Query 029701
Match_columns 189
No_of_seqs 119 out of 1055
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 17:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 1.4E-50 2.9E-55 330.9 14.9 147 1-157 49-195 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 2.9E-50 6.4E-55 334.7 15.8 155 1-156 62-216 (222)
3 PRK14513 ATP-dependent Clp pro 100.0 2.9E-48 6.3E-53 319.1 16.6 146 1-156 49-194 (201)
4 KOG0840 ATP-dependent Clp prot 100.0 7.1E-49 1.5E-53 328.0 12.8 145 1-155 114-258 (275)
5 PRK14514 ATP-dependent Clp pro 100.0 1.2E-47 2.7E-52 319.2 15.5 145 1-155 76-220 (221)
6 PRK12551 ATP-dependent Clp pro 100.0 3.5E-47 7.5E-52 311.9 15.9 145 1-155 47-191 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 3.9E-47 8.5E-52 312.5 15.7 146 1-156 52-198 (200)
8 PRK14512 ATP-dependent Clp pro 100.0 7.7E-44 1.7E-48 292.3 16.5 151 1-161 45-195 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 3.7E-43 8.1E-48 287.0 15.7 143 1-153 48-190 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 8.2E-42 1.8E-46 280.8 15.6 147 1-157 53-199 (200)
11 cd07013 S14_ClpP Caseinolytic 100.0 1.3E-40 2.7E-45 265.4 15.1 140 2-151 23-162 (162)
12 PRK12553 ATP-dependent Clp pro 100.0 1.1E-40 2.4E-45 275.4 14.5 148 1-157 57-205 (207)
13 PF00574 CLP_protease: Clp pro 100.0 3.4E-41 7.4E-46 271.7 11.0 144 2-155 39-182 (182)
14 cd07017 S14_ClpP_2 Caseinolyti 100.0 8.3E-40 1.8E-44 262.4 12.8 140 2-151 32-171 (171)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 8E-31 1.7E-35 207.3 15.4 131 9-151 30-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 2.7E-29 5.7E-34 202.3 15.2 136 7-160 28-171 (172)
17 cd00394 Clp_protease_like Case 99.9 4.7E-26 1E-30 179.5 14.5 137 3-151 23-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 8.5E-24 1.8E-28 171.7 14.9 143 7-162 28-173 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 1.2E-22 2.6E-27 164.5 14.8 136 8-160 29-177 (178)
20 cd07014 S49_SppA Signal peptid 99.7 1.3E-16 2.9E-21 128.1 13.4 131 5-154 36-169 (177)
21 TIGR00706 SppA_dom signal pept 99.7 7.4E-16 1.6E-20 127.0 14.7 137 6-154 28-195 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.6 6.3E-15 1.4E-19 121.2 13.6 139 4-155 30-201 (208)
23 cd07022 S49_Sppa_36K_type Sign 99.6 1.9E-14 4.1E-19 119.1 14.7 137 5-154 39-206 (214)
24 TIGR00705 SppA_67K signal pept 99.6 4.7E-14 1E-18 132.3 15.5 137 6-154 344-511 (584)
25 cd07019 S49_SppA_1 Signal pept 99.6 1.5E-13 3.3E-18 113.5 15.6 139 5-155 35-204 (211)
26 COG0616 SppA Periplasmic serin 99.5 6.7E-14 1.5E-18 122.5 12.9 140 5-156 94-264 (317)
27 cd07018 S49_SppA_67K_type Sign 99.4 2.4E-12 5.1E-17 107.2 13.3 137 5-154 43-213 (222)
28 COG1030 NfeD Membrane-bound se 99.3 7.4E-12 1.6E-16 112.8 11.6 141 9-166 57-200 (436)
29 PRK10949 protease 4; Provision 99.3 3.5E-11 7.6E-16 113.6 15.6 138 6-155 362-530 (618)
30 PRK11778 putative inner membra 99.3 5.8E-11 1.3E-15 104.5 14.3 134 8-156 122-288 (330)
31 PF01972 SDH_sah: Serine dehyd 99.2 2E-10 4.3E-15 98.3 13.3 134 6-154 87-246 (285)
32 PF01343 Peptidase_S49: Peptid 99.0 3.8E-09 8.3E-14 83.2 11.0 110 42-154 2-140 (154)
33 TIGR00705 SppA_67K signal pept 98.7 3.6E-07 7.7E-12 86.2 13.3 139 5-155 90-270 (584)
34 cd06558 crotonase-like Crotona 98.5 1.6E-06 3.4E-11 69.6 10.3 100 33-154 80-181 (195)
35 PRK10949 protease 4; Provision 98.4 2.8E-06 6.1E-11 80.7 12.7 140 5-156 109-290 (618)
36 PRK05869 enoyl-CoA hydratase; 98.4 5.6E-06 1.2E-10 68.9 11.6 122 14-155 55-188 (222)
37 PRK08258 enoyl-CoA hydratase; 98.4 1.3E-05 2.9E-10 68.6 13.8 120 14-155 65-203 (277)
38 PRK06495 enoyl-CoA hydratase; 98.3 5.5E-06 1.2E-10 70.2 11.0 120 13-155 50-183 (257)
39 COG3904 Predicted periplasmic 98.3 4.4E-06 9.5E-11 69.3 8.7 122 14-150 109-236 (245)
40 PF00378 ECH: Enoyl-CoA hydrat 98.3 4.7E-06 1E-10 69.7 9.1 123 13-156 45-180 (245)
41 PRK07511 enoyl-CoA hydratase; 98.3 1.9E-05 4.2E-10 66.9 12.9 123 13-155 50-187 (260)
42 PRK06210 enoyl-CoA hydratase; 98.2 8.3E-06 1.8E-10 69.6 10.0 96 38-155 100-197 (272)
43 PRK09674 enoyl-CoA hydratase-i 98.2 2.5E-05 5.4E-10 66.1 12.8 122 14-155 50-181 (255)
44 PRK06563 enoyl-CoA hydratase; 98.2 2.2E-05 4.8E-10 66.4 12.2 122 14-155 47-181 (255)
45 PRK09245 enoyl-CoA hydratase; 98.2 2.4E-05 5.3E-10 66.5 12.4 98 38-155 95-192 (266)
46 PRK08150 enoyl-CoA hydratase; 98.2 3.4E-05 7.5E-10 65.4 13.1 122 14-155 48-181 (255)
47 PRK06143 enoyl-CoA hydratase; 98.2 3.6E-05 7.9E-10 65.3 12.9 122 13-155 54-188 (256)
48 PRK06688 enoyl-CoA hydratase; 98.2 2.5E-05 5.5E-10 66.0 11.8 120 14-155 53-185 (259)
49 PLN02888 enoyl-CoA hydratase 98.2 4.7E-05 1E-09 65.0 13.2 120 14-155 58-188 (265)
50 PLN02664 enoyl-CoA hydratase/d 98.2 2.3E-05 5E-10 67.1 11.3 98 37-154 102-199 (275)
51 PRK06023 enoyl-CoA hydratase; 98.2 5.7E-05 1.2E-09 63.8 13.5 122 14-155 54-186 (251)
52 PRK05862 enoyl-CoA hydratase; 98.2 5.1E-05 1.1E-09 64.2 13.1 122 14-155 52-183 (257)
53 PRK08139 enoyl-CoA hydratase; 98.2 2.5E-05 5.4E-10 66.6 11.2 121 14-155 59-192 (266)
54 PRK05809 3-hydroxybutyryl-CoA 98.2 2.7E-05 5.8E-10 66.0 11.3 122 14-155 52-186 (260)
55 PRK05981 enoyl-CoA hydratase; 98.2 3E-05 6.4E-10 65.9 11.5 99 37-155 94-192 (266)
56 PRK06190 enoyl-CoA hydratase; 98.2 5.1E-05 1.1E-09 64.6 12.8 123 13-155 51-183 (258)
57 PRK05995 enoyl-CoA hydratase; 98.1 3.1E-05 6.6E-10 65.7 11.2 122 13-155 51-187 (262)
58 PRK06213 enoyl-CoA hydratase; 98.1 2.3E-05 5E-10 65.3 10.1 122 14-155 48-181 (229)
59 PRK09120 p-hydroxycinnamoyl Co 98.1 3.4E-05 7.3E-10 66.2 11.3 123 13-155 55-193 (275)
60 PRK07110 polyketide biosynthes 98.1 7.4E-05 1.6E-09 63.1 13.1 123 13-155 52-183 (249)
61 PRK08138 enoyl-CoA hydratase; 98.1 8.1E-05 1.8E-09 63.2 13.3 98 37-156 89-188 (261)
62 PRK07938 enoyl-CoA hydratase; 98.1 5.4E-05 1.2E-09 64.0 12.2 120 13-155 48-180 (249)
63 PRK09076 enoyl-CoA hydratase; 98.1 8.9E-05 1.9E-09 62.9 13.1 99 37-155 86-184 (258)
64 PRK07509 enoyl-CoA hydratase; 98.1 2.3E-05 5E-10 66.4 9.6 97 38-154 94-190 (262)
65 PRK07658 enoyl-CoA hydratase; 98.1 4.3E-05 9.2E-10 64.6 11.0 100 36-155 84-183 (257)
66 PRK07260 enoyl-CoA hydratase; 98.1 4.5E-05 9.7E-10 64.5 11.0 123 13-155 49-187 (255)
67 PRK06142 enoyl-CoA hydratase; 98.1 3.3E-05 7.1E-10 65.9 10.1 99 37-155 100-198 (272)
68 PRK07468 enoyl-CoA hydratase; 98.1 4.9E-05 1.1E-09 64.6 11.1 122 13-155 52-188 (262)
69 COG1024 CaiD Enoyl-CoA hydrata 98.1 3.5E-05 7.5E-10 65.2 10.1 120 15-155 54-187 (257)
70 PRK07657 enoyl-CoA hydratase; 98.1 9.7E-05 2.1E-09 62.6 12.8 121 13-155 51-186 (260)
71 PRK07854 enoyl-CoA hydratase; 98.1 8E-05 1.7E-09 62.7 12.1 121 13-153 46-173 (243)
72 TIGR03189 dienoyl_CoA_hyt cycl 98.1 8E-05 1.7E-09 63.1 12.1 121 14-155 48-177 (251)
73 PRK06494 enoyl-CoA hydratase; 98.0 6.8E-05 1.5E-09 63.6 11.5 94 42-155 90-183 (259)
74 PRK12319 acetyl-CoA carboxylas 98.0 6.5E-05 1.4E-09 64.3 11.2 117 9-155 98-215 (256)
75 PRK03580 carnitinyl-CoA dehydr 98.0 7.7E-05 1.7E-09 63.3 11.6 100 36-155 84-183 (261)
76 PLN02921 naphthoate synthase 98.0 8.4E-05 1.8E-09 65.6 11.6 98 38-155 153-250 (327)
77 TIGR02280 PaaB1 phenylacetate 98.0 3.3E-05 7.1E-10 65.4 8.7 96 38-155 85-182 (256)
78 PRK08290 enoyl-CoA hydratase; 98.0 0.00016 3.4E-09 62.6 13.1 96 38-155 110-205 (288)
79 PRK06127 enoyl-CoA hydratase; 98.0 8E-05 1.7E-09 63.6 11.1 96 38-155 98-195 (269)
80 PRK05864 enoyl-CoA hydratase; 98.0 7E-05 1.5E-09 64.2 10.7 100 37-155 100-199 (276)
81 PRK11423 methylmalonyl-CoA dec 98.0 5.2E-05 1.1E-09 64.5 9.8 99 37-155 87-185 (261)
82 PRK07327 enoyl-CoA hydratase; 98.0 0.00013 2.9E-09 62.2 12.3 97 37-155 97-195 (268)
83 PRK08788 enoyl-CoA hydratase; 98.0 0.00013 2.8E-09 63.3 12.2 92 44-155 119-210 (287)
84 PLN03230 acetyl-coenzyme A car 98.0 3.6E-05 7.9E-10 69.7 8.9 114 9-155 221-338 (431)
85 PRK06072 enoyl-CoA hydratase; 98.0 0.00012 2.5E-09 61.9 11.4 121 10-151 43-173 (248)
86 PRK05980 enoyl-CoA hydratase; 98.0 0.0001 2.2E-09 62.4 11.1 96 38-155 92-189 (260)
87 PRK07112 polyketide biosynthes 98.0 6.5E-05 1.4E-09 63.6 9.8 99 37-156 87-185 (255)
88 PRK08260 enoyl-CoA hydratase; 98.0 9.8E-05 2.1E-09 63.9 11.1 99 37-155 104-202 (296)
89 PRK08140 enoyl-CoA hydratase; 98.0 0.00012 2.7E-09 62.0 11.4 98 38-155 91-188 (262)
90 PRK06144 enoyl-CoA hydratase; 97.9 0.0001 2.2E-09 62.7 10.8 99 37-155 93-192 (262)
91 PRK08272 enoyl-CoA hydratase; 97.9 0.0001 2.3E-09 63.9 11.0 96 37-155 118-213 (302)
92 PRK07396 dihydroxynaphthoic ac 97.9 7.2E-05 1.6E-09 64.0 9.8 97 38-155 99-196 (273)
93 TIGR00513 accA acetyl-CoA carb 97.9 3.2E-05 6.9E-10 68.0 7.6 117 9-155 151-268 (316)
94 PRK05674 gamma-carboxygeranoyl 97.9 8.4E-05 1.8E-09 63.4 10.0 98 37-155 92-189 (265)
95 PRK07659 enoyl-CoA hydratase; 97.9 9.1E-05 2E-09 62.9 9.9 117 14-152 53-184 (260)
96 PRK07827 enoyl-CoA hydratase; 97.9 8.7E-05 1.9E-09 62.9 9.8 120 14-154 54-188 (260)
97 PRK05870 enoyl-CoA hydratase; 97.9 4.1E-05 8.9E-10 64.6 7.7 95 38-152 87-181 (249)
98 TIGR01929 menB naphthoate synt 97.9 0.00012 2.6E-09 62.1 10.4 97 37-155 88-186 (259)
99 PLN03214 probable enoyl-CoA hy 97.9 0.00013 2.7E-09 62.8 10.4 99 38-155 99-197 (278)
100 PRK05724 acetyl-CoA carboxylas 97.9 6.1E-05 1.3E-09 66.3 8.3 117 9-155 151-268 (319)
101 TIGR03210 badI 2-ketocyclohexa 97.9 0.0002 4.3E-09 60.7 11.2 98 37-155 85-183 (256)
102 KOG1680 Enoyl-CoA hydratase [L 97.8 0.00012 2.7E-09 63.0 9.3 99 36-156 117-217 (290)
103 PRK12478 enoyl-CoA hydratase; 97.8 0.00017 3.6E-09 62.7 10.3 95 38-155 104-198 (298)
104 PLN02600 enoyl-CoA hydratase 97.8 0.00028 6.1E-09 59.6 11.4 99 38-156 80-178 (251)
105 CHL00198 accA acetyl-CoA carbo 97.8 0.00011 2.4E-09 64.7 9.0 113 9-155 154-271 (322)
106 PRK08259 enoyl-CoA hydratase; 97.8 0.00029 6.2E-09 59.7 11.2 90 44-155 91-182 (254)
107 PLN02267 enoyl-CoA hydratase/i 97.8 0.00026 5.7E-09 59.5 10.8 100 38-157 86-187 (239)
108 PRK07799 enoyl-CoA hydratase; 97.8 0.00024 5.2E-09 60.3 10.0 95 42-156 96-190 (263)
109 TIGR03134 malonate_gamma malon 97.8 0.00029 6.3E-09 59.7 10.4 121 8-156 65-191 (238)
110 PRK08184 benzoyl-CoA-dihydrodi 97.7 0.00032 7E-09 66.0 11.0 100 38-154 115-216 (550)
111 TIGR03200 dearomat_oah 6-oxocy 97.7 0.00038 8.2E-09 62.3 10.8 98 37-156 115-214 (360)
112 PRK08321 naphthoate synthase; 97.7 0.0006 1.3E-08 59.3 11.6 98 38-155 127-225 (302)
113 PRK08252 enoyl-CoA hydratase; 97.7 0.00071 1.5E-08 57.2 11.7 93 43-155 88-180 (254)
114 PRK11730 fadB multifunctional 97.7 0.00079 1.7E-08 65.1 13.2 123 13-155 54-191 (715)
115 TIGR02440 FadJ fatty oxidation 97.6 0.00076 1.6E-08 65.1 12.2 100 36-155 86-187 (699)
116 PLN03229 acetyl-coenzyme A car 97.6 0.00031 6.8E-09 67.5 8.4 114 9-155 242-359 (762)
117 TIGR02437 FadB fatty oxidation 97.5 0.0011 2.4E-08 64.1 11.9 101 35-155 91-191 (714)
118 PRK11154 fadJ multifunctional 97.5 0.0019 4.1E-08 62.5 12.9 99 37-155 92-192 (708)
119 TIGR02441 fa_ox_alpha_mit fatt 97.5 0.0039 8.5E-08 60.6 14.8 123 10-154 57-198 (737)
120 PRK05617 3-hydroxyisobutyryl-C 97.4 0.00039 8.4E-09 61.6 6.5 95 38-155 92-188 (342)
121 PLN02874 3-hydroxyisobutyryl-C 97.4 0.0015 3.2E-08 58.8 9.8 95 40-155 99-193 (379)
122 PLN02988 3-hydroxyisobutyryl-C 97.3 0.0031 6.7E-08 56.9 11.0 121 14-155 57-193 (381)
123 PLN02157 3-hydroxyisobutyryl-C 97.3 0.002 4.2E-08 58.6 9.5 96 40-156 127-222 (401)
124 PLN02820 3-methylcrotonyl-CoA 97.3 0.0029 6.3E-08 59.8 11.0 140 9-157 401-543 (569)
125 TIGR03222 benzo_boxC benzoyl-C 97.3 0.0026 5.6E-08 59.9 10.5 98 38-155 357-466 (546)
126 TIGR03222 benzo_boxC benzoyl-C 97.2 0.0019 4.1E-08 60.8 9.3 100 38-154 111-212 (546)
127 PLN02851 3-hydroxyisobutyryl-C 97.1 0.0052 1.1E-07 55.9 10.6 95 41-156 133-227 (407)
128 KOG1681 Enoyl-CoA isomerase [L 97.0 0.00046 9.9E-09 58.4 2.8 104 36-158 116-219 (292)
129 TIGR01117 mmdA methylmalonyl-C 96.9 0.0039 8.4E-08 58.3 8.6 132 9-157 350-484 (512)
130 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.0046 9.9E-08 58.3 8.2 98 38-155 361-470 (550)
131 COG0825 AccA Acetyl-CoA carbox 96.8 0.017 3.8E-07 50.3 10.8 113 9-155 150-267 (317)
132 PF01039 Carboxyl_trans: Carbo 95.9 0.011 2.3E-07 55.0 4.8 136 9-157 329-467 (493)
133 KOG1682 Enoyl-CoA isomerase [L 95.1 0.038 8.2E-07 46.3 4.7 98 38-156 117-214 (287)
134 PF06833 MdcE: Malonate decarb 94.9 0.32 6.9E-06 41.3 9.8 115 6-154 61-187 (234)
135 PRK05654 acetyl-CoA carboxylas 94.3 0.69 1.5E-05 40.4 10.9 104 9-157 156-269 (292)
136 TIGR00515 accD acetyl-CoA carb 94.2 0.6 1.3E-05 40.7 10.4 103 9-157 155-268 (285)
137 KOG0016 Enoyl-CoA hydratase/is 91.7 0.54 1.2E-05 40.5 6.1 124 12-155 54-196 (266)
138 COG4799 Acetyl-CoA carboxylase 91.2 0.73 1.6E-05 43.4 7.0 138 10-160 360-500 (526)
139 COG0447 MenB Dihydroxynaphthoi 90.0 0.41 8.8E-06 40.6 3.8 99 35-155 105-205 (282)
140 TIGR03133 malonate_beta malona 89.9 1.2 2.5E-05 38.7 6.8 66 10-86 100-176 (274)
141 PRK07189 malonate decarboxylas 89.5 1.1 2.3E-05 39.5 6.3 67 10-87 109-186 (301)
142 KOG1679 Enoyl-CoA hydratase [L 83.7 2.9 6.3E-05 35.5 5.5 101 33-156 111-214 (291)
143 TIGR01117 mmdA methylmalonyl-C 61.1 24 0.00052 33.2 6.2 68 9-87 117-194 (512)
144 PLN02820 3-methylcrotonyl-CoA 59.2 39 0.00085 32.3 7.4 76 9-86 164-244 (569)
145 PF01039 Carboxyl_trans: Carbo 55.7 24 0.00052 32.9 5.3 67 10-87 93-171 (493)
146 CHL00174 accD acetyl-CoA carbo 54.0 44 0.00095 29.4 6.3 65 9-84 168-244 (296)
147 PF01381 HTH_3: Helix-turn-hel 49.5 36 0.00079 21.0 3.9 32 113-144 12-43 (55)
148 PF00681 Plectin: Plectin repe 45.6 13 0.00028 23.0 1.3 19 132-150 17-35 (45)
149 TIGR02675 tape_meas_nterm tape 44.8 53 0.0011 22.6 4.4 29 111-140 45-73 (75)
150 TIGR03070 couple_hipB transcri 44.0 60 0.0013 19.8 4.3 32 113-144 18-49 (58)
151 PF14117 DUF4287: Domain of un 42.2 41 0.0009 22.6 3.4 34 111-144 4-38 (61)
152 TIGR01729 taurine_ABC_bnd taur 40.7 1.3E+02 0.0028 25.3 7.1 30 113-142 227-256 (300)
153 PF06972 DUF1296: Protein of u 40.5 47 0.001 22.3 3.4 33 111-144 7-40 (60)
154 COG0152 PurC Phosphoribosylami 39.3 22 0.00048 30.5 2.1 37 147-185 190-227 (247)
155 PRK09726 antitoxin HipB; Provi 39.1 88 0.0019 21.8 4.9 49 94-142 9-57 (88)
156 smart00250 PLEC Plectin repeat 39.0 25 0.00054 20.8 1.7 19 133-151 18-36 (38)
157 PF07700 HNOB: Heme NO binding 38.9 23 0.0005 27.9 2.1 72 110-189 49-121 (171)
158 COG1099 Predicted metal-depend 37.2 62 0.0013 27.7 4.4 52 123-175 166-230 (254)
159 PF08573 SAE2: DNA repair prot 34.3 22 0.00047 25.6 1.1 10 179-188 77-86 (93)
160 KOG0540 3-Methylcrotonyl-CoA c 33.1 1.5E+02 0.0032 28.0 6.4 72 9-82 384-459 (536)
161 PHA00099 minor capsid protein 31.6 2.5E+02 0.0054 21.9 6.8 33 114-148 82-114 (147)
162 cd01452 VWA_26S_proteasome_sub 28.8 1.8E+02 0.0039 23.6 5.8 45 5-57 103-147 (187)
163 PLN00125 Succinyl-CoA ligase [ 28.5 96 0.0021 27.2 4.4 47 2-58 199-245 (300)
164 PF01466 Skp1: Skp1 family, di 27.3 1.6E+02 0.0035 20.1 4.6 37 108-144 31-68 (78)
165 TIGR03427 ABC_peri_uca ABC tra 26.8 1.3E+02 0.0027 26.5 4.9 36 110-145 226-262 (328)
166 COG3093 VapI Plasmid maintenan 26.6 92 0.002 23.2 3.3 44 103-146 16-59 (104)
167 PF13443 HTH_26: Cro/C1-type H 26.6 1.6E+02 0.0034 18.6 4.2 38 105-142 5-43 (63)
168 PRK02866 cyanate hydratase; Va 24.5 1.6E+02 0.0034 23.3 4.5 33 113-145 21-53 (147)
169 PF12844 HTH_19: Helix-turn-he 24.2 2E+02 0.0042 18.2 4.4 34 111-144 13-46 (64)
170 KOG1552 Predicted alpha/beta h 23.8 2.1E+02 0.0046 24.7 5.5 53 30-88 110-163 (258)
171 PHA01976 helix-turn-helix prot 23.1 1.9E+02 0.0041 18.5 4.2 31 112-142 17-47 (67)
172 TIGR02607 antidote_HigA addict 22.6 1.6E+02 0.0034 19.4 3.7 32 113-144 21-52 (78)
173 cd06567 Peptidase_S41 C-termin 22.3 2.9E+02 0.0064 22.1 6.0 51 9-68 89-166 (224)
174 PF13607 Succ_CoA_lig: Succiny 21.7 1.3E+02 0.0028 23.2 3.5 42 2-56 48-91 (138)
175 TIGR00673 cynS cyanate hydrata 21.6 1.2E+02 0.0027 24.0 3.4 34 113-146 24-57 (150)
176 PRK07857 hypothetical protein; 21.4 1.7E+02 0.0037 21.8 3.9 37 95-131 27-63 (106)
177 TIGR02763 chlamy_scaf chlamydi 21.4 3.6E+02 0.0078 20.2 6.5 36 114-151 52-87 (114)
178 PF05920 Homeobox_KN: Homeobox 21.4 1.4E+02 0.0031 18.0 3.0 18 114-131 17-34 (40)
179 KOG1182 Branched chain alpha-k 21.3 6.3E+02 0.014 23.0 12.0 66 11-87 217-284 (432)
180 TIGR00661 MJ1255 conserved hyp 20.9 1.9E+02 0.004 24.7 4.8 37 11-56 1-37 (321)
181 COG0757 AroQ 3-dehydroquinate 20.7 1.7E+02 0.0038 23.0 4.0 33 14-56 70-102 (146)
182 COG4799 Acetyl-CoA carboxylase 20.6 1.5E+02 0.0034 28.2 4.4 75 9-86 126-202 (526)
183 cd00093 HTH_XRE Helix-turn-hel 20.6 1.8E+02 0.0039 16.4 3.5 31 114-144 16-46 (58)
184 PF04033 DUF365: Domain of unk 20.4 83 0.0018 23.0 2.0 23 123-145 28-50 (97)
185 PF05752 Calici_MSP: Calicivir 20.2 3E+02 0.0065 22.2 5.3 64 123-188 67-142 (167)
186 PF07027 DUF1318: Protein of u 20.1 3.5E+02 0.0076 19.6 5.5 48 77-131 24-71 (95)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-50 Score=330.85 Aligned_cols=147 Identities=37% Similarity=0.565 Sum_probs=143.8
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||+.+++.++|+||||||| |+|++|++|||+|++++++|+|+|.|.|||||++|++||++++|+++|||+
T Consensus 49 l~Lea~~~~k~I~lyINSpG---------G~V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsr 119 (200)
T COG0740 49 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNAR 119 (200)
T ss_pred HHHHhcCCCCCeEEEEeCCC---------cccchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCce
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
+|||||+ +++.|+++|++++++++.+.+..+..+|+++||++.++|+++++||+||||+||++|||||+|++..+.
T Consensus 120 imIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 120 IMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred EEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999998654
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.9e-50 Score=334.72 Aligned_cols=155 Identities=40% Similarity=0.679 Sum_probs=150.5
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||+.+++.++|+||||||||...+++.+|++++|++|||+|++++.+|+|+|+|+|+|+|++|+++|++++|+++|||+
T Consensus 62 l~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~ 141 (222)
T PRK12552 62 LYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHAT 141 (222)
T ss_pred HHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
+|||||+ ++..|++.|+++++++|+++++.+.++|+++||++.++|.++|+|++||||+||++|||||+|+++..
T Consensus 142 iMIHqP~-~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 142 IVLHQPR-SGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred EEeccCC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 9999999 67889999999999999999999999999999999999999999999999999999999999998754
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.9e-48 Score=319.13 Aligned_cols=146 Identities=31% Similarity=0.481 Sum_probs=141.8
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||+++++.++|+||||||| |++++|++|||+|++++.+|+|+|+|+|+|||++|+++|++++|+++|||+
T Consensus 49 l~L~~~~~~~~I~l~INSpG---------G~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~ 119 (201)
T PRK14513 49 LLLDSQNPEQEIQMYINCPG---------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSR 119 (201)
T ss_pred HHhhccCCCCCEEEEEECCC---------CchhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
+|||||+ ++..|++.|+++++++|++.++.+.++|+++||++.++|.++|++++||||+||++|||||+|+++..
T Consensus 120 iMIHqp~-~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 120 IMIHQGS-AGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred EEEecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 9999999 67889999999999999999999999999999999999999999999999999999999999998744
No 4
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-49 Score=328.03 Aligned_cols=145 Identities=46% Similarity=0.673 Sum_probs=142.3
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
||||.+|+.++|++|||||| |++++|++|||+|++++.+|.|+|+|+|+|+|+|||++|+||+||++|||+
T Consensus 114 L~Ld~ed~~K~I~lyINSPG---------G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsr 184 (275)
T KOG0840|consen 114 LYLDSEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSR 184 (275)
T ss_pred HHhhccCCCCCeEEEEeCCC---------CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCce
Confidence 69999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+|||||. ++..|++.|+.++++|+.+.++.+.++|+++||++.|+|.++|+||+||+|+||+||||||+|++..
T Consensus 185 iMIhQP~-gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 185 IMIHQPS-GGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred eEEeccC-CCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCC
Confidence 9999999 7799999999999999999999999999999999999999999999999999999999999999963
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=319.25 Aligned_cols=145 Identities=31% Similarity=0.513 Sum_probs=141.2
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||++++++++|+||||||| |+|++|++|||+|++++.||+|+|.|+|||||++|+++|++++|+++|||+
T Consensus 76 l~L~~~~~~~~I~lyINSpG---------Gsv~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~ 146 (221)
T PRK14514 76 LYLDSVDPGKDISIYINSPG---------GSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSR 146 (221)
T ss_pred HHHhccCCCCCEEEEEECCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+|||||+ ++..|++.|+++++++++++++.+.++|+++||++.++|+++|++++||||+||++|||||+|++..
T Consensus 147 iMiHqP~-~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 147 VMIHQPL-GGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred EEeccCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 9999998 6788999999999999999999999999999999999999999999999999999999999999864
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.5e-47 Score=311.87 Aligned_cols=145 Identities=37% Similarity=0.553 Sum_probs=141.2
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||+++++.++|+||||||| |++++|++|||+|++++.+|+|+|+|+|+|+|++|+++|++++|+++|||+
T Consensus 47 l~l~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~ 117 (196)
T PRK12551 47 LFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSR 117 (196)
T ss_pred HHhhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+|||||+ ++..|++.|+++++++++++++.+.++|+++||++.++|.++|++++||||+||++|||||+|+++.
T Consensus 118 iMIHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 118 IMIHQPL-GGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred EEEecCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 9999998 6788999999999999999999999999999999999999999999999999999999999999864
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=3.9e-47 Score=312.45 Aligned_cols=146 Identities=29% Similarity=0.478 Sum_probs=141.6
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|||+++++.++|+||||||| |++++|++|||+|++++.+|+|+|.|+|+|+|++|+++|++++|+++|||+
T Consensus 52 l~L~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~ 122 (200)
T CHL00028 52 VYLSIEDDTKDLYLFINSPG---------GSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHAR 122 (200)
T ss_pred HHHhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCe
Confidence 68999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccc-ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 81 TKLYLPVVGR-SSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 81 ~miH~p~~~~-~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
+|||||+ ++ ..|++.|+.+++++++++++.+.++|+++||++.++|+++|++++||||+||++|||||+|+++..
T Consensus 123 imiHqp~-~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 123 VMIHQPA-SSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred EEEecCc-cCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 9999998 55 789999999999999999999999999999999999999999999999999999999999998754
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.7e-44 Score=292.35 Aligned_cols=151 Identities=27% Similarity=0.449 Sum_probs=143.2
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
+||+.+++.++|+||||||| |+|++|++|||+|++++.||+|+|.|.|+|||++|+++|++++|+++|||+
T Consensus 45 ~~l~~~~~~~~I~l~INSpG---------G~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~ 115 (197)
T PRK14512 45 LLLEALDSKKPIFVYIDSEG---------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNAR 115 (197)
T ss_pred HHHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCc
Confidence 36788788899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHHhh
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (189)
+|+|||+ +...|++.|++..+++++++++.+.++|+++||++.++++++|++++||||+||++|||||+|+++..++..
T Consensus 116 imiHqP~-~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 116 YLLHQPL-SGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred EEEEcCc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 9999998 667899999999999999999999999999999999999999999999999999999999999998776654
Q ss_pred h
Q 029701 161 K 161 (189)
Q Consensus 161 ~ 161 (189)
.
T Consensus 195 ~ 195 (197)
T PRK14512 195 F 195 (197)
T ss_pred h
Confidence 3
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=3.7e-43 Score=286.96 Aligned_cols=143 Identities=38% Similarity=0.562 Sum_probs=138.2
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
+||+.+++.++|+||||||| |++++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus 48 ~~l~~~~~~~~i~l~InSpG---------G~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~ 118 (191)
T TIGR00493 48 LFLEAEDPEKDIYLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSR 118 (191)
T ss_pred HHhhccCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCce
Confidence 47888888999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeC
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~ 153 (189)
+|||||+ ++..|++.|+++++++++++++.+.++|+++||++.++++++|++++||||+||++|||||+|++
T Consensus 119 imiH~p~-~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 119 IMIHQPL-GGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred EEEecCc-ccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 9999998 56789999999999999999999999999999999999999999999999999999999999986
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=8.2e-42 Score=280.81 Aligned_cols=147 Identities=39% Similarity=0.587 Sum_probs=141.4
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
+||+.+++.++|+||||||| |++++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus 53 ~~l~~~~~~~~I~l~InSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~ 123 (200)
T PRK00277 53 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSR 123 (200)
T ss_pred HHhhccCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCce
Confidence 47888888999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
+|||+|+ +...|++.|++.++++++++++.+.++|+++||++.+++++++++++||||+||++|||||+|+++.++
T Consensus 124 imih~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 124 IMIHQPL-GGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred EEeccCc-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 9999998 678899999999999999999999999999999999999999999999999999999999999998654
No 11
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.3e-40 Score=265.41 Aligned_cols=140 Identities=36% Similarity=0.517 Sum_probs=135.6
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 yL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
||+.+++.++|.|+||||| |++++|++|||+|++++.||+|++.|+|+|+|++|+++|++++|+++|++++
T Consensus 23 ~l~~~~~~~~i~l~InSpG---------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~ 93 (162)
T cd07013 23 FLGAVNPEKDIYLYINSPG---------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMM 93 (162)
T ss_pred HHhcCCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEE
Confidence 6788888899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
|+|+|+ +...|++.|+++..+++++.++.+.++|+++||+++++|+++|++++||||+||++|||||+|
T Consensus 94 ~ih~~~-~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 94 MIHQPW-GGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred EEccCc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999998 677899999999999999999999999999999999999999999999999999999999986
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-40 Score=275.38 Aligned_cols=148 Identities=35% Similarity=0.489 Sum_probs=140.4
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 1 lyL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
+||+++++.++|+||||||| |++++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus 57 ~~l~~~~~~~~I~l~INSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~ 127 (207)
T PRK12553 57 LVLESIDPDRDITLYINSPG---------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNAR 127 (207)
T ss_pred HHHHhCCCCCCEEEEEeCCC---------CcHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCch
Confidence 36778888899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 81 TKLYLPVV-GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 81 ~miH~p~~-~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
+|+|||+. +...|++.|+++++++++++++.+.++|+++||++.+++++++++++||||+||++|||||+|+++..+
T Consensus 128 imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 128 ILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred hhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 99999985 346899999999999999999999999999999999999999999999999999999999999998654
No 13
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=3.4e-41 Score=271.69 Aligned_cols=144 Identities=37% Similarity=0.556 Sum_probs=134.0
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 yL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
||+++++.++|+|+||||| |++++|++|||+|++++.+|+|+|.|.|+|+|++|+++|++.+|++.|+|.|
T Consensus 39 ~l~~~~~~~~i~i~INSpG---------G~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~ 109 (182)
T PF00574_consen 39 YLENEDKNKPINIYINSPG---------GDVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRF 109 (182)
T ss_dssp HHHHHTSSSEEEEEEEECE---------BCHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EE
T ss_pred HHhccCCCceEEEEEcCCC---------CccHHHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEE
Confidence 5777888899999999999 9999999999999999999999999999999999999999988999999999
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
|+|+|+ ....|+..++...++++++.++.+.++|+++||+++++|.++|++++||+|+||++|||||+|++++
T Consensus 110 m~H~p~-~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 110 MIHQPS-TGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp EES-CE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred Eeecce-eecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 999998 6677899999999999999999999999999999999999999999999999999999999999863
No 14
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=8.3e-40 Score=262.42 Aligned_cols=140 Identities=44% Similarity=0.660 Sum_probs=134.4
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 yL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
|++.+++.++|+|+||||| |++++|++|||.|++++.+|+|++.|+|+|+|++|+++|++++|++.|||++
T Consensus 32 ~~~~~~~~~~i~l~inSpG---------G~v~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~ 102 (171)
T cd07017 32 YLESEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRI 102 (171)
T ss_pred HHHccCCCCceEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHH
Confidence 5677777799999999999 9999999999999999999999999999999999999999989999999999
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
|+|+|+ .+..|++.|+...++++.++++.+.++|+++||++.+++.++|++++||||+||++|||||+|
T Consensus 103 ~~h~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 103 MIHQPL-GGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 999998 567888999999999999999999999999999999999999999999999999999999987
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.97 E-value=8e-31 Score=207.32 Aligned_cols=131 Identities=29% Similarity=0.362 Sum_probs=125.5
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccc
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~ 88 (189)
.++|.|+||||| |++.+|++|++.|+.++.||+|++.|.|+|+|++|+++|+ +|++.|++.||+|+|+
T Consensus 30 ~~~i~l~inspG---------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~~~~~a~~~~~~~~- 97 (160)
T cd07016 30 DSDITVRINSPG---------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVEMPPNAMLMIHNPS- 97 (160)
T ss_pred CCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEEECCCcEEEEECCc-
Confidence 389999999999 9999999999999999999999999999999999999996 7999999999999998
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 89 GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 89 ~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
+...|+..++....+++++.++.+.+.|++++|++.+++++++.+++||+++||+++||||+|
T Consensus 98 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 98 TGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 567788889999999999999999999999999999999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.96 E-value=2.7e-29 Score=202.32 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=121.4
Q ss_pred CCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhccCCCceecccCceEEE
Q 029701 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 7 ~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~---G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
++.+.|.|+||||| |.+++++.||+.|++++.||+|+|. |.|+|+|++|+++|+ +|+|.|++.++.
T Consensus 28 ~~~~~i~l~inSPG---------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~--~i~m~p~s~iG~ 96 (172)
T cd07015 28 DNAEAIIIELDTPG---------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGA 96 (172)
T ss_pred CCCCeEEEEEECCC---------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC--ceEECCCCEEEE
Confidence 45789999999999 9999999999999999999999999 999999999999996 699999999999
Q ss_pred eccccccccCC-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHH
Q 029701 84 YLPVVGRSSGP-----VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158 (189)
Q Consensus 84 H~p~~~~~~G~-----~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~ 158 (189)
|+|. .. .|+ ..+.+....++.++++ +++++|++.+.+++++.+++|||++||++||+||.|.++..++
T Consensus 97 ~~pi-~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 97 CRPI-LG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred cccc-cc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHH
Confidence 9997 33 344 4566666666666554 9999999999999999999999999999999999999998876
Q ss_pred hh
Q 029701 159 YE 160 (189)
Q Consensus 159 ~~ 160 (189)
+.
T Consensus 170 l~ 171 (172)
T cd07015 170 LK 171 (172)
T ss_pred hh
Confidence 54
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.94 E-value=4.7e-26 Score=179.51 Aligned_cols=137 Identities=23% Similarity=0.320 Sum_probs=124.1
Q ss_pred cCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEE
Q 029701 3 LDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (189)
Q Consensus 3 L~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~m 82 (189)
++.+++.+.|.|++|||| |++..+..|+++|+..+.||++++.|.|+|+|++|+++|+ +|++.|++.++
T Consensus 23 a~~d~~~~~ivl~~~s~G---------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d--~~~~~~~a~~~ 91 (161)
T cd00394 23 AEADNSVKAIVLEVNTPG---------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN--KIVMAPGTRVG 91 (161)
T ss_pred HHhCCCCceEEEEEECCC---------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC--EEEECCCCEEE
Confidence 345566789999999999 9999999999999999999999999999999999999995 89999999999
Q ss_pred EeccccccccCC--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 83 LYLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 83 iH~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
+|+|.. ...+. ..+.+...+.++.+.+.+.+.+++++|++.+++++++.++.||+++||+++||||+|
T Consensus 92 ~~g~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 92 SHGPIG-GYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred EeeeEE-ecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 999983 33443 366667778899999999999999999999999999999999999999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.91 E-value=8.5e-24 Score=171.75 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=119.3
Q ss_pred CCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhccCCCceecccCceEEE
Q 029701 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 7 ~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~---G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
++.+.|.|+||||| |++.++..|++.|+.++.||.+.+. |.|+|+|++|+++|| .|++.|+|+|++
T Consensus 28 ~~~~~vvl~InSpG---------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D--~iva~p~a~~g~ 96 (187)
T cd07020 28 GGADALIIELDTPG---------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAAH--IAAMAPGTNIGA 96 (187)
T ss_pred CCCCEEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCC--ceeECCCCcEEe
Confidence 34688999999999 9999999999999999999999998 999999999999995 799999999999
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHHhhhh
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~ 162 (189)
|.|.. ...+...+.....+.+..+. .+...|++++|++.+.+++++.+++||+++||+++||||+|.++.+++....
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~~ 173 (187)
T cd07020 97 AHPVA-IGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKL 173 (187)
T ss_pred ccccc-cCCCCcchHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHHc
Confidence 99973 22222223333344444444 4577899999999999999999999999999999999999999876655433
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.90 E-value=1.2e-22 Score=164.48 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=116.7
Q ss_pred CCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc
Q 029701 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (189)
Q Consensus 8 ~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~ 87 (189)
+.+.|.|+||||| |.++++..|++.|+.++.||++++.|.|+|+|++|+++++ +++|.|++.++.|.|.
T Consensus 29 ~~~~ivl~inspG---------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d--~i~m~p~a~iG~~~~v 97 (178)
T cd07021 29 GADAVVLDIDTPG---------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD--EIYMAPGATIGAAEPI 97 (178)
T ss_pred CCCeEEEEEECcC---------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC--eEEECCCCeEecCeeE
Confidence 4689999999999 9999999999999999999999999999999999999994 8999999999999997
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCC-------------CcccHHHHHHcCCceEEeCC
Q 029701 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP-------------KYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~-------------~~lsa~EA~e~GliD~I~~~ 154 (189)
....+...+ +.+.+....+.+.|++++|++.+.++.+++++ .|||++||+++|++|.|.++
T Consensus 98 -~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 98 -PGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred -cCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 333332222 23333444566679999999999999999998 59999999999999999998
Q ss_pred chHHhh
Q 029701 155 QDAAYE 160 (189)
Q Consensus 155 ~~~~~~ 160 (189)
..+++.
T Consensus 172 ~~~ll~ 177 (178)
T cd07021 172 LDELLV 177 (178)
T ss_pred HHHHhh
Confidence 877653
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.72 E-value=1.3e-16 Score=128.10 Aligned_cols=131 Identities=20% Similarity=0.185 Sum_probs=111.3
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHh---hcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~---~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
.++..+.|.|.+||+| |++.....+.++++ .++.||.+++.|.|+|.|+.|+++++ .|++.|++.|
T Consensus 36 ~d~~v~~vvl~~~~~g---------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D--~i~a~~~a~~ 104 (177)
T cd07014 36 LDPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANPSTLV 104 (177)
T ss_pred cCCCceEEEEEeeCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC--EEEECCCCeE
Confidence 3445678999999999 88887777776654 45799999999999999999999995 7999999999
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
++|..+. + .......+..+.+.+.+.+++..|++.+.+.+++..+.||+++||+++||||+|...
T Consensus 105 ~~~G~~~----~----~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 105 GSIGIFG----V----QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred EEechHh----h----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 9987652 1 112234677888899999999999999999999999999999999999999999874
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.69 E-value=7.4e-16 Score=126.99 Aligned_cols=137 Identities=22% Similarity=0.231 Sum_probs=109.9
Q ss_pred CCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhccCCCceecccCceE--
Q 029701 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST-- 81 (189)
Q Consensus 6 ~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~--~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~-- 81 (189)
++..+.|.|++|||| |++..+..|++.|+.++ .||++++.|.|+|.|++|+++|+ +|++.|++.+
T Consensus 28 d~~i~~vvl~~~s~G---------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD--~i~a~p~a~vg~ 96 (207)
T TIGR00706 28 DKSIKALLLRINSPG---------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAAD--EIVANPGTITGS 96 (207)
T ss_pred CCCccEEEEEecCCC---------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCC--EEEECCCCeEEe
Confidence 345688999999999 99999999999999998 99999999999999999999995 8999999875
Q ss_pred ----EEecccc------c-----cccC------------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCC
Q 029701 82 ----KLYLPVV------G-----RSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (189)
Q Consensus 82 ----miH~p~~------~-----~~~G------------~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 134 (189)
|-|.... + ...| +..+-+...+.|+.+.+.+.+.+++..|++.++++++++..
T Consensus 97 iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~ 176 (207)
T TIGR00706 97 IGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGR 176 (207)
T ss_pred eeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCC
Confidence 3332110 0 0001 12233344457777888999999999999999999988765
Q ss_pred CcccHHHHHHcCCceEEeCC
Q 029701 135 KYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~ 154 (189)
. ++++||+++||||+|...
T Consensus 177 ~-~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 177 V-FTGRQALKLRLVDKLGTE 195 (207)
T ss_pred c-ccHHHHHHcCCCcccCCH
Confidence 5 699999999999999764
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.63 E-value=6.3e-15 Score=121.20 Aligned_cols=139 Identities=18% Similarity=0.172 Sum_probs=109.7
Q ss_pred CCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 4 DFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 4 ~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~---~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
..++..+.|.|.+|||| |++..+..|++.|+.. +.||++++.|.|+|+|..|+++|+ +|++.|+|.
T Consensus 30 ~~d~~i~~ivl~~~s~G---------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD--~i~a~~~s~ 98 (208)
T cd07023 30 REDDSVKAVVLRINSPG---------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAAD--KIVANPTTI 98 (208)
T ss_pred HhCCCCcEEEEEEECCC---------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCC--EEEECCCCe
Confidence 34556789999999999 9999999999888644 579999999999999999999995 899999998
Q ss_pred E------EEec------------cccccccC------------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 029701 81 T------KLYL------------PVVGRSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKD 130 (189)
Q Consensus 81 ~------miH~------------p~~~~~~G------------~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 130 (189)
+ |.|. +.. ...| +..+-+.....|+.+.+.+.+.+++..|++.+++.++
T Consensus 99 ~g~iG~~~~~~~~~~~l~k~Gi~~~~-~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~ 177 (208)
T cd07023 99 TGSIGVIGQGPNLEELLDKLGIERDT-IKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKL 177 (208)
T ss_pred EEeCcEEEecCCHHHHHHhcCCceEE-EecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 6 3331 110 0011 1224444556788888999999999999999999988
Q ss_pred hcCCCcccHHHHHHcCCceEEeCCc
Q 029701 131 IQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 131 ~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+... +++++|++.||||+|....
T Consensus 178 ~~~~~-~~a~~A~~~gLiD~i~~~~ 201 (208)
T cd07023 178 ADGRV-WTGRQALELGLVDELGGLD 201 (208)
T ss_pred cCCcE-EEHHHHHHcCCCcccCCHH
Confidence 87655 5799999999999997643
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.61 E-value=1.9e-14 Score=119.09 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=110.2
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhccCCCceecccCceE-
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST- 81 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~--~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~- 81 (189)
.++..+.|.|.+||+| |++.....|++.|+..+ .||++++.|.|+|.|..|+++|+ ++++.|++.+
T Consensus 39 ~d~~i~~Vvl~~~s~g---------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~~a~~g 107 (214)
T cd07022 39 ADPDVRAIVLDIDSPG---------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTPTAGVG 107 (214)
T ss_pred hCCCCcEEEEEEeCCC---------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcCCCeEE
Confidence 3455688999999999 99999999999999887 99999999999999999999995 8999999985
Q ss_pred -----EEecccc------c-----cccC------------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC
Q 029701 82 -----KLYLPVV------G-----RSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR 133 (189)
Q Consensus 82 -----miH~p~~------~-----~~~G------------~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~ 133 (189)
+.|.... + ...| +..+-+...+.++.+.+.+.+.+++..|++.+++.+.+
T Consensus 108 ~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~-- 185 (214)
T cd07022 108 SIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE-- 185 (214)
T ss_pred eeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--
Confidence 2222210 0 0011 12333445567778889999999999999999999888
Q ss_pred CCcccHHHHHHcCCceEEeCC
Q 029701 134 PKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 134 ~~~lsa~EA~e~GliD~I~~~ 154 (189)
...++++||+++||||+|...
T Consensus 186 ~~~~~~~~Al~~gLvD~i~~~ 206 (214)
T cd07022 186 GGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred cCeeeHHHHHHcCCCcccCCH
Confidence 777899999999999999764
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.58 E-value=4.7e-14 Score=132.31 Aligned_cols=137 Identities=22% Similarity=0.228 Sum_probs=110.9
Q ss_pred CCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhccCCCceecccCceE-
Q 029701 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST- 81 (189)
Q Consensus 6 ~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~---~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~- 81 (189)
++..+.|.|+||||| |++.++-.|++.|+. .+.||++.+.|+|+|.|.+|.++|+ ++++.|++.+
T Consensus 344 D~~VkaIVLrinSpG---------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD--~I~a~p~t~~G 412 (584)
T TIGR00705 344 DPDIKAVVLRINSPG---------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAAD--YIVASPNTITG 412 (584)
T ss_pred CCCceEEEEEecCCC---------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCC--EEEECCCCeee
Confidence 344689999999999 999999999999874 3589999999999999999999995 7999999976
Q ss_pred -----EEeccc------cc-----ccc-----------CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCC
Q 029701 82 -----KLYLPV------VG-----RSS-----------GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (189)
Q Consensus 82 -----miH~p~------~~-----~~~-----------G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 134 (189)
+.+... ++ ... .+..+.+.....++...+.+.+.+++..|++.++++.+.+..
T Consensus 413 SIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Gr 492 (584)
T TIGR00705 413 SIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGR 492 (584)
T ss_pred cCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCC
Confidence 544211 00 001 134455566778888889999999999999999999888865
Q ss_pred CcccHHHHHHcCCceEEeCC
Q 029701 135 KYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~ 154 (189)
. ++++||+++||||+|..-
T Consensus 493 v-~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 493 V-WTGEDAVSNGLVDALGGL 511 (584)
T ss_pred C-cCHHHHHHcCCcccCCCH
Confidence 5 599999999999999653
No 25
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.56 E-value=1.5e-13 Score=113.50 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=107.5
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHH---hhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i---~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
.++..+.|.|.+||+| |++.+...+++.| +.++.||++++.|.|+|.|+.|+++|+ .+++.|++.+
T Consensus 35 ~d~~v~~ivL~~~s~G---------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD--~i~a~~~a~~ 103 (211)
T cd07019 35 LDPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN--YIVANPSTLT 103 (211)
T ss_pred hCCCceEEEEEEcCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC--EEEEcCCCEE
Confidence 3445688999999999 9999988888865 456789999999999999999999995 7999999886
Q ss_pred EEeccc------------cc------cccC----------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC
Q 029701 82 KLYLPV------------VG------RSSG----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR 133 (189)
Q Consensus 82 miH~p~------------~~------~~~G----------~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~ 133 (189)
...-.. .+ ...| +.++-+.....++.+.+.+.+.+++..+++++++.+.. +
T Consensus 104 gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~-~ 182 (211)
T cd07019 104 GSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIA-Q 182 (211)
T ss_pred EEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhc-C
Confidence 322110 00 0001 11222233456788889999999999999999998865 4
Q ss_pred CCcccHHHHHHcCCceEEeCCc
Q 029701 134 PKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 134 ~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+++++||+++||||+|...+
T Consensus 183 ~~~~~~~~A~~~GLvD~i~~~~ 204 (211)
T cd07019 183 GHVWTGQDAKANGLVDSLGDFD 204 (211)
T ss_pred CcEEeHHHHHHcCCcccCCCHH
Confidence 6899999999999999997743
No 26
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.55 E-value=6.7e-14 Score=122.49 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=110.2
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCC--CeEEEEccccccHHHHHHhccCCCceecccCceE-
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKS--KVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST- 81 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~--~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~- 81 (189)
.+++.+.|.|+||||| |++.++..||+.|+.++. ||++++-++|||.|++|.++++ +.+|.|+|.+
T Consensus 94 ~~~~vk~vvL~inSPG---------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--~I~a~p~si~G 162 (317)
T COG0616 94 ADPSVKAVVLRINSPG---------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--KIVADPSSITG 162 (317)
T ss_pred cCCCCceEEEEEECcC---------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--EEEecCCceee
Confidence 3456799999999999 999999999999998876 6999999999999999999995 8999999984
Q ss_pred -----EEecccc------c-----cccCC------------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC
Q 029701 82 -----KLYLPVV------G-----RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR 133 (189)
Q Consensus 82 -----miH~p~~------~-----~~~G~------------~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~ 133 (189)
+.|.... + ...|. ..+.......++...+.+++.+++..+.+.++ ......
T Consensus 163 SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~-~~~~a~ 241 (317)
T COG0616 163 SIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEA-VDKLAT 241 (317)
T ss_pred eceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHhc
Confidence 3332210 0 01111 12222334577777888999999999999998 445566
Q ss_pred CCcccHHHHHHcCCceEEeCCch
Q 029701 134 PKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 134 ~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
+..+++++|++.||||++.+...
T Consensus 242 g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 242 GRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred cceecHHHhhhcCCchhcCCHHH
Confidence 88889999999999999987654
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.44 E-value=2.4e-12 Score=107.19 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=107.5
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~---~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
.++..+.|.|.+|||| |.+.....|++.|+. .+.||++++.| |+|.+.+|.++++ ++++.|++.+
T Consensus 43 ~d~~ik~vvL~~~s~g---------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad--~I~a~p~~~v 110 (222)
T cd07018 43 EDDRIKGIVLDLDGLS---------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAAD--EIYLNPSGSV 110 (222)
T ss_pred cCCCeEEEEEECCCCC---------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCC--EEEECCCceE
Confidence 3445688999999999 999999999998864 46899999887 9999999999995 8999999998
Q ss_pred EEeccccc----------------------------ccc-C--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Q 029701 82 KLYLPVVG----------------------------RSS-G--PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKD 130 (189)
Q Consensus 82 miH~p~~~----------------------------~~~-G--~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 130 (189)
.+.-.... .+. . +..+-+...+.++.+.+.+.+.+++..+++.++++++
T Consensus 111 g~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~ 190 (222)
T cd07018 111 ELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEAL 190 (222)
T ss_pred EeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 77632210 000 0 1122223345666778889999999999999999888
Q ss_pred hcCCCcccHHHHHHcCCceEEeCC
Q 029701 131 IQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 131 ~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
.+ ...+++++|++.||||+|...
T Consensus 191 ~~-~~~~~~~~A~~~GLvD~i~~~ 213 (222)
T cd07018 191 ID-LGGDSAEEALEAGLVDGLAYR 213 (222)
T ss_pred HH-cCCcHHHHHHHCCCCCcCCcH
Confidence 77 778999999999999999854
No 28
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.4e-12 Score=112.78 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=117.9
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEE---ccccccHHHHHHhccCCCceecccCceEEEec
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVN---CGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~---~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~ 85 (189)
.+.+.|.+|+|| |-+++...|...|.+++.||+.++ -++|+|+|++|+++++ .-+|.|++.+---+
T Consensus 57 a~~vvl~ldTPG---------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~h--iaaMAPgT~iGaa~ 125 (436)
T COG1030 57 AAAVVLELDTPG---------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATH--IAAMAPGTNIGAAT 125 (436)
T ss_pred CcEEEEEecCCC---------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcC--hhhhCCCCcccccc
Confidence 478999999999 999999999999999999988887 3479999999999995 67999999999999
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHHhhhhchH
Q 029701 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRDYD 165 (189)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~~~ 165 (189)
|... .|+..+-+. ..+.-..+.+-.++..|+..+..+++..++.-++++||+++|+||-|..+..+++.+.|++
T Consensus 126 Pi~~--~g~~~~~~~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~ 199 (436)
T COG1030 126 PIAG--GGTSAKEAN----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGR 199 (436)
T ss_pred eecC--CCCCccchh----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccCC
Confidence 8742 233322111 2223345666789999999999999999999999999999999999999999988777766
Q ss_pred H
Q 029701 166 M 166 (189)
Q Consensus 166 ~ 166 (189)
.
T Consensus 200 ~ 200 (436)
T COG1030 200 S 200 (436)
T ss_pred c
Confidence 5
No 29
>PRK10949 protease 4; Provisional
Probab=99.33 E-value=3.5e-11 Score=113.64 Aligned_cols=138 Identities=25% Similarity=0.258 Sum_probs=107.0
Q ss_pred CCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhccCCCceecccCceE-
Q 029701 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST- 81 (189)
Q Consensus 6 ~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~---~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~- 81 (189)
++..+.|.|+||||| |++...-.|++.|+.. +.||++.+.++|+|.|.+|.++++ +.++.|.+.+
T Consensus 362 D~~vkaVvLrInSpG---------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad--~I~a~p~t~tG 430 (618)
T PRK10949 362 DPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPAN--YIVASPSTLTG 430 (618)
T ss_pred CCCCcEEEEEecCCC---------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcC--EEEECCCCcee
Confidence 456789999999999 9999999999999644 589999999999999999999995 7899997763
Q ss_pred -----EEecccc------c-----cccC-----------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCC
Q 029701 82 -----KLYLPVV------G-----RSSG-----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (189)
Q Consensus 82 -----miH~p~~------~-----~~~G-----------~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 134 (189)
+.|.-.. | ...+ +.++-+.....++...+.+.+.+++..+++.+++++.. .+
T Consensus 431 SIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia-~G 509 (618)
T PRK10949 431 SIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIA-QG 509 (618)
T ss_pred eCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHh-cC
Confidence 3332110 0 0001 12222333456777788899999999999999998754 56
Q ss_pred CcccHHHHHHcCCceEEeCCc
Q 029701 135 KYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.++++||++.||||++..-.
T Consensus 510 rv~tg~~A~~~GLVD~lG~~~ 530 (618)
T PRK10949 510 HVWTGQDAKANGLVDSLGDFD 530 (618)
T ss_pred CcccHHHHHHcCCCccCCCHH
Confidence 889999999999999997644
No 30
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.30 E-value=5.8e-11 Score=104.50 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCCCCCCccCCCccHHH---HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEe
Q 029701 8 ASKPIYLYINSSGTQNEKKESVGAETD---AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (189)
Q Consensus 8 ~~~~I~l~INSpG~~~~~~~~~G~v~~---g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH 84 (189)
+.+.|.|.||||| |++.. +......++..+.||++++.++|+|.|.+|.++++ +.++.|.+.+...
T Consensus 122 ~~~aVvLridSpG---------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD--~I~A~P~a~vGSI 190 (330)
T PRK11778 122 PGDEVLLRLESPG---------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVAD--KIIAAPFAIVGSI 190 (330)
T ss_pred CCCeEEEEEeCCC---------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCC--EEEECCCCeEEee
Confidence 3468999999999 88866 33334455666789999999999999999999994 7899999985321
Q ss_pred c-----cccc------------cccC------------ChHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHhhcCC
Q 029701 85 L-----PVVG------------RSSG------------PVTDMWRKAKDLEANAESYIELLAKGTG-KPKEEIAKDIQRP 134 (189)
Q Consensus 85 ~-----p~~~------------~~~G------------~~~dl~~~~~~l~~~~~~~~~~ya~~tg-~~~e~i~~~~~~~ 134 (189)
- |... ...| +..+-+...++|+.+.+.+.+.+++..+ .+. ++.. .+
T Consensus 191 GVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~---~~va-~G 266 (330)
T PRK11778 191 GVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDI---DKVA-TG 266 (330)
T ss_pred eeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCH---HHHH-hC
Confidence 1 1100 0011 1223334455777778888888888764 333 3333 35
Q ss_pred CcccHHHHHHcCCceEEeCCch
Q 029701 135 KYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~~~ 156 (189)
..++++||++.||||+|...++
T Consensus 267 ~v~~g~~Al~~GLVD~Ig~~dd 288 (330)
T PRK11778 267 EHWYGQQALELGLVDEIQTSDD 288 (330)
T ss_pred CCcCHHHHHHCCCCCcCCCHHH
Confidence 6689999999999999987654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.23 E-value=2e-10 Score=98.31 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=94.5
Q ss_pred CCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEec
Q 029701 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (189)
Q Consensus 6 ~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~ 85 (189)
.++.++|.|.||||| |.+.++..|.+.|+.++.++++++-..|.|+||+|+++++ +-+|.|+|.+.--.
T Consensus 87 ~~~~~~IdLii~TpG---------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaAD--eIvM~p~a~LGpiD 155 (285)
T PF01972_consen 87 APKDKPIDLIIHTPG---------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAAD--EIVMGPGAVLGPID 155 (285)
T ss_pred cCCCCceEEEEECCC---------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCC--eEEECCCCccCCCC
Confidence 345678999999999 9999999999999999999999999999999999999995 78999999987555
Q ss_pred cccccccC-------------ChHH----HH-HHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHhhcCC-----CcccH
Q 029701 86 PVVGRSSG-------------PVTD----MW-RKAKDLEANAESYIELLAKGTGKPKEE---IAKDIQRP-----KYMQA 139 (189)
Q Consensus 86 p~~~~~~G-------------~~~d----l~-~~~~~l~~~~~~~~~~ya~~tg~~~e~---i~~~~~~~-----~~lsa 139 (189)
|.++..-. ..+| +. ...+.+...++.+.+.+.++. +.++ |.+.+..+ .-+|+
T Consensus 156 Pqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~~--~~eka~~ia~~L~~g~~tHdypi~~ 233 (285)
T PF01972_consen 156 PQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDKM--DEEKAEEIAEKLSSGKWTHDYPITV 233 (285)
T ss_pred ccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCCCCCCCH
Confidence 55321100 0011 00 112234444444455554443 4443 44445444 45999
Q ss_pred HHHHHcCCceEEeCC
Q 029701 140 KEAIVYGLADKIIDS 154 (189)
Q Consensus 140 ~EA~e~GliD~I~~~ 154 (189)
+||++.|| .|-++
T Consensus 234 eea~~lGL--~V~t~ 246 (285)
T PF01972_consen 234 EEAKELGL--PVSTD 246 (285)
T ss_pred HHHHHcCC--CcCCC
Confidence 99999999 55443
No 32
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.02 E-value=3.8e-09 Score=83.23 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=79.2
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccc---------------------c------cccCC
Q 029701 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---------------------G------RSSGP 94 (189)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~---------------------~------~~~G~ 94 (189)
.+..+.||++++.++++|.+.+|+++|+ +.|+.|.+.+...-... + .....
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad--~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAAD--EIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSS--EEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCC--EEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 4677899999999999999999999994 78999999864332110 0 00111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 95 --VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 95 --~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
..+-+...+.|+.+.+.+.+.+++..|++.++++++.+. ..|+++||++.||||+|...
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~ 140 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTF 140 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCH
Confidence 123333456777788899999999999999999988876 88899999999999999754
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.67 E-value=3.6e-07 Score=86.19 Aligned_cols=139 Identities=17% Similarity=0.085 Sum_probs=102.6
Q ss_pred CCCCCCCeEEEEcC-CCCCCCccCCCccHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 5 FDNASKPIYLYINS-SGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 5 ~~~~~~~I~l~INS-pG~~~~~~~~~G~v~~g~~Iyd~i~~---~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
.++..+.|.|.||| || |.+.....|++.|+. .+.||+++..+. +|.+.+|.+++ ++.|+.|.+.
T Consensus 90 ~D~~IkgIvL~i~~~~g---------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~A--D~I~~~p~G~ 157 (584)
T TIGR00705 90 DDRRIEGLVFDLSNFSG---------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFA--DEIILNPMGS 157 (584)
T ss_pred cCCCceEEEEEccCCCC---------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhC--CEEEECCCce
Confidence 34556899999996 56 777777889998874 458999987755 68888888888 4789999998
Q ss_pred EEEecccc---------------------c-------ccc-C--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 029701 81 TKLYLPVV---------------------G-------RSS-G--PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK 129 (189)
Q Consensus 81 ~miH~p~~---------------------~-------~~~-G--~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 129 (189)
+.++-... + .+. . +..+-+.....++.+.+.+.+.+++..+++.+++..
T Consensus 158 v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~ 237 (584)
T TIGR00705 158 VDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAP 237 (584)
T ss_pred EEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 86543210 0 010 0 122223344577778889999999999999999988
Q ss_pred hhcCCCc-------ccHHHHHHcCCceEEeCCc
Q 029701 130 DIQRPKY-------MQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 130 ~~~~~~~-------lsa~EA~e~GliD~I~~~~ 155 (189)
..+.-.| .++++|++.||||+|....
T Consensus 238 ~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d 270 (584)
T TIGR00705 238 YAQGLLELLQKLNGDGARYALAEKLVTAVCSYA 270 (584)
T ss_pred HHhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence 8765444 3899999999999998654
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.47 E-value=1.6e-06 Score=69.58 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHH
Q 029701 33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAE 110 (189)
Q Consensus 33 ~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~ 110 (189)
.....++..|..++.|+.+.+.|.|.+.|+.+++++ +.|++.+++.|.+..+..+... |....
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~~~~------------- 144 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGGTQR------------- 144 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcHHHH-------------
Confidence 344667777888899999999999999999999998 5899999998888665533221 21111
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 111 ~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
+.++.| .....+++-.+..++++||+++||||++.+.
T Consensus 145 -----l~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 145 -----LPRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred -----HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 111112 3333445556889999999999999999986
No 35
>PRK10949 protease 4; Provisional
Probab=98.44 E-value=2.8e-06 Score=80.65 Aligned_cols=140 Identities=17% Similarity=0.079 Sum_probs=96.8
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHH-HHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAET-DAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~-~g~~Iyd~i~~---~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
.++..+.|.|.|||+| |... ....|++.|+. .+.||+++ ...+++.+.+|.+++ ++.|+.|.+.
T Consensus 109 ~D~rIkgivL~i~s~g---------G~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaA--D~I~l~P~G~ 176 (618)
T PRK10949 109 DDRNITGIVLDLKNFA---------GADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFA--NKIYLSPQGV 176 (618)
T ss_pred cCCCceEEEEEeCCCC---------CccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhC--CEEEECCCce
Confidence 3556689999999998 6544 44678887754 45789886 445567888888888 4789999998
Q ss_pred EEEeccccc----------------------------cc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 029701 81 TKLYLPVVG----------------------------RS-SG--PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK 129 (189)
Q Consensus 81 ~miH~p~~~----------------------------~~-~G--~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 129 (189)
+.++-.... .+ .. +..+-+.....++.+.+.+.+.+++..+++.+++..
T Consensus 177 v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~ 256 (618)
T PRK10949 177 VDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFP 256 (618)
T ss_pred EEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 876542210 00 01 111212233467777888999999999999999854
Q ss_pred hhc----C---CCcccHHHHHHcCCceEEeCCch
Q 029701 130 DIQ----R---PKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 130 ~~~----~---~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
..+ . ..-+++++|++.||||+|....+
T Consensus 257 ~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de 290 (618)
T PRK10949 257 GAQGILEGLTKVGGDTAKYALDNKLVDALASSAE 290 (618)
T ss_pred HHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence 332 2 12369999999999999986543
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.37 E-value=5.6e-06 Score=68.93 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=80.2
Q ss_pred EEEcCCCCCCCccCCCccHH-----------H-HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 14 LYINSSGTQNEKKESVGAET-----------D-AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~-----------~-g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
|.|.+.|...+.|..+..+. . ...++..|..++.||.+.+.|.|.+.|..+.+++| .|++.++++|
T Consensus 55 vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f 132 (222)
T PRK05869 55 VILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKF 132 (222)
T ss_pred EEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEE
Confidence 45566675566555433221 1 13466778888999999999999999999999995 8999999887
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
-+-...++...+-..- ..+.++.| .....+++-...+++++||+++||||+|.+..
T Consensus 133 ~~pe~~~Gl~p~~g~~----------------~~l~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 133 GATEILAGLAPSGDGM----------------ARLTRAAG--PSRAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred cCchhccCCCCCccHH----------------HHHHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 6633332221111000 00111222 23335556677899999999999999999754
No 37
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.36 E-value=1.3e-05 Score=68.61 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=81.7
Q ss_pred EEEcCCCCCCCccCCCccHH----------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 14 LYINSSGTQNEKKESVGAET----------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~----------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.+
T Consensus 65 vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~ 142 (277)
T PRK08258 65 VVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD--LRLGTP 142 (277)
T ss_pred EEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEecC
Confidence 55566675566555443321 012466778889999999999999999999999995 899999
Q ss_pred CceEEEecccccccc---CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 78 NSSTKLYLPVVGRSS---GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 78 ~s~~miH~p~~~~~~---G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
+++|.+....++... |...-+ .+..| .....+++-....++++||+++||||+|.+.
T Consensus 143 ~a~f~~pe~~~Gl~p~~~g~~~~l------------------~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 143 SAKTAFLFTRVGLAGADMGACALL------------------PRIIG--QGRASELLYTGRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred CCEEeccccccCcCCCCchHHHHH------------------HHHhC--HHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence 998887555433221 111111 11112 2334455667789999999999999999875
Q ss_pred c
Q 029701 155 Q 155 (189)
Q Consensus 155 ~ 155 (189)
.
T Consensus 203 ~ 203 (277)
T PRK08258 203 E 203 (277)
T ss_pred H
Confidence 4
No 38
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.34 E-value=5.5e-06 Score=70.22 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=82.6
Q ss_pred EEEEcCCCCCCCccCCCccHH--------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccC
Q 029701 13 YLYINSSGTQNEKKESVGAET--------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~--------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
.|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.++
T Consensus 50 ~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~ 127 (257)
T PRK06495 50 VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCD--IIVASEN 127 (257)
T ss_pred EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCC--EEEecCC
Confidence 344567776666655443321 012356678888999999999999999999999995 8999999
Q ss_pred ceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 79 SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 79 s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
++|.+-....+.. |...- +.+..| .....+++-....++++||+++||||+|.++.
T Consensus 128 a~f~~pe~~~Gl~-~~~~~------------------l~~~~g--~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 128 AVFGLPEIDVGLA-GGGKH------------------AMRLFG--HSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred CEeeChhhccCcc-ccHHH------------------HHHHhC--HHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 9887644332322 21100 112223 34456667778899999999999999998754
No 39
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.28 E-value=4.4e-06 Score=69.28 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=89.9
Q ss_pred EEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccC
Q 029701 14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG 93 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G 93 (189)
+.+|||| |++..++++--.|+..+..+-.-...+|+|+..++|++| ..|++.+.+.+.+||+..+ .+
T Consensus 109 v~lnSpG---------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG--vrRvve~~ayiGVHq~~~~--g~ 175 (245)
T COG3904 109 VTLNSPG---------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG--VRRVVEDFAYIGVHQITTT--GR 175 (245)
T ss_pred EEecCCC---------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc--eeeeecccceeeeeecccc--CC
Confidence 6789999 999999999999999888877777889999999999999 4899999999999999732 22
Q ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhc----CCCcccHHHHHHcCCceE
Q 029701 94 P--VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ----RPKYMQAKEAIVYGLADK 150 (189)
Q Consensus 94 ~--~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~----~~~~lsa~EA~e~GliD~ 150 (189)
. .... ++.......-.=...|...-|..+.-+..+.+ +=++++.+|-.+|.|+.+
T Consensus 176 ~~r~~~~--~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 176 RERIVNG--KAKSANQKVTARLAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred ccccCcH--hhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhhhccccc
Confidence 1 1111 12222211111133577778888877766654 348899999999988653
No 40
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.28 E-value=4.7e-06 Score=69.71 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=82.2
Q ss_pred EEEEcCCCCCCCccCCCccH------------HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 13 YLYINSSGTQNEKKESVGAE------------TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v------------~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
.|.|.+.|...+.|..+..+ .....++..|..++.||.+.+.|.|.+.|+.+++++ +.|++.+++.
T Consensus 45 vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~ 122 (245)
T PF00378_consen 45 VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAK 122 (245)
T ss_dssp EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTE
T ss_pred EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccccccccccc--ceEEeecccc
Confidence 55667777666665544333 344667888889999999999999999999999999 5899999998
Q ss_pred EEEeccccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 81 TKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 81 ~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
|.+-...++...+- ...+ +.++.| .....+++-.+..++++||+++||||+|+++.+
T Consensus 123 f~~pe~~~G~~p~~g~~~~-----------------l~r~~g--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 123 FGFPEVRLGIFPGAGGTFR-----------------LPRLIG--PSRARELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp EETGGGGGTSSSTSTHHHH-----------------HHHHHH--HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred eeeeecccCcccccccccc-----------------cceeee--cccccccccccccchhHHHHhhcceeEEcCchh
Confidence 55533222222211 1110 111111 112234444577899999999999999999875
No 41
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.28 E-value=1.9e-05 Score=66.88 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=81.8
Q ss_pred EEEEcCCCCCCCccCCCccHH---------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 13 YLYINSSGTQNEKKESVGAET---------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~---------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
.|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|..|++++| .|++.+
T Consensus 50 ~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~ 127 (260)
T PRK07511 50 AVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACD--LLVAAR 127 (260)
T ss_pred EEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeC
Confidence 355567775566555443221 113456677888999999999999999999999994 899999
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+++|-+.....|...+-..- . .+..+.| .....+++-....|+++||+++||||+|.+..
T Consensus 128 ~a~f~~pe~~~Gl~p~~g~~------~----------~l~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 128 DAKFVMAYVKVGLTPDGGGS------W----------FLARALP--RQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred CCEEeccccccCcCCCchHH------H----------HHHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 99887643332222111100 0 0111112 33345667778899999999999999999764
No 42
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=8.3e-06 Score=69.55 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
+++.|..++.||.+.+.|.|.+.|.-|++++| .|++.++++|.+..+..|... |...-+.
T Consensus 100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~---------------- 161 (272)
T PRK06210 100 RYHFLTALRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFARRGLIAEHGISWILP---------------- 161 (272)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHHhcCCCCCCchhhhhH----------------
Confidence 45678889999999999999999999999995 899999999987555433221 1111111
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
... ......+++-.+..++++||+++||||+|.++.
T Consensus 162 --~~i--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 162 --RLV--GHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred --hhh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 111 234456666778889999999999999998764
No 43
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.24 E-value=2.5e-05 Score=66.12 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred EEEcCCCCCCCccCCCccHH----------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 14 LYINSSGTQNEKKESVGAET----------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~----------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+
T Consensus 50 vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~ 127 (255)
T PRK09674 50 CVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCD--IVIAGENARFGL 127 (255)
T ss_pred EEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEecCCCEEeC
Confidence 45566665566555443221 113456778889999999999999999999999995 899999998876
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
-...+|...+-. -. ..+.+..| ...-.+++-....|+++||+++||||+|.++.
T Consensus 128 pe~~~Gl~p~~g-~~---------------~~l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 128 PEITLGIMPGAG-GT---------------QRLIRSVG--KSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred chhhcCCCCCcc-HH---------------HHHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 443322211110 00 01122223 23335566677889999999999999998765
No 44
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=2.2e-05 Score=66.40 Aligned_cols=122 Identities=9% Similarity=0.018 Sum_probs=79.4
Q ss_pred EEEcCCCCCCCccCCCccHHH------------HHH-HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 14 LYINSSGTQNEKKESVGAETD------------AYA-IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~~------------g~~-Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|.|-+.|...+.|..+..+.. ... +...|..++.||.+.+.|.|.+.|..+++++| .|++.+++.
T Consensus 47 vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~ 124 (255)
T PRK06563 47 AVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAAD--IVVAADNTR 124 (255)
T ss_pred EEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCC--EEEecCCCE
Confidence 556677766666665533211 111 12346778999999999999999999999994 899999998
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
|.+....+|...+-.... .+....| ...-.+++-.+..|+++||+++||||+|.++.
T Consensus 125 f~~pe~~~Gl~p~~g~~~----------------~l~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 125 FAQLEVQRGILPFGGATL----------------RFPQAAG--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred EeChhhhcCCCCCccHHH----------------HHHHHhh--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 876444333221111110 0111112 22234556667789999999999999999765
No 45
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=2.4e-05 Score=66.45 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|++++| .|++.++++|.+-...+|...+-..- . .+.
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~p~~g~~-~---------------~l~ 156 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVKLGLIPGDGGA-W---------------LLP 156 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEcccccccCcCCCcchh-h---------------hHH
Confidence 45677788999999999999999999999994 89999999887644332222111000 0 011
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+..| .....+++-.+..|+++||+++||||+|.+..
T Consensus 157 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 157 RIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 1112 12234455567889999999999999998754
No 46
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.22 E-value=3.4e-05 Score=65.39 Aligned_cols=122 Identities=15% Similarity=0.102 Sum_probs=79.0
Q ss_pred EEEcCCCCCCCccCCCccHH------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 14 LYINSSGTQNEKKESVGAET------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
|.|-+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.++++|
T Consensus 48 vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f 125 (255)
T PRK08150 48 VVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAH--IRVADESTYF 125 (255)
T ss_pred EEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCC--EEEEeCCCEE
Confidence 44556665555554443221 123456677888999999999999999999999994 8999999987
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+=...+|...+-..- . .+.+..| .....+++-....|+++||+++||||+|.++.
T Consensus 126 ~~pe~~~Gl~p~~g~~-~---------------~l~~~iG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 126 ALPEGQRGIFVGGGGS-V---------------RVPRLIG--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred eccccccCCCCCccHH-H---------------HHHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 6632222211111000 0 0111222 22334556667889999999999999999865
No 47
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=3.6e-05 Score=65.27 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred EEEEcCCC-CCCCccCCCccHH------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCc
Q 029701 13 YLYINSSG-TQNEKKESVGAET------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 13 ~l~INSpG-~~~~~~~~~G~v~------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s 79 (189)
.|.|.+.| ...+.|..+..+. ....+++.|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++
T Consensus 54 ~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a 131 (256)
T PRK06143 54 VLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACD--LRIAAHDA 131 (256)
T ss_pred EEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCC--EEEecCCC
Confidence 35556666 3566665544321 113456777889999999999999999999999995 89999999
Q ss_pred eEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 80 STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 80 ~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+|.+ |.. ..|-. ... .. ..+.+..| .....+++-....++++||+++||||+|.++.
T Consensus 132 ~f~~--pe~--~~G~p-~~~--~~----------~~l~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 132 QFGM--PEV--RVGIP-SVI--HA----------ALLPRLIG--WARTRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred EEeC--Ccc--ccCCC-Ccc--HH----------HHHHHhcC--HHHHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 8876 432 11211 110 00 01223333 33446666778899999999999999999764
No 48
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=2.5e-05 Score=65.98 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=79.2
Q ss_pred EEEcCCCCCCCccCCCccH-----------HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEE
Q 029701 14 LYINSSGTQNEKKESVGAE-----------TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v-----------~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~m 82 (189)
|.|.+.|...+.|..+..+ .....+++.|..++.||.+.+.|.|.+.|.-+++++| .|++.++++|.
T Consensus 53 vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD--~ria~~~a~f~ 130 (259)
T PRK06688 53 VVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACD--LVYASESAKFS 130 (259)
T ss_pred EEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCC--EEEecCCCEec
Confidence 4456666555554433221 2234577788889999999999999999999999995 89999999887
Q ss_pred Eecccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 83 LYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 83 iH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.....|... |...- +.+..| .....+++-.+..++++||+++||||+|.++.
T Consensus 131 ~pe~~~G~~p~~g~~~~------------------l~~~~G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 131 LPFAKLGLCPDAGGSAL------------------LPRLIG--RARAAEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred CchhhcCCCCCcchhhH------------------HHHHhh--HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 7544333221 11111 111111 12223445556779999999999999998753
No 49
>PLN02888 enoyl-CoA hydratase
Probab=98.18 E-value=4.7e-05 Score=64.96 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=79.2
Q ss_pred EEEcCCCCCCCccCCCccHH---------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEe
Q 029701 14 LYINSSGTQNEKKESVGAET---------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~---------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH 84 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|..|++++| .|++.+++.|.+=
T Consensus 58 vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~p 135 (265)
T PLN02888 58 IILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACD--ILVASRGAKFIDT 135 (265)
T ss_pred EEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCC--EEEecCCCEecCc
Confidence 55567775666655443221 112455667888999999999999999999999994 8999999988652
Q ss_pred cccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 85 LPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 85 ~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
....|... |...- +.+..| .....+++-....|+++||+++||||+|.++.
T Consensus 136 e~~~Gl~p~~g~~~~------------------l~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 136 HAKFGIFPSWGLSQK------------------LSRIIG--ANRAREVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred cccccCCCCccHhhH------------------HHHHhC--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 22222211 11111 111222 22334455567789999999999999999764
No 50
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.18 E-value=2.3e-05 Score=67.10 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.+++.|..++.||.+.+.|.|.+.|.-|.+++| -|++.++++|.+-...++.. .+... .. .+
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~----p~~g~----~~--------~l 163 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKEVDLAIT----ADLGT----LQ--------RL 163 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHHHhhCCC----CCccH----HH--------HH
Confidence 356678889999999999999999999999995 89999999887633322211 11100 00 01
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
..+.| .....+++-.+..|+++||+++||||+|.++
T Consensus 164 ~~~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 164 PSIVG--YGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 11122 2233555666789999999999999999975
No 51
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.18 E-value=5.7e-05 Score=63.79 Aligned_cols=122 Identities=13% Similarity=0.015 Sum_probs=79.5
Q ss_pred EEEcCCCCCCCccCCCccHH-----------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEE
Q 029701 14 LYINSSGTQNEKKESVGAET-----------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~-----------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~m 82 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.++++|.
T Consensus 54 vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD--~ria~~~a~f~ 131 (251)
T PRK06023 54 HVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCD--LTFASPRSLFR 131 (251)
T ss_pred EEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCC--EEEEeCCCEec
Confidence 34456665555554442221 123466778889999999999999999999999994 89999999988
Q ss_pred EeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 83 LYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 83 iH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+-...+|..-+-..- . .+.+..| .....+++-.+..++++||+++||||+|.+..
T Consensus 132 ~pe~~~Gl~p~~g~~------~----------~l~~~~g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 132 TPFVDLALVPEAGSS------L----------LAPRLMG--HQRAFALLALGEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred CcccccCCCCCchHH------H----------HHHHHHh--HHHHHHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence 644332321111100 0 0111112 22334455567789999999999999998754
No 52
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.17 E-value=5.1e-05 Score=64.25 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=79.6
Q ss_pred EEEcCCCCCCCccCCCccHH----------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 14 LYINSSGTQNEKKESVGAET----------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~----------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
|.|-+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-+.+++| .|++.+++.|.+
T Consensus 52 vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~ 129 (257)
T PRK05862 52 IVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQ 129 (257)
T ss_pred EEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeC
Confidence 44456665666655543221 123456677888999999999999999999999995 899999998776
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
=...+|...+-.. . ..+.+..| ...-.+++-.+..++++||+++||||+|.++.
T Consensus 130 pe~~~Gl~p~~g~-~---------------~~l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 130 PEIKLGVLPGMGG-S---------------QRLTRAVG--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred chhccCcCCCccH-H---------------HHHHHHhC--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence 3222222111100 0 01222222 22234556667789999999999999998764
No 53
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.16 E-value=2.5e-05 Score=66.62 Aligned_cols=121 Identities=10% Similarity=0.126 Sum_probs=80.3
Q ss_pred EEEcCCCCCCCccCCCccHH-------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 14 LYINSSGTQNEKKESVGAET-------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~-------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-+++++| .|++.++++
T Consensus 59 vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~ 136 (266)
T PRK08139 59 VVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCD--LAVAADTAR 136 (266)
T ss_pred EEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCC--EEEEeCCCE
Confidence 44566665566555543221 012355667888999999999999999999999994 899999998
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
|.+-...+|...+-. - . . +.++.| ...-.+++-.+..++++||+++||||+|.++.
T Consensus 137 f~~pe~~~Gl~p~~~-~----~-~-----------l~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 137 FAVPGVNIGLFCSTP-M----V-A-----------LSRNVP--RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred EeCcccCcCCCCCcc-H----H-H-----------HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 766333322221111 0 0 0 112223 33345666678889999999999999999764
No 54
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.16 E-value=2.7e-05 Score=65.98 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=80.3
Q ss_pred EEEcCCC-CCCCccCCCccHH------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 14 LYINSSG-TQNEKKESVGAET------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 14 l~INSpG-~~~~~~~~~G~v~------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|.|.+.| ...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.
T Consensus 52 vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~va~~~a~ 129 (260)
T PRK05809 52 VILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACD--IRIASEKAK 129 (260)
T ss_pred EEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCC--EEEeeCCCE
Confidence 4556666 4566555543221 123466778889999999999999999999999995 899999998
Q ss_pred EEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
|.+-...++.. .+..- . ..+.+..| .....+++-.+..++++||+++||||+|.+..
T Consensus 130 f~~pe~~~Gl~----p~~g~----~--------~~l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 130 FGQPEVGLGIT----PGFGG----T--------QRLARIVG--PGKAKELIYTGDMINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred EeCcccccCCC----CCccH----H--------HHHHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCcccChH
Confidence 87643332221 11100 0 01112222 22334556667789999999999999998754
No 55
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=3e-05 Score=65.93 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-+.+++| .|++.+++.|.+..+.++...+-..- .+ +
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e~~lG~~p~~g~~------~~----------l 155 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFRRIGLVPDGGST------WL----------L 155 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEecCCCEEechHhhcCCCCCccHH------HH----------H
Confidence 366778889999999999999999999999995 89999999987655543322111100 00 1
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-....|+++||+++||||+|.++.
T Consensus 156 ~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 156 PRLVG--KARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred HHHhH--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 11111 22234555567789999999999999999865
No 56
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=5.1e-05 Score=64.61 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=81.3
Q ss_pred EEEEcCCCCCCCccCCCccHH----------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEE
Q 029701 13 YLYINSSGTQNEKKESVGAET----------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~----------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~m 82 (189)
.|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.
T Consensus 51 ~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD--~~ia~~~a~f~ 128 (258)
T PRK06190 51 VVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACD--ILIASERARFA 128 (258)
T ss_pred EEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCC--EEEEeCCCEEE
Confidence 345566665556555443221 123567778899999999999999999999999995 89999999886
Q ss_pred EeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 83 LYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 83 iH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+-...+|...+-..- ..+.+..| .....+++-....++++||+++||||+|.++.
T Consensus 129 ~pe~~~Gl~p~~g~~----------------~~l~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 129 DTHARVGILPGWGLS----------------VRLPQKVG--IGRARRMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred CcccccCcCCCccHH----------------HHHHHHhC--HHHHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 522222211111000 01112223 34445666678899999999999999998754
No 57
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=3.1e-05 Score=65.71 Aligned_cols=122 Identities=13% Similarity=0.145 Sum_probs=80.5
Q ss_pred EEEEcCCCCCCCccCCCccHH---------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 13 YLYINSSGTQNEKKESVGAET---------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~---------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
.|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|+-|++++| -|++.+
T Consensus 51 ~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~ 128 (262)
T PRK05995 51 AVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAAD 128 (262)
T ss_pred EEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeC
Confidence 355677776666655443211 112356667788999999999999999999999995 899999
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+++|.+-....+. ..+.. .. .+.++.| .....+++-....++++||+++||||+|.+..
T Consensus 129 ~a~f~~pe~~~Gl----~p~~g--~~-----------~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 129 HAVFCLSEVRLGL----IPATI--SP-----------YVIRAMG--ERAARRYFLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred CCEEeCccccccc----Cccch--HH-----------HHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence 9988763332221 11111 00 0112222 33345566677889999999999999999643
No 58
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.13 E-value=2.3e-05 Score=65.25 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=78.2
Q ss_pred EEEcCCCCCCCccCCCcc-----------HHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccC-ceE
Q 029701 14 LYINSSGTQNEKKESVGA-----------ETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SST 81 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~-----------v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~-s~~ 81 (189)
|.|.+.|...+.|..+.. +.....++..|..++.||.+.+.|.|.+.|+.|++++| .|++.++ ++|
T Consensus 48 vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f 125 (229)
T PRK06213 48 VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKI 125 (229)
T ss_pred EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEE
Confidence 455666655555443321 12234556677788999999999999999999999995 8999998 877
Q ss_pred EEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+-....+.. ..... . . .+..+.| .....+++-.+..++++||+++||||+|.++.
T Consensus 126 ~~pe~~~Gl~---~~~~~--~-~----------~l~~~~g--~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 126 GLNEVAIGMT---MPHAA--I-E----------LARDRLT--PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred ECchhhhCCc---CChHH--H-H----------HHHHHcC--HHHHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 6632221211 11100 0 0 0111222 12334456678899999999999999998654
No 59
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.13 E-value=3.4e-05 Score=66.20 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=79.9
Q ss_pred EEEEcCCCCCCCccCCCccHH----------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecc
Q 029701 13 YLYINSSGTQNEKKESVGAET----------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ 76 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~----------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~ 76 (189)
.|.|.+.|...+.|..+.... ....++..|..++.||.+.+.|.|.+.|.-|++++| .|++.
T Consensus 55 ~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD--~~ia~ 132 (275)
T PRK09120 55 VLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACD--LAIAA 132 (275)
T ss_pred EEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCC--EEEEe
Confidence 345567776666555543221 012345667788999999999999999999999995 89999
Q ss_pred cCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 77 PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 77 p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
++++|.+ |... .|-..+.... ..+....| ...-.+++-....|+++||+++||||+|.++.
T Consensus 133 ~~a~f~~--pe~~--~Gl~p~~g~~------------~~l~~~iG--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 133 DEAQFGL--SEIN--WGIPPGGGVS------------KAMADTVG--HRDALYYIMTGETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred CCcEecC--Cccc--cCCCCCcchH------------HHHHHHcC--HHHHHHHHhcCCccCHHHHHHcCCcceecCHH
Confidence 9998876 4421 1111110000 01122223 23335556667889999999999999998764
No 60
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.12 E-value=7.4e-05 Score=63.11 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=81.8
Q ss_pred EEEEcCCCCCCCccCCCccHHH---------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 13 YLYINSSGTQNEKKESVGAETD---------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~~---------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
.|.|-+.|..++.|..+..+.. ...++..|..++.||.+.+.|.|.+.|..+.+++| .|++.+++.|.+
T Consensus 52 ~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~ 129 (249)
T PRK07110 52 VVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYAD--IVVLSRESVYTA 129 (249)
T ss_pred EEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCC--EEEEeCCCEecC
Confidence 3445566755555544332211 13577778899999999999999999999999994 899999998765
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
....++...+-..- . .+.++.| .....+++-...-|+++||+++||||+|.++.
T Consensus 130 pe~~~Gl~p~~g~~------~----------~l~~~~g--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 130 NFMKYGFTPGMGAT------A----------ILPEKLG--LALGQEMLLTARYYRGAELKKRGVPFPVLPRA 183 (249)
T ss_pred chhccCCCCCchHH------H----------HHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCeEEeChH
Confidence 33222221111100 0 0111222 34456677778899999999999999999754
No 61
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=8.1e-05 Score=63.22 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
.+++.|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+=...+|... |...-
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~~----------------- 149 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHAD--IIVAGESASFGQPEIKVGLMPGAGGTQR----------------- 149 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCC--EEEecCCCEeeCcccccccCCCCcHHHH-----------------
Confidence 456677788999999999999999999999994 899999998766332222211 11111
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
+....| ...-.+++-.+..|+++||+++||||+|.++.+
T Consensus 150 -l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 150 -LVRAVG--KFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQ 188 (261)
T ss_pred -HHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 112222 233445566677899999999999999987653
No 62
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=5.4e-05 Score=63.98 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=80.7
Q ss_pred EEEEcCCCCCCCccCCCccHH------H-------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCc
Q 029701 13 YLYINSSGTQNEKKESVGAET------D-------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~------~-------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s 79 (189)
.|.|.+.|...+.|..+..+. . ...++..|..++.||.+.+.|.|.+.|.-|.+++| -|++.+++
T Consensus 48 ~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a 125 (249)
T PRK07938 48 VVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDA 125 (249)
T ss_pred EEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCC
Confidence 355567775666655543321 0 12355667788999999999999999999999995 89999999
Q ss_pred eEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 80 STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 80 ~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.|.+=...++.. |... .+....| ...-.+++-....++++||+++||||+|.++.
T Consensus 126 ~f~~pe~~~G~~-g~~~------------------~l~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 126 TFGLPEVDRGAL-GAAT------------------HLQRLVP--QHLMRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred EeeCccceecCc-hhHH------------------HHHHhcC--HHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 876622222211 1110 1122223 33345566678899999999999999999754
No 63
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=8.9e-05 Score=62.86 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.++++|.+-...+|..-+...- ..+
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~----------------~~l 147 (258)
T PRK09076 86 EAFEALSAFRGVSIAAINGYAMGGGLECALACD--IRIAEEQAQMALPEASVGLLPCAGGT----------------QNL 147 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEecCCCEeeCcccccCCCCCccHH----------------HHH
Confidence 356677888999999999999999999999995 89999999887633322222111100 001
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
....| .....+++-....|+++||+++||||+|.++.
T Consensus 148 ~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 148 PWLVG--EGWAKRMILCGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence 11122 22234455567789999999999999999865
No 64
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=2.3e-05 Score=66.38 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+.....+...+-.. . ..+.
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~--------~--------~~l~ 155 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLVPDMAG--------T--------VSLR 155 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhCC--EEEecCCCEeecchhccCCCCCchH--------H--------HHHH
Confidence 34456788999999999999999999999995 8999999988775443332211100 0 0111
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
...| .....+++-.+..|+++||+++||||+|.++
T Consensus 156 ~~~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 156 GLVR--KDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHhC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 1112 2334566667888999999999999999864
No 65
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=4.3e-05 Score=64.59 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=69.4
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 36 ~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
..++..|..++.||.+.+.|.|.+.|.-+++++| .|++.++++|.+-...++...+-..- . .
T Consensus 84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~-~----~----------- 145 (257)
T PRK07658 84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSCH--IRFATESAKLGLPELNLGLIPGFAGT-Q----R----------- 145 (257)
T ss_pred HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCC--EEEecCCCcccCcccccCCCCCCcHH-H----H-----------
Confidence 3466778889999999999999999999999994 89999999876533222222111100 0 0
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+..| ...-.+++-.+..++++||+++||||+|.++.
T Consensus 146 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 146 LPRYVG--KAKALEMMLTSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred HHHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence 111112 22334566678889999999999999998754
No 66
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.08 E-value=4.5e-05 Score=64.52 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=80.9
Q ss_pred EEEEcCCCCCCCccCCCccHH----------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecc
Q 029701 13 YLYINSSGTQNEKKESVGAET----------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ 76 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~----------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~ 76 (189)
.|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|..|++++| .|++.
T Consensus 49 ~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~ 126 (255)
T PRK07260 49 FLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIAS 126 (255)
T ss_pred EEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEe
Confidence 344577776666665543221 112355677789999999999999999999999995 89999
Q ss_pred cCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 77 PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 77 p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+++.|.+ |... .|-..+..-.. .+.+.-| .....+++-.+..++++||+++||||+|.+..
T Consensus 127 ~~a~f~~--pe~~--~Gl~p~~g~~~------------~l~~~vg--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 127 TKTKFIQ--AFVG--VGLAPDAGGLF------------LLTRAIG--LNRATHLAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred CCCEEec--hHhh--cCCCCCCchhh------------hhHHhhC--HHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence 9998775 4321 11111100000 0111122 23346667778899999999999999998754
No 67
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.07 E-value=3.3e-05 Score=65.94 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.++++|.+-...+|...+... . ..+
T Consensus 100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~-~---------------~~l 161 (272)
T PRK06142 100 AAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVDLGMVADVGS-L---------------QRL 161 (272)
T ss_pred HHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhhhCCCCCchH-H---------------HHH
Confidence 456667889999999999999999999999995 7999999987664433332211110 0 001
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-...-++++||+++||||+|.++.
T Consensus 162 ~~~~G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 198 (272)
T PRK06142 162 PRIIG--DGHLRELALTGRDIDAAEAEKIGLVNRVYDDA 198 (272)
T ss_pred HHHhC--HHHHHHHHHhCCCcCHHHHHHcCCccEecCCH
Confidence 11122 22334555667789999999999999999863
No 68
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.07 E-value=4.9e-05 Score=64.58 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=81.6
Q ss_pred EEEEcCCCCCCCccCCCccHHH---------------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 13 YLYINSSGTQNEKKESVGAETD---------------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~~---------------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
.|.|.+.|...+.|..+..+.. ...+++.|+.++.||.+.+.|.|.+.|.-|++++| .|++.+
T Consensus 52 ~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~ 129 (262)
T PRK07468 52 VVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVS 129 (262)
T ss_pred EEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeC
Confidence 3555777766666655432210 12356778899999999999999999999999995 899999
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+++|.+-...++.. .+.- ... +..+.| .....+++-...-++++||+++||||+|.+..
T Consensus 130 ~a~f~~pe~~~Gl~----p~~g--~~~-----------~~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 130 GARFGLTETRLGLI----PATI--SPY-----------VVARMG--EANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred CCEEeCchhccCCC----cccc--hhh-----------HHhhcc--HHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 99776533222211 1110 000 111222 33445677778899999999999999998754
No 69
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.07 E-value=3.5e-05 Score=65.20 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=81.6
Q ss_pred EEcCCCCCCCccCCCccHH-------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceE
Q 029701 15 YINSSGTQNEKKESVGAET-------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 15 ~INSpG~~~~~~~~~G~v~-------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~ 81 (189)
.|-+.|-..+.|..++.+. ....+...|..++.||.+.+.|.|.+.|+-|.+++| -|++.++++|
T Consensus 54 vltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D--~ria~~~a~f 131 (257)
T COG1024 54 VLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACD--IRIAAEDAKF 131 (257)
T ss_pred EEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCC--eEEecCCcEe
Confidence 3455555566665554422 122367788999999999999999999999999995 8999999999
Q ss_pred EEeccccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 82 KLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+....+|...|. ...+ + .+..| ...-.+++-.+..++++||+++||||+|.+..
T Consensus 132 ~~pe~~iGl~Pg~g~~~~------l-----------~r~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 132 GLPEVNLGLLPGDGGTQR------L-----------PRLLG--RGRAKELLLTGEPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred cCcccccccCCCCcHHHH------H-----------HHhcC--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence 8865544433321 1110 1 11111 11122256678889999999999999998864
No 70
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.07 E-value=9.7e-05 Score=62.64 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=79.9
Q ss_pred EEEEcCCCC-CCCccCCCccHH------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCc
Q 029701 13 YLYINSSGT-QNEKKESVGAET------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 13 ~l~INSpG~-~~~~~~~~G~v~------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s 79 (189)
.|.|.+.|. ..+.|..+..+. ....+++.|..++.||.+.+.|.|.+.|+-|.+++| .|++.+++
T Consensus 51 ~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a 128 (260)
T PRK07657 51 VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACD--FRIAAESA 128 (260)
T ss_pred EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCC--EEEeeCCC
Confidence 345566664 566655543321 113456777888999999999999999999999994 89999999
Q ss_pred eEEEecccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 80 STKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 80 ~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.|.+-...+|... |...-+. +..| .....+++-....|+++||+++||||+|.++.
T Consensus 129 ~f~~pe~~~G~~p~~g~~~~l~------------------~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 129 SLGLTETTLAIIPGAGGTQRLP------------------RLIG--VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred EEcCchhccCcCCCccHHHHHH------------------HHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence 8776433323221 1111111 1112 22334555567779999999999999998764
No 71
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.06 E-value=8e-05 Score=62.72 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=79.7
Q ss_pred EEEEcCCCCCCCccCCCcc-H------HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEec
Q 029701 13 YLYINSSGTQNEKKESVGA-E------TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~-v------~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~ 85 (189)
.|.|.+.|...+.|..+.. . .....++..|..++.||.+.+.|.|.+.|.-+.+++| -|++.++++|.+
T Consensus 46 ~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~-- 121 (243)
T PRK07854 46 AIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACD--LRVVAPEAYFQF-- 121 (243)
T ss_pred EEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCC--EEEEcCCCEEec--
Confidence 4555677755665555432 1 1123466778888999999999999999999999995 899999998765
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeC
Q 029701 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153 (189)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~ 153 (189)
|... .|-..+.. ....+.+..| .....+++-.+..|+++||+++||||+|.+
T Consensus 122 pe~~--~G~~p~~g------------~~~~l~~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 122 PVAK--YGIALDNW------------TIRRLSSLVG--GGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred cccc--cccCCCcc------------HHHHHHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 4421 12111100 0011222223 233355666788999999999999999954
No 72
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.06 E-value=8e-05 Score=63.06 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=80.5
Q ss_pred EEEcCCCCCCCccCCCccHH-----H----HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEe
Q 029701 14 LYINSSGTQNEKKESVGAET-----D----AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~-----~----g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH 84 (189)
|.|-+.|...+.|..+..+. . ...++..|..++.||.+.+.|.|.+.|.-|.+++| -|++.++++|.+
T Consensus 48 vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~- 124 (251)
T TIGR03189 48 VLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQ- 124 (251)
T ss_pred EEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeC-
Confidence 55566676666655543311 1 12355667888999999999999999999999995 899999998776
Q ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
|.. . .|-..... . . .+.+..| .....+++-...-|+++||+++||||+|.++.
T Consensus 125 -pe~-~-~Gl~p~~~--~-~----------~l~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 125 -PEI-V-LGVFAPAA--S-C----------LLPERMG--RVAAEDLLYSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred -chh-h-cCCCCCch--H-H----------HHHHHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCcH
Confidence 442 1 12111100 0 0 1222333 33445666677789999999999999998754
No 73
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.05 E-value=6.8e-05 Score=63.60 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=66.3
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029701 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121 (189)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg 121 (189)
+..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+-...+|...+.. -.. .+.+..|
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g-~~~---------------~l~~~vg 151 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALACD--LIVAAENATFALPEPRVGLAALAG-GLH---------------RLPRQIG 151 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccCCCCCch-HHH---------------HHHHHcC
Confidence 3467899999999999999999999995 899999998876443333221111 000 1222233
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 122 ~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
...-.+++-....++++||+++||||+|.++.
T Consensus 152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 152 --LKRAMGMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 33344566678899999999999999999764
No 74
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.04 E-value=6.5e-05 Score=64.30 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~ 87 (189)
.-||.-.+||||.... .-|.-|...........+-..+.|+.++++|.|.|.|++.++.+ +..+|.|++.+.+-.|.
T Consensus 98 ~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe 175 (256)
T PRK12319 98 GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPE 175 (256)
T ss_pred CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHH
Confidence 4689999999994321 00011222222233333345579999999999999999888777 57899999988876664
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+ +..+ .++. ....++..+.+ -+||.++.+.|+||+|++..
T Consensus 176 -~-----~a~i--l~~~----------------~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 176 -G-----FASI--LWKD----------------GSRATEAAELM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred -H-----HHHH--HhcC----------------cccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence 1 1111 0100 01222323333 35999999999999999865
No 75
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.04 E-value=7.7e-05 Score=63.35 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 36 ~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
..++..|..++.||.+.+.|.|.+.|.-+++++| .|++.+++.|.+ |... .|-..+..-.. .
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~--pe~~--~G~~p~~g~~~-~----------- 145 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAAD--FIVCADNASFAL--PEAK--LGIVPDSGGVL-R----------- 145 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeC--cccc--cCcCCCccHHH-H-----------
Confidence 3456678888999999999999999999999995 899999998765 4421 12111110000 0
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.++.| .....+++-.+..++++||+++||||+|.+..
T Consensus 146 l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 146 LPKRLP--PAIANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHHhC--HHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 111112 23344555567889999999999999998764
No 76
>PLN02921 naphthoate synthase
Probab=98.01 E-value=8.4e-05 Score=65.57 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=70.6
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|..|.+++| -|++.+++.|.+..+.+|...+...-. .| .
T Consensus 153 l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD--~riA~~~A~f~~pe~~~Gl~p~~gg~~-----~L-----------~ 214 (327)
T PLN02921 153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVCD--LTIAADNAVFGQTGPKVGSFDAGYGSS-----IM-----------A 214 (327)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccCCCCCccHHH-----HH-----------H
Confidence 45677888999999999999999999999994 899999998887555543221100000 01 1
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+..| .....+++-....|+++||+++||||+|.+..
T Consensus 215 rliG--~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 215 RLVG--QKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred HHhC--HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 1112 33345566678899999999999999999764
No 77
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.00 E-value=3.3e-05 Score=65.39 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
++..|..++.||.+.+.|.|.+.|..|++++| .|++.+++.|.+-...++... |...-
T Consensus 85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~lG~~p~~g~~~~------------------ 144 (256)
T TIGR02280 85 LVRRLRALPLPVVCAVNGVAAGAGANLALACD--IVLAAESARFIQAFAKIGLIPDSGGTWS------------------ 144 (256)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEEeChhhhcCCCCCccHHHH------------------
Confidence 45567888999999999999999999999994 899999998875333222111 11111
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+....| ...-.+++-....|+++||+++||||+|.++.
T Consensus 145 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 145 LPRLVG--RARAMGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred HHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 111112 12234455667789999999999999998765
No 78
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.00 E-value=0.00016 Score=62.57 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=67.9
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+ |.. . .|-. ... .+. + .
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~--pe~-~-lGl~-~~~----~~~-l--------~ 169 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSD--PVV-R-MGIP-GVE----YFA-H--------P 169 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecC--ccc-c-cCcC-cch----HHH-H--------H
Confidence 44567888999999999999999999999995 899999998875 442 1 1211 110 000 0 0
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
...| .....+++-.+..++++||+++||||+|.++.
T Consensus 170 ~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 170 WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 1112 33445566677899999999999999999764
No 79
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.00 E-value=8e-05 Score=63.57 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
+++.|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.+....++... |...-
T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~LalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------ 157 (269)
T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALACD--IRIAAEDSRFGIPAARLGLGYGYDGVKN------------------ 157 (269)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEeeCCCEeeCchhhhCCCCCccHHHH------------------
Confidence 45667888999999999999999999999995 899999998887544433221 11111
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+..| .....+++-.+..++++||+++||||+|.+..
T Consensus 158 l~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 158 LVDLVG--PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred HHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 111112 23445666678889999999999999999754
No 80
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.00 E-value=7e-05 Score=64.16 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|.+-...+|... .+... ...+
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p---~~~g~------------~~~l 162 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAGINNGLTA---SELGL------------SYLL 162 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecCcccccCCCC---CCcch------------heeh
Confidence 355667788999999999999999999999995 899999998875333222111 01000 0001
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-....++++||+++||||+|.++.
T Consensus 163 ~~~vG--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 163 PRAIG--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HhhhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 22233 23345555566678999999999999998764
No 81
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.99 E-value=5.2e-05 Score=64.49 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|.+-....+...+.. -.. .+
T Consensus 87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~~~~g-~~~---------------~l 148 (261)
T PRK11423 87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD--LIIAASTSTFAMTPANLGVPYNLS-GIL---------------NF 148 (261)
T ss_pred HHHHHHHhCCCCEEEEEecEEechHHHHHHhCC--EEEecCCCEecCchhhcCCCCCcc-HHH---------------HH
Confidence 456778889999999999999999999999994 899999998765333222211110 000 11
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.++.| ...-.+++-....++++||+++||||+|.++.
T Consensus 149 ~~~vg--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 149 TNDAG--FHIVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred HHHhH--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 11222 23345555667889999999999999998754
No 82
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.99 E-value=0.00013 Score=62.19 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
.++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+=...+|... |...-+.
T Consensus 97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~--------------- 159 (268)
T PRK07327 97 DLVYNVINCDKPIVSAIHGPAVGAGLVAALLAD--ISIAAKDARIIDGHTRLGVAAGDHAAIVWP--------------- 159 (268)
T ss_pred HHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCC--EEEecCCCEEeCcccccCCCCCcchhhHHH---------------
Confidence 345566788999999999999999999999994 899999998765222212111 1111111
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
...| ...-.+++-....|+++||+++||||+|.++.
T Consensus 160 ---~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 160 ---LLCG--MAKAKYYLLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred ---HHhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 0111 12233355567789999999999999998754
No 83
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.98 E-value=0.00013 Score=63.33 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=64.3
Q ss_pred hcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 029701 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 123 (189)
Q Consensus 44 ~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~ 123 (189)
.++.||.+.+.|.|.+.|+-|.+++| .|++.+++.|.+ |.. ..|-..+..- ...+.+..|
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~--pev--~lGl~p~~g~------------~~~l~~~vG-- 178 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGF--PEI--LFNLFPGMGA------------YSFLARRVG-- 178 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeC--chh--hhCcCCCchH------------HHHHHHHhh--
Confidence 57899999999999999999999995 899999987665 442 1121111100 011222333
Q ss_pred HHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 124 ~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.....+++-.+..|+++||+++||||+|.++.
T Consensus 179 ~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 179 PKLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 23445666678889999999999999998764
No 84
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.98 E-value=3.6e-05 Score=69.74 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCCCc-cCCCccHHHHHHHHHHH---hhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEe
Q 029701 9 SKPIYLYINSSGTQNEK-KESVGAETDAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~-~~~~G~v~~g~~Iyd~i---~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH 84 (189)
.-||.-+|||||..... -|-.| .+-+|...+ -....|+.++++|-+.|.|++.+++| +..+|.++|.+.+-
T Consensus 221 ~lPIVtLVDTpGA~pG~~AEe~G---qa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysVi 295 (431)
T PLN03230 221 GFPILTFVDTPGAYAGIKAEELG---QGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYVA 295 (431)
T ss_pred CCCEEEEEeCCCcCCCHHHHHHh---HHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEec
Confidence 46899999999933211 01111 123444444 45679999999999999999988878 47899999987775
Q ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.|. + -+.=| ++.-.+ .++..+ ..-+||+++++.|+||+|+...
T Consensus 296 sPE-g----aAsIL---wkd~~~----------------A~eAAe----alkitA~dL~~~GiID~II~Ep 338 (431)
T PLN03230 296 SPE-A----CAAIL---WKSAAA----------------APKAAE----ALRITAAELVKLGVVDEIVPEP 338 (431)
T ss_pred CHH-H----HHHHH---hccccc----------------hHHHHH----HcCCCHHHHHhCCCCeEeccCC
Confidence 554 1 11111 110000 111111 2268999999999999999864
No 85
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.00012 Score=61.86 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=75.4
Q ss_pred CCeE-EEEcCCCCCCCccCCCccHHH---------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCc
Q 029701 10 KPIY-LYINSSGTQNEKKESVGAETD---------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 10 ~~I~-l~INSpG~~~~~~~~~G~v~~---------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s 79 (189)
+.+. |.|.+.|...+.|..+..+.. ...++..|..++.||.+.+.|.|.+.|.-+.+++| .|++.+++
T Consensus 43 ~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a 120 (248)
T PRK06072 43 PKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTD--FKFASRDV 120 (248)
T ss_pred CCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCC
Confidence 3443 445666655565554432211 12355667788999999999999999999999994 89999999
Q ss_pred eEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 80 STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 80 ~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
.|.+....++...+-..- . .+.+..| . ...+++-.+..|+++||+++||||++
T Consensus 121 ~f~~~~~~~Gl~p~~g~~------~----------~l~~~~g--~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 121 KFVTAFQRLGLASDTGVA------Y----------FLLKLTG--Q-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred EEecchhhcCcCCCchHH------H----------HHHHHhh--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 987644433322111100 0 0111112 1 22334445667899999999999975
No 86
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.0001 Score=62.40 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=68.3
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
++..|..++.||.+.+.|.|.+.|.-|++++| .|++.++++|.+=...+|... |...-
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------ 151 (260)
T PRK05980 92 MTARLEAFPKPVIAAVNGLAFGGGCEITEAVH--LAIASERALFAKPEIRLGMPPTFGGTQR------------------ 151 (260)
T ss_pred HHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCC--EEEecCCCEecCcccccCCCCCchHhhH------------------
Confidence 56677788999999999999999999999994 899999998776222222211 11111
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+..| .....+++-.+..++++||+++||||+|.++.
T Consensus 152 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 152 LPRLAG--RKRALELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred HHhhcC--HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 111222 23335556667889999999999999998764
No 87
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.96 E-value=6.5e-05 Score=63.65 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=69.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|..|.+++| .|++.+++.|.+....+|.. .... . ..+
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~----p~~~--~-----------~~l 147 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFGLI----PACV--L-----------PFL 147 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhccC----cchh--h-----------HHH
Confidence 355567788999999999999999999999995 89999999887644332221 1110 0 011
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
..+.| .....+++-.+.-|+++||+++||||+|.++.+
T Consensus 148 ~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 148 IRRIG--TQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred HHHhC--HHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 22222 333345566677899999999999999987654
No 88
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.96 E-value=9.8e-05 Score=63.93 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=70.2
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.++++|.+-...+|..-+-..-. . +
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~~-----~-----------l 165 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFGRRGIVPEAASSW-----F-----------L 165 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecchhhcCcCCCcchhh-----h-----------H
Confidence 356678888999999999999999999999995 899999998877544333221110000 0 1
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| ...-.+++-....++++||+++||||+|.+..
T Consensus 166 ~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 166 PRLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred HHhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 11112 23335666677889999999999999998754
No 89
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.00012 Score=61.99 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.+-...++...+...- . . +.
T Consensus 91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~p~~g~~-~----~-----------l~ 152 (262)
T PRK08140 91 LVRRLRALPLPVIAAVNGVAAGAGANLALACD--IVLAARSASFIQAFVKIGLVPDSGGT-W----F-----------LP 152 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEEeccccccCCCCCccHH-H----H-----------HH
Confidence 55677888999999999999999999999994 89999999887533222211111100 0 0 11
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.-| .....+++-...-|+++||+++||||+|.++.
T Consensus 153 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 153 RLVG--MARALGLALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred HHhC--HHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence 1112 22334556677889999999999999999764
No 90
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.0001 Score=62.70 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc-cccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV-VGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~-~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
.++..|..++.||.+.+.|.|.+.|.-+++++| .|++.+++.|.+=... ++...+.. ... .
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~~G~~p~~g-~~~---------------~ 154 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAACD--LRIATPSARFGFPIARTLGNCLSMS-NLA---------------R 154 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHHHHHHhCC--EEEecCCCEeechhHHhccCCCCcc-HHH---------------H
Confidence 355667788999999999999999999999995 8999999987652211 12111110 000 1
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+..| .....+++-....++++||+++||||+|.++.
T Consensus 155 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 155 LVALLG--AARVKDMLFTARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred HHHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence 222223 23345566678899999999999999999864
No 91
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.94 E-value=0.0001 Score=63.91 Aligned_cols=96 Identities=10% Similarity=0.037 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|+-|++++| -|++.+++.|.+ |.. ...|-... . . +
T Consensus 118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~--pe~-~~gg~~~~----~--~----------~ 176 (302)
T PRK08272 118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY--PPT-RVWGVPAT----G--M----------W 176 (302)
T ss_pred HHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC--cch-hcccCChH----H--H----------H
Confidence 346677788999999999999999999999995 899999997754 442 11222211 0 0 1
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
..+.| .....+++-.+..|+++||+++||||+|.+..
T Consensus 177 ~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 177 AYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred HHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 11223 34445677788999999999999999998754
No 92
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.94 E-value=7.2e-05 Score=64.02 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCC-hHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~~y 116 (189)
+++.|..++.||.+.+.|.|.+.|.-|.+++| .|++.+++.|.+-.+.++...+- ... . +
T Consensus 99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~~~~~------~-----------l 159 (273)
T PRK07396 99 LQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCD--LTIAADNAIFGQTGPKVGSFDGGYGAS------Y-----------L 159 (273)
T ss_pred HHHHHHhCCCCEEEEECCEEehHHHHHHHhCC--EEEeeCCcEEecccccccccCCchHHH------H-----------H
Confidence 55677888999999999999999999999994 89999999887643433322111 000 0 1
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-....|+++||+++||||+|.++.
T Consensus 160 ~~~vG--~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 160 ARIVG--QKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HHHhh--HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 11112 22334555667889999999999999998754
No 93
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.93 E-value=3.2e-05 Score=67.98 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~ 87 (189)
.-||.-++||||.... .-|..|...........+-....|+.++++|.|.|.|++.+..+ +.++|.|++.+.+-.|.
T Consensus 151 ~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sVisPE 228 (316)
T TIGR00513 151 KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSVISPE 228 (316)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEecCHH
Confidence 4689999999993311 01111222222223333446679999999999999999877666 57899999988876665
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+ -+.=+ ++.- ...++..+. .-+||+++++.|+||+|++.+
T Consensus 229 -g----~a~Il---~kd~----------------~~a~~aae~----~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 229 -G----CAAIL---WKDA----------------SKAPKAAEA----MKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred -H----HHHHh---ccch----------------hhHHHHHHH----ccCCHHHHHHCCCCeEeccCC
Confidence 2 11111 1100 001222222 345899999999999999865
No 94
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.93 E-value=8.4e-05 Score=63.38 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
.++..|..++.||.+.+.|.|.+.|.-+++++| -|++.+++.|.+ |.. ..|-..+.. ... +
T Consensus 92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D--~~ia~~~a~f~~--pe~--~~Gi~p~~~--~~~-----------l 152 (265)
T PRK05674 92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCCD--MAIGADDAQFCL--SEV--RIGLAPAVI--SPF-----------V 152 (265)
T ss_pred HHHHHHHcCCCCEEEEEcCEEEechhhHhhhcC--EEEEeCCCEEeC--ccc--ccCCCcchh--HHH-----------H
Confidence 355567788999999999999999999999995 899999998876 542 122222211 000 1
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.++.| ...-.+++-.+.-|+++||+++||||+|.+..
T Consensus 153 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (265)
T PRK05674 153 VKAIG--ERAARRYALTAERFDGRRARELGLLAESYPAA 189 (265)
T ss_pred HHHhC--HHHHHHHHHhCcccCHHHHHHCCCcceecCHH
Confidence 11222 22334455567779999999999999998753
No 95
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.92 E-value=9.1e-05 Score=62.86 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=79.1
Q ss_pred EEEcCCCCCCCccCCCccHHH-------------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCce
Q 029701 14 LYINSSGTQNEKKESVGAETD-------------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~~-------------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~ 80 (189)
|.|.+.|...+.|..+..+.. ...++..|..++.||.+.+.|.|.+.|+-|++++| .|++.++++
T Consensus 53 vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD--~ria~~~a~ 130 (260)
T PRK07659 53 VVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTAD--YVIADISAK 130 (260)
T ss_pred EEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCC--EEEEcCCCE
Confidence 555677766666655433211 12244556778999999999999999999999994 899999998
Q ss_pred EEEecccccccc--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEe
Q 029701 81 TKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (189)
Q Consensus 81 ~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (189)
|-+.....+... |...- +.++.| .....+++-.+..|+++||+++||||+|.
T Consensus 131 f~~pe~~~Gl~p~~g~~~~------------------L~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 131 LAMNFIGIGLIPDGGGHFF------------------LQKRVG--ENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred EcCchhhcCCCCCCchhhh------------------HHHhcC--HHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 766443322221 21111 112222 34445666678899999999999999998
No 96
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.92 E-value=8.7e-05 Score=62.93 Aligned_cols=120 Identities=15% Similarity=0.075 Sum_probs=74.9
Q ss_pred EEEcCCCCCCCccCCCccHH---------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccC
Q 029701 14 LYINSSGTQNEKKESVGAET---------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~---------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
|.|.+.|...+.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|++++| .|++.++
T Consensus 54 vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~ 131 (260)
T PRK07827 54 VVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPE 131 (260)
T ss_pred EEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCC
Confidence 44577776666555442211 112355667788999999999999999999999995 8999999
Q ss_pred ceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 79 SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 79 s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
+.|.+=...+|...+-..-. .+.+ +.. ....+++-.+..++++||+++||||+|.++
T Consensus 132 a~f~~pe~~~Gl~p~~g~~~-----~l~~----l~~----------~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 132 STFALTEARIGVAPAIISLT-----LLPR----LSP----------RAAARYYLTGEKFGAAEAARIGLVTAAADD 188 (260)
T ss_pred CEEeCcccccCCCCCcccch-----hHHh----hhH----------HHHHHHHHhCCccCHHHHHHcCCcccchHH
Confidence 98765322222211111000 0100 000 112333445677899999999999999754
No 97
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.91 E-value=4.1e-05 Score=64.58 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
.+..|..++.||.+.+.|.|.+.|.-+.+++| .|++.+++.|.+....++...+...- ..+.
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~----------------~~l~ 148 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAAD--VRIAGPKALFDARFQKLGLHPGGGAT----------------WMLQ 148 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhCC--EEEEcCCCEEeCcccccCcCCCCcce----------------eeHH
Confidence 44567788999999999999999999999995 89999999987644433322111000 0011
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEe
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (189)
+..| .....+++-.+..++++||+++||||+|.
T Consensus 149 ~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 149 RAVG--PQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred hhhC--HHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 2222 33345555667789999999999999998
No 98
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.90 E-value=0.00012 Score=62.12 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
.+++.|..++.||.+.+.|.|.+.|.-|.+++| .|++.++++|.+-...+|... |-..-+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~p~~~~~~~l---------------- 149 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTGPKVGSFDGGYGSSYL---------------- 149 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcccccccCCCccHHHHH----------------
Confidence 456678888999999999999999999999995 899999998887544433221 111111
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-....++++||+++||||+|.++.
T Consensus 150 --~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 150 --ARIVG--QKKAREIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred --HHHhH--HHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 11111 12234455567789999999999999998754
No 99
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.89 E-value=0.00013 Score=62.83 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=70.4
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.++++|.+-...++.. ..+... ...+.
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~lGl~---~p~~~~------------~~~l~ 161 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGLNEVALGIP---VPKFWA------------RLFMG 161 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHHHHHHhCC--EEEecCCCEecCcHHHhCCC---CCChhH------------HHHHH
Confidence 45667888999999999999999999999994 89999999877633222211 111100 01233
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+..| ...-.+++-.+.-|+++||+++||||+|.+..
T Consensus 162 ~~~G--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 162 RVID--RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred HhcC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 3333 34445667778889999999999999999764
No 100
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.87 E-value=6.1e-05 Score=66.31 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~ 87 (189)
+-||.-.+||||.... .-|--|....+......+-....|+.++++|.+.|.|++.+..+ +..+|.|+|.+.+-.|.
T Consensus 151 ~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~svisPE 228 (319)
T PRK05724 151 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSVISPE 228 (319)
T ss_pred CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEeecCHH
Confidence 4689999999993321 00111333333334444557789999999999999999887777 47899999988776664
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+ -+.=+ ++. . ...++..+ ..-+||+++++.|+||+|+..+
T Consensus 229 -g----~a~Il---~~~---------------~-~~a~~aae----~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 229 -G----CASIL---WKD---------------A-SKAPEAAE----AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred -H----HHHHH---hcC---------------c-hhHHHHHH----HcCCCHHHHHHCCCceEeccCC
Confidence 1 11111 110 0 11222233 3348999999999999999864
No 101
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.87 E-value=0.0002 Score=60.73 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc-CChHHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS-GPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~-G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
.++..|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.+=.+.++... +-... .
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~~~~~~~~-----------------~ 145 (256)
T TIGR03210 85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTICD--LTIASEKAQFGQVGPKVGSVDPGYGTA-----------------L 145 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEehhhHHHHHhCC--EEEEeCCCEEecccccccccCCccHHH-----------------H
Confidence 356778888999999999999999999999995 899999998876333322110 10000 0
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.+..| ...-.+++-.+..|+++||+++||||+|.+..
T Consensus 146 l~~~vG--~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 146 LARVVG--EKKAREIWYLCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred HHHHhC--HHHHHHHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence 112222 22224445557789999999999999999754
No 102
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.84 E-value=0.00012 Score=63.03 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=75.3
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccc--ccCChHHHHHHHHHHHHHHHHHH
Q 029701 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR--SSGPVTDMWRKAKDLEANAESYI 113 (189)
Q Consensus 36 ~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~--~~G~~~dl~~~~~~l~~~~~~~~ 113 (189)
+..++.+-.++.||.+-+.|+|.+.|+-|.+.|| -|||.++|.|+.-++.+|. .+|-..-+.+
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl~r------------- 181 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRLPR------------- 181 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhHHH-------------
Confidence 4456666678999999999999999999999995 7999999999988776542 2222222211
Q ss_pred HHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
--| +.+-.+++-..+.++|+||++.|||++|.....
T Consensus 182 -----~vG--~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 182 -----IVG--KSRALEMILTGRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred -----HhC--hHHHHHHHHhcCcccHHHHHhCCceeEeecchh
Confidence 112 334456778899999999999999999998765
No 103
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00017 Score=62.71 Aligned_cols=95 Identities=8% Similarity=-0.072 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
.+..|..++.||.+.+.|.|.+.|.-|.++|| -|++.++++|.+-...+ .|-... . .+ .
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~~l---~G~~~~----~-~~-----------~ 162 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYSRM---WGAYLT----G-MW-----------L 162 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEecccccc---ccCCch----h-HH-----------H
Confidence 45567788999999999999999999999995 79999999887633321 121100 0 00 0
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+.| .....+++-.+..|+++||+++||||+|.++.
T Consensus 163 ~~vG--~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 163 YRLS--LAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred HHhh--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 1122 34556777788999999999999999999764
No 104
>PLN02600 enoyl-CoA hydratase
Probab=97.83 E-value=0.00028 Score=59.64 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
++..|..++.||.+.+.|.|.+.|.-|.+++| .|++.++++|.+ |... .|-..+..- .. .+.
T Consensus 80 ~~~~l~~~~kPvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~--pe~~--~Gl~p~~g~----~~--------~l~ 141 (251)
T PLN02600 80 TFSSLEALSIPTIAVVEGAALGGGLELALSCD--LRICGEEAVFGL--PETG--LAIIPGAGG----TQ--------RLP 141 (251)
T ss_pred HHHHHHhCCCCEEEEecCeecchhHHHHHhCC--EEEeeCCCEEeC--cccc--cCcCCCchH----HH--------HHH
Confidence 45667788999999999999999999999995 899999998876 4321 121111000 00 011
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
...| ...-.+++-....|+++||+++||||+|.++.+
T Consensus 142 ~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 178 (251)
T PLN02600 142 RLVG--RSRAKELIFTGRRIGAREAASMGLVNYCVPAGE 178 (251)
T ss_pred HHhC--HHHHHHHHHhCCccCHHHHHHcCCCcEeeChhH
Confidence 1111 223345556677899999999999999987653
No 105
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.82 E-value=0.00011 Score=64.74 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHH--HHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAET--DAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~--~g~~Iyd~---i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
.-||.-.|+|||..... +... .+-.|... +.....|+.++++|-+.|.|++.+..+ +..+|.++|.+.+
T Consensus 154 ~lPIItlvDTpGA~~G~----~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~~sV 227 (322)
T CHL00198 154 GLPILTFIDTPGAWAGV----KAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAVYTV 227 (322)
T ss_pred CCCEEEEEeCCCcCcCH----HHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeEEEe
Confidence 46899999999933210 1111 12344443 356679999999999999999877766 5889999998888
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
-.|. + -+.-+ ++.-.+ ..+ ..+-.-+||++-++.|+||+|+..+
T Consensus 228 isPE-g----~a~Il---~~d~~~----------------a~~----aA~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 228 ATPE-A----CAAIL---WKDSKK----------------SLD----AAEALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred cCHH-H----HHHHH---hcchhh----------------HHH----HHHHcCCCHHHHHhCCCCeEeccCC
Confidence 6665 2 12111 110000 011 1223348999999999999999865
No 106
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.81 E-value=0.00029 Score=59.72 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=64.3
Q ss_pred hcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccc--cCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029701 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTG 121 (189)
Q Consensus 44 ~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg 121 (189)
.++.||.+.+.|.|.+.|.-+++++ +.|++.+++.|.+-....+.. .|... .+.+..|
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~~~iG 150 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRWGVPLIDGGTV------------------RLPRLIG 150 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCcccccCCCCCccHHH------------------HHHHHhC
Confidence 5689999999999999999999999 489999999876532221211 11110 0112223
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 122 ~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
...-.+++-.+..|+++||+++||||+|.+..
T Consensus 151 --~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 151 --HSRAMDLILTGRPVDADEALAIGLANRVVPKG 182 (254)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence 33445666778899999999999999998865
No 107
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.80 E-value=0.00026 Score=59.53 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc-CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p-~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
++..|..++.||.+.+.|.|.+.|..|++++| .|++.+ .+.|.+-...++.. ..+.. ...+
T Consensus 86 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~---~p~~~-------------~~~l 147 (239)
T PLN02267 86 LVADLISLPMPTIAAVTGHASAAGFILALSHD--YVLMRKDRGVLYMSEVDIGLP---LPDYF-------------MALL 147 (239)
T ss_pred HHHHHhcCCCCEEEEECCcchHHHHHHHHHCC--EEEecCCCCeEeccccccCCC---CChHH-------------HHHH
Confidence 55667888999999999999999999999994 799975 45665532222211 11110 0112
Q ss_pred HHhcCCCHHHH-HHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 117 AKGTGKPKEEI-AKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 117 a~~tg~~~e~i-~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
..+.|.. .. .+++-....|+++||+++||||+|.++.++
T Consensus 148 ~~~vG~~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~ 187 (239)
T PLN02267 148 RAKIGSP--AARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEE 187 (239)
T ss_pred HHHcChH--HHHHHHHHcCCcCCHHHHHHCCCcceecCCHHH
Confidence 2333322 22 356667888999999999999999975443
No 108
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.76 E-value=0.00024 Score=60.32 Aligned_cols=95 Identities=11% Similarity=-0.030 Sum_probs=66.3
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029701 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121 (189)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg 121 (189)
+..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.+-...++..-+-..- . .+....|
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~g~~----~------------~l~r~vG 157 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGTD--IRVAGESAKFGISEAKWSLFPMGGSA----V------------RLVRQIP 157 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhCC--EEEecCCCEecCcccccCcCCCccHH----H------------HHHHHhC
Confidence 4577899999999999999999999994 89999999876633332221110000 0 0111222
Q ss_pred CCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 122 ~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
.....+++-....|+++||+++||||+|.++..
T Consensus 158 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 158 --YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 334456677788899999999999999998653
No 109
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.76 E-value=0.00029 Score=59.72 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHh---hcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 8 ASKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 8 ~~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~---~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
.+.||...+++||-... .-|..|-...+-.+...+. ..+.|+.+++.|.+.|.|.+-+..+. +..++.|++.+-.
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~v 143 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVHV 143 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEEe
Confidence 46899999999994432 2233344444444444554 44599999999999999887775333 6789999997765
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhc--CCCcccHHHHHHcCCceEEeCCch
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ--RPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~--~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
-.|. + +..+ .. ++.+++.+..+ ..+-.+++.+.+.|+||+|+++.+
T Consensus 144 m~~e-----~-aa~I--~~-------------------~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 144 MDLE-----S-MARV--TK-------------------RSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred cCHH-----H-HHHH--Hc-------------------cCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 4443 1 1111 11 22233333322 234568889999999999999765
No 110
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.72 E-value=0.00032 Score=65.98 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=65.5
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccC--ceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
+.+.|..++.||.+.+.|.|.+.|..|.+++| .|++.++ ++|.+ |... ..|-..+..... .
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg~--pEv~-~~Gl~P~~gg~~------------r 177 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVSL--PEVP-LLGVLPGTGGLT------------R 177 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchh-ccccCCCcchHH------------H
Confidence 45567788999999999999999999999995 8999887 55544 4321 011111110000 0
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
+............+++-.+..|+++||+++||||+|.++
T Consensus 178 l~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~ 216 (550)
T PRK08184 178 VTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP 216 (550)
T ss_pred hhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence 111111223334455556789999999999999999975
No 111
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.71 E-value=0.00038 Score=62.25 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccccccc--CChHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
.+++.|..++.||.+.+.|.|.+.|.-|.++|| .|++.+++.|-+-.+.++... |...-+.
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~PE~rlGl~P~~Ggt~rLp--------------- 177 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPKHGSAPIGGATDFLP--------------- 177 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCchhccCCCCCccHHHHHH---------------
Confidence 466778888999999999999999999999995 899999998876444333221 1111111
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
...| ......++-....|+|+||+++||||+|.+..+
T Consensus 178 ---rlvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~ 214 (360)
T TIGR03200 178 ---LMIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALK 214 (360)
T ss_pred ---HhhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchh
Confidence 1111 122233344567899999999999999988654
No 112
>PRK08321 naphthoate synthase; Validated
Probab=97.70 E-value=0.0006 Score=59.32 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecc-cCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~-p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~y 116 (189)
+.+.|..++.||.+.+.|.|.+.|.-|++++| .|++. +++.|.+-...++...+-..- ..+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L 188 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSFDGGYGS----------------AYL 188 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEECCccccccCCCchHH----------------HHH
Confidence 44567788999999999999999999999995 79998 588876532222211111000 011
Q ss_pred HHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 117 a~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| .....+++-.+..|+++||+++||||+|.++.
T Consensus 189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 22223 23345566678899999999999999999854
No 113
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.00071 Score=57.22 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=64.8
Q ss_pred hhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029701 43 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122 (189)
Q Consensus 43 ~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~ 122 (189)
..++.||.+.+.|.|.+.|.-+++++| .|++.+++.|.+ |.. ..|-..+..- . ..+.++.|
T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~--pe~--~~Gl~p~~g~----~--------~~l~~~vg- 148 (254)
T PRK08252 88 RPPRKPLIAAVEGYALAGGFELALACD--LIVAARDAKFGL--PEV--KRGLVAAGGG----L--------LRLPRRIP- 148 (254)
T ss_pred hcCCCCEEEEECCEEehHHHHHHHhCC--EEEEeCCCEEeC--chh--hcCCCCCchH----H--------HHHHHHcC-
Confidence 357899999999999999999999995 899999998765 432 1121111100 0 01122223
Q ss_pred CHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 123 ~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
...-.+++-.+..|+++||+++||||+|.++.
T Consensus 149 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 149 -YHIAMELALTGDMLTAERAHELGLVNRLTEPG 180 (254)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence 33445666677889999999999999999765
No 114
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.67 E-value=0.00079 Score=65.12 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=80.9
Q ss_pred EEEEcCCCCCCCccCCCccHH---------------HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 13 YLYINSSGTQNEKKESVGAET---------------DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 13 ~l~INSpG~~~~~~~~~G~v~---------------~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
-|.|.+.|..+|.|..+..+. ....++..|..++.||.+.+.|.|.+.|.-|.++|| .|++.+
T Consensus 54 ~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD--~ria~~ 131 (715)
T PRK11730 54 GLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATD--YRVASP 131 (715)
T ss_pred EEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCC--EEEEcC
Confidence 355567675666655443321 112356677888999999999999999999999994 899999
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+++|.+=...+|..-+-..- . .+.+..| .....+++-.+..++++||+++||||+|.+..
T Consensus 132 ~a~f~~pe~~lGl~p~~g~~----~------------~L~rlvG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 132 DARIGLPETKLGIMPGFGGT----V------------RLPRLIG--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred CCEEeCchhhcCCCCCchHH----H------------HHHHhcC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 99887633322221111100 0 0111122 22335566677889999999999999998754
No 115
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.62 E-value=0.00076 Score=65.08 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccc--cccccCChHHHHHHHHHHHHHHHHHH
Q 029701 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV--VGRSSGPVTDMWRKAKDLEANAESYI 113 (189)
Q Consensus 36 ~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~--~~~~~G~~~dl~~~~~~l~~~~~~~~ 113 (189)
..++..|..++.||.+.+.|.|.+.|.-|.++| +.|++.+++...+..|. ++..-+...-
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~~---------------- 147 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGGT---------------- 147 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccHH----------------
Confidence 446778889999999999999999999999999 48999987433333344 2222111100
Q ss_pred HHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
..+.+..| ...-.+++-.+..++++||+++||||+|.++.
T Consensus 148 ~~L~r~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 148 QRLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred HHHHHhcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 00111122 22334566678889999999999999999764
No 116
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.56 E-value=0.00031 Score=67.46 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHH---hhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEe
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i---~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH 84 (189)
.-||.-+|+|||.... ..|..|. +-+|...+ .....|+.++++|-|+|.|++.++.+ +..+|.+++.+.+-
T Consensus 242 gLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sVi 316 (762)
T PLN03229 242 GFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYVA 316 (762)
T ss_pred CCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEec
Confidence 4689999999994321 1111222 33444434 46679999999999999999988877 47899999886664
Q ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.|. + -+.- .++.-. ...+..+ -.-+||++-++.|+||+|+..+
T Consensus 317 sPE-g----aAsI---Lwkd~~----------------~A~eAAe----~lkiTa~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 317 SPE-A----CAAI---LWKSAK----------------AAPKAAE----KLRITAQELCRLQIADGIIPEP 359 (762)
T ss_pred CHH-H----HHHH---HhcCcc----------------cHHHHHH----HcCCCHHHHHhCCCCeeeccCC
Confidence 443 1 1111 111111 1111122 2348899999999999999864
No 117
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.52 E-value=0.0011 Score=64.12 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHH
Q 029701 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 35 g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
+..+++.|..++.||.+.+.|.|.+.|.-|.++| +.|++.+++.|.+=...+|..-|-..-. .|
T Consensus 91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~-----rL--------- 154 (714)
T TIGR02437 91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV-----RL--------- 154 (714)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH-----HH---------
Confidence 3457788889999999999999999999999999 5899999998876333223221111100 01
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..| ...-.+++-.+..++++||+++||||+|.+..
T Consensus 155 --~rliG--~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~ 191 (714)
T TIGR02437 155 --PRVIG--ADNALEWIASGKENRAEDALKVGAVDAVVTAD 191 (714)
T ss_pred --HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChh
Confidence 11112 22234556667889999999999999998653
No 118
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.49 E-value=0.0019 Score=62.46 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCc--eEEEeccccccccCChHHHHHHHHHHHHHHHHHHH
Q 029701 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 114 (189)
Q Consensus 37 ~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s--~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~ 114 (189)
.+++.|..++.||.+.+.|.|.+.|.-|.++| +.|++.+++ .|.+....+|...|-..- .
T Consensus 92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg~----------------~ 153 (708)
T PRK11154 92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGGT----------------Q 153 (708)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccHH----------------h
Confidence 46778889999999999999999999999999 489999986 455433332322111100 0
Q ss_pred HHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 115 ~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+..+.| ...-.+++-.+..++++||+++||||+|.+..
T Consensus 154 ~L~r~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 154 RLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HHHhhcC--HHHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 1112223 23345667778889999999999999999764
No 119
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.46 E-value=0.0039 Score=60.59 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCeE--EEEcCCCCCCCccCCCccH-------------HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCcee
Q 029701 10 KPIY--LYINSSGTQNEKKESVGAE-------------TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRG 74 (189)
Q Consensus 10 ~~I~--l~INSpG~~~~~~~~~G~v-------------~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~ 74 (189)
..+. |.+.+.|...+.|..+..+ .....++..|..++.||.+.+.|.|.+.|.-|.++| +.|+
T Consensus 57 ~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ri 134 (737)
T TIGR02441 57 EAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRI 134 (737)
T ss_pred CCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEE
Confidence 4454 4557777566655444222 123457778889999999999999999999999999 4899
Q ss_pred cccCc--eEEEeccccccccC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceE
Q 029701 75 LQPNS--STKLYLPVVGRSSG--PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADK 150 (189)
Q Consensus 75 ~~p~s--~~miH~p~~~~~~G--~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~ 150 (189)
+.+++ .|.+....+|..-| -..- +.+..| ...-.+++-.+..++++||+++||||+
T Consensus 135 a~~~a~a~fglpEv~lGl~Pg~Ggt~r------------------LprliG--~~~A~~l~ltG~~i~a~eA~~~GLVd~ 194 (737)
T TIGR02441 135 ATKDRKTLLGLPEVMLGLLPGAGGTQR------------------LPKLTG--VPAALDMMLTGKKIRADRAKKMGIVDQ 194 (737)
T ss_pred EcCCCCCeEecchhhhCCCCCccHhhh------------------HHHhhC--HHHHHHHHHcCCcCCHHHHHHCCCCeE
Confidence 99985 44443222222211 1111 111222 222345566788999999999999999
Q ss_pred EeCC
Q 029701 151 IIDS 154 (189)
Q Consensus 151 I~~~ 154 (189)
|.++
T Consensus 195 vv~~ 198 (737)
T TIGR02441 195 LVDP 198 (737)
T ss_pred ecCC
Confidence 9986
No 120
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=97.40 E-value=0.00039 Score=61.62 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=66.4
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccc--cCChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
++..|..++.||.+.+.|.|.+.|+-|.+++| .|++.++++|.+=...+|.. .|...-+.
T Consensus 92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~P~~g~~~~L~---------------- 153 (342)
T PRK05617 92 LNALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFPDVGGTYFLS---------------- 153 (342)
T ss_pred HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCccccCcCCCccceeEeh----------------
Confidence 45667888999999999999999999999994 89999999887633332322 12111110
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.-| ..-..++-.+..++++||+++||||+|.++.
T Consensus 154 --r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 154 --RAPG---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred --hccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 0111 1123444457789999999999999998764
No 121
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.36 E-value=0.0015 Score=58.81 Aligned_cols=95 Identities=19% Similarity=0.087 Sum_probs=64.2
Q ss_pred HHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 029701 40 DAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119 (189)
Q Consensus 40 d~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~ 119 (189)
..|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|.+=...+|.. .+..... .|-++ ....
T Consensus 99 ~~i~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~iGl~----p~~g~~~-~L~rl----~g~~--- 164 (379)
T PLN02874 99 YHIHTYKKTQVALVHGLVMGGGAGLMVPMK--FRVVTEKTVFATPEASVGFH----TDCGFSY-ILSRL----PGHL--- 164 (379)
T ss_pred HHHHhCCCCEEEEecCeEEecHHHHHHhCC--eEEEeCCeEEeccccccCcC----CChhHHH-HHHhh----hHHH---
Confidence 356788999999999999999999999994 89999999877633332222 1211000 01111 1000
Q ss_pred cCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 120 tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
-..++-.+..++++||+++||||+|+++.
T Consensus 165 -------a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 165 -------GEYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred -------HHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 12344567789999999999999999754
No 122
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.28 E-value=0.0031 Score=56.87 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=76.1
Q ss_pred EEEcCCCCCCCccCCCccHHH----------------HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceeccc
Q 029701 14 LYINSSGTQNEKKESVGAETD----------------AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~~----------------g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p 77 (189)
|.|.+.|...|.|..+..+.. ...+...|..++.||.+.+.|.|.+.|.-|.++|+ .|++.+
T Consensus 57 VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D--~rvate 134 (381)
T PLN02988 57 VILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR--FRIATE 134 (381)
T ss_pred EEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCC--eEEEcC
Confidence 556777756666654433321 11223356778999999999999999999999994 899999
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
++.|-+=...+|.+ .+..-.. .|-++ ....+ ..++-.+..++++||++.||+|+++++.
T Consensus 135 ~a~f~mPE~~iGl~----Pd~G~s~-~L~rl----~G~~~----------~~l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 135 NTVFAMPETALGLF----PDVGASY-FLSRL----PGFFG----------EYVGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred CcEEeChhhhcCcC----CCccHHH-HHHHH----HHHHH----------HHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence 99776422222221 1111000 11111 11101 2344556789999999999999999764
No 123
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.26 E-value=0.002 Score=58.55 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=65.4
Q ss_pred HHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 029701 40 DAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG 119 (189)
Q Consensus 40 d~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~ 119 (189)
..|..++.||.+.+.|.|.+.|.-|.++|+ .|++.+++.|-+=...+|.+ .+..-.. .|-+ .
T Consensus 127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~PE~~iGl~----Pd~G~s~-~L~r-----------l 188 (401)
T PLN02157 127 YLLGTYLKPHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFATPETIIGFH----PDAGASF-NLSH-----------L 188 (401)
T ss_pred HHHHhCCCCEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEChhhhcCCC----CCccHHH-HHHH-----------h
Confidence 457788999999999999999999999995 89999999876533322222 1211000 1111 1
Q ss_pred cCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 120 TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 120 tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
.|. .-..++-.+..|+++||+++||+|+|+++.+
T Consensus 189 ~G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 189 PGR---LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred hhH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 110 1133445678999999999999999997653
No 124
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.26 E-value=0.0029 Score=59.82 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcc--CCCceecccCceEEEec
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag--~~~~R~~~p~s~~miH~ 85 (189)
+-||...+|+||.... +.|--|.+..+-.++.++.....|+.|+++|.+++.|.+-++.. ..+..++.|++.+-.-.
T Consensus 401 ~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg 480 (569)
T PLN02820 401 GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMG 480 (569)
T ss_pred CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecC
Confidence 4588999999995431 22333777888888888889999999999999999999766532 23456666777665533
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
|. | +..+. +..++.+..+.-...-.+....-.+++.+..+ ...++..|-+.|+||.||++.+.
T Consensus 481 ~e-----~-aa~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 481 GA-----Q-AAGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred HH-----H-HHHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHHHcCCcCcccCHHHH
Confidence 32 1 12211 22223211111000000000000122222222 26789999999999999987543
No 125
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.25 E-value=0.0026 Score=59.92 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=69.3
Q ss_pred HHHHHhhcCCCeEEEE-ccccccHH-HHHHhccCCCceec-------ccCceEEEecccccccc--CChHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVN-CGMAYGQA-AMLLSVGAKGYRGL-------QPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE 106 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~-~G~aaS~a-~lIl~ag~~~~R~~-------~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~ 106 (189)
++..|..++.||.+.+ .|.|.+.| .=|.++|| -|++ .+++.|.+-...++... |...
T Consensus 357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~---------- 424 (546)
T TIGR03222 357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS---------- 424 (546)
T ss_pred HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCccccccCCCcCcHH----------
Confidence 6678888999999999 89999999 88888884 7999 89998876444333221 2111
Q ss_pred HHHHHHHHHHHHhc-CCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 107 ANAESYIELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 107 ~~~~~~~~~ya~~t-g~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.+.++. |.+...-.+++-.+..|+++||+++|||++|.++.
T Consensus 425 --------~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 425 --------RLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred --------HHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 122233 43333323334467889999999999999998764
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.23 E-value=0.0019 Score=60.83 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=63.8
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccC--ceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
+.+.|+.++.||.+.+.|.|.+.|.-|.++|| -|++.++ ++|.+ |... ..|-.....- +..
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~--pEv~-~lGl~P~~gg----~~~-------- 173 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALACD--EIMLVDDRSSSVSL--PEVP-LLGVLPGTGG----LTR-------- 173 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc--cchh-ccCcCCccch----hhh--------
Confidence 45566788999999999999999999999995 8999886 45544 4421 0121111100 000
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCC
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (189)
+............+++-...-|+++||+++||||+|.++
T Consensus 174 l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 174 VTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred ccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh
Confidence 000001122233444556778999999999999999875
No 127
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.10 E-value=0.0052 Score=55.93 Aligned_cols=95 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred HHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029701 41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120 (189)
Q Consensus 41 ~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~t 120 (189)
.|..++.||.+.+.|.|.+.|.-|.++++ .|++.+++.|.+=...+|.+ .|+.... .|-++-... +
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~famPE~~iGl~----PdvG~s~-~L~rl~g~~----g--- 198 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAHPEVQMGFH----PDAGASY-YLSRLPGYL----G--- 198 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEecchhccCCC----CCccHHH-HHHHhcCHH----H---
Confidence 45677899999999999999999999994 89999999887633332322 1211000 111111111 1
Q ss_pred CCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 121 g~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
..++-.+..|+++||+++||+|+++.+..
T Consensus 199 -------~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 199 -------EYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred -------HHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 12344577899999999999999998764
No 128
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.02 E-value=0.00046 Score=58.40 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHH
Q 029701 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (189)
Q Consensus 36 ~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (189)
..-|..|..++.||.+-+.|.|.++|.=|..|++ -||+...+.|.+...-+ |-+.|+. -|+++-+.+-
T Consensus 116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDv----glaADvG----TL~RlpkvVG-- 183 (292)
T KOG1681|consen 116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDV----GLAADVG----TLNRLPKVVG-- 183 (292)
T ss_pred HHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeee----ehhhchh----hHhhhhHHhc--
Confidence 4456778888999999999999999999989985 79999999999876543 4455643 3333332221
Q ss_pred HHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHH
Q 029701 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158 (189)
Q Consensus 116 ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~ 158 (189)
+...+.++.-..+-|++.||+++||+-+|.++.+++
T Consensus 184 -------n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l 219 (292)
T KOG1681|consen 184 -------NQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL 219 (292)
T ss_pred -------chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH
Confidence 122334555567889999999999999999987654
No 129
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.95 E-value=0.0039 Score=58.28 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcc--CCCceecccCceEEEec
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag--~~~~R~~~p~s~~miH~ 85 (189)
+-||...+||||-... ..|--|.+..+-.++..+.....|..+++.|.++|.|.+.+++. ..+..++.|++.+.+-.
T Consensus 350 ~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~ 429 (512)
T TIGR01117 350 NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMG 429 (512)
T ss_pred CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecC
Confidence 5689999999993211 11112456677777788878889999999999999977655431 13567888888877755
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
|. + +..+. +.+++.+..+. .+. -.+++.+.. +.+.++..+.+.|+||.|+++.+-
T Consensus 430 pe-~-----a~~i~-~~~~l~~~~~~-~~~-------~~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~~t 484 (512)
T TIGR01117 430 PA-G-----AANII-FRKDIKEAKDP-AAT-------RKQKIAEYR--EEFANPYKAAARGYVDDVIEPKQT 484 (512)
T ss_pred HH-H-----HHHHH-hhhhcccccCH-HHH-------HHHHHHHHH--HhhcCHHHHHhcCCCCeeEChHHH
Confidence 54 1 11211 12222211100 000 011122221 236689999999999999997653
No 130
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.85 E-value=0.0046 Score=58.31 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred HHHHHhhcCCCeEEEEc-cccccHH-HHHHhccCCCceecc-------cCceEEEecccccccc--CChHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNC-GMAYGQA-AMLLSVGAKGYRGLQ-------PNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE 106 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~-G~aaS~a-~lIl~ag~~~~R~~~-------p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~ 106 (189)
++..|..++.||.+.+. |.|.+.| .-|.++|| .|++. ++++|.+-...++..- |-..-+
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L-------- 430 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAAD--RSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRL-------- 430 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHCC--hhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHh--------
Confidence 55667788999999996 9999999 88888884 79999 9998876444333221 212111
Q ss_pred HHHHHHHHHHHHh-cCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 107 ANAESYIELLAKG-TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 107 ~~~~~~~~~ya~~-tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
.++ .|.....-..++-.+..|+++||+++||||+|.++.
T Consensus 431 ----------~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 431 ----------ARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred ----------HHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 111 122111111112357789999999999999998865
No 131
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.81 E-value=0.017 Score=50.30 Aligned_cols=113 Identities=26% Similarity=0.355 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCCCCCccCCCccH--HHHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEE
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAE--TDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v--~~g~~Iyd~---i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~mi 83 (189)
+-||..+|+++|--..- |.. ..+-+|--- |-.++.||.++++|-..|.|++-+..|+ +.+|+.||++..
T Consensus 150 ~lPiitfIDT~GAypG~----~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySV 223 (317)
T COG0825 150 GLPIITFIDTPGAYPGI----GAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSV 223 (317)
T ss_pred CCCEEEEecCCCCCCCc----chhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeee
Confidence 36899999999921100 111 123333332 3456899999999999999999888884 779999999988
Q ss_pred eccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
=.|. + -++=|.+ +-.+ . .+..+.| -+|+.+-+++||||.|+...
T Consensus 224 isPE-G----~AsILWk---D~~k---------------a-~eAAe~m----kita~dLk~lgiID~II~Ep 267 (317)
T COG0825 224 ISPE-G----CASILWK---DASK---------------A-KEAAEAM----KITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred cChh-h----hhhhhhc---Chhh---------------h-HHHHHHc----CCCHHHHHhCCCcceeccCC
Confidence 7775 2 2222211 1111 0 1111112 26788889999999999874
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.92 E-value=0.011 Score=54.98 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccC--CCceecccCceEEEec
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA--KGYRGLQPNSSTKLYL 85 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~--~~~R~~~p~s~~miH~ 85 (189)
+-||...+|+||-... .-|--|-+..+-.+.+++.....|+.|+++|.+.|.|.+.+++.. .+..++.|++.+.+-.
T Consensus 329 ~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~ 408 (493)
T PF01039_consen 329 NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMG 408 (493)
T ss_dssp T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-
T ss_pred CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecC
Confidence 3589999999994422 233337788899999999999999999999999998886555431 2345667777666544
Q ss_pred cccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
|. + +..+. +.+++....+.=.+.-+. ..+.+.+.. +...++..|.+.|++|.|+++.+.
T Consensus 409 ~e-~-----a~~i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~a~~~~~D~ii~p~~t 467 (493)
T PF01039_consen 409 PE-G-----AASIL-YRDELEAAEAEGADPEAQ----RAEKIAEYE--DELSSPYRAASRGYVDDIIDPAET 467 (493)
T ss_dssp HH-H-----HHHHH-THHHHHHSCHCCHSHHHH----HHHHHHHHH--HHHSSHHHHHHTTSSSEESSGGGH
T ss_pred hh-h-----hheee-ehhhhhhhhcccchhHHH----HHHHHHHHH--HhcCCHHHHHhcCCCCCccCHHHH
Confidence 43 1 11211 111221111000000000 011111111 223588999999999999998654
No 133
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=95.08 E-value=0.038 Score=46.33 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 029701 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (189)
Q Consensus 38 Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya 117 (189)
+.+.|++++.||..-+.|.|+-+|+=+.+++| -..+.++|.|..--.-++.+..+ ..+. |.+.--+=+..|.
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCST-PGvA-----laRavpRkva~~M 188 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCST-PGVA-----LARAVPRKVAAYM 188 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecC-cchh-----HhhhcchhHHHHH
Confidence 56778999999999999999999998888885 45778888776421111212111 1221 2111112233444
Q ss_pred HhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 118 ~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
-.|| .-++++||+--|++.+|.+..+
T Consensus 189 L~Tg-------------~Pi~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 189 LMTG-------------LPITGEEALISGLVSKVVPAEE 214 (287)
T ss_pred HHhC-------------CCCchHHHHHhhhhhhcCCHHH
Confidence 4454 4568999999999999988754
No 134
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.87 E-value=0.32 Score=41.28 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHH----------hhcCCCeEEEEccccccHHHHHHhccCCCceec
Q 029701 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAM----------AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGL 75 (189)
Q Consensus 6 ~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i----------~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~ 75 (189)
+.+.+||.+.|++|| |.+ |.-+|.+.|...+ +...+||.+.+.|.|.|.|.+-..--+ ++-++
T Consensus 61 ~~~krpIv~lVD~~s-Qa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA-~rl~A 133 (234)
T PF06833_consen 61 SGPKRPIVALVDVPS-QAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQA-NRLIA 133 (234)
T ss_pred cCCCCCEEEEEeCCc-ccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHh-cchhc
Confidence 345789999999999 322 6666666665554 566799999999999999875432221 45577
Q ss_pred ccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcc--cHHHHHHcCCceEEeC
Q 029701 76 QPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYM--QAKEAIVYGLADKIID 153 (189)
Q Consensus 76 ~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~l--sa~EA~e~GliD~I~~ 153 (189)
+|.+ |+|-... ...|+-|.+|.|+++++-+..--| ..+-=...|.++++++
T Consensus 134 L~ga--~i~vM~~-------------------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 134 LPGA--MIHVMGK-------------------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred CCCC--eeecCCh-------------------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 7844 6664321 123556777788877776544333 4466677888888877
Q ss_pred C
Q 029701 154 S 154 (189)
Q Consensus 154 ~ 154 (189)
.
T Consensus 187 ~ 187 (234)
T PF06833_consen 187 G 187 (234)
T ss_pred c
Confidence 4
No 135
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=94.28 E-value=0.69 Score=40.42 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHHH-------HHHH---HhhcCCCeEEEEccccccHHHHHHhccCCCceecccC
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAYA-------IADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~~-------Iyd~---i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
.-|+.+...|+| ....+|.. +... +.....|..+++.|-+++.++..++... +-.++.|+
T Consensus 156 ~lPlV~l~dsgG---------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia~p~ 225 (292)
T PRK05654 156 KCPLVIFSASGG---------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIAEPK 225 (292)
T ss_pred CCCEEEEEcCCC---------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEEecC
Confidence 458888889999 55555442 1222 3334689999999999998887766532 46778888
Q ss_pred ceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 79 SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 79 s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
+.+.+--|. -++ .-++ +++. +-+-+++-+.+.|+||.|++..+-
T Consensus 226 A~ig~aGpr---------vie------------------~~~~---e~lp-----e~~~~ae~~~~~G~vD~Vv~~~e~ 269 (292)
T PRK05654 226 ALIGFAGPR---------VIE------------------QTVR---EKLP-----EGFQRAEFLLEHGAIDMIVHRREL 269 (292)
T ss_pred cEEEecCHH---------HHH------------------hhhh---hhhh-----hhhcCHHHHHhCCCCcEEECHHHH
Confidence 866653331 110 0011 1111 114467778899999999987553
No 136
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=94.24 E-value=0.6 Score=40.67 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHHHH-------H---HHHhhcCCCeEEEEccccccHHHHHHh-ccCCCceeccc
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAYAI-------A---DAMAYCKSKVYTVNCGMAYGQAAMLLS-VGAKGYRGLQP 77 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~~I-------y---d~i~~~~~~V~t~~~G~aaS~a~lIl~-ag~~~~R~~~p 77 (189)
.-|+.+..+|+| ....+|... . ..+.....|..+++.|-+++.++..++ .+ +-.++.|
T Consensus 155 ~lPlV~l~dSgG---------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p 223 (285)
T TIGR00515 155 NCPLIIFSASGG---------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEP 223 (285)
T ss_pred CCCEEEEEcCCC---------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEEC
Confidence 468899999999 444444322 2 223334689999999999998877775 45 4678888
Q ss_pred CceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchH
Q 029701 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (189)
++.+.+--|. + +..-++ +++ . +-+-+|+-+.+.|+||.|++..+.
T Consensus 224 ~A~ig~aGpr----------V-----------------ie~ti~---e~l----p-e~~q~ae~~~~~G~vD~iv~~~~~ 268 (285)
T TIGR00515 224 KALIGFAGPR----------V-----------------IEQTVR---EKL----P-EGFQTSEFLLEHGAIDMIVHRPEM 268 (285)
T ss_pred CeEEEcCCHH----------H-----------------HHHHhc---Ccc----c-hhcCCHHHHHhCCCCcEEECcHHH
Confidence 8866653221 1 111122 111 1 336678888899999999987654
No 137
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=91.67 E-value=0.54 Score=40.47 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=77.1
Q ss_pred eEEEEcCCCCCCCccCCCccH--------HH-------HHH----HHHHHhhcCCCeEEEEccccccHHHHHHhccCCCc
Q 029701 12 IYLYINSSGTQNEKKESVGAE--------TD-------AYA----IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGY 72 (189)
Q Consensus 12 I~l~INSpG~~~~~~~~~G~v--------~~-------g~~----Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~ 72 (189)
....+.|.|.-.++|..+... .+ ... ..+.+-.++.|+.+.+.|-|-+.++.|+.-+| -
T Consensus 54 ~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~ 131 (266)
T KOG0016|consen 54 SITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCD--Y 131 (266)
T ss_pred EEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhh--e
Confidence 666778888666665555222 11 112 56777788999999999999999999998885 4
Q ss_pred eecccCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEe
Q 029701 73 RGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (189)
Q Consensus 73 R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (189)
.++. -..-+|.|.. .-|+..|--... . +-+.. ....-.++|--..-|+|+||.++|||++|.
T Consensus 132 V~A~--Dka~F~TPfa--~lGq~PEG~Ss~--t----------~p~im--G~~~A~E~ll~~~kltA~Ea~~~glVskif 193 (266)
T KOG0016|consen 132 VWAS--DKAWFQTPFA--KLGQSPEGCSSV--T----------LPKIM--GSASANEMLLFGEKLTAQEACEKGLVSKIF 193 (266)
T ss_pred EEec--cceEEeccch--hcCCCCCcceee--e----------ehHhh--chhhHHHHHHhCCcccHHHHHhcCchhhhc
Confidence 5665 4446777873 223322210000 0 00000 112223444446779999999999999999
Q ss_pred CCc
Q 029701 153 DSQ 155 (189)
Q Consensus 153 ~~~ 155 (189)
...
T Consensus 194 ~~~ 196 (266)
T KOG0016|consen 194 PAE 196 (266)
T ss_pred ChH
Confidence 874
No 138
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.18 E-value=0.73 Score=43.37 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccc
Q 029701 10 KPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (189)
Q Consensus 10 ~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~ 88 (189)
=||....|.||.... +-|-.|-+..|--|+.++-....|..|++.|.+++.|...+++.. + +..+++-.|..
T Consensus 360 iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~------~-~~~~~~AwP~a 432 (526)
T COG4799 360 IPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKA------L-GPDFNYAWPTA 432 (526)
T ss_pred CCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCcc------C-CCceeEecCcc
Confidence 588999999995533 445558899999999999999999999999999999986544431 1 14556555541
Q ss_pred c-cccCChHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHHhh
Q 029701 89 G-RSSGPVTDMW-RKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (189)
Q Consensus 89 ~-~~~G~~~dl~-~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (189)
- .+-|-..-.. .+.+++....+. .++.-...+.+.+. -+..+-++--|-+.|+||.|+++.+....
T Consensus 433 ~iaVMG~egAv~i~~~k~l~~~~~~-----~~~~~~~~~~~~~e-Y~~~~~~p~~aa~r~~iD~vI~p~~tR~~ 500 (526)
T COG4799 433 EIAVMGPEGAVSILYRKELAAAERP-----EEREALLRKQLIAE-YEEQFSNPYYAAERGYIDAVIDPADTRAV 500 (526)
T ss_pred eeeecCHHHHHHHHHHHHhhcccCc-----hhHHHHHHHHHHHH-HHHhccchHHHHHhCCCCcccCHHHHHHH
Confidence 0 1112111111 122333332221 00000000111111 12344566678889999999998765433
No 139
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=89.95 E-value=0.41 Score=40.61 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEeccccccccC-C-hHHHHHHHHHHHHHHHHH
Q 029701 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG-P-VTDMWRKAKDLEANAESY 112 (189)
Q Consensus 35 g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~~~~~G-~-~~dl~~~~~~l~~~~~~~ 112 (189)
.+.+--.|+.++.||.+.+.|.|.+.|-.+-+.|+- -++..|+.|----|.++++-| - +..|.
T Consensus 105 vLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla------------- 169 (282)
T COG0447 105 VLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA------------- 169 (282)
T ss_pred hhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH-------------
Confidence 344455788999999999999999999888777863 477888888877787654422 1 22221
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCc
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (189)
+.-|+ ++-++.+---+..+|+||++.|+|+.|....
T Consensus 170 -----r~VGq--KkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 170 -----RIVGQ--KKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred -----HHhhh--hhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 11121 1112223334557999999999999998764
No 140
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=89.93 E-value=1.2 Score=38.71 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCCCCCccCCCccHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhccCCCceecccC
Q 029701 10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 10 ~~I~l~INSpG~~~~~~~~~G~v~~g~-------~Iyd~i~~~~--~~V~t~~~G~--aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
-|+.+.+.|.| +.+.+|. .++..+...+ .|+.+++.|- |++.++++.+.+ +..+|.|.
T Consensus 100 ~PvV~l~dSgG---------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~ 168 (274)
T TIGR03133 100 TAVVLLLDTGG---------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEE 168 (274)
T ss_pred CCEEEEEcCCC---------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCC
Confidence 48999999999 5555543 2332332222 7999999999 788888777777 46788888
Q ss_pred ceEEEecc
Q 029701 79 SSTKLYLP 86 (189)
Q Consensus 79 s~~miH~p 86 (189)
+++.+--|
T Consensus 169 a~i~~aGP 176 (274)
T TIGR03133 169 GRLGLSGP 176 (274)
T ss_pred cEEeccCH
Confidence 87766544
No 141
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=89.54 E-value=1.1 Score=39.50 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCCCCCccCCCccHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhccCCCceecccC
Q 029701 10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 10 ~~I~l~INSpG~~~~~~~~~G~v~~g~-------~Iyd~i~~~~--~~V~t~~~G~--aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
-|+.+.+.|.| +.+.+|. .++..+..++ .|+.+++.|- |++.++++.+.+ +..+|.++
T Consensus 109 ~PvV~l~dSGG---------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~ 177 (301)
T PRK07189 109 TAVLLLFETGG---------VRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEE 177 (301)
T ss_pred CCEEEEecCCC---------cCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECC
Confidence 68999999999 4443322 2333333233 8999999998 889888887777 47889999
Q ss_pred ceEEEeccc
Q 029701 79 SSTKLYLPV 87 (189)
Q Consensus 79 s~~miH~p~ 87 (189)
+.+.+--|.
T Consensus 178 a~iglaGP~ 186 (301)
T PRK07189 178 GRLGLSGPE 186 (301)
T ss_pred cEEeccCHH
Confidence 887775553
No 142
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=83.72 E-value=2.9 Score=35.52 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccc---ccccCChHHHHHHHHHHHHHH
Q 029701 33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---GRSSGPVTDMWRKAKDLEANA 109 (189)
Q Consensus 33 ~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~---~~~~G~~~dl~~~~~~l~~~~ 109 (189)
..=..+++.|..++.||.+-+.|.|.+.|-=+.++|| -|.+..++.+.+-.-.. .+..|+ .-|.+
T Consensus 111 ~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGt-QRLpR--------- 178 (291)
T KOG1679|consen 111 NGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-QRLPR--------- 178 (291)
T ss_pred HHHHHHHHHHHhCCccceehhcchhcccchhhhhhcc--ceehhhhccccccccceeeecCCCcc-chhHH---------
Confidence 3344677888899999999999999999999999995 78998888876644321 223342 22211
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCch
Q 029701 110 ESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 110 ~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (189)
.+- ...-++++...+-|++.||...|+|+.+++..+
T Consensus 179 -~vg----------~alaKELIftarvl~g~eA~~lGlVnhvv~qne 214 (291)
T KOG1679|consen 179 -IVG----------VALAKELIFTARVLNGAEAAKLGLVNHVVEQNE 214 (291)
T ss_pred -HHh----------HHHHHhHhhhheeccchhHHhcchHHHHHhcCc
Confidence 111 111234566678899999999999999988654
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=61.12 E-value=24 Score=33.21 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHH--------HHHHHH-hhcCCCeEEEEccccccHHHHHHhccCCCceecccCc
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAY--------AIADAM-AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~--------~Iyd~i-~~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s 79 (189)
.-|+..++.|.| +.+.++. ..+... .+-..|..+++.|-|++.+++.++.+| ..+|.+++
T Consensus 117 ~lPlV~l~dSgG---------arm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D--~vim~~~~ 185 (512)
T TIGR01117 117 GAPVVGLNDSGG---------ARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTD--FIYMVDNT 185 (512)
T ss_pred CCCEEEEecCCC---------CCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhcC--ceEEeccc
Confidence 468888889988 3332221 122222 233579999999999999999988884 78999975
Q ss_pred -eEEEeccc
Q 029701 80 -STKLYLPV 87 (189)
Q Consensus 80 -~~miH~p~ 87 (189)
.+.+--|.
T Consensus 186 a~i~~aGP~ 194 (512)
T TIGR01117 186 SQMFITGPQ 194 (512)
T ss_pred eEEEecChH
Confidence 46555443
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=59.19 E-value=39 Score=32.31 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCCC-CCccCCCccHHHHHHHH-HHHhh--cCCCeEEEEccccccHHHHHHhccCCCceeccc-CceEEE
Q 029701 9 SKPIYLYINSSGTQ-NEKKESVGAETDAYAIA-DAMAY--CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKL 83 (189)
Q Consensus 9 ~~~I~l~INSpG~~-~~~~~~~G~v~~g~~Iy-d~i~~--~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p-~s~~mi 83 (189)
.-||...++|+|.. ....+.++.....-.|+ +.-+. ...|..+++.|.|++.++++.+.++ ..+|.+ ++.+.+
T Consensus 164 ~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D--~vim~~~~a~i~~ 241 (569)
T PLN02820 164 RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMAD--ESVIVKGNGTIFL 241 (569)
T ss_pred CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCC--ceEEecCCcEEEe
Confidence 46899999999932 11112222111111233 33332 3479999999999999998887774 556654 676666
Q ss_pred ecc
Q 029701 84 YLP 86 (189)
Q Consensus 84 H~p 86 (189)
--|
T Consensus 242 aGP 244 (569)
T PLN02820 242 AGP 244 (569)
T ss_pred cCH
Confidence 555
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=55.73 E-value=24 Score=32.85 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCCCCCccCCCc--cHHHHHH-------HHHHHh--hcCCCeEEEEccccccHHHHHHhccCCCceecccC
Q 029701 10 KPIYLYINSSGTQNEKKESVG--AETDAYA-------IADAMA--YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (189)
Q Consensus 10 ~~I~l~INSpG~~~~~~~~~G--~v~~g~~-------Iyd~i~--~~~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~ 78 (189)
-|+..+++|.| + .+.+|+. ++..+. +-..|+.+++.|.|.+.++++...++ ..++.+.
T Consensus 93 ~P~v~l~dsgG---------a~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~d--~~i~~~~ 161 (493)
T PF01039_consen 93 LPLVYLVDSGG---------AFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALSD--FVIMVKG 161 (493)
T ss_dssp EEEEEEEEESS---------BCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHSS--EEEEETT
T ss_pred CCcEEeccccc---------cccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhcccccC--ccccCcc
Confidence 46777888888 4 3333332 222221 22689999999999999988888874 6677776
Q ss_pred -ceEEEeccc
Q 029701 79 -SSTKLYLPV 87 (189)
Q Consensus 79 -s~~miH~p~ 87 (189)
+.+.+.-|.
T Consensus 162 ~a~i~l~GP~ 171 (493)
T PF01039_consen 162 TARIFLAGPR 171 (493)
T ss_dssp TCEEESSTHH
T ss_pred ceEEEecccc
Confidence 777665543
No 146
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=53.96 E-value=44 Score=29.39 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHH-----------HHHHHHhhcCCCeEEEEccccccHHHHHHhc-cCCCceecc
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAY-----------AIADAMAYCKSKVYTVNCGMAYGQAAMLLSV-GAKGYRGLQ 76 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~-----------~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~a-g~~~~R~~~ 76 (189)
.-|+.+...|.| +.+.+|+ ++....+.-..|..+++.|-+++.++..++. || -.++-
T Consensus 168 rlPlV~l~~SGG---------ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~D--iiiae 236 (296)
T CHL00174 168 SLPLIIVCASGG---------ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLGD--IIIAE 236 (296)
T ss_pred CCCEEEEECCCC---------ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHccc--EEEEe
Confidence 458888889988 4433333 1222222456899999999988888887765 74 56677
Q ss_pred cCceEEEe
Q 029701 77 PNSSTKLY 84 (189)
Q Consensus 77 p~s~~miH 84 (189)
|+|.+.+-
T Consensus 237 ~~A~IgfA 244 (296)
T CHL00174 237 PNAYIAFA 244 (296)
T ss_pred CCeEEEee
Confidence 77765553
No 147
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=49.54 E-value=36 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHH
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
.+-+++.+|.+...|..++......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 45689999999999999999988899888765
No 148
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=45.62 E-value=13 Score=22.99 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.5
Q ss_pred cCCCcccHHHHHHcCCceE
Q 029701 132 QRPKYMQAKEAIVYGLADK 150 (189)
Q Consensus 132 ~~~~~lsa~EA~e~GliD~ 150 (189)
..+..|+-+||++.||||+
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4567899999999999995
No 149
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=44.78 E-value=53 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcCCCcccHH
Q 029701 111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAK 140 (189)
Q Consensus 111 ~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~ 140 (189)
.+.+.+++.+|.+..++.+++..+ .+|++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~~ 73 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTAD 73 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCccc
Confidence 356789999999999999998866 44443
No 150
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=43.97 E-value=60 Score=19.77 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHH
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
..-+|+++|.+...|.++.....-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 56789999999999999987766666665543
No 151
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=42.22 E-value=41 Score=22.57 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcCC-CcccHHHHHH
Q 029701 111 SYIELLAKGTGKPKEEIAKDIQRP-KYMQAKEAIV 144 (189)
Q Consensus 111 ~~~~~ya~~tg~~~e~i~~~~~~~-~~lsa~EA~e 144 (189)
.+..-+-++||++++++.+.++.. -.....|.++
T Consensus 4 sy~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~v~ 38 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWLALAREGGPLTKHGEIVA 38 (61)
T ss_pred HHHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHHHH
Confidence 455567889999999998888765 5555555543
No 152
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=40.65 E-value=1.3e+02 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHH
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEA 142 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 142 (189)
.+.+++.+|.+.+.++..+....|.+..+.
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 467888899999999999988888887664
No 153
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=40.49 E-value=47 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCC-CHHHHHHhhcCCCcccHHHHHH
Q 029701 111 SYIELLAKGTGK-PKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 111 ~~~~~ya~~tg~-~~e~i~~~~~~~~~lsa~EA~e 144 (189)
.+++-+.+-+|. |.++|..++. +-.|+|.||++
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~q 40 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQ 40 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHH
Confidence 455566677777 8888877654 77788888876
No 154
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=39.32 E-value=22 Score=30.46 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=22.2
Q ss_pred CceEEeCCchHHhhhhchHH-HHHHHHHHHhhcCCCCCCC
Q 029701 147 LADKIIDSQDAAYEKRDYDM-MLAQQMSMEREAGGPQAAP 185 (189)
Q Consensus 147 liD~I~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 185 (189)
|+|+|..+....++...+++ |-.+. +|...|.++++|
T Consensus 190 LaDEisPDs~R~Wd~~t~~~~~DKd~--~R~~~g~~~~~y 227 (247)
T COG0152 190 LADEISPDSCRLWDAETYEKSLDKDF--FRRDLGDLPELY 227 (247)
T ss_pred EEeeeCCCccccccccccccccchHH--HhhcCCCccccH
Confidence 68899855556677777775 43333 333445555544
No 155
>PRK09726 antitoxin HipB; Provisional
Probab=39.12 E-value=88 Score=21.77 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHH
Q 029701 94 PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEA 142 (189)
Q Consensus 94 ~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 142 (189)
+...+....+.+.+.+..-..-+|+++|.+...|.++.......+.+..
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l 57 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTF 57 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHH
Confidence 3455555555555544444678999999999999999887666666543
No 156
>smart00250 PLEC Plectin repeat.
Probab=38.97 E-value=25 Score=20.85 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCCcccHHHHHHcCCceEE
Q 029701 133 RPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 133 ~~~~lsa~EA~e~GliD~I 151 (189)
...-||-.||++-|+||..
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4667999999999999964
No 157
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=38.94 E-value=23 Score=27.91 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEEeCCchHHhh-hhchHHHHHHHHHHHhhcCCCCCCCCCC
Q 029701 110 ESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE-KRDYDMMLAQQMSMEREAGGPQAAPSGF 188 (189)
Q Consensus 110 ~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
..+++..++.||++.+++...+.+. |+ .-+.+.|.-.-+.....+..+ ..+.+++-..+...+ |.+.||.|
T Consensus 49 ~~lv~a~a~~~g~~~~~~l~~fG~~-~~--~~~~~~~~~~~l~~~g~~~~~FL~~ld~iH~~v~~~~-----p~~~~P~f 120 (171)
T PF07700_consen 49 YKLVEAAAEVTGISVEELLEEFGEY-FF--DFLSESGYERLLRFLGRDLFDFLNNLDNIHEEVRKLY-----PDAKPPSF 120 (171)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHH-HH--HHHHHHCCHHHHHCTCSSHHHHHHHHHHHHHHHHHHS-----TTSS--EE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-HH--HHHHHhCcHHHHHhcCCCHHHHHHhHHHHHHHHHHhC-----CCCcCCeE
Confidence 3677889999999999998888743 22 233333332111111122222 123344555555555 77778876
Q ss_pred C
Q 029701 189 R 189 (189)
Q Consensus 189 ~ 189 (189)
+
T Consensus 121 ~ 121 (171)
T PF07700_consen 121 R 121 (171)
T ss_dssp E
T ss_pred E
Confidence 4
No 158
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=37.25 E-value=62 Score=27.71 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=31.9
Q ss_pred CHHHHHHhhcCCCc---------ccHHHHHH----cCCceEEeCCchHHhhhhchHHHHHHHHHHH
Q 029701 123 PKEEIAKDIQRPKY---------MQAKEAIV----YGLADKIIDSQDAAYEKRDYDMMLAQQMSME 175 (189)
Q Consensus 123 ~~e~i~~~~~~~~~---------lsa~EA~e----~GliD~I~~~~~~~~~~~~~~~~~~~~~~~~ 175 (189)
+.+.+...++++.| ||++||++ || .|+++-+...-....|.-.+|..+-.+.
T Consensus 166 N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~-~~r~ilnSD~~s~~sd~lavprtal~m~ 230 (254)
T COG1099 166 NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYG-AERIILNSDAGSAASDPLAVPRTALEME 230 (254)
T ss_pred cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhC-cceEEEecccccccccchhhhHHHHHHH
Confidence 35556666666665 89999964 89 8887765433233444455555555444
No 159
>PF08573 SAE2: DNA repair protein endonuclease SAE2/CtIP C-terminus; InterPro: IPR013882 SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling [, ]. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein []. It is now known to be an endonuclease. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions [].
Probab=34.26 E-value=22 Score=25.65 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=9.1
Q ss_pred CCCCCCCCCC
Q 029701 179 GGPQAAPSGF 188 (189)
Q Consensus 179 ~~~~~~~~~~ 188 (189)
-.||.|||||
T Consensus 77 ~~rp~TPpGf 86 (93)
T PF08573_consen 77 YARPSTPPGF 86 (93)
T ss_pred CCCCCCCCCC
Confidence 6899999998
No 160
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=33.14 E-value=1.5e+02 Score=28.01 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCCCCC-ccCCCccHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhccC---CCceecccCceEE
Q 029701 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA---KGYRGLQPNSSTK 82 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~-~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aaS~a~lIl~ag~---~~~R~~~p~s~~m 82 (189)
.=|+.+.-|++|-... +-|.-|-...|--+.++....+.|..|+..|-+.+ |..= +++. .+--|+-|+|.+-
T Consensus 384 ~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~-m~sr~~~gd~~yawP~A~Ia 459 (536)
T KOG0540|consen 384 NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA-MCSRGYSGDINYAWPNARIA 459 (536)
T ss_pred CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc-ccccccCCceeEEcccceee
Confidence 3578888999994432 33444777788888888888899999999999988 4433 3331 1223445555444
No 161
>PHA00099 minor capsid protein
Probab=31.63 E-value=2.5e+02 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.4
Q ss_pred HHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCc
Q 029701 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLA 148 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~Gli 148 (189)
.-+.++.|.+++++.++++++. +-+||+.+||+
T Consensus 82 A~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 82 AKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred HHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 3467788999999999998765 45899999998
No 162
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.76 E-value=1.8e+02 Score=23.64 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEcccc
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMA 57 (189)
Q Consensus 5 ~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~a 57 (189)
.....++|.+.+.|+|.- +-.....+...++..+..|.++++|-.
T Consensus 103 ~~~~~~rivi~v~S~~~~--------d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 103 NKNQKQRIVAFVGSPIEE--------DEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred CcCCcceEEEEEecCCcC--------CHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 333446899999999831 122333566667777889999999865
No 163
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=28.45 E-value=96 Score=27.21 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=39.0
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccccc
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAY 58 (189)
Q Consensus 2 yL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~aa 58 (189)
||..+..++-|-||+-+.| -.+.++....+..+. .+||..+..|...
T Consensus 199 yl~~Dp~T~~I~ly~E~~G---------~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 199 KFVKDPQTEGIILIGEIGG---------TAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred HHhhCCCCcEEEEEeccCC---------chHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 6677788899999999988 777788888887654 8999999998775
No 164
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=27.33 E-value=1.6e+02 Score=20.09 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHhhcCCCcccHHHHHH
Q 029701 108 NAESYIELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 108 ~~~~~~~~ya~~t-g~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
+-+...+.+|... |+|.++|.+.+.=..-++++|.-+
T Consensus 31 L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 31 LLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 3444555556554 899999999998666788877543
No 165
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=26.77 E-value=1.3e+02 Score=26.51 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhcCCCcc-cHHHHHHc
Q 029701 110 ESYIELLAKGTGKPKEEIAKDIQRPKYM-QAKEAIVY 145 (189)
Q Consensus 110 ~~~~~~ya~~tg~~~e~i~~~~~~~~~l-sa~EA~e~ 145 (189)
+...+++++.+|.+.+.+.+.+.+..|+ ++++.+.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAF 262 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhh
Confidence 4577899999999999999999988875 66677664
No 166
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=26.57 E-value=92 Score=23.22 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcC
Q 029701 103 KDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYG 146 (189)
Q Consensus 103 ~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~G 146 (189)
+++.+-...=..-+|+..|.+...|.+++...+-+|++-|+.++
T Consensus 16 eeflep~glt~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 16 EEFLEPLGLTQTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHhccccCCHHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 34443333445678888999999999999999999999998865
No 167
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=26.56 E-value=1.6e+02 Score=18.61 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHhhcCC-CcccHHHH
Q 029701 105 LEANAESYIELLAKGTGKPKEEIAKDIQRP-KYMQAKEA 142 (189)
Q Consensus 105 l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~-~~lsa~EA 142 (189)
+...+..=..-+|+.+|.+...+..+.... ..++.+..
T Consensus 5 ~m~~~~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~l 43 (63)
T PF13443_consen 5 LMAERGITQKDLARKTGISRSTLSRILNGKPSNPSLDTL 43 (63)
T ss_dssp HHHHTT--HHHHHHHHT--HHHHHHHHTTT-----HHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhcccccccHHHH
Confidence 333333344568899999999999998876 45665543
No 168
>PRK02866 cyanate hydratase; Validated
Probab=24.46 E-value=1.6e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHc
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVY 145 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~ 145 (189)
-+-+|+.+|+|+..+...+..-.-+++++|...
T Consensus 21 w~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 21 WADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 367899999999999999999999999999875
No 169
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=24.15 E-value=2e+02 Score=18.19 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCHHHHHHhhcCCCcccHHHHHH
Q 029701 111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 111 ~~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
.=..-+|+.+|.+...+..+....+.++...++.
T Consensus 13 lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~ 46 (64)
T PF12844_consen 13 LTQKDLAEKLGISRSTISKIENGKRKPSVSTLKK 46 (64)
T ss_dssp --HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHH
Confidence 3455688889999999999988887777766643
No 170
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=23.84 E-value=2.1e+02 Score=24.68 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHhhcC-CCeEEEEccccccHHHHHHhccCCCceecccCceEEEecccc
Q 029701 30 GAETDAYAIADAMAYCK-SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (189)
Q Consensus 30 G~v~~g~~Iyd~i~~~~-~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~~ 88 (189)
+...+..+.|+.|+... .+-..+..|...+++..+-+|+. .|-+-+-+|.|..
T Consensus 110 n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr------~~~~alVL~SPf~ 163 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASR------YPLAAVVLHSPFT 163 (258)
T ss_pred cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhc------CCcceEEEeccch
Confidence 78899999999999777 46666678888888887777762 1345677888874
No 171
>PHA01976 helix-turn-helix protein
Probab=23.09 E-value=1.9e+02 Score=18.46 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCHHHHHHhhcCCCcccHHHH
Q 029701 112 YIELLAKGTGKPKEEIAKDIQRPKYMQAKEA 142 (189)
Q Consensus 112 ~~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA 142 (189)
=..-+|+++|.+...|.++.......+.+..
T Consensus 17 t~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l 47 (67)
T PHA01976 17 SAPELSRRAGVRHSLIYDFEADKRLPNLKTL 47 (67)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Confidence 3457888999999888888776655554443
No 172
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=22.58 E-value=1.6e+02 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHH
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
..-+|+++|.+...|..++.....++.+.+..
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~ 52 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMALR 52 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45789999999999999988777778776653
No 173
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=22.27 E-value=2.9e+02 Score=22.10 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCCeEEEE-cCCCCCCCccCCCccHHHHHHHHHHHhh--------------------------cCCCeEEEEccccccHH
Q 029701 9 SKPIYLYI-NSSGTQNEKKESVGAETDAYAIADAMAY--------------------------CKSKVYTVNCGMAYGQA 61 (189)
Q Consensus 9 ~~~I~l~I-NSpG~~~~~~~~~G~v~~g~~Iyd~i~~--------------------------~~~~V~t~~~G~aaS~a 61 (189)
.+.+.|-+ +-+| |++..+..+.+.+-. ...||...+.+..+|+|
T Consensus 89 ~~~lIiDLR~N~G---------G~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaa 159 (224)
T cd06567 89 VKGLILDLRNNPG---------GLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVVLVNEGSASAS 159 (224)
T ss_pred CCEEEEEcCCCCC---------ccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEEEECCCCccHH
Confidence 45566666 4567 899999999988853 13578888888888888
Q ss_pred HHHHhcc
Q 029701 62 AMLLSVG 68 (189)
Q Consensus 62 ~lIl~ag 68 (189)
-++..+=
T Consensus 160 E~~a~~l 166 (224)
T cd06567 160 EIFAGAL 166 (224)
T ss_pred HHHHHHH
Confidence 8776654
No 174
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=21.67 E-value=1.3e+02 Score=23.18 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=24.6
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcC--CCeEEEEccc
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGM 56 (189)
Q Consensus 2 yL~~~~~~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~--~~V~t~~~G~ 56 (189)
||..++..+-|-+||.+-+ ++-....+++... +||..+-.|.
T Consensus 48 ~~~~D~~t~~I~ly~E~~~-------------d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 48 YLAEDPDTRVIVLYLEGIG-------------DGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp HHCT-SS--EEEEEES--S--------------HHHHHHHHHHHCCCS-EEEEE---
T ss_pred HHhcCCCCCEEEEEccCCC-------------CHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5677777889999999877 3566677776554 8999888886
No 175
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=21.58 E-value=1.2e+02 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcC
Q 029701 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYG 146 (189)
Q Consensus 113 ~~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~G 146 (189)
-+-+|+++|+++.-+...+.+-..+++++|...+
T Consensus 24 we~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla 57 (150)
T TIGR00673 24 FADIADGLGLAEVFVAAALYGQAAAPADEARLVG 57 (150)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4578999999999999999999999999998753
No 176
>PRK07857 hypothetical protein; Provisional
Probab=21.40 E-value=1.7e+02 Score=21.84 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhh
Q 029701 95 VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI 131 (189)
Q Consensus 95 ~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 131 (189)
..++....++++.+++.+++.+++|.....+.-+-..
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~ 63 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARM 63 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677888999999999999999987665443333
No 177
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=21.39 E-value=3.6e+02 Score=20.23 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHHhcCCCHHHHHHhhcCCCcccHHHHHHcCCceEE
Q 029701 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e~GliD~I 151 (189)
.-+.++.|.+++++.++++++.- -+|++..||.|.-
T Consensus 52 AkvRe~FgNdPeeml~~L~d~~n--yde~~algll~~e 87 (114)
T TIGR02763 52 AKVRENFGNDPEEMLSWLEDEAN--YDEVEALGLLDPE 87 (114)
T ss_pred HHHHHHhCCCHHHHHHHHhChhh--HHHHHHhcccccc
Confidence 34667889999999999876542 3678899998864
No 178
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=21.36 E-value=1.4e+02 Score=17.98 Aligned_cols=18 Identities=39% Similarity=0.448 Sum_probs=13.4
Q ss_pred HHHHHhcCCCHHHHHHhh
Q 029701 114 ELLAKGTGKPKEEIAKDI 131 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~ 131 (189)
..+++.||++..+|..++
T Consensus 17 ~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 17 EELAKQTGLSRKQISNWF 34 (40)
T ss_dssp HHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 347888999999988764
No 179
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=21.27 E-value=6.3e+02 Score=22.96 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEE--ccccccHHHHHHhccCCCceecccCceEEEeccc
Q 029701 11 PIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVN--CGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (189)
Q Consensus 11 ~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~--~G~aaS~a~lIl~ag~~~~R~~~p~s~~miH~p~ 87 (189)
.+.+-.=-.|+.++ ||..+|+++..+| .+||.-+| .|.|.|.-+-=---|| | ++.+.--..||...
T Consensus 217 ac~V~yfGdG~aSE-----GD~HA~~NfAAtl---e~Pvif~CRNNG~AISTptseQyr~D-G--Ia~kG~aYGi~sIR 284 (432)
T KOG1182|consen 217 ACAVTYFGDGAASE-----GDAHAAFNFAATL---ECPVIFFCRNNGWAISTPTSEQYRGD-G--IAVKGPAYGIRSIR 284 (432)
T ss_pred eEEEEEecCCcccc-----cchhhhhhHHHHh---CCCEEEEEcCCCeeeccccHHHhcCC-c--eEEeccccceEEEE
Confidence 45554445555555 9999999988887 67888777 6788777653333333 2 45555556676654
No 180
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=20.92 E-value=1.9e+02 Score=24.72 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccc
Q 029701 11 PIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGM 56 (189)
Q Consensus 11 ~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~ 56 (189)
.|.+.++.+| +|.+..+++|.+.|+. .++|.-++.|.
T Consensus 1 ril~~~~g~G--------~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 1 KILYSVCGEG--------FGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred CEEEEEeccC--------ccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 3678889999 4899999999999998 88887776665
No 181
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=20.74 E-value=1.7e+02 Score=23.04 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=26.7
Q ss_pred EEEcCCCCCCCccCCCccHHHHHHHHHHHhhcCCCeEEEEccc
Q 029701 14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGM 56 (189)
Q Consensus 14 l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~~~~V~t~~~G~ 56 (189)
|.|| || +......+|.|+|+....|+.=|=+..
T Consensus 70 IvIN-pg---------a~THTSvAlrDAi~av~iP~vEVHlSN 102 (146)
T COG0757 70 IVIN-PG---------AYTHTSVALRDAIAAVSIPVVEVHLSN 102 (146)
T ss_pred EEEc-Cc---------cchhhHHHHHHHHHhcCCCEEEEEecC
Confidence 7777 67 788899999999999999877665543
No 182
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=20.61 E-value=1.5e+02 Score=28.16 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCCCCCccCCCccHHHHHHHHHHHhhc-CCCeEEEEccccccHHHHHHhccCCCceecccC-ceEEEecc
Q 029701 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC-KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLP 86 (189)
Q Consensus 9 ~~~I~l~INSpG~~~~~~~~~G~v~~g~~Iyd~i~~~-~~~V~t~~~G~aaS~a~lIl~ag~~~~R~~~p~-s~~miH~p 86 (189)
..|+....+|.| .+.......--..|.--|+..+.+ -.|..+++.|-|++.|+++...++ .-+|.++ +.+.|--|
T Consensus 126 g~P~i~l~dsgG-ari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D--~~imv~~~~~mfltGP 202 (526)
T COG4799 126 GLPVIGLNDSGG-ARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTD--FVIMVRDQSYMFLTGP 202 (526)
T ss_pred CCCEEEEEcccc-cccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccccccccc--eEEEEcCCccEEeeCH
Confidence 356666667766 221111111111144445555533 379999999999999998888884 5677777 44444333
No 183
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=20.56 E-value=1.8e+02 Score=16.43 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHhcCCCHHHHHHhhcCCCcccHHHHHH
Q 029701 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (189)
Q Consensus 114 ~~ya~~tg~~~e~i~~~~~~~~~lsa~EA~e 144 (189)
.-+++.+|.+...+.+++....-++...+..
T Consensus 16 ~~~a~~~~~~~~~v~~~~~g~~~~~~~~~~~ 46 (58)
T cd00093 16 EELAEKLGVSRSTISRIENGKRNPSLETLEK 46 (58)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 4678888999988888887766666666544
No 184
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=20.39 E-value=83 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.7
Q ss_pred CHHHHHHhhcCCCcccHHHHHHc
Q 029701 123 PKEEIAKDIQRPKYMQAKEAIVY 145 (189)
Q Consensus 123 ~~e~i~~~~~~~~~lsa~EA~e~ 145 (189)
++++|.+......|||++|..+|
T Consensus 28 n~~ei~ekygd~lFLT~eE~r~Y 50 (97)
T PF04033_consen 28 NPEEIIEKYGDRLFLTKEELRKY 50 (97)
T ss_dssp -THHHHHHTSTTBSS-HHHHHHH
T ss_pred CHHHHHHHhCcceecCHHHHHHH
Confidence 45667777778889999998877
No 185
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=20.17 E-value=3e+02 Score=22.24 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=34.3
Q ss_pred CHHHHHHhhcCCCcccHHHH---------HHcCCceEEeCCchHH---hhhhchHHHHHHHHHHHhhcCCCCCCCCCC
Q 029701 123 PKEEIAKDIQRPKYMQAKEA---------IVYGLADKIIDSQDAA---YEKRDYDMMLAQQMSMEREAGGPQAAPSGF 188 (189)
Q Consensus 123 ~~e~i~~~~~~~~~lsa~EA---------~e~GliD~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
+...+....+-+ |++-+| +-||.+|.=+-....+ ...+.-..+-..+-.|.......-.+||||
T Consensus 67 pa~r~~sa~~aG--F~~v~ArrlAGs~erv~yG~~d~pi~~~~~~~~~~~t~hL~~~~~a~~tFk~Gt~~g~p~pp~f 142 (167)
T PF05752_consen 67 PALRYQSAVSAG--FDPVSARRLAGSGERVIYGGLDRPIMPQGTMPGIRSTNHLQSAQGALSTFKQGTPFGKPAPPGF 142 (167)
T ss_pred hHHHHHHHHHcC--CCHHHHHHHcCCCceEEecCcCCCCccccccccccCccHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 455555555433 344444 5567777655444322 234445555666666666664444555665
No 186
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.05 E-value=3.5e+02 Score=19.60 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=35.6
Q ss_pred cCceEEEeccccccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhh
Q 029701 77 PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI 131 (189)
Q Consensus 77 p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 131 (189)
.+..+-++.+ ...++....++++.-++.+-..+|++.|.|.+++....
T Consensus 24 ~dGyL~~v~~-------~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 24 NDGYLGVVTS-------ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CCceEEecCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555655442 23567777888888888888899999999999986654
Done!