Query 029702
Match_columns 189
No_of_seqs 122 out of 147
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 18:21:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029702.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2323-2327//hhsearch_scop/029702hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o35a1 a.293.1.1 (A:2-80) Hyp 22.2 19 0.0014 14.5 1.7 34 14-47 32-65 (79)
2 d1b0aa2 c.58.1.2 (A:2-122) Tet 14.6 33 0.0024 13.2 1.5 56 27-92 49-111 (121)
3 d2ahob1 a.60.14.1 (B:85-175) E 14.0 35 0.0026 13.0 1.6 24 21-44 13-36 (91)
4 d1nrja_ d.110.4.4 (A:) Srx dom 7.2 63 0.0046 11.6 0.9 30 68-97 30-59 (155)
5 d1kn0a_ d.50.1.3 (A:) The homo 6.3 71 0.0052 11.3 2.7 44 69-112 12-56 (184)
6 d2nlya1 c.6.2.7 (A:31-254) Hyp 5.9 74 0.0054 11.2 3.2 49 84-141 152-204 (224)
7 d1g2ha_ a.4.1.12 (A:) Transcri 4.8 89 0.0065 10.8 0.6 13 29-41 34-46 (61)
8 d1y74b1 a.194.1.1 (B:83-132) P 3.7 1.1E+02 0.0079 10.3 0.3 12 70-81 22-33 (50)
9 d1w85i_ a.9.1.1 (I:) E3/E1 bin 3.3 1.2E+02 0.0086 10.1 1.5 14 31-44 8-21 (42)
10 d1v4aa1 a.24.16.4 (A:287-437) 2.8 1.4E+02 0.01 9.6 4.7 80 63-156 8-87 (151)
No 1
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=22.17 E-value=19 Score=14.50 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999788566555633999988752700147765
Q 029702 14 IDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDS 47 (189)
Q Consensus 14 Idk~e~~~~k~k~e~sWlkkAAEeLdIdlDsDd~ 47 (189)
||=..++..=-+-=..|+..+|++.|+++|-|+.
T Consensus 32 IDLMnLaGFCRNCLskWy~~~a~~~g~~~~~d~A 65 (79)
T d2o35a1 32 IDLMNLAGFCRNCLSNWYREAAEASGVPMSKEES 65 (79)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 6999999999999999999999986998999999
No 2
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=33 Score=13.19 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCCCCCCCCCCCC
Q ss_conf 633999988752700147765489887898767849999999999999-------747999999876211368
Q 029702 27 KKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNA-------MLSRPLQPKTFSRHYLAG 92 (189)
Q Consensus 27 e~sWlkkAAEeLdIdlDsDd~e~e~~~~~Kq~k~~k~~lk~LkaeLk~-------LLsqPL~~kg~S~kYlT~ 92 (189)
=-+|-.++|+++||.+..-.+.+. .+..++-..=.+|+. |+..|| |.+++..++..
T Consensus 49 Yv~~k~k~a~~lGi~~~~~~l~~~---------~t~~~l~~~I~~lN~d~~v~GIlvqlPL-P~~i~~~~i~~ 111 (121)
T d1b0aa2 49 YVASKRKACEEVGFVSRSYDLPET---------TSEAELLELIDTLNADNTIDGILVQLPL-PAGIDNVKVLE 111 (121)
T ss_dssp HHHHHHHHHHHHTCEECCEEECTT---------CCHHHHHHHHHHHHTCTTCCEEEECSSC-CTTSCHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHHHHHHHHCCCCHHHHHHCCCC-CCCCCHHHHHH
T ss_conf 999999999852110255300122---------4499999999998478740245625899-87769999986
No 3
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=14.04 E-value=35 Score=13.03 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 566555633999988752700147
Q 029702 21 DSQEKAKKTWFERNAEAVELVVDN 44 (189)
Q Consensus 21 ~~k~k~e~sWlkkAAEeLdIdlDs 44 (189)
-.+...-.+||+-+|+.+|+++++
T Consensus 13 ~k~~qka~~il~~vAek~g~~~ee 36 (91)
T d2ahob1 13 WKKIQRLDKILELVSQKLKLSEKD 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999999999983979999
No 4
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.22 E-value=63 Score=11.59 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999974799999987621136899753
Q 029702 68 LQQELNAMLSRPLQPKTFSRHYLAGAGVSP 97 (189)
Q Consensus 68 LkaeLk~LLsqPL~~kg~S~kYlT~ggv~~ 97 (189)
.-+=..+|++.|+..+-.|++|-|.++...
T Consensus 30 iN~fIShLissP~~~~es~~~~~~~~~~~~ 59 (155)
T d1nrja_ 30 INSFISQLITSPVTRKESVANANTDGFDFN 59 (155)
T ss_dssp HHHHHHHHHHSCCCGGGEECSGGGTTCCEE
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
T ss_conf 999999985388632233221334444420
No 5
>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.28 E-value=71 Score=11.31 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCC
Q ss_conf 99999974799999987621136899-753358769999972168
Q 029702 69 QQELNAMLSRPLQPKTFSRHYLAGAG-VSPLLQRQLEEIAKEKLP 112 (189)
Q Consensus 69 kaeLk~LLsqPL~~kg~S~kYlT~gg-v~~l~~~q~~~L~~~~v~ 112 (189)
..+|...|++|+.|.-+|.|+-.+|. +.-++....-+++.....
T Consensus 12 ~~~lq~~L~k~~~~e~Is~R~g~gg~~~~YI~~~~vi~~aNeVFG 56 (184)
T d1kn0a_ 12 YQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFG 56 (184)
T ss_dssp HHHHHHHTTCCBCTTTEEEEECSSSCEEEEECHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHEEEECCCCCCEEECCHHHHHHHHHHHHC
T ss_conf 999999984514888946323799851130428999999999859
No 6
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}
Probab=5.92 E-value=74 Score=11.19 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCC---CCHHHHHHH
Q ss_conf 8762113689975-335876999997216885022210245712203554---625389883
Q 029702 84 TFSRHYLAGAGVS-PLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDC---VEPLQALRN 141 (189)
Q Consensus 84 g~S~kYlT~ggv~-~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq~~---Ve~L~~Lk~ 141 (189)
..+..||.....+ ..+.+||+.++. -+.+.|.-.+|||-- -+-|++|+.
T Consensus 152 ~~rdvfLD~~~~~~~~I~~~l~~~~~---------~A~~~G~AI~IGH~~~p~p~Tl~~L~~ 204 (224)
T d2nlya1 152 ATRSIFLDNTHSSRKEVIKNMRKLAK---------KAKQGSEPIGIGHVGVRGDETYAGIRS 204 (224)
T ss_dssp EECCEESCCTTCCHHHHHHHHHHHHH---------HHHTTSCCEEEEECSTTHHHHHHHHGG
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHH---------HHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 88878657999719999999999999---------987369679998379997689999999
No 7
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=4.75 E-value=89 Score=10.75 Aligned_cols=13 Identities=8% Similarity=0.002 Sum_probs=9.9
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 3999988752700
Q 029702 29 TWFERNAEAVELV 41 (189)
Q Consensus 29 sWlkkAAEeLdId 41 (189)
.|..+||+.|||.
T Consensus 34 gn~~~aA~~Lgis 46 (61)
T d1g2ha_ 34 PSTRKLAQRLGVS 46 (61)
T ss_dssp CSHHHHHHHTTSC
T ss_pred CCHHHHHHHHCCC
T ss_conf 8999999997988
No 8
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=1.1e+02 Score=10.26 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=8.0
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999997479999
Q 029702 70 QELNAMLSRPLQ 81 (189)
Q Consensus 70 aeLk~LLsqPL~ 81 (189)
.||..||++|=|
T Consensus 22 ~EL~~lL~~PH~ 33 (50)
T d1y74b1 22 KELKRILTQPHF 33 (50)
T ss_dssp HHHHHHHHSHHH
T ss_pred HHHHHHHHCHHH
T ss_conf 999999868789
No 9
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.32 E-value=1.2e+02 Score=10.06 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=10.3
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99988752700147
Q 029702 31 FERNAEAVELVVDN 44 (189)
Q Consensus 31 lkkAAEeLdIdlDs 44 (189)
.++.|++.+||++.
T Consensus 8 arkla~e~gidl~~ 21 (42)
T d1w85i_ 8 VRKYAREKGVDIRL 21 (42)
T ss_dssp HHHHHHHTTCCTTT
T ss_pred HHHHHHHCCCCHHH
T ss_conf 99999994998988
No 10
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=1.4e+02 Score=9.61 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCHHHHHHHC
Q ss_conf 99999999999974799999987621136899753358769999972168850222102457122035546253898833
Q 029702 63 MQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNA 142 (189)
Q Consensus 63 ~~lk~LkaeLk~LLsqPL~~kg~S~kYlT~ggv~~l~~~q~~~L~~~~v~~~~~~~~~k~~~~~viGq~~Ve~L~~Lk~~ 142 (189)
..+..||+.+..-.... - ...--|.--||.+++-.--|+-.|.+ | ..+..+.+.+.+++|..|...
T Consensus 8 ~~v~~MR~ri~~~~~~~-~-~~~dlK~~~GGL~DIEfi~Q~lqL~~---------~---~~~p~~~~~~~~~~l~~l~~~ 73 (151)
T d1v4aa1 8 QSLRNMKGMIAREVRRR-G-LTDNIKLGAGGIREIEFIVQVFQLIR---------G---GREPSLQSRSLLPTLSAIAEL 73 (151)
T ss_dssp HHHHHHHHHHHHHHHHH-C-SCCBTTTSTTSHHHHHHHHHHHHHHH---------T---TTCGGGCCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCC-C-CCCCCCCCCCCEEHHHHHHHHHHHHH---------C---CCCCCCCCCCHHHHHHHHHHC
T ss_conf 99999999999765466-8-88775779985102999999999970---------3---478101476689999999985
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 94543560577997
Q 029702 143 GHEVHMDGKEMAEK 156 (189)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (189)
|---.-+....++-
T Consensus 74 g~l~~~~~~~L~~a 87 (151)
T d1v4aa1 74 HLLSENDAEQLRVA 87 (151)
T ss_dssp TSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99978999999999
Done!