Query 029702
Match_columns 189
No_of_seqs 122 out of 147
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 18:20:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029702.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2323-2327//hhsearch_pdb/029702hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o35_A Hypothetical protein DU 1.0 1 1 16.7 1.7 35 13-47 34-68 (105)
2 3fyb_A Protein of unknown func 1.0 1 1 16.4 1.5 35 13-47 33-67 (104)
3 2qv5_A AGR_C_5032P, uncharacte 1.0 1 1 12.8 2.4 51 84-143 181-231 (261)
4 2nly_A BH1492 protein, diverge 1.0 1 1 12.5 3.7 52 82-142 152-207 (245)
5 1abv_A Delta subunit of the F1 1.0 1 1 12.0 1.2 47 70-130 41-90 (134)
6 1yz7_A Probable translation in 1.0 1 1 11.5 1.6 23 23-45 12-34 (188)
7 3eab_G CHMP1B; spastin, MIT, E 1.0 1 1 11.0 1.4 21 28-48 3-23 (50)
8 4b4u_A Bifunctional protein fo 1.0 1 1 10.8 1.3 54 28-91 71-131 (303)
9 3c9i_A Tail needle protein GP2 1.0 1 1 10.4 0.5 15 76-93 160-174 (242)
10 3t46_A SCIN-D; secreted, virul 1.0 1 1 10.3 2.7 68 83-163 3-78 (91)
No 1
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=1.00 E-value=1 Score=16.67 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999788566555633999988752700147765
Q 029702 13 QIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDS 47 (189)
Q Consensus 13 qIdk~e~~~~k~k~e~sWlkkAAEeLdIdlDsDd~ 47 (189)
-||=..++..=-+-=..|+..||++.||+++.|+.
T Consensus 34 NIDLMnLAGFCRNCLskWy~~aA~e~G~~~~~d~A 68 (105)
T 2o35_A 34 NIDLMNLAGFCRNCLSNWYREAAEASGVPMSKEES 68 (105)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 89999998888988999999999974886888999
No 2
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=1.00 E-value=1 Score=16.43 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999788566555633999988752700147765
Q 029702 13 QIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDS 47 (189)
Q Consensus 13 qIdk~e~~~~k~k~e~sWlkkAAEeLdIdlDsDd~ 47 (189)
-||=..++..=-+-=..|+..||++.|++++.|+.
T Consensus 33 NIDLMnLAGFCRNCLskWy~~aA~~~G~~~~~d~A 67 (104)
T 3fyb_A 33 NIDLMIQADFCRNCLAKWLMEAATEQGVELDYDGA 67 (104)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 79999998888988999999999975886888999
No 3
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=1.00 E-value=1 Score=12.80 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCHHHHHHHCC
Q ss_conf 876211368997533587699999721688502221024571220355462538988339
Q 029702 84 TFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNAG 143 (189)
Q Consensus 84 g~S~kYlT~ggv~~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq~~Ve~L~~Lk~~~ 143 (189)
..+..||...-....+.+||+.++. -+.+.|.-..|||-.-+-+++|+.-.
T Consensus 181 ~~rdvFLD~~~~~~~I~~qL~~a~~---------~Ar~~G~AIaIGhp~p~Ti~aL~~~~ 231 (261)
T 2qv5_A 181 GFADVLLDGEVTEASILRKLDDLER---------IARRNGQAIGVASAFDESIAAISKWS 231 (261)
T ss_dssp EECSEETTSSCSHHHHHHHHHHHHH---------HHHHHSEEEEEEECCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---------HHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf 8751644898999999999999999---------98761918999689989999999986
No 4
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=1.00 E-value=1 Score=12.46 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCC---HHHHHHHC
Q ss_conf 99876211368-997533587699999721688502221024571220355462---53898833
Q 029702 82 PKTFSRHYLAG-AGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVE---PLQALRNA 142 (189)
Q Consensus 82 ~kg~S~kYlT~-ggv~~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq~~Ve---~L~~Lk~~ 142 (189)
|...+..||.. .--...+.+||+.++. -+.+.|.-..|||-..+ -+.+|+.-
T Consensus 152 p~~~rdvFLD~~~~~~~~I~~ql~~a~~---------~A~~~G~aIaIGhp~p~~~~Ti~aL~~~ 207 (245)
T 2nly_A 152 PYATRSIFLDNTHSSRKEVIKNMRKLAK---------KAKQGSEPIGIGHVGVRGDETYAGIRSM 207 (245)
T ss_dssp CEEECCEESCCTTCCHHHHHHHHHHHHH---------HHHTTSCCEEEEECSTTHHHHHHHHGGG
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHH---------HHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8477527777999999999999999999---------9866292799977888734579999998
No 5
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=1.00 E-value=1 Score=11.95 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=31.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECC
Q ss_conf 9999974799999987621136---899753358769999972168850222102457122035
Q 029702 70 QELNAMLSRPLQPKTFSRHYLA---GAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQ 130 (189)
Q Consensus 70 aeLk~LLsqPL~~kg~S~kYlT---~ggv~~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq 130 (189)
.+|..+|+ |.++..-....+. ++.+++...+-+.-|+. .++..+|..
T Consensus 41 ~~l~~~l~-P~i~~~~K~~~l~~~~~~~~~~~~~nfl~ll~~-------------~~Rl~~l~~ 90 (134)
T 1abv_A 41 EQMAELLS-GALAPETLAESFIAVCGEQLDENGQNLIRVMAE-------------NGRLNALPD 90 (134)
T ss_dssp HHHHHHHT-CSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHH-------------TTCGGGHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------------CCCHHHHHH
T ss_conf 78999878-669999999999999833689999999999998-------------774888999
No 6
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=1.00 E-value=1 Score=11.46 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 65556339999887527001477
Q 029702 23 QEKAKKTWFERNAEAVELVVDNY 45 (189)
Q Consensus 23 k~k~e~sWlkkAAEeLdIdlDsD 45 (189)
+...=.+||+-+|+.+++++++.
T Consensus 12 ~~qkv~sil~~vAek~~~~~Eel 34 (188)
T 1yz7_A 12 RAQKAENLLKLAAEKLGKDFETA 34 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99899999999998839998999
No 7
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=11.00 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCH
Q ss_conf 339999887527001477654
Q 029702 28 KTWFERNAEAVELVVDNYDSE 48 (189)
Q Consensus 28 ~sWlkkAAEeLdIdlDsDd~e 48 (189)
++-+.|.|+|.||++......
T Consensus 3 d~Lm~qVaDE~Glel~~~L~~ 23 (50)
T 3eab_G 3 DMLLQEMADEAGLDLNMELPQ 23 (50)
T ss_dssp CHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHCCHHHHHCCC
T ss_conf 899999999949467764041
No 8
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=1.00 E-value=1 Score=10.76 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCCCCCCCCCCC
Q ss_conf 33999988752700147765489887898767849999999999999-------74799999987621136
Q 029702 28 KTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNA-------MLSRPLQPKTFSRHYLA 91 (189)
Q Consensus 28 ~sWlkkAAEeLdIdlDsDd~e~e~~~~~Kq~k~~k~~lk~LkaeLk~-------LLsqPL~~kg~S~kYlT 91 (189)
-.|-.++|+++||....-.+.++ .+..++-..=.+|+. |+.-|| |..+...++.
T Consensus 71 v~~K~k~c~~vGi~s~~~~lp~~---------~se~ell~~I~~LN~D~~V~GIlVQlPL-P~hid~~~i~ 131 (303)
T 4b4u_A 71 VRMKGNACRRVGMDSLKIELPQE---------TTTEQLLAEIEKLNANPDVHGILLQHPV-PAQIDERACF 131 (303)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTT---------CCHHHHHHHHHHHHTCTTCCEEEECSSC-CTTSCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCC---------CCHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCCHHHHH
T ss_conf 99999999984996898734765---------7999999999986189976679984789-5223738787
No 9
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=1.00 E-value=1 Score=10.36 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=8.2
Q ss_pred HCCCCCCCCCCCCCCCCC
Q ss_conf 479999998762113689
Q 029702 76 LSRPLQPKTFSRHYLAGA 93 (189)
Q Consensus 76 LsqPL~~kg~S~kYlT~g 93 (189)
|+.|| +++.+|.-+|
T Consensus 160 LaSpl---~V~~SYsV~G 174 (242)
T 3c9i_A 160 LASPL---NVTTSYSVGG 174 (242)
T ss_dssp CSSCE---EESSCEEETT
T ss_pred CCCCC---CCCEEEEECC
T ss_conf 26764---4301355278
No 10
>3t46_A SCIN-D; secreted, virulence, immune system; 1.50A {Staphylococcus aureus subsp}
Probab=1.00 E-value=1 Score=10.26 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCHHHH-------HHHCCCCCCCCHHHHH
Q ss_conf 987621136899-75335876999997216885022210245712203554625389-------8833945435605779
Q 029702 83 KTFSRHYLAGAG-VSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQA-------LRNAGHEVHMDGKEMA 154 (189)
Q Consensus 83 kg~S~kYlT~gg-v~~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq~~Ve~L~~-------Lk~~~~~~~~~~~~~~ 154 (189)
.|.|.+|+|+.- .+-.+..+|..|+. ......+.....+|..- .+.+---+..+.++|+
T Consensus 3 ~~~~~s~~T~~~y~dq~la~eL~~Ll~-------------~~nvn~LA~~sLn~YyKR~Imm~~y~AK~Alksknf~kM~ 69 (91)
T 3t46_A 3 TGSSKSETTSHTYQHQALVDQLHELIA-------------NTDLNKLSYLNLDAFQKRDILAAHYIAKSAIRTKNLDQMT 69 (91)
T ss_dssp --------------CHHHHHHHHHHHH-------------TTCGGGCGGGCCCHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-------------HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 886642102578888999999999997-------------5128898851544999999999999999999853599999
Q ss_pred HHHHHHHHH
Q ss_conf 976523898
Q 029702 155 EKRRNLDSL 163 (189)
Q Consensus 155 ~~~~~~~~~ 163 (189)
+-.--+||.
T Consensus 70 ~AK~~LE~I 78 (91)
T 3t46_A 70 KAKQRLESI 78 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
Done!