Query 029701
Match_columns 189
No_of_seqs 109 out of 1055
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:16:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029701.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2323-2327//hhsearch_pdb/029701hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gm2_A ATP-dependent CLP prote 1.0 1 1 298.5 13.3 154 1-155 50-205 (205)
2 3p2l_A ATP-dependent CLP prote 1.0 1 1 259.3 12.8 148 2-159 53-200 (201)
3 3qwd_A ATP-dependent CLP prote 1.0 1 1 255.2 12.8 146 2-157 50-195 (203)
4 1tg6_A Putative ATP-dependent 1.0 1 1 253.5 14.7 149 2-160 105-253 (277)
5 2f6i_A ATP-dependent CLP prote 1.0 1 1 242.7 11.9 154 2-166 62-215 (215)
6 1yg6_A ATP-dependent CLP prote 1.0 1 1 232.9 13.7 144 2-155 49-192 (193)
7 2cby_A ATP-dependent CLP prote 1.0 1 1 230.6 12.9 150 2-161 50-199 (208)
8 1y7o_A ATP-dependent CLP prote 1.0 1 1 225.1 12.7 145 2-156 68-214 (218)
9 3viv_A 441AA long hypothetical 1.0 1 1 176.7 12.2 147 7-167 37-187 (230)
10 3bf0_A Protease 4; bacterial, 1.0 1 1 141.2 13.0 140 5-155 84-264 (593)
No 1
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=1.00 E-value=1 Score=298.55 Aligned_cols=154 Identities=35% Similarity=0.514 Sum_probs=147.5
Q ss_pred CCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCC
Q ss_conf 9767889999969998389988-876677763878999999986359985999824103188999850688721014675
Q 029701 1 MWLDFDNASKPIYLYINSSGTQ-NEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (189)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~-~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s 79 (189)
+||+.+++.++|+|||||||++ +.+++.+|+|++|++|||+|+++++||+|+|.|.|+|+|++|+++|++++|+++|||
T Consensus 50 l~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a 129 (205)
T 4gm2_A 50 LYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNS 129 (205)
T ss_dssp HHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTC
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHCCCCCCEEECCCC
T ss_conf 99874499998899996998777687788887779999999998549998999986521389999965887878953898
Q ss_pred EEEEECCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf 578754655456-6776799999999999999999999986099999999752699731499899838721870792
Q 029701 80 STKLYLPVVGRS-SGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 80 ~~miH~p~~~~~-~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~ 155 (189)
++|||||+ ++. .|++.|+.++++++.+.++.+.++|+++||++.+++.++|++++||+|+||++|||||+|++++
T Consensus 130 ~iMIHqP~-~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 130 SFCLNQSY-SIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp EEEECCCC-CCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred EEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
T ss_conf 79985673-25466689999999999999999999999987299999999985188033799999859961860379
No 2
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=259.30 Aligned_cols=148 Identities=36% Similarity=0.545 Sum_probs=141.6
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
||+.+++.++|+|+||||| |++.+|++||++|++++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus 53 ~l~~~~~~~~I~l~INSpG---------G~v~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~i 123 (201)
T 3p2l_A 53 FLESEDPDKDIYFYINSPG---------GMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQI 123 (201)
T ss_dssp HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHHCCCEEEEECCEEHHHHHHHHHCCCCCCEEECCCCEE
T ss_conf 9985599997799997998---------7789999999999971798499992773528999997386577797489769
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHH
Q ss_conf 875465545667767999999999999999999999860999999997526997314998998387218707924776
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~~~ 159 (189)
|+|+|+ +...|++.|+...++++.++++.+.++|+++||++.+++.++|++++||+|+||++|||||+|+++.++++
T Consensus 124 miH~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~~ll 200 (201)
T 3p2l_A 124 MIHQPL-GGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200 (201)
T ss_dssp EECCCE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSCC--
T ss_pred EEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECHHHHHHCCCCCEECCCHHHHH
T ss_conf 996464-24577889999999999999999999999983959999999850685613999998699558538887862
No 3
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=1.00 E-value=1 Score=255.23 Aligned_cols=146 Identities=35% Similarity=0.546 Sum_probs=139.1
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+|+.+++.++|.|+||||| |++.+|++||++|++++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus 50 ~l~~~~~~~~I~l~InSPG---------G~v~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~i 120 (203)
T 3qwd_A 50 FLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120 (203)
T ss_dssp HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHCCCCCEEEECCCCEE
T ss_conf 9985599998899995899---------8778999999999972699589991230418899997478680998699528
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHH
Q ss_conf 8754655456677679999999999999999999998609999999975269973149989983872187079247
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~ 157 (189)
|+|||+ +...|++.|+.+.++++.++++.+.++|+++||++.+++.++|++++||+|+||++|||||+|+++..+
T Consensus 121 miHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~~ 195 (203)
T 3qwd_A 121 MIHQPL-GGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 195 (203)
T ss_dssp ECCCCS-SSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC-
T ss_pred EEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCCCCC
T ss_conf 985352-013578789999999999999999999999939799999987405816259999986996785477654
No 4
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=253.52 Aligned_cols=149 Identities=31% Similarity=0.461 Sum_probs=141.1
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+|+.+++.++|.||||||| |++++|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||.+
T Consensus 105 ~l~~ed~~k~I~L~INSPG---------GsV~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~I 175 (277)
T 1tg6_A 105 FLQSESNKKPIHMYINSPG---------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175 (277)
T ss_dssp HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEECCEEHHHHHHHHHCCCCCCEEEECCCEE
T ss_conf 9985499997799997979---------8889999999999853999899986481888999997798587798549789
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 8754655456677679999999999999999999998609999999975269973149989983872187079247764
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~~~~ 160 (189)
|+|+|+ ++..|+..|+.+.++++.+.++.+.++|+++||++.+++++++++++||+++||++|||||+|++...++.+
T Consensus 176 mihqP~-~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~~~ 253 (277)
T 1tg6_A 176 MIHQPS-GGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGE 253 (277)
T ss_dssp EECCCC-CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC----
T ss_pred EEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCCHHHCC
T ss_conf 996463-156576888999999999999999999998719799999998746954479999977998786676365501
No 5
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=242.70 Aligned_cols=154 Identities=31% Similarity=0.424 Sum_probs=143.8
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+|+.+++ ++|.|+||||| |++.++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|.+
T Consensus 62 ~l~~~~~-k~I~l~INSPG---------Gsv~a~~~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i 131 (215)
T 2f6i_A 62 YLDNINH-NDIKIYINSPG---------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRI 131 (215)
T ss_dssp HHHHHCC-SCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEE
T ss_pred HHHHCCC-CCEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCEEECCCCEE
T ss_conf 9983799-83799997979---------8889999999999953999799991171868999997598266787689789
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf 87546554566776799999999999999999999986099999999752699731499899838721870792477642
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK 161 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~~~~~ 161 (189)
|+|+|+ +...|+..|+....+++.++++.+.+.|+++||++.+++.+++++++|||++||++|||||+|+++..++...
T Consensus 132 ~ih~p~-~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~~~~~~~ 210 (215)
T 2f6i_A 132 MIHQPL-GNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKLPHPYF 210 (215)
T ss_dssp ESSCTT-CSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCSSCCTTC
T ss_pred EEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCHHHHHHCCCCCEECCCCCCCHHH
T ss_conf 982430-1257766778999999999999999999998496999999987179351799999879987866886400454
Q ss_pred HCHHH
Q ss_conf 01589
Q 029701 162 RDYDM 166 (189)
Q Consensus 162 ~~~~~ 166 (189)
.+||+
T Consensus 211 ~~~~~ 215 (215)
T 2f6i_A 211 NKVEK 215 (215)
T ss_dssp C----
T ss_pred HHCCC
T ss_conf 42149
No 6
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=1.00 E-value=1 Score=232.86 Aligned_cols=144 Identities=38% Similarity=0.575 Sum_probs=135.7
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+|+.+++.++|.|+||||| |++.++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|.+
T Consensus 49 ~l~~~~~~~~I~l~InSPG---------G~v~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i 119 (193)
T 1yg6_A 49 FLEAENPEKDIYLYINSPG---------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 119 (193)
T ss_dssp HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCEEEECCCEE
T ss_conf 9983699998899998969---------8889999999999962999899991018879999997788476787059689
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf 87546554566776799999999999999999999986099999999752699731499899838721870792
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~ 155 (189)
|+|+|+ +...|+..|+....+++.+.++.+.+.|+++||++.+++.+++++++|||++||++|||||+|+++.
T Consensus 120 ~ih~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~ 192 (193)
T 1yg6_A 120 MIHQPL-GGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 192 (193)
T ss_dssp EECCCE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred EEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCEECCCC
T ss_conf 998164-2455788999999999999999999999987197999999986289587299999869977736778
No 7
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=1.00 E-value=1 Score=230.57 Aligned_cols=150 Identities=33% Similarity=0.479 Sum_probs=139.9
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+++.+++.++|.|+||||| |+++++++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|.+
T Consensus 50 ~~~~~~~~k~I~l~InSPG---------G~v~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~i 120 (208)
T 2cby_A 50 LLAAEDASKDISLYINSPG---------GSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARI 120 (208)
T ss_dssp HHHHHCSSSCEEEEEEECC---------BCHHHHHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEECCEEHHHHHHHHHCCCCCCEEECCCCEE
T ss_conf 9974799997799998979---------9889999999999953999899987486778999996799687898389289
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf 87546554566776799999999999999999999986099999999752699731499899838721870792477642
Q 029701 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK 161 (189)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~~~~~ 161 (189)
|+|+|+ ++..|+..|+....+++.+.++.+.+.|++++|++.+++.+++.+++|||++||+++||||+|++...+++..
T Consensus 121 gih~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~ 199 (208)
T 2cby_A 121 LMHQPL-GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEA 199 (208)
T ss_dssp ECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC------
T ss_pred EEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCCHHHHHHH
T ss_conf 985463-2456877789999999999999999999987496999999997689678299999869982866763899999
No 8
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=225.06 Aligned_cols=145 Identities=32% Similarity=0.556 Sum_probs=136.4
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 76788999996999838998887667776387899999998635998599982410318899985068872101467557
Q 029701 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
+|+.+++.++|.|+||||| |++.+|++||++|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|++
T Consensus 68 ~l~~~~~~k~I~l~InSPG---------G~v~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~i 138 (218)
T 1y7o_A 68 FLDAQDSTKDIYLYVNTPG---------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEY 138 (218)
T ss_dssp HHHHHCTTSCEEEEEEECC---------BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEE
T ss_pred HHHHCCCCCCEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEECCEEHHHHHHHHHCCCCCCEEECCCCEE
T ss_conf 9984699987899998959---------7879999999999963999899990573778999997598376788588089
Q ss_pred EEECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCH
Q ss_conf 8754655456--67767999999999999999999999860999999997526997314998998387218707924
Q 029701 82 KLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (189)
Q Consensus 82 miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~ 156 (189)
|+|+|+ +.. .|+..|+....+++.+.++++...|++++|++.+++.+++++++||+++||++|||||+|+++.+
T Consensus 139 gih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 139 MIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp ECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred EEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCCCC
T ss_conf 983352-1444767778899999999999999999999884979999999871797894999998799859767677
No 9
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=1.00 E-value=1 Score=176.74 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=124.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHHHHHCCCCCCEECCCCCEEEE
Q ss_conf 99999699983899888766777638789999999863599859998---241031889998506887210146755787
Q 029701 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVN---CGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (189)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~~~V~tv~---~G~aaS~a~~I~~ag~~~~R~a~p~s~~mi 83 (189)
++.+.|.|+||||| |++.++..||+.|+.+++||.++| .|.|+|+|++|+++|+ .|++.|+++|++
T Consensus 37 ~~~~~Ivl~inspG---------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d--~~~a~p~a~ig~ 105 (230)
T 3viv_A 37 DNAEAIIIELDTPG---------GRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGA 105 (230)
T ss_dssp TTCSEEEEEEEBSC---------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSS--EEEECTTCEEEC
T ss_pred CCCCEEEEEEECCC---------CCHHHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHCC--CEEECCCCEEEE
T ss_conf 99978999986998---------6889999999999968989999995699887689999998558--436989998985
Q ss_pred ECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 546554-5667767999999999999999999999860999999997526997314998998387218707924776420
Q 029701 84 YLPVVG-RSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKR 162 (189)
Q Consensus 84 H~p~~~-~~~G~~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~m~~~~~lsa~EA~~~GlID~I~~~~~~~~~~~ 162 (189)
|+|... +..|....+. .+.+..++ .+...|++++|++.+++++++.+++||+|+||++|||||+|.++..+++...
T Consensus 106 ~~p~~~~~~~G~~~~~~--~k~~~~~~-~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~ 182 (230)
T 3viv_A 106 CRPILGYSQNGSIIEAP--PAITNYFI-AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS 182 (230)
T ss_dssp CCEEEEECTTSCEEECC--HHHHHHHH-HHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred CCCEECCCCCCCCHHHH--HHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 55356379988732789--99999999-9999999996949999999996697336999997698427658999999985
Q ss_pred CHHHH
Q ss_conf 15899
Q 029701 163 DYDMM 167 (189)
Q Consensus 163 ~~~~~ 167 (189)
|++..
T Consensus 183 ~g~~v 187 (230)
T 3viv_A 183 NGMKT 187 (230)
T ss_dssp TTCBC
T ss_pred CCCEE
T ss_conf 29778
No 10
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=1.00 E-value=1 Score=141.18 Aligned_cols=140 Identities=18% Similarity=0.108 Sum_probs=112.7
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCHHHHHHHCCCCCCEECCCCCEE
Q ss_conf 889999969998389988876677763878999999986359---98599982410318899985068872101467557
Q 029701 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (189)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~~I~~~i~~~~---~~V~tv~~G~aaS~a~~I~~ag~~~~R~a~p~s~~ 81 (189)
.++..+.|.|+|||||+ |++.++.+||++|+..+ +||++++. .++|++++|++++ +++|+.|++.+
T Consensus 84 ~d~~ik~I~L~inspGg--------G~v~~~~~I~~~i~~~k~~gkpvva~~~-~aas~~y~lAsaa--d~i~~~P~~~v 152 (593)
T 3bf0_A 84 DDRNITGIVMDLKNFAG--------GDQPSMQYIGKALKEFRDSGKPVYAVGE-NYSQGQYYLASFA--NKIWLSPQGVV 152 (593)
T ss_dssp HCTTCCCEEEECTEEEE--------CCHHHHHHHHHHHHHHHHTTCCEEEEES-CEEHHHHHHHTTS--SEEEECTTCCE
T ss_pred HCCCCEEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHCCCEEEEEEC-CCHHHHHHHHHHC--CEEEECCCCEE
T ss_conf 48996399998279887--------7689999999999998834990999973-6414778999758--98998799569
Q ss_pred EEECCCCCC--C---------------CCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 875465545--6---------------677--------------679999999999999999999998609999999975
Q 029701 82 KLYLPVVGR--S---------------SGP--------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKD 130 (189)
Q Consensus 82 miH~p~~~~--~---------------~G~--------------~~dl~~~~~~l~~~~~~i~~~ya~~Tg~~~~~i~~~ 130 (189)
|+|.|.... + .|. ..+.....+.+....+.+.+.+++++|++.+++.++
T Consensus 153 g~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~ 232 (593)
T 3bf0_A 153 DLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPG 232 (593)
T ss_dssp ECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCH
T ss_pred EEECCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 88554234658899999759807999842566777865678899999999999999999999999998769999999999
Q ss_pred HCC-------CCCCCHHHHHHCCCCEEEECCC
Q ss_conf 269-------9731499899838721870792
Q 029701 131 IQR-------PKYMQAKEAIVYGLADKIIDSQ 155 (189)
Q Consensus 131 m~~-------~~~lsa~EA~~~GlID~I~~~~ 155 (189)
+++ ++||+++||+++||||+|....
T Consensus 233 ~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~ 264 (593)
T 3bf0_A 233 AQGLLEGLTKTGGDTAKYALENKLVDALASSA 264 (593)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHTTSSSEECCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHH
T ss_conf 74203334313784499999779988778799
Done!