e~p~ 160 (189)
..++.+.+|++.+.+.+|.++.......+... -+..++..++|++|-+. |+|-
T Consensus 189 ~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~-enl~ 243 (294)
T PF02273_consen 189 NDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG-ENLV 243 (294)
T ss_dssp HHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT-SSHH
T ss_pred HHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhh-hChH
Confidence 34678899999999999999988777766654 34678888999999876 5553
No 120
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=94.45 E-value=0.87 Score=31.41 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCC--ccEEEc-CCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVL-PNVGHC 153 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~l-~~~gH~ 153 (189)
..++.+++|.+|.+++.+..+.+.+..|+ .++.+- +|.-|.
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~~~~v~~~~i~Ha 264 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGHEPDVVVDEEGIPHA 264 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 67899999999999999999999888773 343322 455554
No 121
>PRK10115 protease 2; Provisional
Probab=94.44 E-value=0.18 Score=39.67 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCCCCC-eEEEecCCCCCCCchhhhhhc----ccCCCccEEEc---CCCCCCCCCCChhhHH--HHHHHHHHhc
Q 029700 109 LPQVKCP-VLIAWGDKDPWEPIELGRAYG----NFDSVEDFIVL---PNVGHCPQDEAPHLVN--PLVESFVTRH 173 (189)
Q Consensus 109 l~~i~~P-~lii~g~~D~~~~~~~~~~~~----~~~~~~~~~~l---~~~gH~~~~e~p~~~~--~~i~~fl~~~ 173 (189)
+.+++.| +||++|.+|.-+++..+..+. +.-...+++++ +++||.---.+-+.+. .....||-..
T Consensus 601 v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 601 VTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred cCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 5567899 556799999998887665543 33344677788 8999984433333222 2334555443
No 122
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=94.38 E-value=0.064 Score=38.04 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCCCC-eEEEecCCCCCCCc--hhhhhhcccCCCccEEEcCCCCCCCCCCCh-----hhHHHHHHHHHHhc
Q 029700 111 QVKCP-VLIAWGDKDPWEPI--ELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-----HLVNPLVESFVTRH 173 (189)
Q Consensus 111 ~i~~P-~lii~g~~D~~~~~--~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p-----~~~~~~i~~fl~~~ 173 (189)
...+| +||+.++.|.+... ..++.+++..-.+++.++++++|..+.-.| .++.+.|.+|+.+.
T Consensus 265 ~~~lp~tlv~~ag~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 265 GLGLPPTLVVVAGYDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred ccCCCceEEEEeCchhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 34455 99999999987644 345566666555667789999998775444 46677788887653
No 123
>PLN00021 chlorophyllase
Probab=94.29 E-value=0.2 Score=35.39 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCCCeEEEecCCCC-----C----CCchh--hhhhcccCCCccEEEcCCCCCCCCCCCh
Q 029700 111 QVKCPVLIAWGDKDP-----W----EPIEL--GRAYGNFDSVEDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 111 ~i~~P~lii~g~~D~-----~----~~~~~--~~~~~~~~~~~~~~~l~~~gH~~~~e~p 159 (189)
.+.+|+|+|.+..|. . .|... .+.+.+.-+...+.+++++||+-++|..
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 467999999998653 2 22322 2334444566778889999999886554
No 124
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.041 Score=36.91 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEE-cCCCCCCCCCCChhhHHHHHHHHH
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV-LPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~-l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
+++-.+-+.+.+|..|.++|.+..+.+++.+|..++.. -+++-|.+...+.+..+..+.+.+
T Consensus 238 ~een~d~l~Fyygt~DgW~p~~~~d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 238 CEENLDSLWFYYGTNDGWVPSHYYDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred HHhcCcEEEEEccCCCCCcchHHHHHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 44445778899999999999999999999998766643 377999999999999998888765
No 125
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.15 E-value=0.13 Score=36.70 Aligned_cols=62 Identities=21% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCCCeEEEecCCCCCCCchhhhhhcccCCCcc-EEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~-~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
.+.+||-+-.+..|..--+ -..++...|+.. ....+++||+..+|.|+.+++.+..|++...
T Consensus 402 ~v~vPtg~a~f~~el~~~~--~~~lrdky~nL~~~s~~~~GGhFaalE~p~~La~D~~~FV~~~~ 464 (469)
T KOG2565|consen 402 QVRVPTGCARFKFELWHTS--DDVLRDKYPNLTHSSYHPKGGHFAALEDPKKLAQDFFSFVEKLN 464 (469)
T ss_pred ccccchhhhccccchhhCc--HHHHhhhcccceeeEeccCCcchhhhhCcHHHHHHHHHHHHHHH
Confidence 5678888888887765322 223555567653 4456789999999999999999999998653
No 126
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.032 Score=36.31 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=40.5
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCCh
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p 159 (189)
.+..+++|+||+.|++|.-.-.+..+.++....++++..+++.+|+-.+|+-
T Consensus 202 ~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I~~~~ 253 (270)
T KOG4627|consen 202 EYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDIIEET 253 (270)
T ss_pred HhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhHHHHh
Confidence 4567889999999999865444555566666678999999999999776654
No 127
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=93.20 E-value=0.17 Score=33.64 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=41.3
Q ss_pred CCCeEEEecCCCCCCCch---hhhhhcccCC-CccEEEcCCCCCCCCCC-ChhhHHHHHHHHH
Q 029700 113 KCPVLIAWGDKDPWEPIE---LGRAYGNFDS-VEDFIVLPNVGHCPQDE-APHLVNPLVESFV 170 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~---~~~~~~~~~~-~~~~~~l~~~gH~~~~e-~p~~~~~~i~~fl 170 (189)
.+|.++.....|...... ....+.+..+ ..+++.++ ++|+-++. +.+++++.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GDHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CCCcEecchHHHHHHHHHhccC
Confidence 577899988888876555 2333555544 45788888 49998886 7788888888875
No 128
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.55 E-value=0.46 Score=32.63 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=46.6
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCc-cEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
..+++++|+|+..|-.|.+|+|...-.+.+.++.. ++.+++.-+| .+-|.-.++.+..|+...
T Consensus 254 ~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~aH---e~~p~~~~~~~~~~l~~l 317 (321)
T COG3458 254 LAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYFAH---EGGPGFQSRQQVHFLKIL 317 (321)
T ss_pred HHHhhccceEEeecccCCCCCChhhHHHhhcccCCceEEEeecccc---ccCcchhHHHHHHHHHhh
Confidence 35689999999999999999998887777776654 4556676555 455666666677777653
No 129
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=92.19 E-value=0.16 Score=36.19 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=43.8
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchh-hhhhcccCCCc--cEEEcCCCCCCCCCCChhhH
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIEL-GRAYGNFDSVE--DFIVLPNVGHCPQDEAPHLV 162 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~-~~~~~~~~~~~--~~~~l~~~gH~~~~e~p~~~ 162 (189)
...+.+++.|++++.|..|.+.|... .......+++. -+..++++.|+-.+|-.++.
T Consensus 244 ~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 244 TTGLVKVTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred cccceeeecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 44577899999999999998766543 33455567777 57788999999998887774
No 130
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=92.08 E-value=0.46 Score=33.47 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=34.0
Q ss_pred CCCeEEEecCCCCCCCc--hhhhhhcccCCCccEEEcCCCCCCCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPI--ELGRAYGNFDSVEDFIVLPNVGHCPQDEA 158 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~--~~~~~~~~~~~~~~~~~l~~~gH~~~~e~ 158 (189)
-.|++|+.|+.|.+.+. ...+.+++.--.++++.+++..|....-.
T Consensus 245 lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~~~~~~g~~H~f~~~~ 292 (312)
T COG0657 245 LPPTLIQTAEFDPLRDEGEAYAERLRAAGVPVELRVYPGMIHGFDLLT 292 (312)
T ss_pred CCCEEEEecCCCcchhHHHHHHHHHHHcCCeEEEEEeCCcceeccccC
Confidence 47899999999998872 34455665555678899999999664333
No 131
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=91.58 E-value=0.38 Score=35.83 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.8
Q ss_pred cEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 143 DFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 143 ~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.+++ +|||++.++|+...+.+..|+...
T Consensus 462 ~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~~ 491 (498)
T COG2939 462 FLRIYE-AGHMVPYDRPESSLEMVNLWINGY 491 (498)
T ss_pred EEEEec-CcceeecCChHHHHHHHHHHHhhc
Confidence 344555 899999999999999999998753
No 132
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=90.85 E-value=0.28 Score=32.02 Aligned_cols=56 Identities=23% Similarity=0.509 Sum_probs=41.5
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcc----cCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGN----FDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..|++..+|+.|.++|...++..++ .....+++.++|.+|... |+++ +.+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~---~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS---PQEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc---HHHH-HHHHHHHHH
Confidence 5789999999999999887765443 333478889999888654 5555 556667655
No 133
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=90.71 E-value=0.57 Score=33.64 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=50.0
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCcc-EEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~-~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
..++..|-.|+.|..|.++.++.+..+...+|+.+ +..+|+..|... +..+.+.|..|+.+..
T Consensus 325 ~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~flnrfq 388 (507)
T COG4287 325 QLRLALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLNRFQ 388 (507)
T ss_pred hhhccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999888889875 557799888654 5556677777776543
No 134
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.85 Score=36.47 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCCCCCe-EEEecCCCCCCCchhhhhh----ccc-CCCccEEEcCCCCCCCCCCCh-hhHHHHHHHHHHhcc
Q 029700 109 LPQVKCPV-LIAWGDKDPWEPIELGRAY----GNF-DSVEDFIVLPNVGHCPQDEAP-HLVNPLVESFVTRHA 174 (189)
Q Consensus 109 l~~i~~P~-lii~g~~D~~~~~~~~~~~----~~~-~~~~~~~~l~~~gH~~~~e~p-~~~~~~i~~fl~~~~ 174 (189)
+..++.|. |+|+|+.|.-+..+....+ ... ++ .++.++|+..|.+-.-.. ..+...+..|+....
T Consensus 677 ~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~-~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 677 ANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVP-FRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred hhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCc-eEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 45566676 9999999998876655443 333 45 899999999999886443 667788888888543
No 135
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=87.06 E-value=0.87 Score=30.20 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=28.4
Q ss_pred eEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC
Q 029700 116 VLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 116 ~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
..++.|++|.++|++..+..-+.. +.+..++ ++|++.
T Consensus 168 d~aiIg~~D~IFpp~nQ~~~W~~~--~~~~~~~-~~Hy~F 204 (213)
T PF04301_consen 168 DKAIIGKKDRIFPPENQKRAWQGR--CTIVEID-APHYPF 204 (213)
T ss_pred cEEEEcCCCEEeCHHHHHHHHhCc--CcEEEec-CCCcCc
Confidence 458899999999999887765432 4566775 799976
No 136
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=86.92 E-value=0.82 Score=29.61 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCCCCCeEEEecCCCCCC-Cchhhhhhccc-CCCccEEEcCCCCCCCC-CCChhhHHHHHHHH
Q 029700 110 PQVKCPVLIAWGDKDPWE-PIELGRAYGNF-DSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESF 169 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~-~~~~~~~~~~~-~~~~~~~~l~~~gH~~~-~e~p~~~~~~i~~f 169 (189)
..+.+|+.++.|+.|... +......+.+. ....+++.++ ++|+.+ .+++..+.+.|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-g~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDEDPDGWRAHWPLPHTVVDVP-GDHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceeEEcc-CchHHHHHHhHHHHHHHHHhh
Confidence 357899999999988653 22222334443 3457788888 588776 45666666666554
No 137
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=86.65 E-value=3.1 Score=31.49 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=45.8
Q ss_pred CCCCCeEEEecCCCCCCCchhhh----hhcccCC--------CccEEEcCCCCCCCCCC--ChhhHHHHHHHHHHhcc
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGR----AYGNFDS--------VEDFIVLPNVGHCPQDE--APHLVNPLVESFVTRHA 174 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~----~~~~~~~--------~~~~~~l~~~gH~~~~e--~p~~~~~~i~~fl~~~~ 174 (189)
+---..++.||..|.++++.... ++.+..+ -.++..+||.||+.--. .+-.....|.+|+++..
T Consensus 351 ~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~ 428 (474)
T PF07519_consen 351 ARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGK 428 (474)
T ss_pred hcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 33467999999999999885433 3333332 24788899999997643 45567789999998754
No 138
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=85.68 E-value=0.86 Score=31.20 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCCeEEEecC------CCCCCCchhhhhhcccC----CCccEEEcCC--CCCCCCCCChhhHHHHHHHHHH
Q 029700 113 KCPVLIAWGD------KDPWEPIELGRAYGNFD----SVEDFIVLPN--VGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 113 ~~P~lii~g~------~D~~~~~~~~~~~~~~~----~~~~~~~l~~--~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
++.+|-|.|. .|..+|...+..+...+ ...+-.++.| +.|.-..|++ +|.+.|.+||=
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FLw 253 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFLW 253 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHHC
T ss_pred CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHhc
Confidence 5789999998 68889988877665554 3445666654 6798777876 66699999983
No 139
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=84.26 E-value=1.1 Score=30.95 Aligned_cols=45 Identities=29% Similarity=0.268 Sum_probs=27.4
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcccCCCc----cEEEcCCCCCC
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE----DFIVLPNVGHC 153 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~----~~~~l~~~gH~ 153 (189)
.+.++++|+|++.|-.|..+.....+.+.+..... ++++=| .+|.
T Consensus 223 ~~~~i~vP~l~v~Gw~D~~~~~~~~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 223 RLDKIDVPVLIVGGWYDTLFLRGALRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp HHGG--SEEEEEEETTCSSTSHHHHHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred HHhhCCCCEEEecccCCcccchHHHHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 35899999999999999555555555444432222 555545 5774
No 140
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=83.92 E-value=0.77 Score=30.29 Aligned_cols=27 Identities=11% Similarity=-0.104 Sum_probs=21.0
Q ss_pred CCCCeEEEecCCCCCCCchhhhhhccc
Q 029700 112 VKCPVLIAWGDKDPWEPIELGRAYGNF 138 (189)
Q Consensus 112 i~~P~lii~g~~D~~~~~~~~~~~~~~ 138 (189)
...|++|++|++|.+++++.++.+.+.
T Consensus 167 ~~p~~~i~hG~~D~vVp~~~~~~~~~~ 193 (212)
T TIGR01840 167 PTPIMSVVHGDADYTVLPGNADEIRDA 193 (212)
T ss_pred CCCeEEEEEcCCCceeCcchHHHHHHH
Confidence 344578999999999999887776554
No 141
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=80.28 E-value=8.9 Score=28.42 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCC-----hhhHHHHHHHHHH
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEA-----PHLVNPLVESFVT 171 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~-----p~~~~~~i~~fl~ 171 (189)
-.+|+|+|++|++..... .+.+--.++.+.+.||+.|...+.. -++....|.+|..
T Consensus 352 ~rmlFVYG~nDPW~A~~f--~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSAEPF--RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCcccCcc--ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 568999999999854322 2222234677888999999876532 3445566666653
No 142
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=79.86 E-value=3 Score=35.69 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=34.2
Q ss_pred CCCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCCh
Q 029700 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p 159 (189)
...+.+|++++.|..|..........+.+...+.+++.++ +||+.++..+
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~~~~~ 1281 (1296)
T PRK10252 1232 SVPFDGKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDIISPE 1281 (1296)
T ss_pred CCcccCceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHHCCcH
Confidence 3567899999999888654444334444444667788886 6999887544
No 143
>PRK04940 hypothetical protein; Provisional
Probab=78.15 E-value=11 Score=24.51 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=35.1
Q ss_pred CeEEEecCCCCCCCchhhhhhcccCCCc-cEEEcCCCCCCCCCCChhhHHHHHHHHHH
Q 029700 115 PVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 115 P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~l~~~gH~~~~e~p~~~~~~i~~fl~ 171 (189)
..+++..+.|.+++.+.+.. .+.++ ++.+.+|+.|-+ +.=++....|.+|+.
T Consensus 126 r~~vllq~gDEvLDyr~a~~---~y~~~y~~~v~~GGdH~f--~~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTAE---ELHPYYEIVWDEEQTHKF--KNISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHHH---HhccCceEEEECCCCCCC--CCHHHHHHHHHHHHh
Confidence 35899999999887654433 23444 688888766643 334557788889985
No 144
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=74.47 E-value=10 Score=26.41 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCC-CCCC-CCCCChhhHHHHHHHHHH
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHC-PQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~-~gH~-~~~e~p~~~~~~i~~fl~ 171 (189)
....+|+.++.|++ ...+..++.+|+++.+.+.. .|++ ...-.|++..+.|.+=.+
T Consensus 144 g~~gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa~ 201 (270)
T cd08769 144 GEFGVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAVK 201 (270)
T ss_pred hhcCCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHHH
Confidence 35679999999974 33445566679998888865 4644 335567777776666553
No 145
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=72.78 E-value=6.6 Score=27.66 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCeEEEecCCCCCCCchhhh---hhcccCCCc--cEEEcCCCCCCCCCCC---hhhHHHHHHHHHHhccCC
Q 029700 114 CPVLIAWGDKDPWEPIELGR---AYGNFDSVE--DFIVLPNVGHCPQDEA---PHLVNPLVESFVTRHATP 176 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~---~~~~~~~~~--~~~~l~~~gH~~~~e~---p~~~~~~i~~fl~~~~~~ 176 (189)
|-.+-|-|+.|.+......+ .+-..+|.. +...-+++||+-.+.- -+++...|.+|+.+....
T Consensus 340 ~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d~~ 410 (415)
T COG4553 340 VALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYDRS 410 (415)
T ss_pred eeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhCcc
Confidence 66788899999986654333 344446654 3455689999866543 477889999999987643
No 146
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=69.61 E-value=4 Score=27.38 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=20.1
Q ss_pred CCeEEEecCCCCCCCchhhhhhccc
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNF 138 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~ 138 (189)
.|++|++|+.|..+.+...+.+.+.
T Consensus 170 ~P~~v~hG~~D~tV~~~n~~~~~~q 194 (220)
T PF10503_consen 170 YPRIVFHGTADTTVNPQNADQLVAQ 194 (220)
T ss_pred CCEEEEecCCCCccCcchHHHHHHH
Confidence 6999999999999888777665443
No 147
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=65.99 E-value=22 Score=24.69 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=38.8
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCC-CCCCCCCCChhhHHHHHHHHHHh
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~-~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
....+|++++.|++- ..+..++.+|+.+.+.+.. .|.....-.|++..+.|.+=..+
T Consensus 144 g~~gVPV~lvsGD~~------~~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~~~ 201 (263)
T cd08770 144 AYLGVPVVFVSGDAG------LCAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGVKK 201 (263)
T ss_pred hhcCCCEEEEecCHH------HHHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHHHH
Confidence 356799999999642 2233455679998888764 35444456788888888877643
No 148
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=65.68 E-value=9.7 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.9
Q ss_pred CC-CCCeEEEecCCCCCCCchhhhh----hcc----cCCCccEEEcCCCCCCC
Q 029700 111 QV-KCPVLIAWGDKDPWEPIELGRA----YGN----FDSVEDFIVLPNVGHCP 154 (189)
Q Consensus 111 ~i-~~P~lii~g~~D~~~~~~~~~~----~~~----~~~~~~~~~l~~~gH~~ 154 (189)
++ ..|++|++|..|.++|....-+ +-+ .....++.++.++-|+=
T Consensus 552 ~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHfD 604 (690)
T PF10605_consen 552 NLHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHFD 604 (690)
T ss_pred CcCCCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeech
Confidence 44 5899999999999998754321 111 12345777888888874
No 149
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=65.53 E-value=26 Score=24.43 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=38.3
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCC-CC-CCCCCCChhhHHHHHHHHHH
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VG-HCPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~-~g-H~~~~e~p~~~~~~i~~fl~ 171 (189)
....+|+.++.|++ ...+..++..|+.+.+.++. .| +..-.-.|++..+.|.+=..
T Consensus 144 g~~gVPV~lVsGDd------~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~ 201 (266)
T cd08663 144 GEYGVPVVLVTGDD------AACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAAA 201 (266)
T ss_pred hhcCCCEEEEecCH------HHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHHH
Confidence 35679999999963 22333455689998888764 36 34445678888888877663
No 150
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=63.98 E-value=15 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCC---------CCCch--hhhhhcccCCCccEEEcCCCCCCCCCCCh
Q 029700 112 VKCPVLIAWGDKDP---------WEPIE--LGRAYGNFDSVEDFIVLPNVGHCPQDEAP 159 (189)
Q Consensus 112 i~~P~lii~g~~D~---------~~~~~--~~~~~~~~~~~~~~~~l~~~gH~~~~e~p 159 (189)
..+|++||...-+. +.|.. ..+.+.+.-+.+-..++.+.||+=+++..
T Consensus 153 ~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 153 FSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 35999999866653 22322 23334444444555667889999888766
No 151
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=63.83 E-value=9.2 Score=28.55 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=22.9
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
.-+++..|+.|++........ .-......+|+|++|+.=
T Consensus 377 tnviFtNG~~DPW~~lgv~~~---~~~~~~~~~I~g~~Hc~D 415 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGVTSD---SSDSVPAIVIPGGAHCSD 415 (434)
T ss_dssp -SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGG
T ss_pred CeEEeeCCCCCCcccccCCCC---CCCCcccEEECCCeeecc
Confidence 469999999999866543222 223455678999999854
No 152
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.01 E-value=5.2 Score=25.36 Aligned_cols=35 Identities=26% Similarity=0.108 Sum_probs=26.2
Q ss_pred EEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC
Q 029700 118 IAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ 155 (189)
Q Consensus 118 ii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~ 155 (189)
++.|.+|.++|+.....+.. +.+.+..+. ++|++.
T Consensus 169 a~v~skDkIFpp~nq~ayw~--~rc~v~ei~-g~H~~F 203 (214)
T COG2830 169 AYVGSKDKIFPPANQHAYWN--ARCAVIEIN-GEHYLF 203 (214)
T ss_pred hhccCCCcccCCcchhhhhc--cceeEEEec-CcceEE
Confidence 46689999999988777654 357788887 488754
No 153
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=61.16 E-value=31 Score=24.01 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCC-CCCC-CCCCChhhHHHHHHHHHH
Q 029700 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHC-PQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 110 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~-~gH~-~~~e~p~~~~~~i~~fl~ 171 (189)
....+|++++.|++- ..+..++.+|+++.+.++. .|++ .-.-.|++..+.|.+=..
T Consensus 143 g~~gVPV~lvsGDd~------~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~ 200 (265)
T cd00281 143 GYYGVPVVMVAGDAE------VCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGTE 200 (265)
T ss_pred hhcCCCEEEEecCHH------HHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHHHH
Confidence 356799999999642 2233455679998888865 3654 335567777777776653
No 154
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=59.41 E-value=12 Score=27.81 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccC--CCccE--EEcCCCCCCC---CCCChhhHHHHHHHHHHhcc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDF--IVLPNVGHCP---QDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~--~~l~~~gH~~---~~e~p~~~~~~i~~fl~~~~ 174 (189)
..||+|+.|.-|.+-+ +....+.+.+ -+.-+ +.+||.|+.. .-++.+..-+.|.+||....
T Consensus 189 p~P~VIv~gGlDs~qe-D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p 256 (411)
T PF06500_consen 189 PYPTVIVCGGLDSLQE-DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRP 256 (411)
T ss_dssp -EEEEEEE--TTS-GG-GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHST
T ss_pred CCCEEEEeCCcchhHH-HHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCC
Confidence 5799999999997654 3333333321 23333 3468888754 34556788899999998753
No 155
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.57 E-value=36 Score=24.82 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCCeEEEecCCCCCCCchhhhhhccc----CCCccEEEcCCCCCCCCC-CChhhHHHHHHHHHHhccC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~l~~~gH~~~~-e~p~~~~~~i~~fl~~~~~ 175 (189)
..+.+.+++..|.+++.+..+.+.+. .-+++.+-+.++-|..|. ..|..+.+...+|+.+...
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~ 292 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVIS 292 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccc
Confidence 57788899999999999887776322 334555566778898884 6799999999999988653
No 156
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=55.41 E-value=16 Score=18.88 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=31.2
Q ss_pred CCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 127 EPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+.+...+.+.. .|+. ++.+-++-+++-.|.++++.+.|.+|-++.
T Consensus 14 lN~d~IE~ie~-~PDT-vItL~~G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 14 LNPDLIETIEE-TPDT-VITLTNGKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EChHHEEEEEE-cCCe-EEEEeCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 34445555544 5774 445555567788999999999999998764
No 157
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=54.39 E-value=39 Score=25.22 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred ccCCCCC-CCeEEEecCCCC--CCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 107 ELLPQVK-CPVLIAWGDKDP--WEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 107 ~~l~~i~-~P~lii~g~~D~--~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
..+.+|. ..+..|+|.+|. .|| .+.. .+.+++.+|| ||++- ++-+.+++.|.+=++..
T Consensus 389 ~~~~~l~~~~v~CiYG~~e~d~~Cp-----~l~~--~~~~~v~lpG-gHHFd-~dy~~la~~il~~~~~r 449 (456)
T COG3946 389 PDIAKLPLARVQCIYGQEEKDTACP-----SLKA--KGVDTVKLPG-GHHFD-GDYEKLAKAILQGMRLR 449 (456)
T ss_pred hhhhhCCcceeEEEecCccccccCC-----cchh--hcceeEecCC-CcccC-ccHHHHHHHHHHHHHhc
Confidence 3444554 468899998754 333 2322 3577888995 88765 55677888887776433
No 158
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=51.33 E-value=20 Score=23.39 Aligned_cols=41 Identities=34% Similarity=0.324 Sum_probs=28.1
Q ss_pred CCCeEEEecCCCC-CCCchhhhhhccc-CCCccEEEcCCCCCCC
Q 029700 113 KCPVLIAWGDKDP-WEPIELGRAYGNF-DSVEDFIVLPNVGHCP 154 (189)
Q Consensus 113 ~~P~lii~g~~D~-~~~~~~~~~~~~~-~~~~~~~~l~~~gH~~ 154 (189)
+.-+|+.||-.|. -+..+..+++++. ..+.-++++- +||+.
T Consensus 63 ~tDVLiWWGH~~Hg~V~D~iVeRV~kRV~EGMGLiVLH-SGHfS 105 (261)
T COG4813 63 KTDVLIWWGHKDHGAVEDEIVERVQKRVWEGMGLIVLH-SGHFS 105 (261)
T ss_pred ccceEEEeccccccccchHHHHHHHHHHhcccceEEEe-ccchh
Confidence 3678999998775 3455556666554 5667788886 79973
No 159
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=50.50 E-value=40 Score=23.65 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCCCeEEEecCCC-------CCCCch---hhhhhcccCCCccEEEcCCCCCCCCCCC
Q 029700 111 QVKCPVLIAWGDKD-------PWEPIE---LGRAYGNFDSVEDFIVLPNVGHCPQDEA 158 (189)
Q Consensus 111 ~i~~P~lii~g~~D-------~~~~~~---~~~~~~~~~~~~~~~~l~~~gH~~~~e~ 158 (189)
.+++|++||...-. +-+.+. +.+.+.+--+.+-..+..+-||+=|+++
T Consensus 178 ~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~p~~hfV~~dYGHmDmLDD 235 (307)
T PF07224_consen 178 DLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKPPCAHFVAKDYGHMDMLDD 235 (307)
T ss_pred ccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcccceeeeeccccccccccc
Confidence 35699999986544 222222 3344555444454555667899988654
No 160
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=50.33 E-value=46 Score=22.03 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCCeEEEecCCCCCCCchhhhh---hcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRA---YGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~---~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
-+|+|+|.-.-|..+++..... -.+..|...+..+.--|-.-+++..+.+...+...-+.+
T Consensus 71 ~~~vLvvFqgpdAYISP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~~ 134 (209)
T COG2808 71 GQPVLVVFQGPDAYISPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDEH 134 (209)
T ss_pred CCeEEEEEeCCCcccCcccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHHh
Confidence 4899999988888888877653 445577666666654477788888887777766665543
No 161
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=14 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCCccEEEcCCCCCCCCCCChhhHHHHHHHH
Q 029700 139 DSVEDFIVLPNVGHCPQDEAPHLVNPLVESF 169 (189)
Q Consensus 139 ~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~f 169 (189)
..+..+..++.+||+++-++|+.....+..+
T Consensus 380 yknl~f~wilraghmvp~Dnp~~a~hmlr~v 410 (414)
T KOG1283|consen 380 YKNLSFFWILRAGHMVPADNPAAASHMLRHV 410 (414)
T ss_pred hccceeEEeecccCcccCCCHHHHhhheeec
Confidence 4456777888899999999999887666544
No 162
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=44.84 E-value=56 Score=21.79 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=32.5
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNV 150 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (189)
..|.+.+.|..+...+++..+.+++.+.+.=+++++.+
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 58999999999998888888889988777777788765
No 163
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=42.79 E-value=19 Score=26.49 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=25.1
Q ss_pred cCCCCCCCeEEEecCCCCCCCchhhhhhcc---cCCCccEEEcCCCCCCCCCC
Q 029700 108 LLPQVKCPVLIAWGDKDPWEPIELGRAYGN---FDSVEDFIVLPNVGHCPQDE 157 (189)
Q Consensus 108 ~l~~i~~P~lii~g~~D~~~~~~~~~~~~~---~~~~~~~~~l~~~gH~~~~e 157 (189)
....++.|+|+|..+. +........+.+ ..++..+.++.|++|.-+.+
T Consensus 269 ~~~~i~~P~L~InSe~--f~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~sD 319 (379)
T PF03403_consen 269 IYSKIPQPLLFINSES--FQWWENIFRMKKVISNNKESRMLTIKGTAHLSFSD 319 (379)
T ss_dssp GGGG--S-EEEEEETT--T--HHHHHHHHTT--TTS-EEEEEETT--GGGGSG
T ss_pred cccCCCCCEEEEECcc--cCChhhHHHHHHHhccCCCcEEEEECCCcCCCcch
Confidence 3467899999998775 222333333322 34567888999999976544
No 164
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.58 E-value=97 Score=21.42 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=31.0
Q ss_pred EEEecCCCCCCCchhhhhhccc--CCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 117 LIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 117 lii~g~~D~~~~~~~~~~~~~~--~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
++|.|..|........+.+.+. -++.++.++|.++. .|+...+...+.+++.
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~-----~~~~~~~~~~~~~~~l 55 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRAGGEDAIIVIITSASE-----EPREVGERYITIFSRL 55 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCC-----ChHHHHHHHHHHHHHc
Confidence 5677777765555455555444 24568888987764 4555555555555443
No 165
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=41.92 E-value=32 Score=22.20 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCccEEEcCCCCCCCCCCCh-hhHHHHHHHHHHhc
Q 029700 140 SVEDFIVLPNVGHCPQDEAP-HLVNPLVESFVTRH 173 (189)
Q Consensus 140 ~~~~~~~l~~~gH~~~~e~p-~~~~~~i~~fl~~~ 173 (189)
.+...+++||+.|......+ +.+.+.+.+|.+..
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~ 99 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANG 99 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcC
Confidence 47789999974499998887 77778888887653
No 166
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=41.44 E-value=23 Score=26.75 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred EEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 118 IAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 118 ii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+++|+.|..++.+..+... ......+.++ +.|..++.++ ++.+.|..||...
T Consensus 371 ~~y~dGDGTV~~~S~~~~~--~~~~~~~~l~-~~H~~il~n~-~v~~~I~~fL~~g 422 (440)
T PLN02733 371 YTYVDGDGTVPVESAKADG--LNAVARVGVP-GDHRGILRDE-HVFRILKHWLKVG 422 (440)
T ss_pred EEEeCCCCEEecchhhccC--ccccccccCC-chHHHHhcCH-HHHHHHHHHHhcC
Confidence 4445555555555544322 2233445556 7898888765 6679999999654
No 167
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=37.90 E-value=61 Score=20.69 Aligned_cols=36 Identities=25% Similarity=0.537 Sum_probs=25.0
Q ss_pred hcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 135 YGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 135 ~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
++..-|..++.++ |||-.. +|+.+...|.+|+.++.
T Consensus 105 F~tlePkidlLIv-G~Gd~~---~p~~v~~~V~~F~k~~k 140 (196)
T KOG3363|consen 105 FQTLEPKIDLLIV-GCGDKK---HPDKVRPSVRQFVKSHK 140 (196)
T ss_pred hhhcCCCccEEEE-ecCCcC---CchhcCHHHHHHHHHhC
Confidence 3344466777776 677654 47888888889988763
No 168
>COG4099 Predicted peptidase [General function prediction only]
Probab=36.82 E-value=28 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.4
Q ss_pred CCCeEEEecCCCCCCCchhhhh
Q 029700 113 KCPVLIAWGDKDPWEPIELGRA 134 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~ 134 (189)
+.|.-++++.+|.+.|.+.++-
T Consensus 315 ~~piWvfhs~dDkv~Pv~nSrv 336 (387)
T COG4099 315 KAPIWVFHSSDDKVIPVSNSRV 336 (387)
T ss_pred cCceEEEEecCCCccccCccee
Confidence 4899999999999998876543
No 169
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=36.69 E-value=1.1e+02 Score=21.21 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=30.4
Q ss_pred chhhhhhcccCCCccEEEcCCCCCCCCCCCh-hhHHHHHHH
Q 029700 129 IELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-HLVNPLVES 168 (189)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p-~~~~~~i~~ 168 (189)
....+.+.+.+|+.+++.+-+..|++.=+++ +++.+.+.+
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~ 51 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLE 51 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 4566788888999999999999999997665 445444443
No 170
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=36.01 E-value=60 Score=22.10 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.2
Q ss_pred CCccEEEcCCCCCCCCCC--ChhhHHHHHHHHHHhc
Q 029700 140 SVEDFIVLPNVGHCPQDE--APHLVNPLVESFVTRH 173 (189)
Q Consensus 140 ~~~~~~~l~~~gH~~~~e--~p~~~~~~i~~fl~~~ 173 (189)
.+...+++|| ||..+.+ +-+.+.+++..|.++.
T Consensus 95 ~dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~g 129 (232)
T cd03148 95 SEYAAVFIPG-GHGALIGIPESQDVAAALQWAIKND 129 (232)
T ss_pred hhceEEEECC-CCCChhhcccCHHHHHHHHHHHHcC
Confidence 3567889996 8987744 4456888888888754
No 171
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=35.50 E-value=1.6e+02 Score=20.77 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhh-HH---HHHHHHHHhcc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHL-VN---PLVESFVTRHA 174 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~-~~---~~i~~fl~~~~ 174 (189)
+.|+.++= +.+-.....+.+.+.+|+.+++.+-+..+++.=+.+++ +. -.|.+||.+..
T Consensus 5 ~~~IgvFD---SGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 5 QPPIGVFD---SGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred CCeEEEEE---CCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 45677763 23445678888999999999999999999999777653 32 34555665543
No 172
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=35.49 E-value=39 Score=19.20 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=25.1
Q ss_pred chhhhhhcccCCCccEEEcCCCCCCCCCCChhhHH
Q 029700 129 IELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVN 163 (189)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~ 163 (189)
+..+..+++.+.+....+++-.||.+.+..|+...
T Consensus 8 ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~ 42 (100)
T PF01751_consen 8 PSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYD 42 (100)
T ss_dssp HHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcccccccccccc
Confidence 44566677766655677777789999998877644
No 173
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=34.24 E-value=38 Score=17.42 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=14.6
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 029700 153 CPQDEAPHLVNPLVESFVT 171 (189)
Q Consensus 153 ~~~~e~p~~~~~~i~~fl~ 171 (189)
..++++|+++.+.|...=.
T Consensus 20 Lv~Y~~Pe~Vi~iIN~lR~ 38 (63)
T PF03295_consen 20 LVFYEDPEEVINIINELRN 38 (63)
T ss_pred eeeccCHHHHHHHHHHhhh
Confidence 4678999999988876543
No 174
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=33.75 E-value=34 Score=23.85 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCCCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCC-C-CCCCCCChhhHHHHHHHHHHh
Q 029700 111 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNV-G-HCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 111 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~-g-H~~~~e~p~~~~~~i~~fl~~ 172 (189)
...+|+.++.|++ ...+..++.+|+.+.+.+..+ | +....-.|++..+.|.+=..+
T Consensus 145 ~~GVPV~lVsGD~------~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~~a~~ 202 (265)
T PF04951_consen 145 YYGVPVVLVSGDD------ALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIREAAKE 202 (265)
T ss_dssp HTT--EEEEEEEH------HHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHHHHHH
T ss_pred hcCCcEEEEeCcH------HHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHHHHHH
Confidence 4579999999963 445667788898888877643 3 344566788888887776654
No 175
>PHA00026 cp coat protein
Probab=33.56 E-value=32 Score=19.67 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.7
Q ss_pred cEEEcCCCCCCCCCCChhhHHHHHHHHHHhccCCC
Q 029700 143 DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 177 (189)
Q Consensus 143 ~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 177 (189)
+++.++++|-.-.--.|..++.-+.+|+.....++
T Consensus 6 ~fvlvdnggtgdvtvapsnfangvaewis~nsrsq 40 (129)
T PHA00026 6 QFVLVDNGGTGDVTVAPSNFANGVAEWISNNSRSQ 40 (129)
T ss_pred EEEEEecCCccceEEeccccchhHHHHHhcCcccc
Confidence 45667777776666678899999999998876554
No 176
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=32.88 E-value=65 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=17.8
Q ss_pred CCCCChhhHHHHHHHHHHhccC
Q 029700 154 PQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 154 ~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
++-++|-.+.+.|..||.++.-
T Consensus 111 llr~D~~~VkeeIK~fl~~h~I 132 (180)
T PF04814_consen 111 LLRRDPWRVKEEIKAFLQQHNI 132 (180)
T ss_dssp CTTS-HHHHHHHHHHHHHHCT-
T ss_pred HHhhCHHHHHHHHHHHHHHcCC
Confidence 6678899999999999998753
No 177
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=32.63 E-value=81 Score=16.50 Aligned_cols=47 Identities=6% Similarity=-0.030 Sum_probs=35.6
Q ss_pred CCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 126 WEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
++.+...+.+.. .|+.++..+. +--++--|.-+++.+.|.+|-.+..
T Consensus 13 ~lN~~~IE~ie~-~PDttItLin-GkkyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 13 WLNAHHIETIEA-FPDTTITLIN-GKKYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred eeCHHHhhhhhc-cCCcEEEEEc-CcEEEEcccHHHHHHHHHHHHHHhh
Confidence 455566666655 5998888775 4677888999999999999987653
No 178
>PRK00865 glutamate racemase; Provisional
Probab=32.52 E-value=1.3e+02 Score=20.82 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=35.8
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCCh-hhHHHHH
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-HLVNPLV 166 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p-~~~~~~i 166 (189)
.|+.|+= +.+-.....+.+.+.+|+.+++.+-+..|++.-+++ +++.+.+
T Consensus 6 ~~IgvfD---SGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~ 56 (261)
T PRK00865 6 APIGVFD---SGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERT 56 (261)
T ss_pred CeEEEEE---CCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHH
Confidence 4666663 224445677889999999999999999999997665 4444433
No 179
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=32.06 E-value=26 Score=21.59 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.1
Q ss_pred CcccccceEEeeCch
Q 029700 2 EPEICRGMILLNISL 16 (189)
Q Consensus 2 ~P~~v~~lvl~~~~~ 16 (189)
||+++.++.+++++.
T Consensus 96 yP~rl~~i~iin~p~ 110 (159)
T PF00650_consen 96 YPERLGKIYIINAPW 110 (159)
T ss_dssp STTTEEEEEEES--T
T ss_pred CCccceeEEEEecCh
Confidence 899999999999964
No 180
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=31.97 E-value=1.6e+02 Score=19.75 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=28.8
Q ss_pred CeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 115 PVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 115 P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
++++|.|..+...+....+.+.+.. ++.++.++|-++-- ++...+...+.+++
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~-----~~~~~~~~~~~~~~ 55 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEE-----PAEVGEEYRDVFER 55 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcC-----hhHHHHHHHHHHHH
Confidence 4567777765434444444444433 46778888766543 44444545554444
No 181
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=31.89 E-value=2e+02 Score=22.57 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=27.2
Q ss_pred ccCCCCCCCeEEEecCCCCCCCchhhhhhcccC--CCccEEEcCCCCCC
Q 029700 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHC 153 (189)
Q Consensus 107 ~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~l~~~gH~ 153 (189)
..+.++++|+|++.|=.|. ......+.+.... ...++++=| .+|.
T Consensus 226 ~~~~~i~vP~l~~~gw~D~-~~~g~~~~~~~~~~~~~~~lilGp-w~H~ 272 (550)
T TIGR00976 226 RDLGGSDVPTLVTGGWYDN-HSRGSIRLFLAVHRGGAQRLVVGP-WTHS 272 (550)
T ss_pred hHhcCCCCCEEEeCcccCC-CCchHHHHHHHHhhcCCceEEEcc-CCCC
Confidence 3567899999999999995 4444444433321 124454334 4675
No 182
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=31.86 E-value=41 Score=21.48 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=31.2
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCC----CccEEEcC-----CCCCC--CCCC---ChhhHHHHHHHHHHhcc
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDS----VEDFIVLP-----NVGHC--PQDE---APHLVNPLVESFVTRHA 174 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~l~-----~~gH~--~~~e---~p~~~~~~i~~fl~~~~ 174 (189)
+.+||+++..|.-. .+.++.++..++ .+++.-+. +-+|+ +.+- +-..+.+.+.+|+.++.
T Consensus 1 Mk~LIlYstr~GqT-~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~ 74 (175)
T COG4635 1 MKTLILYSTRDGQT-RKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHA 74 (175)
T ss_pred CceEEEEecCCCcH-HHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhhhhHHHHHHHHHHHH
Confidence 35899999988643 345555554443 22222111 11111 0011 12456788888988764
No 183
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=31.11 E-value=43 Score=21.70 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccC-CCccEEEcCCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHC 153 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~l~~~gH~ 153 (189)
+.|++.|.|+.+............+.- .+..++++.+.|+.
T Consensus 59 ~~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg 100 (181)
T TIGR03846 59 DRTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAYG 100 (181)
T ss_pred CCcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccc
Confidence 567888888777654444333334332 35667777766544
No 184
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=29.67 E-value=54 Score=21.40 Aligned_cols=40 Identities=23% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCCchhhhhhccc-CCCccEEEcCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVGH 152 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~-~~~~~~~~l~~~gH 152 (189)
+.|+++|.|+.+..+.........+. .++..++++.+.|+
T Consensus 66 ~~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~y 106 (188)
T cd03371 66 DRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH 106 (188)
T ss_pred CCcEEEEeCCcHHHhhccHHHHHHHcCCCCcEEEEEeCchh
Confidence 46788888887765444333333333 34566777766554
No 185
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=28.48 E-value=24 Score=17.97 Aligned_cols=28 Identities=4% Similarity=-0.124 Sum_probs=18.1
Q ss_pred CccEEEcCCCCCCCCCCChhhHHHHHHHHH
Q 029700 141 VEDFIVLPNVGHCPQDEAPHLVNPLVESFV 170 (189)
Q Consensus 141 ~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl 170 (189)
+.++. -.+|||.+++.++ .|...+...+
T Consensus 29 Dikik-C~gCg~~imlpR~-~feK~~Kkvi 56 (57)
T PF06107_consen 29 DIKIK-CLGCGRQIMLPRS-KFEKRLKKVI 56 (57)
T ss_pred cEEEE-ECCCCCEEEEeHH-HHHHHHHHhc
Confidence 44444 4579999998875 4555555543
No 186
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=27.92 E-value=98 Score=22.19 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=40.2
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchh-h-hhhccc--CCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIEL-G-RAYGNF--DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~-~-~~~~~~--~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
.+.+.++++|||=|++.......... . +...+. .++.+-..+.+..|...- .-+.+.+.|..||.++
T Consensus 239 ~~~la~l~iPvLDi~~~~~~~~~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~-~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 239 AEQLAQLKIPVLDIYSADNPASQQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSG-WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHhhccCCCEEEEecCCChHHHHHHHHHHHHHHhccCCCceeEecCCCCCChhh-HHHHHHHHHHHHHHhh
Confidence 34567899999999987733221111 1 112222 356666777766554432 2233889999999875
No 187
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=27.54 E-value=56 Score=21.42 Aligned_cols=39 Identities=15% Similarity=-0.070 Sum_probs=16.9
Q ss_pred CCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCC
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGH 152 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH 152 (189)
.|++.|.|+.+..+.........+.--+..++++.+.|+
T Consensus 72 r~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~y 110 (196)
T cd02013 72 RPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQW 110 (196)
T ss_pred CcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEECchh
Confidence 456666665554443333222222212244444454444
No 188
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.54 E-value=66 Score=20.59 Aligned_cols=33 Identities=3% Similarity=-0.138 Sum_probs=20.3
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVL 147 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l 147 (189)
..++.++.|+.+.. .+..+.+.+..|+.+++-.
T Consensus 46 ~~~v~llG~~~~~~--~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 46 GLRVFLLGAKPEVL--EKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCeEEEECCCHHHH--HHHHHHHHHHCCCcEEEEe
Confidence 46677776554422 3445567777888887653
No 189
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=27.51 E-value=44 Score=16.08 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=9.9
Q ss_pred ccEEEcCCCCCCCC
Q 029700 142 EDFIVLPNVGHCPQ 155 (189)
Q Consensus 142 ~~~~~l~~~gH~~~ 155 (189)
++.=+|||-||+-+
T Consensus 30 aEsPv~PGn~hlQP 43 (45)
T PF08384_consen 30 AESPVFPGNGHLQP 43 (45)
T ss_pred CCCCccCCCcccCC
Confidence 45557888888754
No 190
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.34 E-value=1.4e+02 Score=19.11 Aligned_cols=34 Identities=3% Similarity=-0.108 Sum_probs=20.9
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLP 148 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~ 148 (189)
..++.++.|+.+. -.+..+.+.+..|+.+++-..
T Consensus 48 ~~~ifllG~~~~~--~~~~~~~l~~~yP~l~ivg~~ 81 (172)
T PF03808_consen 48 GKRIFLLGGSEEV--LEKAAANLRRRYPGLRIVGYH 81 (172)
T ss_pred CCeEEEEeCCHHH--HHHHHHHHHHHCCCeEEEEec
Confidence 3566666665432 245666777888888876443
No 191
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=27.04 E-value=99 Score=20.00 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=8.3
Q ss_pred CCeEEEecCCCCCCC
Q 029700 114 CPVLIAWGDKDPWEP 128 (189)
Q Consensus 114 ~P~lii~g~~D~~~~ 128 (189)
.+++++.|+.+....
T Consensus 69 ~~vv~i~GDG~f~~~ 83 (183)
T cd02005 69 RRVILLVGDGSFQMT 83 (183)
T ss_pred CeEEEEECCchhhcc
Confidence 456666666555443
No 192
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=26.75 E-value=1.4e+02 Score=17.38 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=38.4
Q ss_pred eEEEecCCCCCCCch-------hhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhccCCC
Q 029700 116 VLIAWGDKDPWEPIE-------LGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 177 (189)
Q Consensus 116 ~lii~g~~D~~~~~~-------~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 177 (189)
+-|.|.+++...-.. ....+.+.+|...+-.+|+.-|.......++=...|..++++.-..+
T Consensus 17 i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~~~~R~~~L~~Yl~~Ll~~~ 85 (101)
T cd06896 17 VQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDSDHKRVRDLNHYLEQLLSGS 85 (101)
T ss_pred EEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccHHHHHHHHHHHHHHHHHccC
Confidence 345565555443222 23346667898888888887776666655555677888887765433
No 193
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=26.17 E-value=69 Score=22.62 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=16.1
Q ss_pred CCCeEEEecCCCCCCCch----hhhhhcccCCCccEEEcC
Q 029700 113 KCPVLIAWGDKDPWEPIE----LGRAYGNFDSVEDFIVLP 148 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~----~~~~~~~~~~~~~~~~l~ 148 (189)
..|+.|.||-.|..+.+. ..+.+.+.+|+.-++.+.
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ 44 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIE 44 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEE
Confidence 579999999999876443 223355567887777665
No 194
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=26.05 E-value=81 Score=16.11 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCCCCChhhHHHHHHHHHHhccC
Q 029700 153 CPQDEAPHLVNPLVESFVTRHAT 175 (189)
Q Consensus 153 ~~~~e~p~~~~~~i~~fl~~~~~ 175 (189)
.+.+++-..+..+|..||-+...
T Consensus 21 hP~WDQ~Rl~~aALa~FL~QnG~ 43 (57)
T PF10929_consen 21 HPNWDQYRLFQAALAGFLLQNGC 43 (57)
T ss_pred CCCchHHHHHHHHHHHHHHHcCc
Confidence 46777878888888888877653
No 195
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=25.90 E-value=69 Score=21.09 Aligned_cols=41 Identities=17% Similarity=-0.100 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC 153 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~ 153 (189)
+.|++.|.|+..-.+.........+.--...++++.+.|+.
T Consensus 75 ~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg 115 (202)
T cd02006 75 DRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLG 115 (202)
T ss_pred CCeEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeCchHH
Confidence 45788888888876665544444443234777778777664
No 196
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=25.84 E-value=1.9e+02 Score=18.58 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=31.8
Q ss_pred eEEEecCCCCC-CCchhhhhhcccCC-----CccEEEcCCCCCCCCCCChhhHHHHHH
Q 029700 116 VLIAWGDKDPW-EPIELGRAYGNFDS-----VEDFIVLPNVGHCPQDEAPHLVNPLVE 167 (189)
Q Consensus 116 ~lii~g~~D~~-~~~~~~~~~~~~~~-----~~~~~~l~~~gH~~~~e~p~~~~~~i~ 167 (189)
|+.++-..|.. +-..+.+.+++..| +..+..+. |+....|+++.+.|.
T Consensus 3 Tl~LyNtYD~~k~heaH~RaIARAaPicyAf~f~LAL~d----FP~~~~~~e~~~~v~ 56 (173)
T PF04407_consen 3 TLGLYNTYDKKKLHEAHLRAIARAAPICYAFGFHLALVD----FPFDKEPKELAEEVA 56 (173)
T ss_pred EEEEeeccCcccccHHHHHHHHhhhhhhhhcCCceEEEC----CCCCCChHHHHHHHH
Confidence 67888888864 34456666777655 44555554 666667887777665
No 197
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=25.50 E-value=1.1e+02 Score=20.89 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCccEEEcCCCCCCCC--CCChhhHHHHHHHHHHhc
Q 029700 140 SVEDFIVLPNVGHCPQ--DEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 140 ~~~~~~~l~~~gH~~~--~e~p~~~~~~i~~fl~~~ 173 (189)
.+...+++|| ||..+ +.+-+.+.++|..|.++.
T Consensus 93 ~dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~g 127 (231)
T cd03147 93 DDYGIFFVAG-GHGTLFDFPHATNLQKIAQQIYANG 127 (231)
T ss_pred hhCcEEEECC-CCchhhhcccCHHHHHHHHHHHHcC
Confidence 3567889996 78764 444456788888888754
No 198
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=25.38 E-value=1.9e+02 Score=18.44 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=33.3
Q ss_pred CeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 115 PVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 115 P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
-++++..--|.-.+......+.+.+.+-++.+|--+|..+--++.+.+.+.+..++.+
T Consensus 41 D~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 41 DLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred CEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 3455544445444444444444445666777776667766666666676666666654
No 199
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=60 Score=23.71 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHhc
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~ 173 (189)
+.|+....+..|...+...+-=+....++-++.++| |+|..|-.. |..||.+.
T Consensus 214 ~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~C-------IDpWL~~~ 266 (348)
T KOG4628|consen 214 KLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNC-------IDPWLTQT 266 (348)
T ss_pred hCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhcc-------chhhHhhc
Confidence 467777776666543322222245556788899999 999988543 45666554
No 200
>COG3411 Ferredoxin [Energy production and conversion]
Probab=24.46 E-value=1.2e+02 Score=15.92 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred ccEEEcCCCCCCCCCCChhhHHHHHHHHHHhcc
Q 029700 142 EDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 174 (189)
Q Consensus 142 ~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~~~ 174 (189)
-.+.++|+ |||--.-.|+..-+++.+.|.+..
T Consensus 18 Pvl~vYpe-gvWY~~V~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 18 PVLVVYPE-GVWYTRVDPEDARRIVQSHLLGGR 49 (64)
T ss_pred CEEEEecC-CeeEeccCHHHHHHHHHHHHhCCC
Confidence 35667775 788888888888888888887543
No 201
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=24.17 E-value=71 Score=13.15 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHhc
Q 029700 160 HLVNPLVESFVTRH 173 (189)
Q Consensus 160 ~~~~~~i~~fl~~~ 173 (189)
+.++..|.++|.+.
T Consensus 1 ~~Ln~lI~~YL~~~ 14 (27)
T PF08513_consen 1 EELNQLIYDYLVEN 14 (27)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHC
Confidence 46788999999865
No 202
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=23.56 E-value=39 Score=23.57 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=14.9
Q ss_pred CCcccccceEEeeCchhh
Q 029700 1 MEPEICRGMILLNISLRM 18 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~ 18 (189)
++|++|.++|++||+.+.
T Consensus 132 ~~~~~v~~iv~LDPa~p~ 149 (275)
T cd00707 132 RLNGKLGRITGLDPAGPL 149 (275)
T ss_pred HhcCccceeEEecCCccc
Confidence 368899999999998654
No 203
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=23.53 E-value=73 Score=20.39 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=17.9
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVG 151 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~g 151 (189)
..|++.|.|+..-.+.........+.--+..++++.+.|
T Consensus 68 ~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~ 106 (175)
T cd02009 68 DKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNG 106 (175)
T ss_pred CCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCC
Confidence 455666666655444333222233332235555555544
No 204
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=23.45 E-value=94 Score=20.05 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=25.2
Q ss_pred CCeEEEecCCCCCCCchhhhhhccc-CCCccEEEcCCCCCCC
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVGHCP 154 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~-~~~~~~~~l~~~gH~~ 154 (189)
.|++.+.|+.+............+. .++..++++.+.|+..
T Consensus 60 ~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~ 101 (179)
T cd03372 60 RKVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGS 101 (179)
T ss_pred CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccc
Confidence 5788888887765444333333333 3467777777766543
No 205
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=23.33 E-value=1.2e+02 Score=20.10 Aligned_cols=40 Identities=13% Similarity=-0.089 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGH 152 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH 152 (189)
+.|++.|.|+.+..+.........+.--+..++++.+.|.
T Consensus 66 ~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 105 (205)
T cd02003 66 DREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGF 105 (205)
T ss_pred CCeEEEEEccchhhccHHHHHHHHHcCCCCEEEEEECCcc
Confidence 4678888888876655444443444323467777777654
No 206
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=23.08 E-value=3e+02 Score=20.25 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=43.0
Q ss_pred cccCCCCCCCeEEEecCCCCCCCchhhhhhccc---CCCccEEEcCCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF---DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 106 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~---~~~~~~~~l~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
...+.+++.|+++|.-++ +-..+....+++. ..+-.+.++.|+=|--+-+-|=.+-..|..++.-
T Consensus 280 ~~~~~~arqP~~finv~~--fQ~~en~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~ 347 (399)
T KOG3847|consen 280 QLQYSQARQPTLFINVED--FQWNENLLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKV 347 (399)
T ss_pred hhhhhhccCCeEEEEccc--ccchhHHHHHHhhhCCCccceEEEEccceecccccCccccHHHHHHHhcc
Confidence 344678899999999543 2233444445544 3345778889988988877776666666666653
No 207
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.59 E-value=2.3e+02 Score=18.48 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCCC-CCchhhhhhcccCCCccEEEcCCCCC-------CCCCCChhhHHHHHHHHHHh
Q 029700 113 KCPVLIAWGDKDPW-EPIELGRAYGNFDSVEDFIVLPNVGH-------CPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 113 ~~P~lii~g~~D~~-~~~~~~~~~~~~~~~~~~~~l~~~gH-------~~~~e~p~~~~~~i~~fl~~ 172 (189)
+.|++++-..+... ..+...+.+.+.-...-.++=|..|. .--+..++++.+.|..++..
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 78999998876543 33334444443311122223344455 45567788888888777753
No 208
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=22.54 E-value=76 Score=19.95 Aligned_cols=40 Identities=20% Similarity=0.079 Sum_probs=20.2
Q ss_pred CCeEEEecCCCCCCCchhhhhhccc-CCCccEEEcCCCCCC
Q 029700 114 CPVLIAWGDKDPWEPIELGRAYGNF-DSVEDFIVLPNVGHC 153 (189)
Q Consensus 114 ~P~lii~g~~D~~~~~~~~~~~~~~-~~~~~~~~l~~~gH~ 153 (189)
.|+.+|.|+....+.........+. -.+..++++.+.++.
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~g 100 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYG 100 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHhcCCCEEEEEEeCcccc
Confidence 5677777776654443333333332 124555666665543
No 209
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=22.00 E-value=1.5e+02 Score=18.83 Aligned_cols=41 Identities=15% Similarity=-0.109 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC 153 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~ 153 (189)
+.|++.+.|+.......+......+.--+..++++.+.|+.
T Consensus 66 ~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~ 106 (172)
T cd02004 66 DKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWY 106 (172)
T ss_pred CCeEEEEEcchhhcCCHHHHHHHHHcCCCEEEEEEECcccc
Confidence 46788888887765544333333333224556666665543
No 210
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=21.49 E-value=69 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=15.2
Q ss_pred CCChhhHHHHHHHHHHh
Q 029700 156 DEAPHLVNPLVESFVTR 172 (189)
Q Consensus 156 ~e~p~~~~~~i~~fl~~ 172 (189)
.++|++++++|+.||.+
T Consensus 524 ~e~PeevA~ilr~Wl~e 540 (542)
T PRK06007 524 KEDPEEVAQVLRTWLSE 540 (542)
T ss_pred HhCHHHHHHHHHHHhcC
Confidence 48899999999999975
No 211
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.41 E-value=1.6e+02 Score=17.00 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=7.5
Q ss_pred hcccCCCccEEEcCCCC
Q 029700 135 YGNFDSVEDFIVLPNVG 151 (189)
Q Consensus 135 ~~~~~~~~~~~~l~~~g 151 (189)
+.+.+|+.+++.+-+.|
T Consensus 58 i~~~fP~~kfiLIGDsg 74 (100)
T PF09949_consen 58 ILRDFPERKFILIGDSG 74 (100)
T ss_pred HHHHCCCCcEEEEeeCC
Confidence 33344555554443333
No 212
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.14 E-value=2.1e+02 Score=17.48 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=31.8
Q ss_pred eEEEecCCCCCCC--c-h-------hhhhhcccCCCccEEEcCCCCCCCC--CCChhhHHHHHHHHHHhc
Q 029700 116 VLIAWGDKDPWEP--I-E-------LGRAYGNFDSVEDFIVLPNVGHCPQ--DEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 116 ~lii~g~~D~~~~--~-~-------~~~~~~~~~~~~~~~~l~~~gH~~~--~e~p~~~~~~i~~fl~~~ 173 (189)
+.+..|.+|.... . + ..+.+++..|++.++++.-...... .+..+.+++.+.+..++.
T Consensus 44 vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~n~~l~~~~~~~ 113 (157)
T cd01833 44 VLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDASGNARIAEYNAAIPGVVADL 113 (157)
T ss_pred EEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 5566688887543 1 1 2223444467887776532111111 234577888888887764
No 213
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=20.95 E-value=52 Score=24.98 Aligned_cols=18 Identities=6% Similarity=-0.071 Sum_probs=15.1
Q ss_pred CCcccccceEEeeCchhh
Q 029700 1 MEPEICRGMILLNISLRM 18 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~~~ 18 (189)
++|++|.+++++||+.+.
T Consensus 139 ~~p~rV~rItgLDPAgP~ 156 (442)
T TIGR03230 139 LTKHKVNRITGLDPAGPT 156 (442)
T ss_pred hCCcceeEEEEEcCCCCc
Confidence 368999999999998654
No 214
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=20.85 E-value=53 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.6
Q ss_pred CCcccccceEEeeCch
Q 029700 1 MEPEICRGMILLNISL 16 (189)
Q Consensus 1 ~~P~~v~~lvl~~~~~ 16 (189)
++|++|+++|+++|..
T Consensus 119 ~~p~~v~~lVL~~P~~ 134 (266)
T TIGR03101 119 PLAAKCNRLVLWQPVV 134 (266)
T ss_pred hCccccceEEEecccc
Confidence 4789999999999864
No 215
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=20.61 E-value=80 Score=20.24 Aligned_cols=40 Identities=13% Similarity=-0.074 Sum_probs=19.6
Q ss_pred CCCeEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCC
Q 029700 113 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGH 152 (189)
Q Consensus 113 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH 152 (189)
+.+++.|.|+.+............+.--+..++++.+.|+
T Consensus 69 ~~~vv~i~GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~ 108 (178)
T cd02014 69 DRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDL 108 (178)
T ss_pred CCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCch
Confidence 3567777776665444332222222222355566666554
No 216
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=20.57 E-value=88 Score=12.88 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHHhcc
Q 029700 158 APHLVNPLVESFVTRHA 174 (189)
Q Consensus 158 ~p~~~~~~i~~fl~~~~ 174 (189)
+...+...|.+||.+..
T Consensus 2 ~~~~l~~lI~~yL~~~g 18 (34)
T smart00667 2 SRSELNRLILEYLLRNG 18 (34)
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 35678889999998653
No 217
>COG3910 Predicted ATPase [General function prediction only]
Probab=20.56 E-value=1.5e+02 Score=19.88 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=33.2
Q ss_pred eEEEecCCCCCCCchhhhhhcccCCCccEEEcCCCCCCCC-CCChhhHHHHHHHHHHhc
Q 029700 116 VLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRH 173 (189)
Q Consensus 116 ~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~l~~~gH~~~-~e~p~~~~~~i~~fl~~~ 173 (189)
..+|-+++++++ + .+|++++..+...||--. +|+.|.+ +.+++|+...
T Consensus 179 aQ~IiATHSPiL-------l--AiP~A~I~~~~~~g~~~~~fe~te~~-r~lR~Fl~dp 227 (233)
T COG3910 179 AQIIIATHSPIL-------L--AIPGAEIYEISESGIEERDFEETEHF-RALRDFLNDP 227 (233)
T ss_pred CeEEEEecChhh-------e--eCCCcEEEEEecCCccccchHHHHHH-HHHHHHHhCH
Confidence 455555665542 1 279999999998887644 5666666 7889998753
No 218
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=20.37 E-value=3.3e+02 Score=19.33 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCC------CCCchhhhhhcccCC---CccEE-Ec--CCCCCCCCCCChhhHHHHHHHHHHh
Q 029700 113 KCPVLIAWGDKDP------WEPIELGRAYGNFDS---VEDFI-VL--PNVGHCPQDEAPHLVNPLVESFVTR 172 (189)
Q Consensus 113 ~~P~lii~g~~D~------~~~~~~~~~~~~~~~---~~~~~-~l--~~~gH~~~~e~p~~~~~~i~~fl~~ 172 (189)
..-+|+|.|+-|. .+|..........++ ++-.+ ++ +++-|--+.|.| .+.+.+..||-+
T Consensus 216 ~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lhen~-~v~~yv~~FLw~ 286 (288)
T COG4814 216 NTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLHENP-TVAKYVKNFLWE 286 (288)
T ss_pred CcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccCCCh-hHHHHHHHHhhc
Confidence 3679999999653 445444444443333 33222 34 447898888886 566788888854
No 219
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=20.16 E-value=84 Score=20.20 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.1
Q ss_pred CCCChhhHHHHHHHHHH
Q 029700 155 QDEAPHLVNPLVESFVT 171 (189)
Q Consensus 155 ~~e~p~~~~~~i~~fl~ 171 (189)
..+.++++.+.+.+.+.
T Consensus 142 ~v~~~~el~~al~~a~~ 158 (177)
T cd02010 142 RIESADDLLPVLERALA 158 (177)
T ss_pred EECCHHHHHHHHHHHHh
Confidence 34455555555555554
No 220
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=20.14 E-value=91 Score=20.87 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=13.3
Q ss_pred CCCCCCCeEEEecCCCC
Q 029700 109 LPQVKCPVLIAWGDKDP 125 (189)
Q Consensus 109 l~~i~~P~lii~g~~D~ 125 (189)
++.-.+|||+|++..+.
T Consensus 157 YPe~nlPTl~VY~~G~l 173 (240)
T KOG3170|consen 157 YPESNLPTLLVYHHGAL 173 (240)
T ss_pred CcccCCCeEEEeecchH
Confidence 45557999999998763
No 221
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.01 E-value=1.3e+02 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=29.0
Q ss_pred CCeEEEecCCC-CCCCc-hhhhhhcccCCCccEEEcCCCCCCCCCC
Q 029700 114 CPVLIAWGDKD-PWEPI-ELGRAYGNFDSVEDFIVLPNVGHCPQDE 157 (189)
Q Consensus 114 ~P~lii~g~~D-~~~~~-~~~~~~~~~~~~~~~~~l~~~gH~~~~e 157 (189)
-+.|++...+| +++.. ...+.++....++.+++++|.|-.+|-.
T Consensus 270 ~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLVViEGMGRalhTN 315 (348)
T KOG4584|consen 270 GQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLVVIEGMGRALHTN 315 (348)
T ss_pred cceEEeecCCCCceeeHHhhhHHHHHHhcCCCEEEEeccchhhhhh
Confidence 35666654444 44433 3455566667799999999999877743
Done!