Query 029703
Match_columns 189
No_of_seqs 200 out of 1983
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 17:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.9E-27 4.1E-32 167.7 11.6 105 77-189 44-148 (150)
2 PHA02278 thioredoxin-like prot 99.9 1.6E-24 3.6E-29 147.0 13.1 96 81-184 2-100 (103)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 7.6E-25 1.6E-29 150.0 9.5 89 83-174 2-90 (114)
4 PF00085 Thioredoxin: Thioredo 99.9 2E-23 4.4E-28 141.2 13.6 100 81-188 4-103 (103)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.6E-24 1.6E-28 146.0 11.1 96 83-184 16-112 (113)
6 KOG0907 Thioredoxin [Posttrans 99.9 1.5E-23 3.2E-28 142.5 11.9 99 83-188 7-105 (106)
7 COG3118 Thioredoxin domain-con 99.9 6.8E-24 1.5E-28 164.5 11.3 106 77-189 25-130 (304)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-23 2.8E-28 142.4 11.3 97 78-184 4-100 (101)
9 cd02985 TRX_CDSP32 TRX family, 99.9 4.4E-23 9.4E-28 140.4 13.8 98 82-187 2-101 (103)
10 cd02948 TRX_NDPK TRX domain, T 99.9 4.6E-23 9.9E-28 140.1 13.7 98 79-187 3-101 (102)
11 cd03065 PDI_b_Calsequestrin_N 99.9 2.2E-23 4.7E-28 144.7 12.2 99 82-189 15-119 (120)
12 cd02956 ybbN ybbN protein fami 99.9 5.8E-23 1.3E-27 137.8 12.3 95 85-186 2-96 (96)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.2E-23 9.1E-28 140.5 11.1 96 82-185 7-104 (104)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 8E-23 1.7E-27 140.9 11.9 101 82-188 10-111 (111)
15 PLN00410 U5 snRNP protein, DIM 99.9 1.3E-22 2.9E-27 144.0 12.7 91 77-170 5-97 (142)
16 PRK10996 thioredoxin 2; Provis 99.9 4.5E-22 9.7E-27 142.4 13.9 99 82-189 41-139 (139)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.3E-22 1.2E-26 137.2 13.7 104 76-185 5-112 (113)
18 cd02999 PDI_a_ERp44_like PDIa 99.9 2.3E-22 5E-27 136.1 10.8 92 85-185 8-100 (100)
19 PRK09381 trxA thioredoxin; Pro 99.9 1E-21 2.3E-26 134.8 13.9 104 77-189 5-108 (109)
20 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.4E-22 9.6E-27 136.5 11.6 99 77-185 3-108 (108)
21 cd02965 HyaE HyaE family; HyaE 99.9 1.5E-21 3.2E-26 132.9 11.7 88 82-174 16-105 (111)
22 cd02994 PDI_a_TMX PDIa family, 99.9 2.5E-21 5.3E-26 131.1 12.6 98 77-187 3-101 (101)
23 cd03005 PDI_a_ERp46 PDIa famil 99.9 2.2E-21 4.8E-26 131.3 11.7 94 82-185 6-102 (102)
24 cd02957 Phd_like Phosducin (Ph 99.9 1.6E-21 3.5E-26 134.8 9.8 104 77-185 6-112 (113)
25 TIGR01068 thioredoxin thioredo 99.9 1.1E-20 2.4E-25 127.2 13.4 99 83-189 3-101 (101)
26 cd02984 TRX_PICOT TRX domain, 99.9 7.6E-21 1.6E-25 127.6 12.2 96 82-185 1-96 (97)
27 cd03002 PDI_a_MPD1_like PDI fa 99.9 4.9E-21 1.1E-25 131.2 11.2 96 82-185 6-108 (109)
28 cd02950 TxlA TRX-like protein 99.9 8.2E-21 1.8E-25 136.3 12.4 98 83-188 10-109 (142)
29 PTZ00051 thioredoxin; Provisio 99.9 1.3E-20 2.7E-25 126.8 12.2 91 77-173 2-92 (98)
30 KOG0908 Thioredoxin-like prote 99.9 3.1E-21 6.7E-26 145.6 10.1 104 76-188 2-105 (288)
31 TIGR01126 pdi_dom protein disu 99.9 1.1E-20 2.4E-25 127.6 12.0 99 82-189 2-102 (102)
32 cd02987 Phd_like_Phd Phosducin 99.9 1.7E-20 3.7E-25 139.0 13.8 112 73-188 60-174 (175)
33 PTZ00443 Thioredoxin domain-co 99.9 1E-20 2.2E-25 144.7 12.4 106 77-188 32-138 (224)
34 cd02997 PDI_a_PDIR PDIa family 99.9 1.5E-20 3.2E-25 127.6 11.8 94 83-185 7-104 (104)
35 cd02962 TMX2 TMX2 family; comp 99.8 2.8E-20 6E-25 134.4 13.1 92 76-171 29-127 (152)
36 cd02986 DLP Dim1 family, Dim1- 99.8 2.1E-20 4.5E-25 127.3 11.7 85 83-170 2-86 (114)
37 cd03001 PDI_a_P5 PDIa family, 99.8 3.1E-20 6.6E-25 125.9 11.9 96 82-185 6-102 (103)
38 cd02949 TRX_NTR TRX domain, no 99.8 4.3E-20 9.3E-25 124.2 12.5 93 86-186 5-97 (97)
39 cd02953 DsbDgamma DsbD gamma f 99.8 1.7E-20 3.8E-25 127.6 9.2 95 84-186 2-104 (104)
40 cd03000 PDI_a_TMX3 PDIa family 99.8 7.7E-20 1.7E-24 124.5 11.4 95 83-188 6-103 (104)
41 cd02993 PDI_a_APS_reductase PD 99.8 9.1E-20 2E-24 125.2 11.4 99 82-185 7-109 (109)
42 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.3E-19 4.9E-24 121.6 10.3 94 83-185 7-104 (104)
43 cd02998 PDI_a_ERp38 PDIa famil 99.8 3E-19 6.5E-24 121.2 10.0 95 83-185 7-105 (105)
44 cd02975 PfPDO_like_N Pyrococcu 99.8 4.9E-19 1.1E-23 122.3 11.1 88 95-188 20-109 (113)
45 cd02961 PDI_a_family Protein D 99.8 4E-19 8.7E-24 119.1 10.3 95 82-185 4-101 (101)
46 TIGR01295 PedC_BrcD bacterioci 99.8 1.7E-18 3.7E-23 121.1 12.7 95 82-186 12-121 (122)
47 cd02951 SoxW SoxW family; SoxW 99.8 1.4E-18 3.1E-23 122.0 11.7 96 84-187 4-117 (125)
48 KOG0190 Protein disulfide isom 99.8 3.2E-19 6.9E-24 148.3 9.6 103 76-188 26-131 (493)
49 PTZ00102 disulphide isomerase; 99.8 4.8E-19 1E-23 150.1 10.6 156 24-188 294-464 (477)
50 cd02947 TRX_family TRX family; 99.8 5.1E-18 1.1E-22 111.7 11.9 91 85-185 2-92 (93)
51 cd02988 Phd_like_VIAF Phosduci 99.8 3.2E-18 7E-23 128.4 12.0 108 73-187 80-190 (192)
52 TIGR02187 GlrX_arch Glutaredox 99.8 2.6E-18 5.7E-23 131.5 10.8 145 22-187 67-214 (215)
53 KOG0191 Thioredoxin/protein di 99.8 9.4E-19 2E-23 144.7 8.7 160 19-188 88-251 (383)
54 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.3E-18 4.9E-23 118.4 8.8 96 81-188 6-115 (116)
55 TIGR01130 ER_PDI_fam protein d 99.8 1.4E-17 3E-22 140.3 12.9 98 82-188 7-108 (462)
56 TIGR00424 APS_reduc 5'-adenyly 99.7 1.3E-17 2.9E-22 139.1 11.9 106 77-188 353-462 (463)
57 cd02959 ERp19 Endoplasmic reti 99.7 4.8E-18 1E-22 118.0 7.7 102 85-186 7-114 (117)
58 PTZ00102 disulphide isomerase; 99.7 1.8E-17 3.9E-22 140.5 12.7 98 81-188 37-137 (477)
59 cd02952 TRP14_like Human TRX-r 99.7 2.3E-17 4.9E-22 114.3 10.8 84 79-164 5-102 (119)
60 PTZ00062 glutaredoxin; Provisi 99.7 2.2E-17 4.8E-22 124.5 11.6 89 81-187 4-92 (204)
61 cd02992 PDI_a_QSOX PDIa family 99.7 2.9E-17 6.3E-22 113.6 10.6 79 82-163 7-89 (114)
62 PLN02309 5'-adenylylsulfate re 99.7 5.1E-17 1.1E-21 135.6 12.4 102 81-188 350-456 (457)
63 TIGR00411 redox_disulf_1 small 99.7 2E-16 4.4E-21 102.7 10.9 81 100-189 2-82 (82)
64 cd02982 PDI_b'_family Protein 99.7 9.6E-17 2.1E-21 108.7 9.7 89 96-189 11-103 (103)
65 TIGR01130 ER_PDI_fam protein d 99.7 8.2E-17 1.8E-21 135.6 9.2 97 82-188 352-453 (462)
66 KOG4277 Uncharacterized conser 99.7 7.2E-17 1.6E-21 125.4 7.8 97 84-187 31-130 (468)
67 PRK00293 dipZ thiol:disulfide 99.7 3.8E-16 8.2E-21 134.8 13.0 108 76-188 453-569 (571)
68 KOG0912 Thiol-disulfide isomer 99.7 8.3E-17 1.8E-21 124.9 7.9 98 83-189 3-106 (375)
69 KOG0190 Protein disulfide isom 99.7 1.1E-16 2.3E-21 133.4 8.1 96 83-188 373-472 (493)
70 PF13098 Thioredoxin_2: Thiore 99.7 2.7E-16 5.7E-21 108.2 7.3 88 94-185 2-112 (112)
71 TIGR02187 GlrX_arch Glutaredox 99.6 3.1E-15 6.6E-20 114.6 11.2 87 96-188 18-110 (215)
72 cd02955 SSP411 TRX domain, SSP 99.6 1.2E-14 2.6E-19 101.6 11.0 83 84-171 6-100 (124)
73 TIGR02738 TrbB type-F conjugat 99.6 1.7E-14 3.7E-19 104.5 12.0 88 96-189 49-153 (153)
74 PHA02125 thioredoxin-like prot 99.6 1.7E-14 3.6E-19 92.4 9.4 62 101-172 2-63 (75)
75 TIGR00412 redox_disulf_2 small 99.6 1.5E-14 3.2E-19 92.9 9.1 73 101-185 2-75 (76)
76 cd03008 TryX_like_RdCVF Trypar 99.6 1.7E-14 3.8E-19 103.4 9.9 73 95-167 23-128 (146)
77 PRK15412 thiol:disulfide inter 99.6 3.2E-14 6.8E-19 106.6 11.8 90 95-187 66-178 (185)
78 PRK14018 trifunctional thiored 99.6 2.3E-14 5E-19 121.3 12.1 87 95-186 54-170 (521)
79 cd02958 UAS UAS family; UAS is 99.6 6.2E-14 1.3E-18 96.9 11.9 104 84-187 4-113 (114)
80 KOG0191 Thioredoxin/protein di 99.6 1.8E-14 3.9E-19 119.2 9.8 88 95-187 45-132 (383)
81 TIGR00385 dsbE periplasmic pro 99.5 7.6E-14 1.6E-18 103.4 11.2 87 95-188 61-170 (173)
82 PF13905 Thioredoxin_8: Thiore 99.5 7.6E-14 1.6E-18 93.1 9.8 68 97-164 1-95 (95)
83 PRK11509 hydrogenase-1 operon 99.5 3.4E-13 7.3E-18 94.6 12.2 97 83-188 24-123 (132)
84 cd03010 TlpA_like_DsbE TlpA-li 99.5 2E-13 4.4E-18 95.9 10.4 77 95-174 23-123 (127)
85 TIGR02740 TraF-like TraF-like 99.5 3.8E-13 8.3E-18 106.2 12.9 85 95-181 164-260 (271)
86 cd02964 TryX_like_family Trypa 99.5 1.3E-13 2.8E-18 97.7 9.2 73 95-167 15-115 (132)
87 cd03009 TryX_like_TryX_NRX Try 99.5 1.8E-13 3.8E-18 96.7 9.1 72 96-167 17-115 (131)
88 PRK03147 thiol-disulfide oxido 99.5 4.4E-13 9.5E-18 98.9 11.6 88 96-187 60-170 (173)
89 cd02973 TRX_GRX_like Thioredox 99.5 4.6E-13 9.9E-18 83.7 8.4 62 100-165 2-63 (67)
90 PLN02919 haloacid dehalogenase 99.5 4.7E-13 1E-17 122.6 11.3 89 96-188 419-535 (1057)
91 cd02960 AGR Anterior Gradient 99.4 5.7E-13 1.2E-17 93.3 8.2 88 84-173 10-101 (130)
92 smart00594 UAS UAS domain. 99.4 3.1E-12 6.7E-17 89.5 11.3 99 83-185 13-121 (122)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.2E-12 4.8E-17 89.9 10.3 77 95-174 18-115 (123)
94 PRK13728 conjugal transfer pro 99.4 2.7E-12 5.9E-17 94.8 10.7 83 101-185 73-171 (181)
95 cd02966 TlpA_like_family TlpA- 99.4 2.4E-12 5.3E-17 87.6 9.8 74 96-170 18-116 (116)
96 cd02967 mauD Methylamine utili 99.4 2.1E-12 4.6E-17 88.8 9.3 70 96-166 20-110 (114)
97 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 3.3E-12 7.1E-17 84.4 9.5 73 96-174 11-83 (89)
98 cd03012 TlpA_like_DipZ_like Tl 99.4 6.2E-12 1.3E-16 88.3 9.3 76 96-171 22-125 (126)
99 PF13899 Thioredoxin_7: Thiore 99.4 2.1E-12 4.6E-17 84.0 6.2 75 84-160 4-81 (82)
100 PF08534 Redoxin: Redoxin; In 99.4 1.6E-11 3.5E-16 88.2 11.4 78 96-173 27-136 (146)
101 TIGR01626 ytfJ_HI0045 conserve 99.3 1.6E-11 3.4E-16 91.3 10.7 90 95-188 57-182 (184)
102 COG4232 Thiol:disulfide interc 99.3 8.3E-12 1.8E-16 105.4 9.5 103 78-187 457-566 (569)
103 KOG1731 FAD-dependent sulfhydr 99.3 1.4E-12 3E-17 109.2 4.7 103 80-185 43-153 (606)
104 PLN02399 phospholipid hydroper 99.3 5.2E-11 1.1E-15 92.0 10.4 89 96-188 98-233 (236)
105 KOG2501 Thioredoxin, nucleored 99.3 1.8E-11 3.8E-16 87.6 7.2 71 96-166 32-130 (157)
106 TIGR02661 MauD methylamine deh 99.2 7.2E-11 1.6E-15 88.7 10.3 71 95-167 72-162 (189)
107 PF02114 Phosducin: Phosducin; 99.2 6.2E-11 1.3E-15 93.0 9.5 111 74-188 124-237 (265)
108 PLN02412 probable glutathione 99.2 1.2E-10 2.5E-15 85.9 9.0 91 96-186 28-165 (167)
109 PTZ00056 glutathione peroxidas 99.2 2.4E-10 5.2E-15 86.5 10.6 91 96-186 38-179 (199)
110 cd02991 UAS_ETEA UAS family, E 99.2 7.6E-10 1.6E-14 76.6 11.8 100 85-187 5-115 (116)
111 COG0526 TrxA Thiol-disulfide i 99.1 3.7E-10 8.1E-15 76.4 8.2 73 97-170 32-107 (127)
112 TIGR02540 gpx7 putative glutat 99.1 8.5E-10 1.8E-14 80.0 10.4 90 96-189 21-153 (153)
113 cd02969 PRX_like1 Peroxiredoxi 99.1 1.2E-09 2.5E-14 80.7 11.0 72 96-167 24-125 (171)
114 KOG0914 Thioredoxin-like prote 99.1 1.4E-10 3.1E-15 86.5 5.5 91 77-170 126-223 (265)
115 cd00340 GSH_Peroxidase Glutath 99.1 1.1E-09 2.3E-14 79.4 9.0 78 96-174 21-145 (152)
116 TIGR02196 GlrX_YruB Glutaredox 99.0 2.6E-09 5.6E-14 67.2 8.2 70 101-186 2-74 (74)
117 cd03017 PRX_BCP Peroxiredoxin 99.0 4.9E-09 1.1E-13 74.5 10.0 79 96-174 22-132 (140)
118 PF13848 Thioredoxin_6: Thiore 99.0 5E-09 1.1E-13 77.7 10.2 144 24-187 33-184 (184)
119 KOG1672 ATP binding protein [P 99.0 1.8E-09 3.9E-14 79.3 7.4 95 73-173 64-158 (211)
120 COG2143 Thioredoxin-related pr 99.0 7.5E-09 1.6E-13 73.6 10.3 80 95-174 40-138 (182)
121 PTZ00256 glutathione peroxidas 99.0 5.6E-09 1.2E-13 78.0 9.7 88 96-183 39-179 (183)
122 cd03015 PRX_Typ2cys Peroxiredo 98.9 2.1E-08 4.5E-13 74.2 11.0 92 96-187 28-155 (173)
123 PF03190 Thioredox_DsbH: Prote 98.9 4.7E-09 1E-13 76.2 7.2 80 88-168 28-119 (163)
124 cd01659 TRX_superfamily Thiore 98.9 1.1E-08 2.5E-13 61.5 7.4 61 101-162 1-63 (69)
125 KOG0913 Thiol-disulfide isomer 98.9 3.6E-10 7.9E-15 85.3 0.6 94 81-186 29-123 (248)
126 PF06110 DUF953: Eukaryotic pr 98.9 8.1E-09 1.8E-13 71.4 7.2 81 82-162 4-99 (119)
127 PF13192 Thioredoxin_3: Thiore 98.9 3.8E-08 8.3E-13 62.9 9.7 73 102-186 3-76 (76)
128 PF14595 Thioredoxin_9: Thiore 98.9 2.3E-08 5.1E-13 70.4 8.7 85 95-187 39-127 (129)
129 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 3.2E-08 6.9E-13 68.7 9.4 71 96-166 24-123 (124)
130 TIGR02200 GlrX_actino Glutared 98.8 1.5E-08 3.2E-13 64.5 6.9 57 101-165 2-63 (77)
131 TIGR03137 AhpC peroxiredoxin. 98.8 5.9E-08 1.3E-12 72.7 11.1 91 96-186 30-153 (187)
132 PRK00522 tpx lipid hydroperoxi 98.8 5.6E-08 1.2E-12 71.6 10.8 75 96-171 43-150 (167)
133 cd02970 PRX_like2 Peroxiredoxi 98.8 6.4E-08 1.4E-12 69.3 10.3 74 97-170 24-148 (149)
134 PF13728 TraF: F plasmid trans 98.8 1.3E-07 2.9E-12 72.3 12.2 78 95-174 118-207 (215)
135 cd03014 PRX_Atyp2cys Peroxired 98.8 6.4E-08 1.4E-12 69.1 9.5 76 96-172 25-130 (143)
136 PF11009 DUF2847: Protein of u 98.8 1.5E-07 3.3E-12 63.3 10.5 90 78-169 2-95 (105)
137 PRK09437 bcp thioredoxin-depen 98.8 1.2E-07 2.7E-12 68.6 10.8 90 96-186 29-153 (154)
138 cd03018 PRX_AhpE_like Peroxire 98.8 1.1E-07 2.4E-12 68.2 10.5 89 97-185 28-147 (149)
139 TIGR02180 GRX_euk Glutaredoxin 98.7 6.2E-08 1.4E-12 62.7 6.8 61 101-165 1-65 (84)
140 KOG3414 Component of the U4/U6 98.7 2.6E-07 5.7E-12 63.3 9.9 86 78-166 6-91 (142)
141 PF02966 DIM1: Mitosis protein 98.7 9.4E-07 2E-11 61.4 11.7 89 78-170 3-92 (133)
142 PRK11200 grxA glutaredoxin 1; 98.7 2E-07 4.4E-12 60.8 8.1 76 100-188 2-82 (85)
143 cd02971 PRX_family Peroxiredox 98.7 2.8E-07 6.2E-12 65.3 9.5 78 96-173 21-131 (140)
144 cd02968 SCO SCO (an acronym fo 98.7 8.2E-08 1.8E-12 68.3 6.6 44 96-139 21-69 (142)
145 PRK10382 alkyl hydroperoxide r 98.6 6.8E-07 1.5E-11 67.0 11.6 91 96-186 30-153 (187)
146 KOG3425 Uncharacterized conser 98.6 2.1E-07 4.6E-12 63.3 7.8 80 81-161 10-104 (128)
147 TIGR02739 TraF type-F conjugat 98.6 8.5E-07 1.8E-11 69.3 12.4 89 96-186 149-249 (256)
148 KOG0911 Glutaredoxin-related p 98.6 2.7E-08 5.9E-13 74.9 3.3 89 78-174 4-92 (227)
149 PRK15000 peroxidase; Provision 98.6 6.6E-07 1.4E-11 67.8 10.9 91 96-186 33-159 (200)
150 PRK10606 btuE putative glutath 98.6 7.5E-07 1.6E-11 66.5 9.7 42 96-138 24-66 (183)
151 KOG3171 Conserved phosducin-li 98.5 1.7E-07 3.8E-12 70.0 5.9 114 71-188 134-250 (273)
152 PRK13190 putative peroxiredoxi 98.5 1.1E-06 2.3E-11 66.8 10.4 88 96-187 26-152 (202)
153 TIGR03143 AhpF_homolog putativ 98.5 1.3E-06 2.9E-11 75.8 11.5 138 26-185 413-554 (555)
154 cd03016 PRX_1cys Peroxiredoxin 98.5 2.2E-06 4.8E-11 65.0 11.4 89 99-187 28-152 (203)
155 PRK13599 putative peroxiredoxi 98.5 2.4E-06 5.1E-11 65.4 11.3 92 96-187 27-154 (215)
156 PTZ00062 glutaredoxin; Provisi 98.5 6.5E-07 1.4E-11 67.8 7.7 116 26-165 56-179 (204)
157 cd03023 DsbA_Com1_like DsbA fa 98.5 1.7E-06 3.8E-11 62.0 9.6 41 95-136 3-43 (154)
158 PRK13703 conjugal pilus assemb 98.4 4.2E-06 9.1E-11 65.1 11.5 89 96-184 142-240 (248)
159 PRK13189 peroxiredoxin; Provis 98.4 4.3E-06 9.3E-11 64.4 11.3 92 96-187 34-161 (222)
160 cd02976 NrdH NrdH-redoxin (Nrd 98.4 2.3E-06 4.9E-11 53.4 7.8 68 101-184 2-72 (73)
161 PF07449 HyaE: Hydrogenase-1 e 98.4 2E-06 4.3E-11 58.2 7.9 87 83-174 16-104 (107)
162 PF13462 Thioredoxin_4: Thiore 98.4 7.9E-06 1.7E-10 59.2 11.2 84 95-187 10-162 (162)
163 cd02983 P5_C P5 family, C-term 98.4 1.1E-05 2.4E-10 56.9 11.0 105 76-189 3-115 (130)
164 PRK13191 putative peroxiredoxi 98.3 1.1E-05 2.3E-10 61.9 11.4 91 96-186 32-158 (215)
165 PRK10877 protein disulfide iso 98.3 3.7E-06 8E-11 65.1 8.8 82 95-187 105-229 (232)
166 PTZ00137 2-Cys peroxiredoxin; 98.3 1.1E-05 2.3E-10 63.4 11.3 74 96-169 97-205 (261)
167 cd03020 DsbA_DsbC_DsbG DsbA fa 98.3 3E-06 6.5E-11 64.0 7.4 79 95-185 75-197 (197)
168 PTZ00253 tryparedoxin peroxida 98.3 1.8E-05 3.9E-10 59.9 11.3 90 96-185 35-160 (199)
169 cd03019 DsbA_DsbA DsbA family, 98.3 9.4E-06 2E-10 59.8 9.6 41 96-136 14-54 (178)
170 KOG4277 Uncharacterized conser 98.3 8.2E-06 1.8E-10 64.3 9.4 134 26-187 94-229 (468)
171 PF00462 Glutaredoxin: Glutare 98.3 1.1E-05 2.4E-10 48.8 7.9 57 101-165 1-60 (60)
172 TIGR02183 GRXA Glutaredoxin, G 98.2 8.8E-06 1.9E-10 53.2 7.9 75 101-188 2-81 (86)
173 cd02981 PDI_b_family Protein D 98.2 2.3E-05 5E-10 52.0 9.6 93 79-187 3-96 (97)
174 cd03419 GRX_GRXh_1_2_like Glut 98.2 9E-06 1.9E-10 52.2 6.6 58 101-164 2-63 (82)
175 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 2.9E-05 6.3E-10 53.3 8.8 96 83-189 6-108 (111)
176 PRK11657 dsbG disulfide isomer 98.1 2.7E-05 5.9E-10 61.0 9.7 84 96-186 116-249 (251)
177 PF01216 Calsequestrin: Calseq 98.1 3.8E-05 8.2E-10 61.7 10.3 96 82-188 40-143 (383)
178 PRK15317 alkyl hydroperoxide r 98.1 3.8E-05 8.2E-10 66.3 11.3 72 97-174 116-187 (517)
179 TIGR02190 GlrX-dom Glutaredoxi 98.1 2.6E-05 5.5E-10 50.1 7.2 61 96-164 5-67 (79)
180 cd03073 PDI_b'_ERp72_ERp57 PDI 98.1 4.5E-05 9.7E-10 52.3 8.7 74 110-189 31-111 (111)
181 PRK10954 periplasmic protein d 98.0 4.3E-05 9.4E-10 58.1 9.1 41 97-137 37-80 (207)
182 cd02066 GRX_family Glutaredoxi 98.0 3.9E-05 8.6E-10 47.4 7.1 58 101-166 2-62 (72)
183 PHA03050 glutaredoxin; Provisi 97.9 6.7E-05 1.5E-09 51.2 7.8 61 101-166 15-81 (108)
184 PRK10329 glutaredoxin-like pro 97.9 0.00024 5.1E-09 45.9 9.4 71 101-187 3-75 (81)
185 cd03029 GRX_hybridPRX5 Glutare 97.9 0.00014 3E-09 45.6 7.7 67 101-185 3-71 (72)
186 KOG3170 Conserved phosducin-li 97.8 0.00012 2.6E-09 54.5 8.0 105 75-186 91-198 (240)
187 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00062 1.3E-08 46.9 10.8 96 83-188 11-118 (126)
188 cd02972 DsbA_family DsbA famil 97.8 0.0001 2.2E-09 48.2 6.8 59 101-159 1-90 (98)
189 TIGR00365 monothiol glutaredox 97.8 0.00029 6.4E-09 47.0 9.0 68 85-165 4-78 (97)
190 TIGR02194 GlrX_NrdH Glutaredox 97.8 0.00014 3.1E-09 45.6 7.1 61 102-173 2-65 (72)
191 TIGR02189 GlrX-like_plant Glut 97.8 0.00011 2.4E-09 49.3 6.5 57 101-165 10-72 (99)
192 cd03418 GRX_GRXb_1_3_like Glut 97.8 0.00024 5.3E-09 44.7 7.8 57 101-165 2-62 (75)
193 TIGR03140 AhpF alkyl hydropero 97.8 0.00037 7.9E-09 60.2 11.4 78 97-180 117-194 (515)
194 TIGR02181 GRX_bact Glutaredoxi 97.7 0.00016 3.5E-09 46.1 6.6 57 101-165 1-60 (79)
195 TIGR03143 AhpF_homolog putativ 97.7 0.00039 8.4E-09 60.6 11.0 96 84-187 355-452 (555)
196 cd03027 GRX_DEP Glutaredoxin ( 97.7 0.0003 6.5E-09 44.2 7.7 57 101-165 3-62 (73)
197 cd03028 GRX_PICOT_like Glutare 97.6 0.00045 9.7E-09 45.4 7.6 62 96-165 6-74 (90)
198 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00077 1.7E-08 44.8 8.2 99 79-186 5-109 (112)
199 KOG2603 Oligosaccharyltransfer 97.5 0.00061 1.3E-08 54.1 8.4 107 77-187 42-164 (331)
200 PF05768 DUF836: Glutaredoxin- 97.5 0.00036 7.9E-09 44.9 6.1 76 101-186 2-81 (81)
201 KOG1752 Glutaredoxin and relat 97.5 0.00085 1.8E-08 45.3 7.7 69 85-165 6-78 (104)
202 PRK10638 glutaredoxin 3; Provi 97.5 0.0011 2.3E-08 42.8 7.5 57 101-165 4-63 (83)
203 COG0695 GrxC Glutaredoxin and 97.4 0.0013 2.9E-08 42.2 7.1 56 101-164 3-63 (80)
204 PRK10824 glutaredoxin-4; Provi 97.3 0.0018 4E-08 44.5 7.9 70 84-166 6-82 (115)
205 PF00837 T4_deiodinase: Iodoth 97.3 0.0031 6.7E-08 48.6 9.3 49 85-137 94-142 (237)
206 cd03066 PDI_b_Calsequestrin_mi 97.2 0.0099 2.2E-07 39.9 9.9 95 78-188 3-100 (102)
207 PF13743 Thioredoxin_5: Thiore 97.1 0.0026 5.6E-08 47.2 7.2 33 103-135 2-34 (176)
208 cd02990 UAS_FAF1 UAS family, F 97.1 0.035 7.5E-07 39.4 12.4 99 85-186 5-134 (136)
209 COG1331 Highly conserved prote 97.0 0.0025 5.3E-08 55.8 7.3 79 83-166 33-123 (667)
210 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.013 2.8E-07 39.5 8.8 94 78-188 3-103 (104)
211 COG1225 Bcp Peroxiredoxin [Pos 96.9 0.033 7.2E-07 40.4 11.1 92 95-187 28-154 (157)
212 PF01323 DSBA: DSBA-like thior 96.8 0.021 4.6E-07 42.3 10.0 27 100-126 1-27 (193)
213 PF13848 Thioredoxin_6: Thiore 96.8 0.014 3E-07 42.9 8.7 66 114-188 7-74 (184)
214 cd03007 PDI_a_ERp29_N PDIa fam 96.8 0.00036 7.7E-09 48.1 0.0 44 10-53 52-105 (116)
215 KOG0912 Thiol-disulfide isomer 96.6 0.002 4.4E-08 51.2 3.3 139 24-187 64-206 (375)
216 PRK12759 bifunctional gluaredo 96.4 0.017 3.6E-07 48.6 7.6 57 101-165 4-71 (410)
217 cd03065 PDI_b_Calsequestrin_N 96.4 0.0013 2.8E-08 45.7 0.8 32 22-53 77-108 (120)
218 KOG1731 FAD-dependent sulfhydr 96.3 0.0039 8.3E-08 53.5 3.6 156 13-186 96-270 (606)
219 COG1651 DsbG Protein-disulfide 96.1 0.059 1.3E-06 41.8 8.9 35 144-187 207-241 (244)
220 cd02974 AhpF_NTD_N Alkyl hydro 96.1 0.23 5E-06 32.8 10.4 86 83-188 7-93 (94)
221 cd03031 GRX_GRX_like Glutaredo 95.5 0.092 2E-06 37.8 7.3 51 108-166 15-72 (147)
222 cd03068 PDI_b_ERp72 PDIb famil 95.4 0.5 1.1E-05 31.9 10.5 96 78-188 3-107 (107)
223 cd03006 PDI_a_EFP1_N PDIa fami 95.0 0.0095 2.1E-07 40.9 0.9 31 23-53 74-106 (113)
224 cd03060 GST_N_Omega_like GST_N 94.8 0.18 3.8E-06 31.1 6.3 58 102-164 2-59 (71)
225 cd02996 PDI_a_ERp44 PDIa famil 94.7 0.012 2.6E-07 39.6 0.6 41 10-51 57-99 (108)
226 KOG2507 Ubiquitin regulatory p 94.6 0.43 9.3E-06 39.9 9.5 98 85-183 7-109 (506)
227 cd03013 PRX5_like Peroxiredoxi 94.6 0.16 3.6E-06 36.7 6.5 75 97-171 29-140 (155)
228 KOG2640 Thioredoxin [Function 94.2 0.018 3.9E-07 45.9 0.8 84 97-187 76-160 (319)
229 cd03003 PDI_a_ERdj5_N PDIa fam 94.1 0.013 2.9E-07 38.9 -0.1 29 22-50 62-91 (101)
230 PRK15317 alkyl hydroperoxide r 94.1 0.6 1.3E-05 40.5 10.0 85 83-187 7-92 (517)
231 cd02978 KaiB_like KaiB-like fa 94.0 0.26 5.7E-06 30.9 5.6 57 101-158 4-61 (72)
232 PF06491 Disulph_isomer: Disul 93.9 1.5 3.2E-05 30.7 11.5 108 76-188 17-135 (136)
233 cd02999 PDI_a_ERp44_like PDIa 93.6 0.027 6E-07 37.6 0.7 31 21-51 61-91 (100)
234 TIGR03140 AhpF alkyl hydropero 93.4 0.97 2.1E-05 39.2 10.1 86 83-187 7-93 (515)
235 cd02994 PDI_a_TMX PDIa family, 93.2 0.045 9.7E-07 36.2 1.2 29 22-50 61-89 (101)
236 PF01216 Calsequestrin: Calseq 93.1 0.82 1.8E-05 37.4 8.3 139 26-188 106-246 (383)
237 TIGR02742 TrbC_Ftype type-F co 93.0 1.2 2.6E-05 31.4 8.2 83 83-174 11-104 (130)
238 PF09673 TrbC_Ftype: Type-F co 92.9 1.2 2.6E-05 30.5 8.0 71 83-161 10-80 (113)
239 cd03004 PDI_a_ERdj5_C PDIa fam 92.8 0.038 8.2E-07 36.8 0.5 30 22-51 63-94 (104)
240 COG3019 Predicted metal-bindin 92.5 1.9 4.1E-05 30.6 8.5 74 98-187 25-102 (149)
241 cd02977 ArsC_family Arsenate R 92.5 0.11 2.3E-06 35.0 2.3 79 102-187 2-85 (105)
242 cd03002 PDI_a_MPD1_like PDI fa 92.3 0.045 9.8E-07 36.6 0.3 23 21-43 63-85 (109)
243 cd03001 PDI_a_P5 PDIa family, 92.2 0.053 1.2E-06 35.8 0.6 30 22-51 62-93 (103)
244 TIGR02654 circ_KaiB circadian 92.1 0.61 1.3E-05 30.4 5.3 73 100-174 5-78 (87)
245 COG1999 Uncharacterized protei 92.0 4.3 9.2E-05 30.9 10.8 92 95-186 65-205 (207)
246 PF00085 Thioredoxin: Thioredo 92.0 0.069 1.5E-06 35.0 0.9 29 22-50 61-90 (103)
247 PRK09301 circadian clock prote 91.6 0.69 1.5E-05 31.0 5.3 76 97-174 5-81 (103)
248 cd03036 ArsC_like Arsenate Red 91.5 0.15 3.1E-06 34.8 2.1 56 102-163 2-61 (111)
249 PF06053 DUF929: Domain of unk 91.2 0.8 1.7E-05 35.9 6.2 58 95-160 56-113 (249)
250 cd02997 PDI_a_PDIR PDIa family 91.2 0.1 2.2E-06 34.4 1.0 30 21-50 64-94 (104)
251 cd03059 GST_N_SspA GST_N famil 91.1 0.96 2.1E-05 27.6 5.5 52 102-157 2-53 (73)
252 cd03005 PDI_a_ERp46 PDIa famil 90.9 0.15 3.2E-06 33.5 1.6 30 22-51 63-93 (102)
253 cd03051 GST_N_GTT2_like GST_N 90.9 0.47 1E-05 28.9 3.9 57 102-163 2-61 (74)
254 PF02630 SCO1-SenC: SCO1/SenC; 90.8 3.7 8.1E-05 30.2 9.2 44 96-139 51-98 (174)
255 COG4545 Glutaredoxin-related p 90.8 0.82 1.8E-05 28.8 4.7 57 102-165 5-76 (85)
256 PRK11509 hydrogenase-1 operon 90.8 0.12 2.5E-06 36.5 1.1 25 21-45 80-104 (132)
257 cd02965 HyaE HyaE family; HyaE 90.6 0.086 1.9E-06 36.0 0.3 23 23-45 74-96 (111)
258 cd02985 TRX_CDSP32 TRX family, 90.6 0.11 2.3E-06 34.8 0.7 27 23-49 62-89 (103)
259 cd03000 PDI_a_TMX3 PDIa family 90.5 0.15 3.2E-06 34.0 1.4 29 22-50 62-90 (104)
260 PHA03075 glutaredoxin-like pro 90.3 0.59 1.3E-05 32.0 4.0 36 98-137 2-37 (123)
261 cd02956 ybbN ybbN protein fami 90.0 0.14 3E-06 33.4 0.9 29 22-50 56-85 (96)
262 cd03041 GST_N_2GST_N GST_N fam 89.9 2.6 5.6E-05 26.3 6.8 51 102-158 3-56 (77)
263 TIGR01126 pdi_dom protein disu 89.8 0.13 2.9E-06 33.6 0.7 29 22-50 59-88 (102)
264 cd03040 GST_N_mPGES2 GST_N fam 89.7 3.3 7.2E-05 25.6 8.3 52 101-159 2-54 (77)
265 PTZ00443 Thioredoxin domain-co 89.6 0.15 3.3E-06 39.3 1.0 29 22-50 96-124 (224)
266 PF13417 GST_N_3: Glutathione 89.4 3.5 7.6E-05 25.4 7.3 57 103-165 1-57 (75)
267 cd02992 PDI_a_QSOX PDIa family 89.4 0.098 2.1E-06 35.8 -0.2 24 21-44 67-90 (114)
268 PRK12559 transcriptional regul 89.3 0.34 7.4E-06 34.1 2.5 34 101-140 2-35 (131)
269 cd00570 GST_N_family Glutathio 89.1 1.7 3.7E-05 25.5 5.3 56 103-164 3-59 (71)
270 cd03035 ArsC_Yffb Arsenate Red 89.0 0.67 1.4E-05 31.3 3.6 34 102-141 2-35 (105)
271 cd02963 TRX_DnaJ TRX domain, D 88.8 0.19 4.1E-06 34.1 0.8 26 22-47 69-94 (111)
272 COG2761 FrnE Predicted dithiol 88.6 0.87 1.9E-05 35.1 4.4 39 144-186 176-214 (225)
273 COG0386 BtuE Glutathione perox 88.3 5.6 0.00012 28.8 8.0 44 95-139 23-67 (162)
274 PF13778 DUF4174: Domain of un 88.3 6.5 0.00014 27.0 8.9 86 99-188 11-111 (118)
275 cd03037 GST_N_GRX2 GST_N famil 87.7 2.8 6.1E-05 25.5 5.7 56 103-164 3-58 (71)
276 cd02961 PDI_a_family Protein D 87.7 0.19 4E-06 32.4 0.3 21 22-42 61-81 (101)
277 cd03032 ArsC_Spx Arsenate Redu 87.4 0.54 1.2E-05 32.1 2.5 34 101-140 2-35 (115)
278 cd02998 PDI_a_ERp38 PDIa famil 87.3 0.25 5.4E-06 32.4 0.7 23 21-43 64-86 (105)
279 COG3531 Predicted protein-disu 87.2 1.2 2.7E-05 33.5 4.3 41 143-187 165-207 (212)
280 cd02993 PDI_a_APS_reductase PD 87.2 0.28 6E-06 33.0 0.9 28 23-50 68-98 (109)
281 cd02957 Phd_like Phosducin (Ph 86.8 0.38 8.2E-06 32.6 1.4 22 23-44 67-88 (113)
282 PTZ00051 thioredoxin; Provisio 86.4 0.27 5.8E-06 32.1 0.5 29 22-50 61-90 (98)
283 PRK01655 spxA transcriptional 86.3 1.3 2.8E-05 31.1 4.0 35 101-141 2-36 (131)
284 cd03055 GST_N_Omega GST_N fami 86.0 5 0.00011 25.8 6.4 54 101-158 19-72 (89)
285 PRK10996 thioredoxin 2; Provis 85.9 0.34 7.4E-06 34.3 0.9 23 22-44 96-118 (139)
286 cd02984 TRX_PICOT TRX domain, 85.9 0.37 8.1E-06 31.3 1.0 23 22-44 58-80 (97)
287 cd02948 TRX_NDPK TRX domain, T 85.2 0.35 7.7E-06 32.1 0.6 23 23-45 62-84 (102)
288 cd03024 DsbA_FrnE DsbA family, 85.1 1.8 4E-05 32.1 4.6 34 144-185 167-200 (201)
289 cd02954 DIM1 Dim1 family; Dim1 85.0 0.48 1E-05 32.6 1.2 26 22-47 58-83 (114)
290 cd03045 GST_N_Delta_Epsilon GS 84.9 1.4 3E-05 27.0 3.2 56 102-163 2-60 (74)
291 PRK00366 ispG 4-hydroxy-3-meth 84.3 2.7 5.8E-05 34.6 5.3 75 109-183 271-355 (360)
292 TIGR01617 arsC_related transcr 84.3 1.8 3.8E-05 29.6 3.8 34 102-141 2-35 (117)
293 PHA02278 thioredoxin-like prot 84.3 0.45 9.8E-06 32.0 0.8 22 24-45 64-85 (103)
294 cd03025 DsbA_FrnE_like DsbA fa 84.3 1.7 3.7E-05 32.1 4.0 30 101-130 3-32 (193)
295 cd03074 PDI_b'_Calsequestrin_C 84.1 11 0.00024 25.6 9.6 90 96-189 19-120 (120)
296 cd02947 TRX_family TRX family; 83.8 0.69 1.5E-05 29.0 1.5 23 22-44 53-75 (93)
297 cd02995 PDI_a_PDI_a'_C PDIa fa 83.7 0.67 1.4E-05 30.3 1.5 28 23-50 64-94 (104)
298 PF07689 KaiB: KaiB domain; I 83.4 0.42 9.1E-06 30.8 0.4 51 106-157 5-56 (82)
299 PRK09381 trxA thioredoxin; Pro 82.0 0.95 2.1E-05 30.2 1.7 24 22-45 65-88 (109)
300 TIGR01068 thioredoxin thioredo 81.8 0.77 1.7E-05 29.7 1.2 23 22-44 58-80 (101)
301 cd03022 DsbA_HCCA_Iso DsbA fam 81.6 2.6 5.7E-05 31.0 4.1 33 144-185 159-191 (192)
302 PF06953 ArsD: Arsenical resis 79.9 7.7 0.00017 27.0 5.6 64 115-186 22-99 (123)
303 KOG1422 Intracellular Cl- chan 79.4 14 0.00031 28.2 7.3 65 108-188 20-84 (221)
304 PRK13344 spxA transcriptional 78.7 4.4 9.4E-05 28.5 4.2 34 101-140 2-35 (132)
305 COG0278 Glutaredoxin-related p 78.6 17 0.00037 24.3 6.7 72 84-165 6-82 (105)
306 cd03056 GST_N_4 GST_N family, 78.3 5.2 0.00011 24.1 4.1 57 102-164 2-61 (73)
307 TIGR00424 APS_reduc 5'-adenyly 77.9 1.1 2.3E-05 38.4 1.1 25 25-49 421-447 (463)
308 COG0821 gcpE 1-hydroxy-2-methy 76.9 7.2 0.00016 31.9 5.4 75 109-187 264-349 (361)
309 PRK13730 conjugal transfer pil 76.8 31 0.00066 26.3 8.3 33 140-174 151-183 (212)
310 KOG0911 Glutaredoxin-related p 76.7 17 0.00037 28.0 7.1 62 96-164 137-204 (227)
311 cd02953 DsbDgamma DsbD gamma f 75.3 0.74 1.6E-05 30.5 -0.5 20 22-41 62-81 (104)
312 cd02949 TRX_NTR TRX domain, no 73.8 1.4 3.1E-05 28.7 0.7 23 22-44 57-79 (97)
313 KOG1651 Glutathione peroxidase 73.6 20 0.00044 26.3 6.5 44 96-139 33-77 (171)
314 cd02989 Phd_like_TxnDC9 Phosdu 73.5 2.4 5.1E-05 28.8 1.7 22 24-45 67-88 (113)
315 KOG0907 Thioredoxin [Posttrans 72.5 1.7 3.8E-05 29.3 0.8 24 21-44 63-86 (106)
316 cd02962 TMX2 TMX2 family; comp 72.5 1.3 2.9E-05 32.0 0.3 23 23-45 93-121 (152)
317 PF04551 GcpE: GcpE protein; 71.9 4.7 0.0001 33.2 3.3 76 109-188 271-358 (359)
318 PLN02309 5'-adenylylsulfate re 71.0 2.4 5.2E-05 36.3 1.5 29 22-50 411-442 (457)
319 PF06764 DUF1223: Protein of u 69.7 47 0.001 25.2 9.1 67 101-173 2-87 (202)
320 cd03025 DsbA_FrnE_like DsbA fa 67.7 10 0.00022 27.8 4.2 20 144-163 161-180 (193)
321 PRK09481 sspA stringent starva 67.2 38 0.00082 25.3 7.3 64 96-165 6-69 (211)
322 cd03052 GST_N_GDAP1 GST_N fami 66.8 27 0.00058 21.4 6.9 57 102-164 2-61 (73)
323 PF11287 DUF3088: Protein of u 66.4 12 0.00026 25.6 3.8 52 108-160 23-76 (112)
324 cd02987 Phd_like_Phd Phosducin 66.1 3.2 6.8E-05 30.7 1.1 23 23-45 126-148 (175)
325 PLN00410 U5 snRNP protein, DIM 66.0 7.5 0.00016 27.8 3.0 28 20-47 65-94 (142)
326 PF04592 SelP_N: Selenoprotein 65.8 13 0.00029 28.8 4.5 47 95-141 24-74 (238)
327 cd02950 TxlA TRX-like protein 65.0 2.7 5.8E-05 29.8 0.6 28 23-50 67-96 (142)
328 COG5429 Uncharacterized secret 65.0 31 0.00066 26.9 6.2 65 98-164 42-123 (261)
329 cd03061 GST_N_CLIC GST_N famil 64.2 26 0.00057 22.9 5.1 52 107-164 20-71 (91)
330 cd03049 GST_N_3 GST_N family, 63.8 19 0.00042 21.7 4.3 59 103-164 3-61 (73)
331 cd03033 ArsC_15kD Arsenate Red 63.5 14 0.00029 25.2 3.8 34 101-140 2-35 (113)
332 cd03053 GST_N_Phi GST_N family 63.1 24 0.00052 21.4 4.7 58 101-164 2-62 (76)
333 COG4752 Uncharacterized protei 63.0 11 0.00024 27.1 3.3 25 83-110 122-146 (190)
334 PF00255 GSHPx: Glutathione pe 61.3 35 0.00076 23.1 5.5 45 95-140 19-64 (108)
335 PF07449 HyaE: Hydrogenase-1 e 60.0 8.6 0.00019 26.1 2.3 20 25-44 75-94 (107)
336 cd02988 Phd_like_VIAF Phosduci 59.6 7.2 0.00016 29.3 2.1 19 26-44 146-164 (192)
337 KOG0910 Thioredoxin-like prote 59.0 4.6 0.0001 29.1 0.9 22 24-45 107-128 (150)
338 PRK01045 ispH 4-hydroxy-3-meth 56.2 99 0.0022 25.0 8.1 102 81-187 166-281 (298)
339 TIGR00612 ispG_gcpE 1-hydroxy- 55.8 15 0.00033 30.1 3.4 73 97-171 255-335 (346)
340 KOG1364 Predicted ubiquitin re 54.0 18 0.0004 29.7 3.6 55 132-187 135-191 (356)
341 PF04134 DUF393: Protein of un 53.9 20 0.00044 23.9 3.4 63 104-171 2-67 (114)
342 cd03034 ArsC_ArsC Arsenate Red 53.6 23 0.00049 23.9 3.6 33 102-140 2-34 (112)
343 TIGR00014 arsC arsenate reduct 53.4 23 0.0005 24.0 3.6 33 102-140 2-34 (114)
344 PF02401 LYTB: LytB protein; 52.6 24 0.00052 28.2 4.0 102 81-187 165-280 (281)
345 PF08806 Sep15_SelM: Sep15/Sel 52.3 23 0.00051 22.4 3.2 33 152-188 41-75 (78)
346 PF09822 ABC_transp_aux: ABC-t 51.1 1.2E+02 0.0026 23.8 11.8 57 96-152 23-88 (271)
347 cd02986 DLP Dim1 family, Dim1- 50.2 9.3 0.0002 26.2 1.2 32 19-50 55-86 (114)
348 COG3634 AhpF Alkyl hydroperoxi 50.0 1.1E+02 0.0024 25.8 7.4 73 96-174 115-187 (520)
349 COG3411 Ferredoxin [Energy pro 49.6 33 0.00071 20.9 3.3 31 151-189 15-45 (64)
350 PRK10026 arsenate reductase; P 49.5 17 0.00036 26.0 2.4 34 101-140 4-37 (141)
351 COG2143 Thioredoxin-related pr 49.5 14 0.0003 27.0 2.0 19 26-44 109-127 (182)
352 KOG2792 Putative cytochrome C 46.0 1.1E+02 0.0025 24.2 6.6 91 96-186 138-276 (280)
353 cd03021 DsbA_GSTK DsbA family, 45.4 30 0.00065 26.0 3.5 37 144-185 171-208 (209)
354 PF10865 DUF2703: Domain of un 43.8 45 0.00098 23.1 3.8 57 107-169 13-76 (120)
355 KOG2244 Highly conserved prote 43.4 60 0.0013 28.7 5.2 74 83-160 102-185 (786)
356 COG1393 ArsC Arsenate reductas 43.0 31 0.00067 23.7 2.9 21 101-121 3-23 (117)
357 TIGR00216 ispH_lytB (E)-4-hydr 42.8 1.8E+02 0.0038 23.4 7.5 102 81-187 164-279 (280)
358 TIGR02743 TraW type-F conjugat 41.9 66 0.0014 24.5 4.7 39 119-164 158-196 (202)
359 cd03050 GST_N_Theta GST_N fami 41.3 76 0.0016 19.1 4.4 56 103-164 3-61 (76)
360 cd03058 GST_N_Tau GST_N family 41.0 80 0.0017 18.9 7.1 55 103-163 3-58 (74)
361 COG3531 Predicted protein-disu 37.8 31 0.00067 26.2 2.4 27 100-126 3-29 (212)
362 PF04908 SH3BGR: SH3-binding, 37.8 40 0.00087 22.4 2.7 41 102-142 3-44 (99)
363 PRK10853 putative reductase; P 37.8 54 0.0012 22.4 3.5 34 101-140 2-35 (118)
364 COG4604 CeuD ABC-type enteroch 37.2 1.6E+02 0.0036 22.7 6.1 53 110-173 169-221 (252)
365 PF03960 ArsC: ArsC family; I 37.2 66 0.0014 21.4 3.8 32 104-141 1-32 (110)
366 PRK13738 conjugal transfer pil 35.4 62 0.0014 24.7 3.8 40 120-165 157-197 (209)
367 PF00352 TBP: Transcription fa 35.1 50 0.0011 21.1 2.9 29 153-183 49-77 (86)
368 cd05855 Ig_TrkB_d5 Fifth domai 33.7 15 0.00032 23.2 0.1 20 25-44 2-23 (79)
369 PF02702 KdpD: Osmosensitive K 33.3 2.2E+02 0.0048 21.8 8.2 71 96-167 3-73 (211)
370 TIGR01616 nitro_assoc nitrogen 32.6 90 0.002 21.7 4.0 33 101-139 3-35 (126)
371 cd03022 DsbA_HCCA_Iso DsbA fam 32.4 71 0.0015 23.1 3.7 29 103-131 3-31 (192)
372 COG2101 SPT15 TATA-box binding 31.7 1.1E+02 0.0024 22.8 4.3 31 154-186 54-84 (185)
373 PF09695 YtfJ_HI0045: Bacteria 31.6 1.9E+02 0.004 21.2 5.5 39 144-186 115-155 (160)
374 KOG1672 ATP binding protein [P 30.5 26 0.00055 26.5 1.0 26 25-50 130-155 (211)
375 COG5494 Predicted thioredoxin/ 30.2 2.4E+02 0.0052 21.8 6.0 70 104-186 16-85 (265)
376 PF07700 HNOB: Heme NO binding 30.1 1.3E+02 0.0028 21.8 4.7 43 96-138 126-169 (171)
377 PF02114 Phosducin: Phosducin; 28.5 33 0.00072 27.2 1.3 21 24-44 190-210 (265)
378 PRK15113 glutathione S-transfe 27.7 1.6E+02 0.0034 22.0 5.0 62 98-165 3-69 (214)
379 TIGR00862 O-ClC intracellular 27.3 3E+02 0.0064 21.4 6.5 53 107-165 17-69 (236)
380 PRK12360 4-hydroxy-3-methylbut 25.0 3.6E+02 0.0079 21.6 8.5 100 81-187 167-280 (281)
381 cd06403 PB1_Par6 The PB1 domai 24.6 81 0.0017 20.1 2.3 24 74-101 50-73 (80)
382 COG2761 FrnE Predicted dithiol 24.0 1.5E+02 0.0032 23.0 4.1 32 99-130 6-37 (225)
383 KOG0908 Thioredoxin-like prote 23.9 56 0.0012 25.9 1.8 25 26-50 68-93 (288)
384 cd03024 DsbA_FrnE DsbA family, 23.9 1.1E+02 0.0023 22.5 3.3 25 103-127 3-27 (201)
385 PF14639 YqgF: Holliday-juncti 23.1 1.2E+02 0.0027 21.7 3.4 50 83-137 52-106 (150)
386 PF02484 Rhabdo_NV: Rhabdoviru 23.1 1.1E+02 0.0024 20.0 2.7 41 145-185 16-56 (111)
387 smart00575 ZnF_PMZ plant mutat 23.1 42 0.00092 16.5 0.7 11 25-35 5-15 (28)
388 smart00243 GAS2 Growth-Arrest- 22.0 2.1E+02 0.0046 17.9 3.8 23 160-188 44-66 (73)
389 KOG4163 Prolyl-tRNA synthetase 21.9 85 0.0018 27.0 2.6 29 75-111 465-493 (551)
390 PRK10387 glutaredoxin 2; Provi 21.8 3.3E+02 0.0071 19.9 6.0 56 103-164 3-58 (210)
391 TIGR02652 conserved hypothetic 21.6 36 0.00077 24.2 0.3 13 108-120 11-23 (163)
392 PF09654 DUF2396: Protein of u 21.6 35 0.00075 24.3 0.2 13 108-120 8-20 (161)
393 KOG0855 Alkyl hydroperoxide re 21.0 3.6E+02 0.0078 20.1 8.3 40 96-138 89-133 (211)
394 cd00652 TBP_TLF TATA box bindi 20.7 2.2E+02 0.0047 21.0 4.4 31 153-185 47-77 (174)
395 cd04518 TBP_archaea archaeal T 20.7 2.1E+02 0.0045 21.1 4.3 30 154-185 48-77 (174)
396 cd03042 GST_N_Zeta GST_N famil 20.5 1.5E+02 0.0033 17.3 3.1 50 104-157 4-56 (73)
397 COG3118 Thioredoxin domain-con 20.4 37 0.00081 27.4 0.2 28 24-51 89-117 (304)
398 PF12617 LdpA_C: Iron-Sulfur b 20.4 2.3E+02 0.0049 21.2 4.3 60 110-170 18-82 (183)
399 PLN02378 glutathione S-transfe 20.1 2.9E+02 0.0064 20.6 5.1 51 107-163 18-68 (213)
400 KOG4079 Putative mitochondrial 20.0 1.1E+02 0.0025 21.7 2.5 33 150-187 71-105 (169)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-27 Score=167.74 Aligned_cols=105 Identities=33% Similarity=0.675 Sum_probs=96.6
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
...+.+.++|++.+. +++.||+|+|||+||+||+.+.|.+++++.++.+++.++++|.|++.+ ++.+|+|.++||+
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEE
Confidence 344567889988876 679999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
++|+||+.+.++.|..+. +.|+++|+++|
T Consensus 120 lvfknGe~~d~~vG~~~~----~~l~~~i~k~l 148 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPK----EQLRSLIKKFL 148 (150)
T ss_pred EEEECCEEeeeecccCCH----HHHHHHHHHHh
Confidence 999999999999999999 88888888764
No 2
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=1.6e-24 Score=146.97 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQ 157 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~ 157 (189)
++.++|++.+ .++++++|+|||+||+||+.+.|.++++++++..++.|+++|++.++ .+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 3567899998 68999999999999999999999999999886566789999999862 3599999999999999
Q ss_pred EEeCCeEEEEEeCCCcchhhHHHHHHH
Q 029703 158 IWKDGEMKSEVIGGHKAWLVIEEVREM 184 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~ 184 (189)
+|++|+.+.++.|..+. +.|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~----~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTP----MQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCH----HHHHhh
Confidence 99999999999998877 666554
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=7.6e-25 Score=150.04 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.++|+..+.. ..++++||+|||+||+||+.|.|.++++++++.+.+.|++||++.+++ ++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECC
Confidence 5678888842 368899999999999999999999999999997778999999999995 9999999999999999999
Q ss_pred eEEEEEeCCCcc
Q 029703 163 EMKSEVIGGHKA 174 (189)
Q Consensus 163 ~~~~~~~g~~~~ 174 (189)
+.+.+..|..+.
T Consensus 79 ~~v~~~~G~~~~ 90 (114)
T cd02954 79 KHMKIDLGTGNN 90 (114)
T ss_pred EEEEEEcCCCCC
Confidence 999999997654
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=2e-23 Score=141.23 Aligned_cols=100 Identities=31% Similarity=0.593 Sum_probs=92.2
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.+.++|++.+. .++++++|+||++||++|+.+.|.|+++++.+.+++.|+.+|++.++. ++++|+|.++||+++|+
T Consensus 4 lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 4 LTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp ESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEEEEEE
T ss_pred CCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEEEEEE
Confidence 34779999993 238999999999999999999999999999997699999999999885 99999999999999999
Q ss_pred CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 161 DGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|+...++.|..+. +.|.+||+++
T Consensus 80 ~g~~~~~~~g~~~~----~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNA----ESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSH----HHHHHHHHHH
T ss_pred CCcEEEEEECCCCH----HHHHHHHHcC
Confidence 99999999999888 9999999875
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=7.6e-24 Score=145.97 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=84.7
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH-HhCCCCCCCeEEEEeC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV-KRGNISKMPTIQIWKD 161 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~-~~~~i~~~Pt~~~~~~ 161 (189)
.++|++++.-. .+++++||+|||+||++|+.+.|.++++++++++.+.|++||++.+.+ ++ ++|+|.++||+++|++
T Consensus 16 ~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PTl~lf~~ 93 (113)
T cd03006 16 KGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPVIHLYYR 93 (113)
T ss_pred hhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCEEEEEEC
Confidence 66888863111 689999999999999999999999999999998789999999999885 88 5899999999999999
Q ss_pred CeEEEEEeCCCcchhhHHHHHHH
Q 029703 162 GEMKSEVIGGHKAWLVIEEVREM 184 (189)
Q Consensus 162 G~~~~~~~g~~~~~~~~~~l~~~ 184 (189)
|+...++.|..+. +.|..|
T Consensus 94 g~~~~~y~G~~~~----~~i~~~ 112 (113)
T cd03006 94 SRGPIEYKGPMRA----PYMEKF 112 (113)
T ss_pred CccceEEeCCCCH----HHHHhh
Confidence 9988999999988 777665
No 6
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=142.52 Aligned_cols=99 Identities=34% Similarity=0.643 Sum_probs=85.1
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.++++.....+...+++++|+|||+|||||+.+.|.+.+++.+|.+ +.|+++|+|+.. ++++.++|..+||+++|++|
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~-~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELE-EVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCH-hHHHhcCceEeeEEEEEECC
Confidence 3455555544445679999999999999999999999999999955 999999999955 59999999999999999999
Q ss_pred eEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 163 EMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 163 ~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+.+.++.|... ++|++.|.++
T Consensus 85 ~~~~~~vGa~~-----~~l~~~i~~~ 105 (106)
T KOG0907|consen 85 EEVDEVVGANK-----AELEKKIAKH 105 (106)
T ss_pred EEEEEEecCCH-----HHHHHHHHhc
Confidence 99999999877 4777777654
No 7
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.8e-24 Score=164.51 Aligned_cols=106 Identities=26% Similarity=0.575 Sum_probs=96.6
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+..++ ..+|++.+..+ +..+||+|+||+|||+||+.+.|.+++++.++++++.+++||||.++. ++.+|||+++||+
T Consensus 25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV 101 (304)
T ss_pred ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence 34344 67998888665 567799999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+.|++|+.+..+.|.... ++|++||++++
T Consensus 102 ~af~dGqpVdgF~G~qPe----sqlr~~ld~~~ 130 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPE----SQLRQFLDKVL 130 (304)
T ss_pred EEeeCCcCccccCCCCcH----HHHHHHHHHhc
Confidence 999999999999999998 89999998864
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1.3e-23 Score=142.43 Aligned_cols=97 Identities=15% Similarity=0.366 Sum_probs=87.4
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
..+ +.++|++.+ .++++++|+||++||++|+.+.|.++++++.+++.+.|+++|++.++. ++++|+|+++||++
T Consensus 4 ~~l-~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~ 77 (101)
T cd03003 4 VTL-DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSLY 77 (101)
T ss_pred EEc-CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEEE
Confidence 334 477999998 577999999999999999999999999999998889999999999885 99999999999999
Q ss_pred EEeCCeEEEEEeCCCcchhhHHHHHHH
Q 029703 158 IWKDGEMKSEVIGGHKAWLVIEEVREM 184 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~ 184 (189)
+|++|+.+.++.|..+. +.|..|
T Consensus 78 ~~~~g~~~~~~~G~~~~----~~l~~f 100 (101)
T cd03003 78 VFPSGMNPEKYYGDRSK----ESLVKF 100 (101)
T ss_pred EEcCCCCcccCCCCCCH----HHHHhh
Confidence 99999999999999887 666655
No 9
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=4.4e-23 Score=140.41 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=85.2
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~ 159 (189)
+.++|++.+.. ..++++||+|||+||++|+.+.|.++++++++ +++.|+.||+++.. .+++++|+|.++||+++|
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 46789999854 35899999999999999999999999999999 78999999999874 259999999999999999
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
++|+.+.++.|... ++|.+.+..
T Consensus 79 ~~G~~v~~~~G~~~-----~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGIGP-----DELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCCCH-----HHHHHHHHh
Confidence 99999999999776 566665543
No 10
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.91 E-value=4.6e-23 Score=140.07 Aligned_cols=98 Identities=22% Similarity=0.418 Sum_probs=87.2
Q ss_pred ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
.+.+.++|++++ .++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|++ .+ +++++|+|+++||++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~-~~~~~~~v~~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI-DTLKRYRGKCEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH-HHHHHcCCCcCcEEE
Confidence 367789999998 6799999999999999999999999999999864 4789999999 55 489999999999999
Q ss_pred EEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+|++|+.+.+..|. +. +.|.++|++
T Consensus 77 ~~~~g~~~~~~~G~-~~----~~~~~~i~~ 101 (102)
T cd02948 77 FYKNGELVAVIRGA-NA----PLLNKTITE 101 (102)
T ss_pred EEECCEEEEEEecC-Ch----HHHHHHHhh
Confidence 99999999999997 44 778888875
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=2.2e-23 Score=144.75 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~--C~--~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 155 (189)
+.++|++.+. +++.++|++||++||+| |+ ++.|.+.+++.++ .+++.|++||++.+++ ++++|+|.++||
T Consensus 15 t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I~~iPT 90 (120)
T cd03065 15 NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGLDEEDS 90 (120)
T ss_pred ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCCccccE
Confidence 4689999986 56789999999999987 99 8899999999998 7889999999999985 999999999999
Q ss_pred EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+++|++|+.+. +.|.++. +.|.+||++++
T Consensus 91 l~lfk~G~~v~-~~G~~~~----~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIE-YDGEFAA----DTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEE-eeCCCCH----HHHHHHHHHHh
Confidence 99999999887 9999998 88888887653
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.90 E-value=5.8e-23 Score=137.83 Aligned_cols=95 Identities=21% Similarity=0.433 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
+|++.+.. ..+++++|+||++||++|+.+.|.++++++.+.+.+.++++|++.... ++++|+|.++||+++|++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence 56777753 347899999999999999999999999999997789999999999985 999999999999999999999
Q ss_pred EEEEeCCCcchhhHHHHHHHHH
Q 029703 165 KSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 165 ~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+.++.|..+. +.|.+||+
T Consensus 79 ~~~~~g~~~~----~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPE----EQLRQMLD 96 (96)
T ss_pred eeeecCCCCH----HHHHHHhC
Confidence 9999999888 78888764
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=4.2e-23 Score=140.53 Aligned_cols=96 Identities=30% Similarity=0.560 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD 161 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 161 (189)
+.++|++.+. ..+++++|+|||+||++|+.+.|.++++++++.+.+.|+++|++.+++ ++++|+|.++||+++|++
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRLYPG 82 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEEEcC
Confidence 4779999875 457799999999999999999999999999997789999999999885 999999999999999997
Q ss_pred C-eEEEEEeCCCc-chhhHHHHHHHH
Q 029703 162 G-EMKSEVIGGHK-AWLVIEEVREMI 185 (189)
Q Consensus 162 G-~~~~~~~g~~~-~~~~~~~l~~~i 185 (189)
| +.+.++.|..+ . +.|.+||
T Consensus 83 g~~~~~~~~G~~~~~----~~l~~~i 104 (104)
T cd03004 83 NASKYHSYNGWHRDA----DSILEFI 104 (104)
T ss_pred CCCCceEccCCCCCH----HHHHhhC
Confidence 7 88999999876 7 7777764
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=8e-23 Score=140.92 Aligned_cols=101 Identities=16% Similarity=0.366 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
+.++|++.+... ..+++++|+||++||++|+.+.|.++++++++.+ ++.++++|++..+. ++++++|.++||+++|+
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEE
Confidence 466787654321 3689999999999999999999999999999954 59999999999885 99999999999999999
Q ss_pred CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 161 DGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|+.+.++.|..+. +.|.+||+++
T Consensus 88 ~g~~~~~~~G~~~~----~~l~~~i~~~ 111 (111)
T cd02963 88 NGQVTFYHDSSFTK----QHVVDFVRKL 111 (111)
T ss_pred CCEEEEEecCCCCH----HHHHHHHhcC
Confidence 99999999998888 8899998763
No 15
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=1.3e-22 Score=144.00 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=81.7
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+.++.+.++|++.+.. .+++++||+|||+||+||+.+.|.|+++++++++.+.|++||+|++++ ++++|+|++.|++
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCcE
Confidence 4557889999999964 368899999999999999999999999999997779999999999995 9999999988777
Q ss_pred E-EEeCCe-EEEEEeC
Q 029703 157 Q-IWKDGE-MKSEVIG 170 (189)
Q Consensus 157 ~-~~~~G~-~~~~~~g 170 (189)
+ +|++|+ .+.+..|
T Consensus 82 ~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 82 MFFFRNKHIMIDLGTG 97 (142)
T ss_pred EEEEECCeEEEEEecc
Confidence 7 889999 8899999
No 16
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=4.5e-22 Score=142.44 Aligned_cols=99 Identities=28% Similarity=0.535 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD 161 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 161 (189)
+.++|++.+ .++++++|+||++||++|+.+.|.+.++++++.+++.++++|++..++ ++++|+|.++||+++|++
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEEC
Confidence 578999988 679999999999999999999999999999987889999999999885 999999999999999999
Q ss_pred CeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 162 GEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 162 G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
|+.+.++.|..+. +.|.+||++.+
T Consensus 116 G~~v~~~~G~~~~----e~l~~~l~~~~ 139 (139)
T PRK10996 116 GQVVDMLNGAVPK----APFDSWLNEAL 139 (139)
T ss_pred CEEEEEEcCCCCH----HHHHHHHHHhC
Confidence 9999999999888 88999998764
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.89 E-value=5.3e-22 Score=137.16 Aligned_cols=104 Identities=21% Similarity=0.366 Sum_probs=90.3
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 155 (189)
.+..+++.++|.+.+ .++++++|+||++||++|+.+.|.++++++++ +++.|++||++..++ ++++|+|.++||
T Consensus 5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt 78 (113)
T cd02989 5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT 78 (113)
T ss_pred CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence 356778889999999 67899999999999999999999999999998 579999999999985 999999999999
Q ss_pred EEEEeCCeEEEEEeCCCcc----hhhHHHHHHHH
Q 029703 156 IQIWKDGEMKSEVIGGHKA----WLVIEEVREMI 185 (189)
Q Consensus 156 ~~~~~~G~~~~~~~g~~~~----~~~~~~l~~~i 185 (189)
+++|++|+.+.++.|.... +...+.|+.||
T Consensus 79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999999999887542 33445566554
No 18
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.89 E-value=2.3e-22 Score=136.09 Aligned_cols=92 Identities=14% Similarity=0.304 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHhCCCCCCCeEEEEeCCe
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNISKMPTIQIWKDGE 163 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-~~~~~l~~~~~i~~~Pt~~~~~~G~ 163 (189)
.+.+++.. ..+++++|+|||+||++|+.+.|.|+++++++ +++.++.+|.+ ..+ .++++|+|.++||+++|++|
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~-~l~~~~~V~~~PT~~lf~~g- 82 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKP-SLLSRYGVVGFPTILLFNST- 82 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCH-HHHHhcCCeecCEEEEEcCC-
Confidence 44455433 57999999999999999999999999999999 46889999998 666 49999999999999999999
Q ss_pred EEEEEeCCCcchhhHHHHHHHH
Q 029703 164 MKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 164 ~~~~~~g~~~~~~~~~~l~~~i 185 (189)
.+.++.|..+. +.|.+||
T Consensus 83 ~~~~~~G~~~~----~~l~~f~ 100 (100)
T cd02999 83 PRVRYNGTRTL----DSLAAFY 100 (100)
T ss_pred ceeEecCCCCH----HHHHhhC
Confidence 78899999888 7787764
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=1e-21 Score=134.78 Aligned_cols=104 Identities=23% Similarity=0.535 Sum_probs=92.0
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+..++ .++|++.+. ..+++++|+||++||++|+.+.|.++++++.+.+++.++.+|++..+. ++++|+|.++||+
T Consensus 5 v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 79 (109)
T PRK09381 5 IIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL 79 (109)
T ss_pred ceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEE
Confidence 44454 468887653 568899999999999999999999999999998889999999999885 8999999999999
Q ss_pred EEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
++|++|+.+.++.|..+. +.|.++|++.|
T Consensus 80 ~~~~~G~~~~~~~G~~~~----~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSK----GQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCH----HHHHHHHHHhc
Confidence 999999999999999887 88888888764
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=4.4e-22 Score=136.49 Aligned_cols=99 Identities=31% Similarity=0.588 Sum_probs=85.3
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC------CCeEEEEEEccCChHHHHHhCCC
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI 150 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~------~~v~~~~vd~~~~~~~l~~~~~i 150 (189)
+..+ +.++|++.+ ..+++++|.|||+||++|+.+.|.|+++++.++ +.+.++.+|++.+++ ++++|+|
T Consensus 3 v~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v 76 (108)
T cd02996 3 IVSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRI 76 (108)
T ss_pred eEEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCC
Confidence 3444 477999988 678999999999999999999999999998762 258999999999985 9999999
Q ss_pred CCCCeEEEEeCCe-EEEEEeCCCcchhhHHHHHHHH
Q 029703 151 SKMPTIQIWKDGE-MKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 151 ~~~Pt~~~~~~G~-~~~~~~g~~~~~~~~~~l~~~i 185 (189)
+++||+++|++|+ ...++.|.++. +.|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~----~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSV----EALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCH----HHHHhhC
Confidence 9999999999998 45788898887 7777764
No 21
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.87 E-value=1.5e-21 Score=132.93 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=82.7
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~w--C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
+..+|++.+ ..+.+++|+||++| |++|+.+.|.|+++++++.+.+.|+++|++++++ ++.+|+|.++||+++|
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTli~f 90 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPALLFF 90 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEEEEE
Confidence 467999888 67899999999997 9999999999999999998889999999999995 9999999999999999
Q ss_pred eCCeEEEEEeCCCcc
Q 029703 160 KDGEMKSEVIGGHKA 174 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~ 174 (189)
++|+.+.++.|..+.
T Consensus 91 kdGk~v~~~~G~~~~ 105 (111)
T cd02965 91 RDGRYVGVLAGIRDW 105 (111)
T ss_pred ECCEEEEEEeCccCH
Confidence 999999999998887
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=2.5e-21 Score=131.11 Aligned_cols=98 Identities=27% Similarity=0.456 Sum_probs=84.2
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISKMPT 155 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~~Pt 155 (189)
+..++ .++|++.+ . ++ ++|+|||+||++|+.+.|.|+++++.++. ++.++.+|++.++. ++++|+|.++||
T Consensus 3 v~~l~-~~~f~~~~----~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt 74 (101)
T cd02994 3 VVELT-DSNWTLVL----E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT 74 (101)
T ss_pred eEEcC-hhhHHHHh----C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence 34444 77999877 3 33 89999999999999999999999998753 69999999999885 999999999999
Q ss_pred EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
++++++|+. .++.|..+. +.|.+||++
T Consensus 75 ~~~~~~g~~-~~~~G~~~~----~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDK----EDLISFIEE 101 (101)
T ss_pred EEEeCCCCE-EEecCCCCH----HHHHHHHhC
Confidence 999999984 789999888 888888864
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=2.2e-21 Score=131.27 Aligned_cols=94 Identities=26% Similarity=0.543 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
+.++|++.+ .++ +++|+||++||++|+.+.|.++++++++++ ++.++.+|++.+.. ++++|+|.++||+++
T Consensus 6 ~~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 6 TEDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYPTLLL 79 (102)
T ss_pred CHHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCCEEEE
Confidence 367899998 344 599999999999999999999999999865 79999999999885 999999999999999
Q ss_pred EeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 159 WKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 159 ~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
|++|+.+.++.|..+. +.|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~----~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDL----DSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCH----HHHHhhC
Confidence 9999998999999987 7777664
No 24
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=1.6e-21 Score=134.79 Aligned_cols=104 Identities=21% Similarity=0.425 Sum_probs=85.3
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+.++++ ++|.+.+..+ ..+++++|+||++||++|+.+.|.++++++++ +++.|++||++.. .++++|+|.++||+
T Consensus 6 v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~--~l~~~~~i~~~Pt~ 80 (113)
T cd02957 6 VREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA--FLVNYLDIKVLPTL 80 (113)
T ss_pred EEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh--HHHHhcCCCcCCEE
Confidence 455665 7999888431 12489999999999999999999999999999 5799999999988 49999999999999
Q ss_pred EEEeCCeEEEEEeCCCc---chhhHHHHHHHH
Q 029703 157 QIWKDGEMKSEVIGGHK---AWLVIEEVREMI 185 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i 185 (189)
++|++|+.+.++.|..+ .+...+.|+.++
T Consensus 81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999999998643 333445555544
No 25
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.86 E-value=1.1e-20 Score=127.17 Aligned_cols=99 Identities=26% Similarity=0.622 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.++|.+.+. ..+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++.... ++++|+|.++|++++|++|
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEEEeCC
Confidence 568888874 346799999999999999999999999999997789999999999885 9999999999999999999
Q ss_pred eEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 163 EMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 163 ~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+.+.++.|..+. +.|.++|++.+
T Consensus 79 ~~~~~~~g~~~~----~~l~~~l~~~~ 101 (101)
T TIGR01068 79 KEVDRSVGALPK----AALKQLINKNL 101 (101)
T ss_pred cEeeeecCCCCH----HHHHHHHHhhC
Confidence 999999999887 88999988764
No 26
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.86 E-value=7.6e-21 Score=127.61 Aligned_cols=96 Identities=18% Similarity=0.454 Sum_probs=84.3
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD 161 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 161 (189)
+.++|++.+..+ .+++++|+||++||++|+.+.|.|+++++++.+++.++++|++..++ ++++|+|.++||+++|++
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEEEEEEC
Confidence 357899988542 26999999999999999999999999999976789999999999885 999999999999999999
Q ss_pred CeEEEEEeCCCcchhhHHHHHHHH
Q 029703 162 GEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 162 G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
|+.+.++.|... ++|.++|
T Consensus 78 g~~~~~~~g~~~-----~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADP-----KELAKKV 96 (97)
T ss_pred CEEEEEEeCCCH-----HHHHHhh
Confidence 999999999765 5666655
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.86 E-value=4.9e-21 Score=131.22 Aligned_cols=96 Identities=21% Similarity=0.485 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC--ChHHHHHhCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt~~~~ 159 (189)
+.++|++.+. ..+++++|+||++||++|+.+.|.++++++.+.+.+.++.+|++. +. +++++|+|.++||+++|
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-PLCGKYGVQGFPTLKVF 81 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-HHHHHcCCCcCCEEEEE
Confidence 3678998885 467889999999999999999999999999997789999999998 66 49999999999999999
Q ss_pred eCCe-----EEEEEeCCCcchhhHHHHHHHH
Q 029703 160 KDGE-----MKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 160 ~~G~-----~~~~~~g~~~~~~~~~~l~~~i 185 (189)
++|+ ....+.|..+. +.|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~----~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSA----KAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCH----HHHHHHh
Confidence 8775 45688898888 8888887
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=8.2e-21 Score=136.31 Aligned_cols=98 Identities=18% Similarity=0.456 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEEEe-
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQIWK- 160 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~- 160 (189)
..+|++.+ ..++++||+||++||++|+.+.|.+.++++++.+++.|+.||++... ..++++|+|.++||+++|+
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 45677777 68999999999999999999999999999999777889999988653 2489999999999999995
Q ss_pred CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 161 DGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|+++.++.|.... +.|.++|+++
T Consensus 86 ~G~~v~~~~G~~~~----~~l~~~l~~l 109 (142)
T cd02950 86 EGNEEGQSIGLQPK----QVLAQNLDAL 109 (142)
T ss_pred CCCEEEEEeCCCCH----HHHHHHHHHH
Confidence 89999999999888 5555555543
No 29
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=1.3e-20 Score=126.81 Aligned_cols=91 Identities=26% Similarity=0.647 Sum_probs=83.2
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+..+++.+++++++ ..+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++.... ++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence 45677889999998 67899999999999999999999999999988 579999999998875 9999999999999
Q ss_pred EEEeCCeEEEEEeCCCc
Q 029703 157 QIWKDGEMKSEVIGGHK 173 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~ 173 (189)
++|++|+.+.++.|...
T Consensus 76 ~~~~~g~~~~~~~G~~~ 92 (98)
T PTZ00051 76 KVFKNGSVVDTLLGAND 92 (98)
T ss_pred EEEeCCeEEEEEeCCCH
Confidence 99999999999999754
No 30
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-21 Score=145.62 Aligned_cols=104 Identities=21% Similarity=0.467 Sum_probs=93.3
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 155 (189)
.+..+.+..+|+..+.. ...|.++|+|+|+||+||+++.|.+..++.+| ++..|++||+++... ++..+||.+.||
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCce
Confidence 36678889999999965 47789999999999999999999999999999 788999999999986 899999999999
Q ss_pred EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+++|+||..+.+++|+.. ..|++.+.++
T Consensus 78 Fiff~ng~kid~~qGAd~-----~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGADA-----SGLEEKVAKY 105 (288)
T ss_pred EEEEecCeEeeeecCCCH-----HHHHHHHHHH
Confidence 999999999999999876 4666666654
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=1.1e-20 Score=127.59 Aligned_cols=99 Identities=27% Similarity=0.537 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
+.++|++.+ .++++++|+||++||++|+.+.+.++++++.+++ ++.++.+|++.+.. ++++|+|.++|++++|
T Consensus 2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTIKFF 76 (102)
T ss_pred chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEEEEe
Confidence 367899888 6799999999999999999999999999999865 69999999999885 9999999999999999
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
++|+...++.|..+. ++|..||++++
T Consensus 77 ~~~~~~~~~~g~~~~----~~l~~~i~~~~ 102 (102)
T TIGR01126 77 PKGKKPVDYEGGRDL----EAIVEFVNEKS 102 (102)
T ss_pred cCCCcceeecCCCCH----HHHHHHHHhcC
Confidence 877667899999888 88999998764
No 32
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.85 E-value=1.7e-20 Score=138.96 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=94.2
Q ss_pred CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK 152 (189)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 152 (189)
....+..+++.++|.+.+..+ ..+.++||+||++||++|+.+.|.|.++++++ +.+.|++||++.. .++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~--~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT--GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch--hhHHhCCCCC
Confidence 345677788778999988532 23459999999999999999999999999999 6899999999986 4999999999
Q ss_pred CCeEEEEeCCeEEEEEeCCCc---chhhHHHHHHHHHhh
Q 029703 153 MPTIQIWKDGEMKSEVIGGHK---AWLVIEEVREMIKKF 188 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i~~~ 188 (189)
+||+++|++|+.+.++.|... .+...+.|+.+|.++
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999999999988653 356667888887653
No 33
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=1e-20 Score=144.74 Aligned_cols=106 Identities=20% Similarity=0.410 Sum_probs=90.8
Q ss_pred eeecCChhHHHHHHHHhh-cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe
Q 029703 77 LEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT 155 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~-~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt 155 (189)
+..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.|+++++++++.+.++.+|++.+++ ++++|+|+++||
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~PT 109 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYPT 109 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCCE
Confidence 4444 4779999885321 136899999999999999999999999999998889999999999885 999999999999
Q ss_pred EEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 156 IQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 156 ~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+++|++|+.+..+.|..+. +.|.+|+.+.
T Consensus 110 l~~f~~G~~v~~~~G~~s~----e~L~~fi~~~ 138 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRST----EKLAAFALGD 138 (224)
T ss_pred EEEEECCEEEEeeCCCCCH----HHHHHHHHHH
Confidence 9999999988888888887 7788887654
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=1.5e-20 Score=127.55 Aligned_cols=94 Identities=26% Similarity=0.512 Sum_probs=84.0
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccC--ChHHHHHhCCCCCCCeEEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~--~~~~l~~~~~i~~~Pt~~~ 158 (189)
..+|+..+ .++++++|+||++||++|+.+.|.+.++++.+. +.+.++.+|++. +. .++++|+|.++||+++
T Consensus 7 ~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 7 DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD-ALKEEYNVKGFPTFKY 81 (104)
T ss_pred hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH-HHHHhCCCccccEEEE
Confidence 56899888 567799999999999999999999999999885 568899999998 66 4999999999999999
Q ss_pred EeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 159 WKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 159 ~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
|++|+.+.++.|..+. +.|.+||
T Consensus 82 ~~~g~~~~~~~g~~~~----~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTA----EDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCH----HHHHhhC
Confidence 9999999999999887 7777764
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=2.8e-20 Score=134.40 Aligned_cols=92 Identities=18% Similarity=0.462 Sum_probs=80.2
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHHhCCCCC--
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNISK-- 152 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~~~~i~~-- 152 (189)
.+..++ .++|++.+.. ..+++++|+||++||++|+.+.|.++++++++++ ++.|++||++++++ ++++|+|.+
T Consensus 29 ~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~ 104 (152)
T cd02962 29 HIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSP 104 (152)
T ss_pred ccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecC
Confidence 344444 6789988743 3467999999999999999999999999999863 59999999999985 999999988
Q ss_pred ----CCeEEEEeCCeEEEEEeCC
Q 029703 153 ----MPTIQIWKDGEMKSEVIGG 171 (189)
Q Consensus 153 ----~Pt~~~~~~G~~~~~~~g~ 171 (189)
+||+++|++|+++.++.|.
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999984
No 36
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.85 E-value=2.1e-20 Score=127.27 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=74.9
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.+++++.+.. .+++++||.|+++||+||+.+.|.++++++++++.+.|++||+++.++ ++++|+|.+.||+++|++|
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEEEECC
Confidence 4678888865 369999999999999999999999999999995449999999999996 9999999999999999999
Q ss_pred eEEEEEeC
Q 029703 163 EMKSEVIG 170 (189)
Q Consensus 163 ~~~~~~~g 170 (189)
+.+..-.|
T Consensus 79 kh~~~d~g 86 (114)
T cd02986 79 QHMKVDYG 86 (114)
T ss_pred cEEEEecC
Confidence 87754333
No 37
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.84 E-value=3.1e-20 Score=125.87 Aligned_cols=96 Identities=23% Similarity=0.461 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD 161 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 161 (189)
+.++|++.+. ..+++++|+||++||++|+.+.|.|.++++++.+.+.++.+|++.+++ ++++|+|+++|++++|++
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEEEEECC
Confidence 4678988874 456679999999999999999999999999997889999999999885 999999999999999998
Q ss_pred C-eEEEEEeCCCcchhhHHHHHHHH
Q 029703 162 G-EMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 162 G-~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
| +....+.|..+. ++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~----~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTA----KAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCH----HHHHHHh
Confidence 8 556688898887 7888775
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.84 E-value=4.3e-20 Score=124.25 Aligned_cols=93 Identities=31% Similarity=0.534 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 86 ~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++..+. +.+++++|+||++||++|+.+.|.++++++++++++.++.+|++..++ ++++++|.++||+++|++|+.+
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeEE
Confidence 445554 578999999999999999999999999999997789999999999885 9999999999999999999999
Q ss_pred EEEeCCCcchhhHHHHHHHHH
Q 029703 166 SEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 166 ~~~~g~~~~~~~~~~l~~~i~ 186 (189)
.++.|..+. ++|.++|+
T Consensus 81 ~~~~g~~~~----~~~~~~l~ 97 (97)
T cd02949 81 KEISGVKMK----SEYREFIE 97 (97)
T ss_pred EEEeCCccH----HHHHHhhC
Confidence 999999988 77777763
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.84 E-value=1.7e-20 Score=127.65 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEE
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~ 157 (189)
+.|++.+ .++++++|+||++||++|+.+.+.+ .++++.+++++.++.+|++.. ...++++|+|.++||++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4677777 6889999999999999999999988 678888866899999999873 22589999999999999
Q ss_pred EEe--CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 158 IWK--DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 158 ~~~--~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+|+ +|+.+.++.|..+. ++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~----~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTA----DEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCH----HHHHHHhC
Confidence 997 79999999999998 77777663
No 40
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=7.7e-20 Score=124.51 Aligned_cols=95 Identities=20% Similarity=0.417 Sum_probs=81.4
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
.++|++.. ++++++|.||++||++|+.+.|.|+++++.++ ..+.++.+|++..+. ++++|+|.++||+++|
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEEEEE
Confidence 46777643 57899999999999999999999999999983 358999999998885 9999999999999999
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
++|. ..++.|..+. +.|.+|+++.
T Consensus 80 ~~~~-~~~~~G~~~~----~~l~~~~~~~ 103 (104)
T cd03000 80 KGDL-AYNYRGPRTK----DDIVEFANRV 103 (104)
T ss_pred cCCC-ceeecCCCCH----HHHHHHHHhh
Confidence 8774 5678898887 8888888764
No 41
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=9.1e-20 Score=125.23 Aligned_cols=99 Identities=14% Similarity=0.310 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHHH-hCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVK-RGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~~-~~~i~~~Pt~~~~ 159 (189)
+.++|+.++... .++++++|.||++||++|+.+.|.|.++++.+++ ++.++.||++.....++. .|+|+++||+++|
T Consensus 7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 366898887432 4679999999999999999999999999999975 499999999984334776 5999999999999
Q ss_pred eC-CeEEEEEeCC-CcchhhHHHHHHHH
Q 029703 160 KD-GEMKSEVIGG-HKAWLVIEEVREMI 185 (189)
Q Consensus 160 ~~-G~~~~~~~g~-~~~~~~~~~l~~~i 185 (189)
++ +.....|.|. ++. +.|..||
T Consensus 86 ~~~~~~~~~y~g~~~~~----~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSEQRDV----DSLLMFV 109 (109)
T ss_pred cCCCCCceeccCCCCCH----HHHHhhC
Confidence 75 4567789885 666 6777664
No 42
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=2.3e-19 Score=121.63 Aligned_cols=94 Identities=21% Similarity=0.470 Sum_probs=81.3
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--CeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.++|++.+. ..+++++|+||++||++|+.+.|.+.++++.+++ ++.++.+|++.+. ++..+++.++||+++|+
T Consensus 7 ~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 7 GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPTILFFP 81 (104)
T ss_pred hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCEEEEEc
Confidence 679988884 4568999999999999999999999999999854 5999999999863 78899999999999999
Q ss_pred CCe--EEEEEeCCCcchhhHHHHHHHH
Q 029703 161 DGE--MKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 161 ~G~--~~~~~~g~~~~~~~~~~l~~~i 185 (189)
+|+ ...++.|..+. +.|.+||
T Consensus 82 ~~~~~~~~~~~g~~~~----~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTL----EDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCH----HHHHhhC
Confidence 876 56789998887 7777664
No 43
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=3e-19 Score=121.18 Aligned_cols=95 Identities=26% Similarity=0.560 Sum_probs=81.9
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccC-ChHHHHHhCCCCCCCeEEEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~-~~~~l~~~~~i~~~Pt~~~~ 159 (189)
.++|++.+. ..+++++|.||++||++|+.+.|.+.++++.++ +++.++.+|++. ++. ++++|+|.++|++++|
T Consensus 7 ~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 7 DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFPTLKFF 82 (105)
T ss_pred hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcCEEEEE
Confidence 568888773 356699999999999999999999999999985 569999999999 775 9999999999999999
Q ss_pred eCC-eEEEEEeCCCcchhhHHHHHHHH
Q 029703 160 KDG-EMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 160 ~~G-~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
++| +....+.|..+. ++|.+||
T Consensus 83 ~~~~~~~~~~~g~~~~----~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDL----EDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCH----HHHHhhC
Confidence 855 667788888877 7777764
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.81 E-value=4.9e-19 Score=122.34 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=76.5
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE--EEeCCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS--EVIGGH 172 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~--~~~g~~ 172 (189)
..++.++|+||++||++|+.+.|.++++++.+ +.+.+..+|++..+. ++.+|+|.++||+++|++|.... ++.|..
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 56778999999999999999999999999887 789999999999885 99999999999999999765544 788988
Q ss_pred cchhhHHHHHHHHHhh
Q 029703 173 KAWLVIEEVREMIKKF 188 (189)
Q Consensus 173 ~~~~~~~~l~~~i~~~ 188 (189)
+. +++.++|+..
T Consensus 98 ~~----~el~~~i~~i 109 (113)
T cd02975 98 AG----YEFASLIEDI 109 (113)
T ss_pred ch----HHHHHHHHHH
Confidence 88 6677666653
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.81 E-value=4e-19 Score=119.07 Aligned_cols=95 Identities=29% Similarity=0.552 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
+.++|.+.+ .++++++|+||++||++|+.+.|.+.++++.+ .+.+.++.+|++.+.. ++++|+|.++||+++|
T Consensus 4 ~~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 4 TDDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTIKLF 78 (101)
T ss_pred cHHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEEEEE
Confidence 356899988 56779999999999999999999999999999 5789999999999775 9999999999999999
Q ss_pred eCC-eEEEEEeCCCcchhhHHHHHHHH
Q 029703 160 KDG-EMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 160 ~~G-~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
++| +...++.|..+. +.+.+|+
T Consensus 79 ~~~~~~~~~~~g~~~~----~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTL----ESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCH----HHHHhhC
Confidence 866 788899998877 6776653
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.80 E-value=1.7e-18 Score=121.07 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=78.1
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCC--
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGN-- 149 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~-- 149 (189)
+.++|.+.+ .+++.++|+|+++|||+|+.+.|.|.+++++ .++.++.+|++... .++.++|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 367899988 6889999999999999999999999999998 45778888888532 13567765
Q ss_pred --CCCCCeEEEEeCCeEEEEEeCCC-cchhhHHHHHHHHH
Q 029703 150 --ISKMPTIQIWKDGEMKSEVIGGH-KAWLVIEEVREMIK 186 (189)
Q Consensus 150 --i~~~Pt~~~~~~G~~~~~~~g~~-~~~~~~~~l~~~i~ 186 (189)
|.++||+++|++|+.+.+..|.. +. ++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~----~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTA----QELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCH----HHHHHHhh
Confidence 45699999999999999999953 45 78888764
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.79 E-value=1.4e-18 Score=122.03 Aligned_cols=96 Identities=17% Similarity=0.304 Sum_probs=77.5
Q ss_pred hHHHHHHHHhhcCC-CcEEEEEecCCChhhhhhhHHHH---HHHHHhCCCeEEEEEEccCC------------hHHHHHh
Q 029703 84 DHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV------------SKDLVKR 147 (189)
Q Consensus 84 ~~~~~~~~~a~~~~-k~~vv~f~a~wC~~C~~~~~~l~---~~~~~~~~~v~~~~vd~~~~------------~~~l~~~ 147 (189)
+.++++. .++ ++++|+||++||++|+.+.|.+. .+.+.+.+++.++.+|++.. ..+++.+
T Consensus 4 ~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4555555 678 99999999999999999999884 56666656788999998864 2358999
Q ss_pred CCCCCCCeEEEEe-C-CeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 148 GNISKMPTIQIWK-D-GEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 148 ~~i~~~Pt~~~~~-~-G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
|+|.++||+++|. + |+++.++.|..+. +.+.++|+.
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~----~~~~~~l~~ 117 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPP----DEFLAYLEY 117 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCH----HHHHHHHHH
Confidence 9999999999997 5 7999999999888 455555443
No 48
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-19 Score=148.30 Aligned_cols=103 Identities=25% Similarity=0.506 Sum_probs=92.5
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCC
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISK 152 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~ 152 (189)
.+.. .+.++|+..+ ..+..++|.||||||+||+++.|.+++.+..++ +.+.+++||++.+. ++|.+|+|++
T Consensus 26 ~Vl~-Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-~~~~~y~v~g 99 (493)
T KOG0190|consen 26 DVLV-LTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-DLASKYEVRG 99 (493)
T ss_pred ceEE-EecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-hhHhhhcCCC
Confidence 3443 4478999999 789999999999999999999999999999984 37899999999997 5999999999
Q ss_pred CCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 153 MPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+||+.+|+||+....|.|.+.. +.|..|+.+.
T Consensus 100 yPTlkiFrnG~~~~~Y~G~r~a----dgIv~wl~kq 131 (493)
T KOG0190|consen 100 YPTLKIFRNGRSAQDYNGPREA----DGIVKWLKKQ 131 (493)
T ss_pred CCeEEEEecCCcceeccCcccH----HHHHHHHHhc
Confidence 9999999999988899999999 9999998763
No 49
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=4.8e-19 Score=150.08 Aligned_cols=156 Identities=17% Similarity=0.292 Sum_probs=108.6
Q ss_pred cCCccccCCCccccceecCceEEEeCCC----cccc---ccccceeeeecCCCC-C--CC--ccceeecCChhHHHHHHH
Q 029703 24 FQQPWSSGSSSCLLLQKNSAFFWVDTAS----RSKS---ARRDVRVEALWPDLS-R--PT--SVELEPINDSDHLDQILL 91 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~~~~~g~~----~~~~---~~~~~~~~~~~~~~~-~--~~--~~~~~~i~~~~~~~~~~~ 91 (189)
.+..+++.++|++.+........+.+.. ..+. .-+.+..+...+... . |. ...+..+ +.++|++.+.
T Consensus 294 ~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~ 372 (477)
T PTZ00102 294 AKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVV-VGNTFEEIVF 372 (477)
T ss_pred HHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEe-cccchHHHHh
Confidence 5678899999999887643322232221 0111 001111111111111 1 11 1123333 3678988864
Q ss_pred HhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE-EEE
Q 029703 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK-SEV 168 (189)
Q Consensus 92 ~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~-~~~ 168 (189)
..+++++|+|||+||++|+.+.|.|+++++.++ +.+.++.+|++.+.. .+++|+++++||+++|++|..+ .++
T Consensus 373 ---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 373 ---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred ---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccCeEEEEECCCcceeEe
Confidence 578999999999999999999999999999885 358999999998875 7999999999999999866544 589
Q ss_pred eCCCcchhhHHHHHHHHHhh
Q 029703 169 IGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 169 ~g~~~~~~~~~~l~~~i~~~ 188 (189)
.|..+. +.|.+||+++
T Consensus 449 ~G~~~~----~~l~~~i~~~ 464 (477)
T PTZ00102 449 EGERTV----EGFKEFVNKH 464 (477)
T ss_pred cCcCCH----HHHHHHHHHc
Confidence 999988 8888888875
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.78 E-value=5.1e-18 Score=111.65 Aligned_cols=91 Identities=31% Similarity=0.675 Sum_probs=82.0
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
+|++.+ ..+++++|.||++||++|+.+.+.++++++. .+++.++.+|++.... ++++|++.++|+++++++|+.
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEEEEEECCEE
Confidence 566777 5669999999999999999999999999988 5889999999999875 999999999999999999999
Q ss_pred EEEEeCCCcchhhHHHHHHHH
Q 029703 165 KSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 165 ~~~~~g~~~~~~~~~~l~~~i 185 (189)
+..+.|..+. +.|.++|
T Consensus 76 ~~~~~g~~~~----~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPK----EELEEFL 92 (93)
T ss_pred EEEEecCCCH----HHHHHHh
Confidence 9999998887 7777776
No 51
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=3.2e-18 Score=128.41 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=87.3
Q ss_pred CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK 152 (189)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 152 (189)
....+..++ .++|...+..+ ..+.+|||+||++||++|+.+.|.|++++.+| +.+.|++||++. ...+|+|.+
T Consensus 80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~----~~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQ----CIPNYPDKN 152 (192)
T ss_pred CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHH----hHhhCCCCC
Confidence 344566665 56787766432 23469999999999999999999999999999 679999999974 368999999
Q ss_pred CCeEEEEeCCeEEEEEeCCCcc---hhhHHHHHHHHHh
Q 029703 153 MPTIQIWKDGEMKSEVIGGHKA---WLVIEEVREMIKK 187 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~~---~~~~~~l~~~i~~ 187 (189)
+||+++|++|+.+.++.|.... +...+.|+.+|.+
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999986432 4556778777754
No 52
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.77 E-value=2.6e-18 Score=131.52 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=101.1
Q ss_pred cccCCccccCCCccccceecCceE--EEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCc
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFF--WVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP 99 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~ 99 (189)
...++.|+|.++||+.+|++|... .+.|.........- +.... ...... ...+.+..+.+- ..+++
T Consensus 67 ~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~--i~~~~-~~~~~~-----~~L~~~~~~~l~----~~~~p 134 (215)
T TIGR02187 67 KEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAAL--IEDIV-RVSQGE-----PGLSEKTVELLQ----SLDEP 134 (215)
T ss_pred HHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHH--HHHHH-HhcCCC-----CCCCHHHHHHHH----hcCCC
Confidence 456688999999999999998763 45564333221110 11111 111110 111233333333 23444
Q ss_pred -EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703 100 -ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 100 -~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
.++.||++||++|+.+.+.+++++.+. +++.+..+|.+..+. ++++|+|.++||++++++|+. +.|..+.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~i~~~~~~---~~G~~~~---- 205 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKIVINKGVEE---FVGAYPE---- 205 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEEEEecCCEE---EECCCCH----
Confidence 555599999999999999999999885 789999999999885 999999999999999988863 8898887
Q ss_pred HHHHHHHHh
Q 029703 179 EEVREMIKK 187 (189)
Q Consensus 179 ~~l~~~i~~ 187 (189)
++|.++|.+
T Consensus 206 ~~l~~~l~~ 214 (215)
T TIGR02187 206 EQFLEYILS 214 (215)
T ss_pred HHHHHHHHh
Confidence 788888764
No 53
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.4e-19 Score=144.71 Aligned_cols=160 Identities=17% Similarity=0.291 Sum_probs=118.0
Q ss_pred ccccccCCccccCCCccccceecC-ceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCC
Q 029703 19 EGKQQFQQPWSSGSSSCLLLQKNS-AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELS 97 (189)
Q Consensus 19 ~~~~~~~~~~~i~g~Ptl~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~ 97 (189)
+..+..|+.|+|.|||||.+|+++ ....|.|.+..+..... ......+.........+..++ ..+|...+. ..+
T Consensus 88 ~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~---~~~ 162 (383)
T KOG0191|consen 88 DEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEF-LIKELEPSVKKLVEGEVFELT-KDNFDETVK---DSD 162 (383)
T ss_pred hhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHH-HHHhhccccccccCCceEEcc-ccchhhhhh---ccC
Confidence 445778999999999999999999 55778775544221111 111111111111111233333 567777664 578
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE-EEEEeCCCcc
Q 029703 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM-KSEVIGGHKA 174 (189)
Q Consensus 98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~-~~~~~g~~~~ 174 (189)
..++|.||+|||++|+.+.|.|++++..++ ..+.++.+|++.... ++.+++|.++||+++|++|.. ...+.|.++.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~ 241 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS 241 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceEEEecCCCcccccccccccH
Confidence 899999999999999999999999999884 679999999997664 999999999999999998777 7788888888
Q ss_pred hhhHHHHHHHHHhh
Q 029703 175 WLVIEEVREMIKKF 188 (189)
Q Consensus 175 ~~~~~~l~~~i~~~ 188 (189)
+.+..|+++.
T Consensus 242 ----~~i~~~v~~~ 251 (383)
T KOG0191|consen 242 ----DSIVSFVEKK 251 (383)
T ss_pred ----HHHHHHHHhh
Confidence 8888887653
No 54
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=2.3e-18 Score=118.43 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEec--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEEccC----ChHHHHHhCCCC
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVNK----VSKDLVKRGNIS 151 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a--~wC~---~C~~~~~~l~~~~~~~~~~v~~~~vd~~~----~~~~l~~~~~i~ 151 (189)
.+.++|++.+ .+++.+||.||| |||+ +|+.+.|.+.+.+. .+.+++||+++ ...+||++|+|+
T Consensus 6 L~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 6 LDTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 3478999999 789999999999 8888 77777777765443 48899999953 223599999999
Q ss_pred --CCCeEEEEeCCe--EEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703 152 --KMPTIQIWKDGE--MKSEVIGG-HKAWLVIEEVREMIKKF 188 (189)
Q Consensus 152 --~~Pt~~~~~~G~--~~~~~~g~-~~~~~~~~~l~~~i~~~ 188 (189)
++||+++|++|. ....|.|. ++. +.|.+||.++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~----~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTV----DALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccH----HHHHHHHHhc
Confidence 999999999885 44689996 888 8899998764
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.4e-17 Score=140.30 Aligned_cols=98 Identities=29% Similarity=0.562 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
+.++|++++ .++++++|+|||+||++|+.+.|.+.++++.+. +++.|+.||++.+.+ ++++|+|.++||+++
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTLKI 81 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEEEE
Confidence 477999999 678899999999999999999999999998874 349999999999985 999999999999999
Q ss_pred EeCCeE-EEEEeCCCcchhhHHHHHHHHHhh
Q 029703 159 WKDGEM-KSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 159 ~~~G~~-~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
|++|+. +.++.|..+. +.|.+|+.+.
T Consensus 82 ~~~g~~~~~~~~g~~~~----~~l~~~i~~~ 108 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDA----DGIVKYMKKQ 108 (462)
T ss_pred EeCCccceeEecCCCCH----HHHHHHHHHh
Confidence 999987 7899999988 7788887764
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.75 E-value=1.3e-17 Score=139.13 Aligned_cols=106 Identities=13% Similarity=0.266 Sum_probs=85.4
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCChHHHH-HhCCCCCCC
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLV-KRGNISKMP 154 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~~l~-~~~~i~~~P 154 (189)
+..+ +.++|++.+... ..++++||+|||+||++|+.|.|.|+++++++++ .+.|++||++.+...++ ++|+|.++|
T Consensus 353 Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 353 VVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred eEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 4444 467999998422 4789999999999999999999999999999965 48999999997643344 789999999
Q ss_pred eEEEEeCCe-EEEEEe-CCCcchhhHHHHHHHHHhh
Q 029703 155 TIQIWKDGE-MKSEVI-GGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 155 t~~~~~~G~-~~~~~~-g~~~~~~~~~~l~~~i~~~ 188 (189)
|+++|++|. ....|. |.++. +.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~----e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDV----DSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCH----HHHHHHHHhh
Confidence 999999875 334676 47887 8888888753
No 57
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.75 E-value=4.8e-18 Score=118.01 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC--CCeEEEEe-C
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQIWK-D 161 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~~~~-~ 161 (189)
++++.+..|+.+++++||+|||+||++|+.+.|.+.+..........|+.+|++..+......|++.+ +||+++|. +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 57777777768899999999999999999999999997665434456777777766534678899986 99999996 9
Q ss_pred CeEEEE---EeCCCcchhhHHHHHHHHH
Q 029703 162 GEMKSE---VIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 162 G~~~~~---~~g~~~~~~~~~~l~~~i~ 186 (189)
|+++.+ ..|..+...+.+.|...++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 999774 4555555444444544443
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.8e-17 Score=140.50 Aligned_cols=98 Identities=23% Similarity=0.480 Sum_probs=87.4
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
.+.++|+..+ .+++.++|+|||+||++|+++.|.+.++++.+. .++.++.+|++.+.. ++++|+|.++||++
T Consensus 37 l~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 37 LTDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGYPTIK 111 (477)
T ss_pred cchhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcccEEE
Confidence 3477999998 678899999999999999999999999988763 469999999999885 99999999999999
Q ss_pred EEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|++|+.+ ++.|.++. +.|.+|++++
T Consensus 112 ~~~~g~~~-~y~g~~~~----~~l~~~l~~~ 137 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTA----DGIVSWIKKL 137 (477)
T ss_pred EEECCceE-EecCCCCH----HHHHHHHHHh
Confidence 99998877 99999988 7888888765
No 59
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.74 E-value=2.3e-17 Score=114.31 Aligned_cols=84 Identities=20% Similarity=0.464 Sum_probs=71.6
Q ss_pred ecCChhHHHHHHHHhhcCCCcEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHH
Q 029703 79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLV 145 (189)
Q Consensus 79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a-------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~ 145 (189)
.+.+.++|.+.+.. .++++++|+||| +||++|+.+.|.++++++++++++.|++||++..+ .+++
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 35667889888853 247899999999 99999999999999999999668999999998642 2589
Q ss_pred HhCCCC-CCCeEEEEeCCeE
Q 029703 146 KRGNIS-KMPTIQIWKDGEM 164 (189)
Q Consensus 146 ~~~~i~-~~Pt~~~~~~G~~ 164 (189)
.+|+|. ++||+++|++|+.
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred hccCcccCCCEEEEEcCCce
Confidence 999998 9999999987754
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=2.2e-17 Score=124.46 Aligned_cols=89 Identities=12% Similarity=0.234 Sum_probs=76.5
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.+.++|.+.+. .+.+.++++|||+||++|+.+.|++.++++++ +++.|++||.+ |+|.++||+++|+
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEEE
Confidence 45788888882 22488999999999999999999999999999 78999999976 8999999999999
Q ss_pred CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 161 DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+|+.+.|+.|... .+|...+.+
T Consensus 71 ~g~~i~r~~G~~~-----~~~~~~~~~ 92 (204)
T PTZ00062 71 NSQLINSLEGCNT-----STLVSFIRG 92 (204)
T ss_pred CCEEEeeeeCCCH-----HHHHHHHHH
Confidence 9999999999875 355555543
No 61
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.74 E-value=2.9e-17 Score=113.63 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCC-hHHHHHhCCCCCCCeEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKV-SKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~ 157 (189)
+.++|++.+. ..+++++|+||++||++|+.+.|.|+++++.++ +.+.|+.+|++.. ..+++++|+|+++||++
T Consensus 7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 4779999985 345899999999999999999999999999874 3589999998643 22589999999999999
Q ss_pred EEeCCe
Q 029703 158 IWKDGE 163 (189)
Q Consensus 158 ~~~~G~ 163 (189)
+|++|.
T Consensus 84 lf~~~~ 89 (114)
T cd02992 84 YFPPFS 89 (114)
T ss_pred EECCCC
Confidence 998776
No 62
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=5.1e-17 Score=135.62 Aligned_cols=102 Identities=15% Similarity=0.319 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEcc-CChHHHHH-hCCCCCCCeEE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLVK-RGNISKMPTIQ 157 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~-~~~~~l~~-~~~i~~~Pt~~ 157 (189)
.+.++|++++... ..++++||+||+|||++|+.|.|.|+++++++.+ ++.|+++|++ .+. .++. +|+|.++||++
T Consensus 350 Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~-~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch-HHHHhhCCCceeeEEE
Confidence 3477999887433 5789999999999999999999999999999854 5999999999 555 4776 69999999999
Q ss_pred EEeCCe-EEEEEeC-CCcchhhHHHHHHHHHhh
Q 029703 158 IWKDGE-MKSEVIG-GHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 158 ~~~~G~-~~~~~~g-~~~~~~~~~~l~~~i~~~ 188 (189)
+|++|. ....|.| .++. +.|..||+.+
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~----~~L~~fv~~~ 456 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDV----DSLLSFVNSL 456 (457)
T ss_pred EEeCCCCCeeecCCCCcCH----HHHHHHHHHh
Confidence 998765 3346764 5777 8899998864
No 63
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.71 E-value=2e-16 Score=102.69 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=71.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHH
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIE 179 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~ 179 (189)
.+..||++||++|+.+.|.+++++++++..+.+..+|+++.++ ++++|++.++||+++ +|+. ++.|..+. +
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~~~--~g~~--~~~G~~~~----~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAIVI--NGDV--EFIGAPTK----E 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEEEE--CCEE--EEecCCCH----H
Confidence 4678999999999999999999999987779999999998885 899999999999986 7763 78898887 8
Q ss_pred HHHHHHHhhC
Q 029703 180 EVREMIKKFV 189 (189)
Q Consensus 180 ~l~~~i~~~l 189 (189)
+|.++|++.|
T Consensus 73 ~l~~~l~~~~ 82 (82)
T TIGR00411 73 ELVEAIKKRL 82 (82)
T ss_pred HHHHHHHhhC
Confidence 8888887754
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.71 E-value=9.6e-17 Score=108.72 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=77.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC--CCCeEEEEeC--CeEEEEEeCC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQIWKD--GEMKSEVIGG 171 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~~~--G~~~~~~~g~ 171 (189)
.++++++.|+++||++|+.+.|.++++++++++++.|+.+|+++.+. +++.|++. ++|+++++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 37899999999999999999999999999998899999999999885 99999999 9999999987 6554444444
Q ss_pred CcchhhHHHHHHHHHhhC
Q 029703 172 HKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 172 ~~~~~~~~~l~~~i~~~l 189 (189)
.+. +.|.+||++++
T Consensus 90 ~~~----~~l~~fi~~~~ 103 (103)
T cd02982 90 LTA----ESLEEFVEDFL 103 (103)
T ss_pred cCH----HHHHHHHHhhC
Confidence 355 89999998764
No 65
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=8.2e-17 Score=135.59 Aligned_cols=97 Identities=23% Similarity=0.463 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
+..+|++.+. ..+++++|+||++||++|+.+.|.++++++.+++ ++.|+++|++.+. +.. ++|.++||+++
T Consensus 352 ~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 352 VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKF 425 (462)
T ss_pred eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEE
Confidence 3678988874 5689999999999999999999999999999976 7999999999875 455 99999999999
Q ss_pred EeCCeE--EEEEeCCCcchhhHHHHHHHHHhh
Q 029703 159 WKDGEM--KSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 159 ~~~G~~--~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
|++|.. ..++.|..+. +.|.+||+++
T Consensus 426 ~~~~~~~~~~~~~g~~~~----~~l~~~l~~~ 453 (462)
T TIGR01130 426 VPAGKKSEPVPYDGDRTL----EDFSKFIAKH 453 (462)
T ss_pred EeCCCCcCceEecCcCCH----HHHHHHHHhc
Confidence 997765 3578898887 8899998865
No 66
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=7.2e-17 Score=125.37 Aligned_cols=97 Identities=21% Similarity=0.452 Sum_probs=79.6
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
+++++..... +.+..|+|+||||||+||+++.|+|.++.-+++ ..++++++|++..+. ++.+|+|++|||+.+|+
T Consensus 31 eDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 31 EDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEec
Confidence 3444444332 567899999999999999999999999988874 358999999999995 99999999999999998
Q ss_pred CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 161 DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 161 ~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+|-. ..|.|.+.. +.|.+|-.+
T Consensus 109 gd~a-~dYRG~R~K----d~iieFAhR 130 (468)
T KOG4277|consen 109 GDHA-IDYRGGREK----DAIIEFAHR 130 (468)
T ss_pred CCee-eecCCCccH----HHHHHHHHh
Confidence 7754 568888887 777776543
No 67
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.69 E-value=3.8e-16 Score=134.76 Aligned_cols=108 Identities=22% Similarity=0.413 Sum_probs=90.7
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh---HHHHHhCC
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN 149 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~ 149 (189)
...++.+.+++++.+..++.++|+++|+|||+||++|+.+.+.. .++.+++ +++.++++|+++++ .+++++|+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHcC
Confidence 46677889999999987767789999999999999999998875 6777777 56899999998652 35899999
Q ss_pred CCCCCeEEEEe-CCeEE--EEEeCCCcchhhHHHHHHHHHhh
Q 029703 150 ISKMPTIQIWK-DGEMK--SEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 150 i~~~Pt~~~~~-~G~~~--~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+.++||+++|+ +|+++ .++.|..+. +++.+++++.
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~----~~f~~~L~~~ 569 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDA----AAFAAHLRQL 569 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCH----HHHHHHHHHh
Confidence 99999999996 89884 688999888 7777777653
No 68
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.69 E-value=8.3e-17 Score=124.93 Aligned_cols=98 Identities=33% Similarity=0.625 Sum_probs=87.8
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh-----CCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-----DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-----~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
.++++..+ .....++|.|||+||+.++.+.|.+++.++.+ .+++.++.|||+.+.. ++.+|.|..|||+.
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLK 77 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceee
Confidence 45788888 67999999999999999999999999998877 2579999999999985 99999999999999
Q ss_pred EEeCCeEEE-EEeCCCcchhhHHHHHHHHHhhC
Q 029703 158 IWKDGEMKS-EVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 158 ~~~~G~~~~-~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+|+||..+. .|.|.++. +.|.+||++.+
T Consensus 78 vfrnG~~~~rEYRg~RsV----eaL~efi~kq~ 106 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSV----EALIEFIEKQL 106 (375)
T ss_pred eeeccchhhhhhccchhH----HHHHHHHHHHh
Confidence 999999887 89999999 88888887653
No 69
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-16 Score=133.37 Aligned_cols=96 Identities=25% Similarity=0.504 Sum_probs=82.1
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.++|++++. .++|.++|.||||||+||+++.|.|++|++.++ +++.++++|.+.+. .....+.++|||.+|+
T Consensus 373 gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd---~~~~~~~~fPTI~~~p 446 (493)
T KOG0190|consen 373 GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND---VPSLKVDGFPTILFFP 446 (493)
T ss_pred ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc---CccccccccceEEEec
Confidence 679999886 689999999999999999999999999999995 47999999999885 3556788899999998
Q ss_pred CCe--EEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 161 DGE--MKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 161 ~G~--~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
.|. ....|.|.++. ++|..||+++
T Consensus 447 ag~k~~pv~y~g~R~l----e~~~~fi~~~ 472 (493)
T KOG0190|consen 447 AGHKSNPVIYNGDRTL----EDLKKFIKKS 472 (493)
T ss_pred CCCCCCCcccCCCcch----HHHHhhhccC
Confidence 554 35678898888 8888888753
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.66 E-value=2.7e-16 Score=108.17 Aligned_cols=88 Identities=24% Similarity=0.495 Sum_probs=67.7
Q ss_pred hcCCCcEEEEEecCCChhhhhhhHHHHH---HHHHhCCCeEEEEEEccCCh-------------------HHHHHhCCCC
Q 029703 94 QELSQPILIDWMASWCRKCIYLKPKLEK---LAAEFDTKLKFYYVDVNKVS-------------------KDLVKRGNIS 151 (189)
Q Consensus 94 ~~~~k~~vv~f~a~wC~~C~~~~~~l~~---~~~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~i~ 151 (189)
+.++++++++||++||++|+.+.+.+.+ +...++.++.++.++++... .+++++|+|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 3678999999999999999999998885 44445557888888887642 2489999999
Q ss_pred CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 152 KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 152 ~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
++||++++. +|+.+.++.|..+. ++|.++|
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~----~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSP----EELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--H----HHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCH----HHHHhhC
Confidence 999999996 89999999999998 7776654
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=3.1e-15 Score=114.59 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=70.3
Q ss_pred CCCcEEEEEec---CCChhhhhhhHHHHHHHHHhCCCeE--EEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE-EEe
Q 029703 96 LSQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDTKLK--FYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS-EVI 169 (189)
Q Consensus 96 ~~k~~vv~f~a---~wC~~C~~~~~~l~~~~~~~~~~v~--~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~-~~~ 169 (189)
.+...++.|++ +||++|+.+.|.++++++.+ +++. ++.+|.++.++ ++++|+|.++||+++|++|+.+. ++.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTTIILEEGKDGGIRYT 95 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEEEEEeCCeeeEEEEe
Confidence 34455666877 99999999999999999998 4544 55666667775 99999999999999999999985 999
Q ss_pred CCCcchhhHHHHHHHHHhh
Q 029703 170 GGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 170 g~~~~~~~~~~l~~~i~~~ 188 (189)
|..+. +++..||+.+
T Consensus 96 G~~~~----~~l~~~i~~~ 110 (215)
T TIGR02187 96 GIPAG----YEFAALIEDI 110 (215)
T ss_pred ecCCH----HHHHHHHHHH
Confidence 99887 6666666543
No 72
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.61 E-value=1.2e-14 Score=101.62 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCChHHHHH--------hCCCCC
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVK--------RGNISK 152 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~~~~l~~--------~~~i~~ 152 (189)
+.++.+. +++|+++|+|+++||++|+.|.+. + .++++.+..++.++++|.++.++ +++ .|++.+
T Consensus 6 eal~~Ak----~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 6 EAFEKAR----REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHH----HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCC
Confidence 3444444 889999999999999999999863 3 35666666689999999988764 544 368999
Q ss_pred CCeEEEEe-CCeEEEEEeCC
Q 029703 153 MPTIQIWK-DGEMKSEVIGG 171 (189)
Q Consensus 153 ~Pt~~~~~-~G~~~~~~~g~ 171 (189)
+||++++. +|+++....+.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred CCEEEEECCCCCEEeeeeec
Confidence 99999996 89998766555
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.60 E-value=1.7e-14 Score=104.47 Aligned_cols=88 Identities=14% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-----------HHH-HHhC---CCCCCCeEEEEe
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------KDL-VKRG---NISKMPTIQIWK 160 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-----------~~l-~~~~---~i~~~Pt~~~~~ 160 (189)
.++..+|+||++||++|+++.|.+++++++++ +.++.|+.+... ... ...| ++.++||+++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 46677999999999999999999999999983 556666665421 123 3445 889999999996
Q ss_pred -CCeE-EEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 161 -DGEM-KSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 161 -~G~~-~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+|.. ..++.|..+. +++.+.|++.|
T Consensus 127 ~~G~~i~~~~~G~~s~----~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDE----AELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCH----HHHHHHHHHhC
Confidence 6664 5578999888 77777777654
No 74
>PHA02125 thioredoxin-like protein
Probab=99.59 E-value=1.7e-14 Score=92.43 Aligned_cols=62 Identities=23% Similarity=0.478 Sum_probs=54.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGH 172 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~ 172 (189)
+++||++||++|+.+.|.|+++. +.++.+|.+...+ ++++|+|.++||++ +|+.+.++.|..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~~---~g~~~~~~~G~~ 63 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTLV---NTSTLDRFTGVP 63 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeEE---CCEEEEEEeCCC
Confidence 78999999999999999997652 4688899988874 99999999999987 788888999963
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.59 E-value=1.5e-14 Score=92.90 Aligned_cols=73 Identities=21% Similarity=0.455 Sum_probs=59.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCC-CcchhhHH
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG-HKAWLVIE 179 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~-~~~~~~~~ 179 (189)
.|.||++||++|+.+.|.+++++++++.++.++.+| + .+ .+.+|++.++||+++ ||+.+ +.|. ... +
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~-~a~~~~v~~vPti~i--~G~~~--~~G~~~~~----~ 69 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MN-EILEAGVTATPGVAV--DGELV--IMGKIPSK----E 69 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HH-HHHHcCCCcCCEEEE--CCEEE--EEeccCCH----H
Confidence 378999999999999999999999997778887777 2 32 478899999999999 99877 6674 333 5
Q ss_pred HHHHHH
Q 029703 180 EVREMI 185 (189)
Q Consensus 180 ~l~~~i 185 (189)
+|.+++
T Consensus 70 ~l~~~l 75 (76)
T TIGR00412 70 EIKEIL 75 (76)
T ss_pred HHHHHh
Confidence 666665
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.58 E-value=1.7e-14 Score=103.43 Aligned_cols=73 Identities=21% Similarity=0.436 Sum_probs=61.0
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEEccCCh------------------------H
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVS------------------------K 142 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--------~v~~~~vd~~~~~------------------------~ 142 (189)
-.+|+++|+|||+||++|+.+.|.|.++++++++ ++.++.|+.+... .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3689999999999999999999999999887632 4888888877532 1
Q ss_pred HHHHhCCCCCCCeEEEEe-CCeEEEE
Q 029703 143 DLVKRGNISKMPTIQIWK-DGEMKSE 167 (189)
Q Consensus 143 ~l~~~~~i~~~Pt~~~~~-~G~~~~~ 167 (189)
.++++|++.++||++++. +|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 378889999999999996 9988754
No 77
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.58 E-value=3.2e-14 Score=106.55 Aligned_cols=90 Identities=17% Similarity=0.312 Sum_probs=71.0
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH----------------------HHHHhCCCCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----------------------DLVKRGNISK 152 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----------------------~l~~~~~i~~ 152 (189)
..+++++|+||++||++|+...|.+.++.++ ++.++.|+.++... .++..|+|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3689999999999999999999999988653 57788888654321 1456789999
Q ss_pred CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 153 MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 153 ~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+|+.+++. +|+++.++.|..+...+.+.++..+++
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 99888885 999999999999985555555555543
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.58 E-value=2.3e-14 Score=121.30 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=73.1
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEc----------------------------cCChHHHH
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV----------------------------NKVSKDLV 145 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~----------------------------~~~~~~l~ 145 (189)
.++|++||+|||+||++|+.+.|.|++++++++ +++.++.|.. +... .++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHH
Confidence 468999999999999999999999999999985 3577766543 2223 488
Q ss_pred HhCCCCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 146 KRGNISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 146 ~~~~i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+.|+|.++||++++ ++|+++.++.|..+. ++|.++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~----eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISE----AQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCH----HHHHHHHH
Confidence 99999999999877 599999999999998 77777776
No 79
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.57 E-value=6.2e-14 Score=96.92 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCCCCCeEEEE
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~~~ 159 (189)
.+|++++..|+.++|+++|+|+++||++|+.|... | .++.+.++.++.++.+|.+.. ...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46788888887899999999999999999998753 3 445555656788888888752 2358999999999999999
Q ss_pred e--CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 160 K--DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 160 ~--~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
. +|+.+.++.|..+++.+...|.+.+.+
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 5 699999999999997777777666553
No 80
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=119.22 Aligned_cols=88 Identities=28% Similarity=0.559 Sum_probs=79.1
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
..+++++|.||+|||++|+.+.|.|.++++.+++.+.++.||++.+.+ +|.+|+|+++||+.+|..|.....+.|..+.
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~ 123 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTLKVFRPGKKPIDYSGPRNA 123 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEEEEEcCCCceeeccCcccH
Confidence 689999999999999999999999999999998889999999999985 9999999999999999988666788888887
Q ss_pred hhhHHHHHHHHHh
Q 029703 175 WLVIEEVREMIKK 187 (189)
Q Consensus 175 ~~~~~~l~~~i~~ 187 (189)
+.+.+++.+
T Consensus 124 ----~~~~~~~~~ 132 (383)
T KOG0191|consen 124 ----ESLAEFLIK 132 (383)
T ss_pred ----HHHHHHHHH
Confidence 666666554
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.55 E-value=7.6e-14 Score=103.39 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=67.8
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------------------HHHHHhCCCCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNISK 152 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~i~~ 152 (189)
..+++++|+||++||++|+.+.|.++++.+. ++.++.|+.++.. ..+++.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3689999999999999999999999988763 4666666653211 13678899999
Q ss_pred CCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 153 MPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 153 ~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|+.+++ ++|+++.++.|..+. +++.++|+++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~----~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNN----EVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCH----HHHHHHHHHH
Confidence 9987777 599999999999888 5555555544
No 82
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.54 E-value=7.6e-14 Score=93.12 Aligned_cols=68 Identities=29% Similarity=0.701 Sum_probs=57.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhC--CCeEEEEEEccCCh------------------------HHHHHhCCC
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVS------------------------KDLVKRGNI 150 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~------------------------~~l~~~~~i 150 (189)
+|+++|+|||+||++|+...|.+.++.++++ +++.++.|+.+... ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999997 68999999988642 138899999
Q ss_pred CCCCeEEEEe-CCeE
Q 029703 151 SKMPTIQIWK-DGEM 164 (189)
Q Consensus 151 ~~~Pt~~~~~-~G~~ 164 (189)
.++|+++++. +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999999996 7863
No 83
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.52 E-value=3.4e-13 Score=94.58 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=80.7
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecC--CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMAS--WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~--wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
..+++..+ ...+..+|+|-++ -++.+....-+|++++++|. .++.+++||++.++. ++.+|||.++||+++|
T Consensus 24 ~~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTLl~F 98 (132)
T PRK11509 24 ESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVF 98 (132)
T ss_pred cccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEEEEE
Confidence 46888888 5666777767543 45777778889999999996 359999999999996 9999999999999999
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
++|+.+.++.|..+. +++.++|+++
T Consensus 99 kdGk~v~~i~G~~~k----~~l~~~I~~~ 123 (132)
T PRK11509 99 TGGNYRGVLNGIHPW----AELINLMRGL 123 (132)
T ss_pred ECCEEEEEEeCcCCH----HHHHHHHHHH
Confidence 999999999999999 6666666554
No 84
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.51 E-value=2e-13 Score=95.87 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=64.3
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-----------------------CChHHHHHhCCCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-----------------------KVSKDLVKRGNIS 151 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-----------------------~~~~~l~~~~~i~ 151 (189)
..+++++|+||++||++|+.+.|.++++.+++ ++.++.|+.+ ... .+++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~ 99 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVY 99 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCC
Confidence 45889999999999999999999999998876 3777777642 223 378889999
Q ss_pred CCCeEEEE-eCCeEEEEEeCCCcc
Q 029703 152 KMPTIQIW-KDGEMKSEVIGGHKA 174 (189)
Q Consensus 152 ~~Pt~~~~-~~G~~~~~~~g~~~~ 174 (189)
++|+.+++ ++|+++.++.|..+.
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCCh
Confidence 99977777 599999999998876
No 85
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.51 E-value=3.8e-13 Score=106.17 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=66.3
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCCCCCCCeEEEEeC-Ce
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNISKMPTIQIWKD-GE 163 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~~-G~ 163 (189)
-.++++||+||++||++|+.+.|.|++++++++ +.++.|+++... ..++++|+|.++||+++++. |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 458999999999999999999999999999984 666666665421 24899999999999999974 54
Q ss_pred E-EEEEeCCCcchhhHHHH
Q 029703 164 M-KSEVIGGHKAWLVIEEV 181 (189)
Q Consensus 164 ~-~~~~~g~~~~~~~~~~l 181 (189)
. .....|..+.+.+.+.+
T Consensus 242 ~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRI 260 (271)
T ss_pred EEEEEEeCCCCHHHHHHHH
Confidence 4 44566888884333333
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.51 E-value=1.3e-13 Score=97.72 Aligned_cols=73 Identities=22% Similarity=0.477 Sum_probs=60.3
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEccCCh------------------------HHHHHh
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVS------------------------KDLVKR 147 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~------------------------~~l~~~ 147 (189)
-.+|+++|+||++||++|+.+.|.++++++++++ ++.++.|+++... ..+++.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 4689999999999999999999999999998854 5778877776532 236778
Q ss_pred CCCCCCCeEEEEe-CCeEEEE
Q 029703 148 GNISKMPTIQIWK-DGEMKSE 167 (189)
Q Consensus 148 ~~i~~~Pt~~~~~-~G~~~~~ 167 (189)
|+|.++|++++++ +|+++.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred cCCCCCCEEEEECCCCCEEch
Confidence 9999999999996 8887643
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.49 E-value=1.8e-13 Score=96.73 Aligned_cols=72 Identities=22% Similarity=0.483 Sum_probs=60.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC---CCeEEEEEEccCCh-----------------------HHHHHhCC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVS-----------------------KDLVKRGN 149 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~vd~~~~~-----------------------~~l~~~~~ 149 (189)
.++++||+||++||++|+.+.|.+.++.+++. +++.++.++.+... ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 57899999999999999999999999988874 25777777776432 24788999
Q ss_pred CCCCCeEEEEe-CCeEEEE
Q 029703 150 ISKMPTIQIWK-DGEMKSE 167 (189)
Q Consensus 150 i~~~Pt~~~~~-~G~~~~~ 167 (189)
|.++|++++++ +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 9987654
No 88
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.49 E-value=4.4e-13 Score=98.92 Aligned_cols=88 Identities=17% Similarity=0.492 Sum_probs=75.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccCCh---------------------HHHHHhCCCCCC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------KDLVKRGNISKM 153 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~---------------------~~l~~~~~i~~~ 153 (189)
.+++++|+||++||++|+...+.+.++.+++.+ ++.++.++++... ..+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999999854 4888888876432 247899999999
Q ss_pred CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 154 PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 154 Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
|+++++. +|+++..+.|..+. +++.+++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~----~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTE----EQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCH----HHHHHHHHH
Confidence 9999996 99999999999988 777777764
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.47 E-value=4.6e-13 Score=83.66 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=54.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
-++.|+++||++|+.+.+.++++++.. +++.+..+|+++.++ ++++|++.++||+++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEEEE--CCEEE
Confidence 367899999999999999999998765 689999999998875 999999999999865 67643
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=4.7e-13 Score=122.62 Aligned_cols=89 Identities=16% Similarity=0.374 Sum_probs=72.0
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCC-eEEEEEEc---cC-----------------------ChHHHHHhC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDV---NK-----------------------VSKDLVKRG 148 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~-v~~~~vd~---~~-----------------------~~~~l~~~~ 148 (189)
.+|++||+|||+||++|+...|.|+++.++++++ +.++.|.. +. ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 6899999999999999999999999999999643 77777742 11 011377899
Q ss_pred CCCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 149 NISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 149 ~i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|.++|+++++ ++|+++.++.|.... +.|.++|++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~----~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHR----KDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCH----HHHHHHHHHH
Confidence 99999999999 599999999998887 5666655543
No 91
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.44 E-value=5.7e-13 Score=93.34 Aligned_cols=88 Identities=13% Similarity=0.228 Sum_probs=64.0
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.+|++.+..|+.++|+++|+|+++||++|+.|.... .++.+..+.++.++.++.+...... ...+ ..+||++|+.
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~-~~~g-~~vPtivFld 87 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNL-SPDG-QYVPRIMFVD 87 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCc-CccC-cccCeEEEEC
Confidence 478888888889999999999999999999998654 3344444345666667665321111 1234 6899999996
Q ss_pred -CCeEEEEEeCCCc
Q 029703 161 -DGEMKSEVIGGHK 173 (189)
Q Consensus 161 -~G~~~~~~~g~~~ 173 (189)
+|+++.++.|..+
T Consensus 88 ~~g~vi~~i~Gy~~ 101 (130)
T cd02960 88 PSLTVRADITGRYS 101 (130)
T ss_pred CCCCCccccccccc
Confidence 9999988888754
No 92
>smart00594 UAS UAS domain.
Probab=99.43 E-value=3.1e-12 Score=89.47 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQI 158 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~ 158 (189)
..+|++++..|++++|+++|+|+++||++|+.+.... .++.+.++.++.+..+|++... ..++..|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3478888877778899999999999999999987533 3344445456888888877543 25899999999999999
Q ss_pred Ee-CC-----eEEEEEeCCCcchhhHHHHHHHH
Q 029703 159 WK-DG-----EMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 159 ~~-~G-----~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
+. +| +.+.++.|..+. ++|..+|
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~----~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISP----EELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCH----HHHHHhh
Confidence 95 55 357789999888 6666554
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.42 E-value=2.2e-12 Score=89.92 Aligned_cols=77 Identities=22% Similarity=0.412 Sum_probs=60.3
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc---------------------cCChHHHHHhCCCCCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNISKM 153 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~---------------------~~~~~~l~~~~~i~~~ 153 (189)
..+++++|+||++||++|+.+.|.+.++++++ .+..+.+|- +... .++++|+|.++
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence 35699999999999999999999999998874 222222221 1222 48999999999
Q ss_pred CeEEEEeCCeEEEEEeCCCcc
Q 029703 154 PTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
|+++++.+|.+..++.|..+.
T Consensus 95 P~~~vid~~gi~~~~~g~~~~ 115 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSE 115 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCH
Confidence 999999744488899999888
No 94
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.41 E-value=2.7e-12 Score=94.85 Aligned_cols=83 Identities=13% Similarity=0.218 Sum_probs=64.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC------------hHHHHHhCCC--CCCCeEEEEe-CCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRGNI--SKMPTIQIWK-DGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~------------~~~l~~~~~i--~~~Pt~~~~~-~G~~~ 165 (189)
+|+||++||++|+++.|.+++++++++ +.++.|+.+.. ...+...|++ .++|+.++++ +|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999983 66666666532 1236778995 6999999995 99886
Q ss_pred -EEEeCCCcchhhHHHHHHHH
Q 029703 166 -SEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 166 -~~~~g~~~~~~~~~~l~~~i 185 (189)
..+.|..+.+.+.+.+...+
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999854444444444
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.41 E-value=2.4e-12 Score=87.59 Aligned_cols=74 Identities=28% Similarity=0.571 Sum_probs=66.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC-----------------------hHHHHHhCCCC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS 151 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~i~ 151 (189)
.+++++|+||++||++|+...+.+.++.++++ +++.++.|+++.. . .+.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCcC
Confidence 47899999999999999999999999999985 5799999999875 3 489999999
Q ss_pred CCCeEEEEe-CCeEEEEEeC
Q 029703 152 KMPTIQIWK-DGEMKSEVIG 170 (189)
Q Consensus 152 ~~Pt~~~~~-~G~~~~~~~g 170 (189)
++|+++++. +|+++.++.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 999999996 8999888766
No 96
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.41 E-value=2.1e-12 Score=88.83 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=55.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--------------------HHHHHhCCCCCCCe
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------------------KDLVKRGNISKMPT 155 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~Pt 155 (189)
++++++|+||++||++|+.+.|.++++.+++.+++.++.+. +... ..+.++|++..+|+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~ 98 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPY 98 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCe
Confidence 37899999999999999999999999988886667666552 2111 23677889999999
Q ss_pred EEEEe-CCeEEE
Q 029703 156 IQIWK-DGEMKS 166 (189)
Q Consensus 156 ~~~~~-~G~~~~ 166 (189)
.++++ +|+++.
T Consensus 99 ~~vid~~G~v~~ 110 (114)
T cd02967 99 AVLLDEAGVIAA 110 (114)
T ss_pred EEEECCCCeEEe
Confidence 99996 887754
No 97
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.40 E-value=3.3e-12 Score=84.36 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=62.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
.+..-+..|+++||++|....+.++++++.+ +++.+..+|.++.++ ++++|+|.++||+++ ||+.+. .|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~vi--dG~~~~--~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAIFL--NGELFG--FGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEEEE--CCEEEE--eCCCCH
Confidence 4566788899999999999999999999887 689999999999885 899999999999964 898765 475443
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.36 E-value=6.2e-12 Score=88.30 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=63.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccC-----Ch---------------------HHHHHhC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK-----VS---------------------KDLVKRG 148 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~-----~~---------------------~~l~~~~ 148 (189)
.+++++|+||++||++|+...|.|.++.++++ .++.++.|+.+. .. ..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 57999999999999999999999999999996 357888876521 11 1367889
Q ss_pred CCCCCCeEEEEe-CCeEEEEEeCC
Q 029703 149 NISKMPTIQIWK-DGEMKSEVIGG 171 (189)
Q Consensus 149 ~i~~~Pt~~~~~-~G~~~~~~~g~ 171 (189)
++.++|+++++. +|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999995 89999998885
No 99
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.36 E-value=2.1e-12 Score=84.01 Aligned_cols=75 Identities=20% Similarity=0.446 Sum_probs=58.1
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.++++.+..|++++|+++|+|+++||++|+.|...+ .++.+.+..++.++.+|.+...... .+...++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence 367778877778999999999999999999998766 4455545568999999998765422 22226699999985
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.35 E-value=1.6e-11 Score=88.16 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=67.0
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC--
Q 029703 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS-- 151 (189)
Q Consensus 96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~-- 151 (189)
.+|+++|.||++ ||++|+...|.+.++.++++ ..+.++.|..+..+ ..+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 689999999999 99999999999999998864 45888888776543 1388999998
Q ss_pred -------CCCeEEEEe-CCeEEEEEeCCCc
Q 029703 152 -------KMPTIQIWK-DGEMKSEVIGGHK 173 (189)
Q Consensus 152 -------~~Pt~~~~~-~G~~~~~~~g~~~ 173 (189)
++|+++++. +|+++.+..|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 999999885 9999999999877
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.34 E-value=1.6e-11 Score=91.26 Aligned_cols=90 Identities=8% Similarity=0.055 Sum_probs=68.1
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEE------EEEEccCCh---------------------------
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNKVS--------------------------- 141 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~------~~vd~~~~~--------------------------- 141 (189)
-.+|+.+|+|||+||++|+...|.+.++.++ ++.+ ..||.++..
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 4699999999999999999999999999664 2444 555555421
Q ss_pred -HHHHHhCCCCCCCeE-EEEe-CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 142 -KDLVKRGNISKMPTI-QIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 142 -~~l~~~~~i~~~Pt~-~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
..++..|++.++|+. ++++ +|+++.++.|..+.+.+.+ +...|++.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~~l 182 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVNGL 182 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHHHH
Confidence 126778999999877 6774 9999999999988754433 55555554
No 102
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.32 E-value=8.3e-12 Score=105.44 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=81.9
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHH---HHHHHhCCCeEEEEEEccCChH---HHHHhCCCC
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS 151 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~---~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~ 151 (189)
..+.+...+++.+.+ ..+|||+|+|||+||-.||.+++..- +...+. .++...++|.+.++. ++.++|++-
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 556667789999854 34469999999999999999987653 333344 679999999998743 488999999
Q ss_pred CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 152 KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 152 ~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
++|++++|. +|++.....|..++ +.+.+++++
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a----~~~~~~l~~ 566 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTA----DAFLEHLER 566 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecH----HHHHHHHHH
Confidence 999999997 88887789999999 666666654
No 103
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.4e-12 Score=109.20 Aligned_cols=103 Identities=18% Similarity=0.353 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh---CCCeEEEEEEccCCh-HHHHHhCCCCCCCe
Q 029703 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVS-KDLVKRGNISKMPT 155 (189)
Q Consensus 80 i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt 155 (189)
..+.++|+..+. .+.+..+|.||++|||+|+.+.|.++++++.+ .+-+.++.|||.+.. ..+|++|+|+++|+
T Consensus 43 ~Ld~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 43 ELDVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPT 119 (606)
T ss_pred EeehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCce
Confidence 345789999995 33469999999999999999999999999987 346889999997653 35999999999999
Q ss_pred EEEEeCC----eEEEEEeCCCcchhhHHHHHHHH
Q 029703 156 IQIWKDG----EMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 156 ~~~~~~G----~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
+.+|..+ ..=..+.|.....+..+.+...|
T Consensus 120 lryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 120 LRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred eeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999522 11123455555544445554444
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.26 E-value=5.2e-11 Score=91.97 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHH-HhCC--------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLV-KRGN-------------- 149 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~-~~~~-------------- 149 (189)
.++++||+||++||++|+...|.|.++.+++++ .+.++.|+++. ..+ ..+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 579999999999999999999999999999964 58898888742 111 122 2221
Q ss_pred --------------------CCCCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 150 --------------------ISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 150 --------------------i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
|...|+.+++. +|+++.++.|..+. ++|+..|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~----~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSP----FQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCH----HHHHHHHHHH
Confidence 12358888885 99999999999988 5555555554
No 105
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.26 E-value=1.8e-11 Score=87.60 Aligned_cols=71 Identities=20% Similarity=0.487 Sum_probs=61.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCC---eEEEEEEccCCh------------------------HHHHHhC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVS------------------------KDLVKRG 148 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~------------------------~~l~~~~ 148 (189)
.+|.+.++|.|.||+||+.+.|++.++.++.+.+ +.++.|+.|... +++...|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 6799999999999999999999999999998655 888888877643 2378899
Q ss_pred CCCCCCeEEEEe-CCeEEE
Q 029703 149 NISKMPTIQIWK-DGEMKS 166 (189)
Q Consensus 149 ~i~~~Pt~~~~~-~G~~~~ 166 (189)
+|.++|++++++ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999996 897764
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.25 E-value=7.2e-11 Score=88.66 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=54.4
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC-------------------ChHHHHHhCCCCCCCe
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-------------------VSKDLVKRGNISKMPT 155 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~-------------------~~~~l~~~~~i~~~Pt 155 (189)
..+++++|+||++||++|+.+.|.+.++.++..-++ +.+..+. ...++++.|++..+|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~v--v~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDV--VMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcE--EEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 367899999999999999999999999987753334 4333211 0124788999999999
Q ss_pred EEEEe-CCeEEEE
Q 029703 156 IQIWK-DGEMKSE 167 (189)
Q Consensus 156 ~~~~~-~G~~~~~ 167 (189)
.+++. +|++..+
T Consensus 150 ~~lID~~G~I~~~ 162 (189)
T TIGR02661 150 GVLLDQDGKIRAK 162 (189)
T ss_pred EEEECCCCeEEEc
Confidence 88885 8988764
No 107
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.23 E-value=6.2e-11 Score=93.03 Aligned_cols=111 Identities=15% Similarity=0.288 Sum_probs=84.3
Q ss_pred ccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCC
Q 029703 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKM 153 (189)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~ 153 (189)
-..+.++.+.+.|-+.+..+ ..+..|||.||.+.++.|..|...|..||.+| +.++|++|.....+ +..+|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence 34577788888888888322 23457999999999999999999999999999 89999999998765 5789999999
Q ss_pred CeEEEEeCCeEEEEEeCCC---cchhhHHHHHHHHHhh
Q 029703 154 PTIQIWKDGEMKSEVIGGH---KAWLVIEEVREMIKKF 188 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~---~~~~~~~~l~~~i~~~ 188 (189)
||+++|++|..+..+.|.. ..++..+.|+.+|.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999999998864 3456777888888764
No 108
>PLN02412 probable glutathione peroxidase
Probab=99.20 E-value=1.2e-10 Score=85.87 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChHHH----HHhCC--------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSKDL----VKRGN-------------- 149 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~~l----~~~~~-------------- 149 (189)
.+|++||+||++||++|+...|.|.++.+++++ ++.++.|+++. ...++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 579999999999999999999999999999964 58888888642 11111 12211
Q ss_pred --------------------CCCCCeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 150 --------------------ISKMPTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 150 --------------------i~~~Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
|...|+.+++ ++|+++.++.|..+...+...|...|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3446888888 499999999999998444444444443
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.19 E-value=2.4e-10 Score=86.51 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHHHhCCC--------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLVKRGNI-------------- 150 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~~~~~i-------------- 150 (189)
.++++||+|||+||++|+...|.|.++.+++++ .+.++.|+++. ..+ ..++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 578999999999999999999999999999954 58899998642 111 23444432
Q ss_pred ----------------------CCCC---eEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 151 ----------------------SKMP---TIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 151 ----------------------~~~P---t~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
..+| +.+++ ++|+++.++.|..+...+.+.|...++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1222 45566 599999999998887444455554443
No 110
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.18 E-value=7.6e-10 Score=76.58 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEecC----CChhhhhhh--HHHHHHHHHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEE
Q 029703 85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQ 157 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~----wC~~C~~~~--~~l~~~~~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~ 157 (189)
.|++++..|+++.|.++|++|++ ||..|+... |.+.++.+ .++.+...|++... ..++..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 57788877878999999999999 899997654 55555544 56888889987653 2589999999999999
Q ss_pred EE---e-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 158 IW---K-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 158 ~~---~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
++ . +.+++.++.|..+++.+...|..++++
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 99 2 345688999999997777777777765
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.12 E-value=3.7e-10 Score=76.43 Aligned_cols=73 Identities=30% Similarity=0.660 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-CChHHHHHhCC--CCCCCeEEEEeCCeEEEEEeC
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGN--ISKMPTIQIWKDGEMKSEVIG 170 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-~~~~~l~~~~~--i~~~Pt~~~~~~G~~~~~~~g 170 (189)
++++++.||++||++|+.+.|.+.++++++...+.+..+|.. .... +...|+ +..+|+++++.+|+.+....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 789999999999999999999999999999657999999997 5554 899999 999999999888877655655
No 112
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.12 E-value=8.5e-10 Score=80.01 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=66.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC-------ChH---HHHHh-CC--------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK-------VSK---DLVKR-GN-------------- 149 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~~---~l~~~-~~-------------- 149 (189)
.+|++||.||++||++|+...|.+.++.+++++ ++.++.|+++. ..+ ..+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578999999999999999999999999999954 68898888621 111 12221 21
Q ss_pred ---------C---CCCCe----EEEE-eCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 150 ---------I---SKMPT----IQIW-KDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 150 ---------i---~~~Pt----~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+ .++|+ .+++ ++|+++.++.|..+. +.|...|++.|
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~----~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV----EEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH----HHHHHHHHHhC
Confidence 1 24785 5666 599999999999988 66666666543
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.11 E-value=1.2e-09 Score=80.70 Aligned_cols=72 Identities=14% Similarity=0.365 Sum_probs=60.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC-------h---------------------HHHHH
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-------S---------------------KDLVK 146 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~-------~---------------------~~l~~ 146 (189)
.++++||+||++||+.|....+.+.++.+++. .++.++.|..+.. . ..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67999999999999999999999999999985 4789999887642 1 12678
Q ss_pred hCCCCCCCeEEEEe-CCeEEEE
Q 029703 147 RGNISKMPTIQIWK-DGEMKSE 167 (189)
Q Consensus 147 ~~~i~~~Pt~~~~~-~G~~~~~ 167 (189)
.|++...|+++++. +|+++.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEe
Confidence 89999999999996 8988755
No 114
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-10 Score=86.54 Aligned_cols=91 Identities=24% Similarity=0.452 Sum_probs=76.0
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCC----
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS---- 151 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~---- 151 (189)
+...++.+.++..+.. +..+.|+|.|++.|.+.|+.+.|.+.++..+|. +..+|++||+...++ .+.+|+|.
T Consensus 126 ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s~~ 202 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLSPG 202 (265)
T ss_pred eeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccCcc
Confidence 3344556666666643 556799999999999999999999999999995 579999999999996 89999875
Q ss_pred --CCCeEEEEeCCeEEEEEeC
Q 029703 152 --KMPTIQIWKDGEMKSEVIG 170 (189)
Q Consensus 152 --~~Pt~~~~~~G~~~~~~~g 170 (189)
..||+++|++|+++.|..-
T Consensus 203 srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred cccCCeEEEEccchhhhcCcc
Confidence 7999999999998876543
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.07 E-value=1.1e-09 Score=79.44 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=59.1
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccC-------ChH---HHHHh-CC--------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK-------VSK---DLVKR-GN-------------- 149 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~-------~~~---~l~~~-~~-------------- 149 (189)
.+|+++|+||++||+ |+...|.|+++.++++ .++.++.|+++. ..+ ..+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 579999999999999 9999999999999995 468888887642 111 12322 22
Q ss_pred ---------CCCCC-----------eEEEE-eCCeEEEEEeCCCcc
Q 029703 150 ---------ISKMP-----------TIQIW-KDGEMKSEVIGGHKA 174 (189)
Q Consensus 150 ---------i~~~P-----------t~~~~-~~G~~~~~~~g~~~~ 174 (189)
+.++| |.+++ ++|+++.++.|..+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~ 145 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDP 145 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCH
Confidence 23466 56777 599999999999887
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.02 E-value=2.6e-09 Score=67.18 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=53.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhh
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLV 177 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~ 177 (189)
+..|+++||++|+.+.+.|.+ .++.+..+|++..+. ++.+.+++.++|++++. |+. +.|. +.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~--- 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DP--- 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CH---
Confidence 567999999999999887764 357888899987653 35677999999999874 654 5664 44
Q ss_pred HHHHHHHHH
Q 029703 178 IEEVREMIK 186 (189)
Q Consensus 178 ~~~l~~~i~ 186 (189)
+.|.++|+
T Consensus 67 -~~i~~~i~ 74 (74)
T TIGR02196 67 -EKLDQLLE 74 (74)
T ss_pred -HHHHHHhC
Confidence 77877764
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.00 E-value=4.9e-09 Score=74.51 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCCC
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISKM 153 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~ 153 (189)
.+++++|+|| +.||+.|....+.+.++.+++. .++.++.|..+... ..+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 6899999999999999998884 46788877765422 137888999988
Q ss_pred ---------CeEEEEe-CCeEEEEEeCCCcc
Q 029703 154 ---------PTIQIWK-DGEMKSEVIGGHKA 174 (189)
Q Consensus 154 ---------Pt~~~~~-~G~~~~~~~g~~~~ 174 (189)
|+.+++. +|+++..+.|....
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~ 132 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPK 132 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence 8999996 89999999999876
No 118
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.99 E-value=5e-09 Score=77.73 Aligned_cols=144 Identities=17% Similarity=0.312 Sum_probs=103.2
Q ss_pred cCCccccCCCccccceec--CceEEEeCC-CccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCc-
Q 029703 24 FQQPWSSGSSSCLLLQKN--SAFFWVDTA-SRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP- 99 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~--~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~- 99 (189)
.|..+++.. |+|.++++ +....|.|. ...+. +........-|.. ..++ .+++..+. ..+++
T Consensus 33 ~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~------l~~fI~~~~~P~v---~~~t-~~n~~~~~----~~~~~~ 97 (184)
T PF13848_consen 33 LAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEE------LKKFIKKNSFPLV---PELT-PENFEKLF----SSPKPP 97 (184)
T ss_dssp HHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHH------HHHHHHHHSSTSC---EEES-TTHHHHHH----STSSEE
T ss_pred HHHHhCCCC-CcEEEeccCCCCceecccccCCHHH------HHHHHHHhccccc---cccc-hhhHHHHh----cCCCce
Confidence 345688888 99999998 345788776 22222 2222222233433 2233 66899988 66665
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC--CCCeEEEEe--CCeEEEEEeCCCcch
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQIWK--DGEMKSEVIGGHKAW 175 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~~--~G~~~~~~~g~~~~~ 175 (189)
+++.|..........+...+..+++++++++.|+.+|++..++ +++.+++. .+|+++++. +++......|..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~- 175 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITP- 175 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCH-
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCH-
Confidence 7777877777788888999999999998899999999998775 89999998 999999997 44433333566666
Q ss_pred hhHHHHHHHHHh
Q 029703 176 LVIEEVREMIKK 187 (189)
Q Consensus 176 ~~~~~l~~~i~~ 187 (189)
+.|.+|+++
T Consensus 176 ---~~i~~Fl~d 184 (184)
T PF13848_consen 176 ---ESIEKFLND 184 (184)
T ss_dssp ---HHHHHHHHH
T ss_pred ---HHHHHHhcC
Confidence 999999874
No 119
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.99 E-value=1.8e-09 Score=79.33 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=85.6
Q ss_pred CccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCC
Q 029703 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISK 152 (189)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~ 152 (189)
...++..+.+..+|=+.. ..+.-||+.||-+.-..|+.|...|+.+++.+ -...|++||+...| -++.+++|..
T Consensus 64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~P-Flv~kL~IkV 137 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAP-FLVTKLNIKV 137 (211)
T ss_pred CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCc-eeeeeeeeeE
Confidence 345677888888887777 57888999999999999999999999999998 67899999999999 5999999999
Q ss_pred CCeEEEEeCCeEEEEEeCCCc
Q 029703 153 MPTIQIWKDGEMKSEVIGGHK 173 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~ 173 (189)
+|++++|++|..+.++.|+..
T Consensus 138 LP~v~l~k~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGFTD 158 (211)
T ss_pred eeeEEEEEcCEEEEEEeeHhh
Confidence 999999999999999999754
No 120
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.5e-09 Score=73.58 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=67.4
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEccCCh---------------HHHHHhCCCCCCCeE
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---------------KDLVKRGNISKMPTI 156 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~---------------~~l~~~~~i~~~Pt~ 156 (189)
.+++..+++|.++.|..|.++...+ .++.+.+.+++.++++++.... .+|++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 6789999999999999999987655 4455556677888888876532 359999999999999
Q ss_pred EEEe-CCeEEEEEeCCCcc
Q 029703 157 QIWK-DGEMKSEVIGGHKA 174 (189)
Q Consensus 157 ~~~~-~G~~~~~~~g~~~~ 174 (189)
++|+ +|+.+..+.|..++
T Consensus 120 vFfdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 120 VFFDKTGKTILELPGYMPP 138 (182)
T ss_pred EEEcCCCCEEEecCCCCCH
Confidence 9996 89999999999988
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.97 E-value=5.6e-09 Score=78.01 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=60.2
Q ss_pred CCCcE-EEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC----C---hHH----HHHh---------------
Q 029703 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK----V---SKD----LVKR--------------- 147 (189)
Q Consensus 96 ~~k~~-vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~----~---~~~----l~~~--------------- 147 (189)
.+|++ ++.+||+||++|+...|.++++.+++++ ++.++.|+++. . ..+ +.++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46654 4566999999999999999999999954 58888887642 0 000 0111
Q ss_pred ---------------------CCCCCCCe---EEEE-eCCeEEEEEeCCCcchhhHHHHHH
Q 029703 148 ---------------------GNISKMPT---IQIW-KDGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 148 ---------------------~~i~~~Pt---~~~~-~~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
+++.++|+ .+++ ++|+++.++.|..+...+.+.|.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ 179 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEK 179 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence 13457794 3555 599999999998887433333333
No 122
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.92 E-value=2.1e-08 Score=74.22 Aligned_cols=92 Identities=9% Similarity=0.091 Sum_probs=67.8
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK 146 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 146 (189)
.++++||+|| +.||++|....+.|.++++++. .++.++.|..+... ..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 8999999999999999999984 45777777654321 13677
Q ss_pred hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.|++. ..|+.++++ +|+++.++.+........+++.+.|++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 88886 578999996 999999887654432233555555543
No 123
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.92 E-value=4.7e-09 Score=76.21 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=53.0
Q ss_pred HHHHHhhcCCCcEEEEEecCCChhhhhhhH-HH--HHHHHHhCCCeEEEEEEccCChHHHHHhC--------CCCCCCeE
Q 029703 88 QILLRAQELSQPILIDWMASWCRKCIYLKP-KL--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NISKMPTI 156 (189)
Q Consensus 88 ~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~-~l--~~~~~~~~~~v~~~~vd~~~~~~~l~~~~--------~i~~~Pt~ 156 (189)
+.+..|++++|+++|.++.+||+.|+.|.. .+ .++++.++.++.-+++|.++.++ +...| +..++|+.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCce
Confidence 344444488999999999999999999874 22 44555565668889999999885 77777 78999999
Q ss_pred EEEe-CCeEEEEE
Q 029703 157 QIWK-DGEMKSEV 168 (189)
Q Consensus 157 ~~~~-~G~~~~~~ 168 (189)
+|+. +|+++...
T Consensus 107 vfltPdg~p~~~~ 119 (163)
T PF03190_consen 107 VFLTPDGKPFFGG 119 (163)
T ss_dssp EEE-TTS-EEEEE
T ss_pred EEECCCCCeeeee
Confidence 9996 99987643
No 124
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.89 E-value=1.1e-08 Score=61.45 Aligned_cols=61 Identities=33% Similarity=0.572 Sum_probs=51.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHH--HhCCCCCCCeEEEEeCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV--KRGNISKMPTIQIWKDG 162 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~--~~~~i~~~Pt~~~~~~G 162 (189)
++.||++||++|+.+.+.+.++ +....++.+..++++....... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445789999999998875222 48999999999999866
No 125
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.89 E-value=3.6e-10 Score=85.29 Aligned_cols=94 Identities=29% Similarity=0.435 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~ 159 (189)
.+.+++..++ ..-+++.|+||||+.|+.+.|.|+.++.-- .-.+.+++||++.++. |.-+|-+...||+.-.
T Consensus 29 ~~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 29 IDEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTIYHV 101 (248)
T ss_pred ecccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceEEEe
Confidence 3477888888 567999999999999999999999987753 2368999999999997 9999999999999998
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
++|. ..||.|.++. ..+..|+.
T Consensus 102 kDGe-FrrysgaRdk----~dfisf~~ 123 (248)
T KOG0913|consen 102 KDGE-FRRYSGARDK----NDFISFEE 123 (248)
T ss_pred eccc-cccccCcccc----hhHHHHHH
Confidence 9995 5899999998 55555553
No 126
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.89 E-value=8.1e-09 Score=71.36 Aligned_cols=81 Identities=20% Similarity=0.520 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEec-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHHH--
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLVK-- 146 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a-------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~~-- 146 (189)
+-++|.+.+.....++++++|+|++ +|||.|....|.+++.......+..++.+.+...+ .....
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 4567777775433567899999986 59999999999999988887668888888775422 12444
Q ss_pred hCCCCCCCeEEEEeCC
Q 029703 147 RGNISKMPTIQIWKDG 162 (189)
Q Consensus 147 ~~~i~~~Pt~~~~~~G 162 (189)
+++++++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 6999999999999765
No 127
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.88 E-value=3.8e-08 Score=62.93 Aligned_cols=73 Identities=21% Similarity=0.461 Sum_probs=55.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeC-CCcchhhHHH
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIG-GHKAWLVIEE 180 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g-~~~~~~~~~~ 180 (189)
|.+++++|+.|..+...+++++..+ + +.+-.+|....+ ++ .+|||.++|++++ ||+. ++.| ..+. ++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~-~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~----~e 70 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFE-EI-EKYGVMSVPALVI--NGKV--VFVGRVPSK----EE 70 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHH-HH-HHTT-SSSSEEEE--TTEE--EEESS--HH----HH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHH-HH-HHcCCCCCCEEEE--CCEE--EEEecCCCH----HH
Confidence 3446888999999999999999998 3 777777775555 35 9999999999955 8975 5788 5666 78
Q ss_pred HHHHHH
Q 029703 181 VREMIK 186 (189)
Q Consensus 181 l~~~i~ 186 (189)
|.++|+
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888774
No 128
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.85 E-value=2.3e-08 Score=70.41 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=52.4
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh---CCCCCCCeEEEEe-CCeEEEEEeC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNISKMPTIQIWK-DGEMKSEVIG 170 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~---~~i~~~Pt~~~~~-~G~~~~~~~g 170 (189)
..++.-++.|..+|||.|+..-|.+.++++.. +++.+-.+..+.+.+ +..+ .|..++|+++++. +|++++++..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 34566788899999999999999999999986 677777777777664 5554 4688999999995 7899888865
Q ss_pred CCcchhhHHHHHHHHHh
Q 029703 171 GHKAWLVIEEVREMIKK 187 (189)
Q Consensus 171 ~~~~~~~~~~l~~~i~~ 187 (189)
.. +.+++++++
T Consensus 117 rP------~~~~~~~~~ 127 (129)
T PF14595_consen 117 RP------KEVQELVDE 127 (129)
T ss_dssp S-------HHHH-----
T ss_pred CC------HHHhhcccc
Confidence 43 456665544
No 129
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.85 E-value=3.2e-08 Score=68.72 Aligned_cols=71 Identities=18% Similarity=0.473 Sum_probs=60.2
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC--
Q 029703 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS-- 151 (189)
Q Consensus 96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~-- 151 (189)
.+++++|.||+. ||++|+...+.+.++.++++ .++.++.|..+... ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 479999999999 99999999999999999985 47899988886532 1378899999
Q ss_pred ----CCCeEEEEe-CCeEEE
Q 029703 152 ----KMPTIQIWK-DGEMKS 166 (189)
Q Consensus 152 ----~~Pt~~~~~-~G~~~~ 166 (189)
.+|+++++. +|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999999996 887764
No 130
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.84 E-value=1.5e-08 Score=64.49 Aligned_cols=57 Identities=25% Similarity=0.529 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh-----CCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-----GNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~-----~~i~~~Pt~~~~~~G~~~ 165 (189)
++.||++||++|+++.+.|.++ .+.+-.+|++..+. .... +++.++|++ ++.+|+.+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEG-AADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHh-HHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 5789999999999999988654 34456788877653 3444 489999997 56788654
No 131
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.84 E-value=5.9e-08 Score=72.73 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=65.4
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC------------------------hHHHHHhCC
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV------------------------SKDLVKRGN 149 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~------------------------~~~l~~~~~ 149 (189)
.++++||+|| +.||++|....+.|.++.+++. .++.++.|..+.. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999999998884 4566777665531 114788899
Q ss_pred CC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 150 IS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 150 i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+. ..|+.+++. +|+++..+.+........+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 469888885 99998876543322222355555443
No 132
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.84 E-value=5.6e-08 Score=71.55 Aligned_cols=75 Identities=9% Similarity=0.088 Sum_probs=61.1
Q ss_pred CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---------------------H-HHHHhCCCCC
Q 029703 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---------------------K-DLVKRGNISK 152 (189)
Q Consensus 96 ~~k~~vv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---------------------~-~l~~~~~i~~ 152 (189)
.+|+++|+||++| |++|....|.|.++++++ .++.++.|..+... . .+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4789999999999 999999999999999998 57888877766411 1 4788999988
Q ss_pred CC---------eEEEEe-CCeEEEEEeCC
Q 029703 153 MP---------TIQIWK-DGEMKSEVIGG 171 (189)
Q Consensus 153 ~P---------t~~~~~-~G~~~~~~~g~ 171 (189)
.| +.+++. +|+++..+.+.
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECC
Confidence 77 888885 99998887543
No 133
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.82 E-value=6.4e-08 Score=69.30 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCC----
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNIS---- 151 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~---- 151 (189)
++.+|++|+++||++|+...|.|.++.+++. .++.++.|..+... ..+.+.|++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~ 103 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLP 103 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCc
Confidence 4445555569999999999999999999984 46888888876532 1267778874
Q ss_pred -------------------------CCCeEEEEe-CCeEEEEEeC
Q 029703 152 -------------------------KMPTIQIWK-DGEMKSEVIG 170 (189)
Q Consensus 152 -------------------------~~Pt~~~~~-~G~~~~~~~g 170 (189)
..|+.+++. +|+++..+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 789888885 7887776655
No 134
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.81 E-value=1.3e-07 Score=72.32 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=63.2
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC----------hHHHHHhCCCCCCCeEEEEe-CC-
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV----------SKDLVKRGNISKMPTIQIWK-DG- 162 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~----------~~~l~~~~~i~~~Pt~~~~~-~G- 162 (189)
..++.-|++||.+.|+.|+.+.|++..+++++ ++.+..|++|.. ...++++++|..+|+++++. ++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 35788899999999999999999999999999 466666666531 12489999999999999996 44
Q ss_pred eEEEEEeCCCcc
Q 029703 163 EMKSEVIGGHKA 174 (189)
Q Consensus 163 ~~~~~~~g~~~~ 174 (189)
+....-.|..+.
T Consensus 196 ~~~pv~~G~~s~ 207 (215)
T PF13728_consen 196 KWYPVSQGFMSL 207 (215)
T ss_pred eEEEEeeecCCH
Confidence 566677788887
No 135
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.79 E-value=6.4e-08 Score=69.15 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=61.5
Q ss_pred CCCcEEEEEecCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---------------------h-HHHHHhCCCCC
Q 029703 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---------------------S-KDLVKRGNISK 152 (189)
Q Consensus 96 ~~k~~vv~f~a~w-C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---------------------~-~~l~~~~~i~~ 152 (189)
.+|++||+||+.| |++|+...|.+.++.+++ .++.++.|+.+.. . ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999998 699999999999999998 5788888887531 1 23677888763
Q ss_pred ------CCeEEEEe-CCeEEEEEeCCC
Q 029703 153 ------MPTIQIWK-DGEMKSEVIGGH 172 (189)
Q Consensus 153 ------~Pt~~~~~-~G~~~~~~~g~~ 172 (189)
.|+.+++. +|+++....|..
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCC
Confidence 68888886 999999888753
No 136
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.78 E-value=1.5e-07 Score=63.31 Aligned_cols=90 Identities=20% Similarity=0.369 Sum_probs=66.2
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCC-CC
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS-KM 153 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~-~~ 153 (189)
..+++.+++++++.. +..++++|+=+++.|+-..+....|++......+++.++.+|+-.+. +.++.+|||. .-
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 457889999999965 35899999999999999999999999999988556999999998874 3589999998 79
Q ss_pred CeEEEEeCCeEEEEEe
Q 029703 154 PTIQIWKDGEMKSEVI 169 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~ 169 (189)
|.+++++||+.+..-.
T Consensus 80 PQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 80 PQVILIKNGKVVWHAS 95 (105)
T ss_dssp SEEEEEETTEEEEEEE
T ss_pred CcEEEEECCEEEEECc
Confidence 9999999999987543
No 137
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.78 E-value=1.2e-07 Score=68.59 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=66.3
Q ss_pred CCCcEEEEEecC-CChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCCC
Q 029703 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISKM 153 (189)
Q Consensus 96 ~~k~~vv~f~a~-wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~~ 153 (189)
.+++++|+||+. ||+.|....+.+.++.++++ .++.++.|..+... ..+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 68889999999999999884 45888888775422 137788888654
Q ss_pred ------------CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 154 ------------PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 154 ------------Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
|+.+++. +|+++..+.|.... ...+++.++++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~-~~~~~~~~~~~ 153 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS-NHHDVVLDYLK 153 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence 6667775 99999999997665 22344555443
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.78 E-value=1.1e-07 Score=68.23 Aligned_cols=89 Identities=10% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC--------------------h--HHHHHhCCCCC
Q 029703 97 SQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV--------------------S--KDLVKRGNISK 152 (189)
Q Consensus 97 ~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~--------------------~--~~l~~~~~i~~ 152 (189)
+++++|.|| ++||+.|....|.+.++.+++. .++.++.|..+.. . ..+++.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 9999999999999999999984 4678877766531 1 23677888873
Q ss_pred ----C--CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 153 ----M--PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 153 ----~--Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
. |+.+++. +|+++.++.|..........+.+.|
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 3 3777885 9999999988762222224455444
No 139
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.71 E-value=6.2e-08 Score=62.68 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH----HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|+++||++|+.+.+.|.++. ..+.+.++.+|.+.... .+.+.+++.++|+++ .+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 47899999999999999998875 33447788888765432 266778999999974 478653
No 140
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.6e-07 Score=63.31 Aligned_cols=86 Identities=19% Similarity=0.369 Sum_probs=75.3
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
.++.+.+..++++.. ...+.+||-|.-.|-+.|..|...|.++++....-..++-+|+++.+. +.+.|++...||++
T Consensus 6 p~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTVM 82 (142)
T ss_pred cccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceEE
Confidence 346778888888865 568999999999999999999999999999997778899999998885 99999999999999
Q ss_pred EEeCCeEEE
Q 029703 158 IWKDGEMKS 166 (189)
Q Consensus 158 ~~~~G~~~~ 166 (189)
+|-+++.+.
T Consensus 83 fFfn~kHmk 91 (142)
T KOG3414|consen 83 FFFNNKHMK 91 (142)
T ss_pred EEEcCceEE
Confidence 997776554
No 141
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.67 E-value=9.4e-07 Score=61.36 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=72.0
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCe-E
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPT-I 156 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt-~ 156 (189)
.++.+....++++.. .+++.++|-|..+|-+.|.++...|.+++++.++-..++.+|+++.+. +.+.|.+. -|. +
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP~tv 78 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DPCTV 78 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SSEEE
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CCeEE
Confidence 457788999999876 679999999999999999999999999999998888999999999995 89999999 775 5
Q ss_pred EEEeCCeEEEEEeC
Q 029703 157 QIWKDGEMKSEVIG 170 (189)
Q Consensus 157 ~~~~~G~~~~~~~g 170 (189)
+||-+++.+.--.|
T Consensus 79 mFF~rnkhm~vD~G 92 (133)
T PF02966_consen 79 MFFFRNKHMMVDFG 92 (133)
T ss_dssp EEEETTEEEEEESS
T ss_pred EEEecCeEEEEEec
Confidence 55557776553334
No 142
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.66 E-value=2e-07 Score=60.76 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=56.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCC--CCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN--ISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~--i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
-++.|+.+||++|++....|+++..++ .++.+..+|++... +++....+ +..+|+++ .+|+.+. |.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~--- 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC--- 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH---
Confidence 367899999999999999999998876 57888899988652 23555555 58999975 4887642 33
Q ss_pred hhhHHHHHHHHHhh
Q 029703 175 WLVIEEVREMIKKF 188 (189)
Q Consensus 175 ~~~~~~l~~~i~~~ 188 (189)
++|.++++.+
T Consensus 73 ----~~~~~~~~~~ 82 (85)
T PRK11200 73 ----TDFEAYVKEN 82 (85)
T ss_pred ----HHHHHHHHHh
Confidence 5677777654
No 143
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.66 E-value=2.8e-07 Score=65.30 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------HHHHHhCCCCC
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------KDLVKRGNISK 152 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------~~l~~~~~i~~ 152 (189)
.+++++|.|| +.||++|....+.+.++.++++ ..+.++.|..+... ..+++.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 7899999999999999999883 46888888775421 13778888887
Q ss_pred CC---------eEEEEe-CCeEEEEEeCCCc
Q 029703 153 MP---------TIQIWK-DGEMKSEVIGGHK 173 (189)
Q Consensus 153 ~P---------t~~~~~-~G~~~~~~~g~~~ 173 (189)
.| ++++++ +|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 76 777776 7999999988764
No 144
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.65 E-value=8.2e-08 Score=68.31 Aligned_cols=44 Identities=14% Similarity=0.401 Sum_probs=38.1
Q ss_pred CCCcEEEEEecCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEEccC
Q 029703 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK 139 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~~----~v~~~~vd~~~ 139 (189)
.+++++|.||++||++ |....+.+.++.++++. ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999999853 48888887653
No 145
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.65 E-value=6.8e-07 Score=66.98 Aligned_cols=91 Identities=10% Similarity=0.048 Sum_probs=64.9
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh------------------------HHHHHhCC
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS------------------------KDLVKRGN 149 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~------------------------~~l~~~~~ 149 (189)
.+|++||+|| +.||+.|....+.|.++.+++. .++.++.|..+... ..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4679999999 9999999999999999999984 45777777665421 24788999
Q ss_pred C----CCC--CeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 150 I----SKM--PTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 150 i----~~~--Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+ .++ |+.+++. +|+++..+......+.-.+++.+.|+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8 356 9999996 99988766543222222244444443
No 146
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.1e-07 Score=63.29 Aligned_cols=80 Identities=21% Similarity=0.469 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEec--------CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh------HHHHH
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLVK 146 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a--------~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~------~~l~~ 146 (189)
...+.|++.+..- .+++.++|+|++ +|||.|.+..|.+.+..+....++.|+.+++..-+ ..+..
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 4467888888654 345559999986 69999999999999998877788999999987543 13666
Q ss_pred hCCC-CCCCeEEEEeC
Q 029703 147 RGNI-SKMPTIQIWKD 161 (189)
Q Consensus 147 ~~~i-~~~Pt~~~~~~ 161 (189)
..++ +++||++-+++
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 6777 99999998864
No 147
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.64 E-value=8.5e-07 Score=69.27 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=68.8
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----------HHHHHhCCCCCCCeEEEEe-C-Ce
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNISKMPTIQIWK-D-GE 163 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----------~~l~~~~~i~~~Pt~~~~~-~-G~ 163 (189)
.++.-+++||.+.|+.|+++.|+++.++++++ +.+..|++|... ..++++++|..+|+++++. + ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 46689999999999999999999999999994 555555555431 1378999999999999996 4 56
Q ss_pred EEEEEeCCCcchhhHHHHHHHHH
Q 029703 164 MKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 164 ~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
...--.|..+.+.+.+.+...+.
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHHh
Confidence 66677799998666555554443
No 148
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.7e-08 Score=74.89 Aligned_cols=89 Identities=12% Similarity=0.244 Sum_probs=78.2
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
..+...++| .. ...+..++.||++||.+|+.+...+..+++.. .++.+++++.+..++ ++..+.+..+|.++
T Consensus 4 ~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 4 QFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPYFV 75 (227)
T ss_pred eeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCceee
Confidence 334556667 33 47899999999999999999999999999988 889999999999996 99999999999999
Q ss_pred EEeCCeEEEEEeCCCcc
Q 029703 158 IWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~ 174 (189)
++..|+.+.+..|....
T Consensus 76 ~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 76 FFFLGEKVDRLSGADPP 92 (227)
T ss_pred eeecchhhhhhhccCcH
Confidence 99999999999888765
No 149
>PRK15000 peroxidase; Provisional
Probab=98.62 E-value=6.6e-07 Score=67.80 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK 146 (189)
Q Consensus 96 ~~k~~vv~f~a-~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 146 (189)
.+++++|+||+ .||+.|....+.|.+++++++ .++.++.|.++... ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 599999999999999999984 45777777766321 13677
Q ss_pred hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
.|++. .+|+.+++. +|++...+.+....+.-.+++...|+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 88987 799999996 99998887775544433455555554
No 150
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.56 E-value=7.5e-07 Score=66.48 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~ 138 (189)
.+|++||.|||+||++|+. .+.|+++.++|++ .+.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999974 8899999999953 6889999885
No 151
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.55 E-value=1.7e-07 Score=70.01 Aligned_cols=114 Identities=17% Similarity=0.275 Sum_probs=91.6
Q ss_pred CCCccceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCC
Q 029703 71 RPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI 150 (189)
Q Consensus 71 ~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i 150 (189)
.|.-..+.++.+..+|.+.+... .+.-.++|..|-+.-+-|..+...+.-+|.+| +.++|+++..+.-. ...+|..
T Consensus 134 gp~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~ 209 (273)
T KOG3171|consen 134 GPRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSL 209 (273)
T ss_pred CCccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhcc
Confidence 34455678889999999999532 23457888999999999999999999999999 89999999887654 5889999
Q ss_pred CCCCeEEEEeCCeEEEEEeCC---CcchhhHHHHHHHHHhh
Q 029703 151 SKMPTIQIWKDGEMKSEVIGG---HKAWLVIEEVREMIKKF 188 (189)
Q Consensus 151 ~~~Pt~~~~~~G~~~~~~~g~---~~~~~~~~~l~~~i~~~ 188 (189)
..+||+++|++|+.+..+... ...+.+...|..||+++
T Consensus 210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999999999998755432 33455667788888764
No 152
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.55 E-value=1.1e-06 Score=66.75 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC--------------------------hHHHHHh
Q 029703 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV--------------------------SKDLVKR 147 (189)
Q Consensus 96 ~~k~~vv-~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~--------------------------~~~l~~~ 147 (189)
.++.++| .||++||+.|....+.|.++.++++ .++.++.|.++.. ...+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3565555 6899999999999999999999884 3577777766531 1237888
Q ss_pred CCCC------CCCeEEEEe-CCeEEEEE----eCCCcchhhHHHHHHHHHh
Q 029703 148 GNIS------KMPTIQIWK-DGEMKSEV----IGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 148 ~~i~------~~Pt~~~~~-~G~~~~~~----~g~~~~~~~~~~l~~~i~~ 187 (189)
||+. .+|+.+++. +|++.... .+.++. +++...|+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~----~ellr~l~~ 152 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNI----DEIIRITKA 152 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCH----HHHHHHHHH
Confidence 8984 589999996 89887655 334555 555555543
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.51 E-value=1.3e-06 Score=75.79 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=89.9
Q ss_pred CccccCCCcccccee-cC--ceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEE
Q 029703 26 QPWSSGSSSCLLLQK-NS--AFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI 102 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv 102 (189)
..|++...|++.+.+ ++ ....|.|...--+..- + +.... ....+. .. + +. ...+.+. .=++++-|
T Consensus 413 ~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s-~-i~~i~-~~~~~~-~~---l-~~-~~~~~i~---~~~~~~~i 480 (555)
T TIGR03143 413 TLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNS-F-ILALY-NAAGPG-QP---L-GE-ELLEKIK---KITKPVNI 480 (555)
T ss_pred hhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHH-H-HHHHH-HhcCCC-CC---C-CH-HHHHHHH---hcCCCeEE
Confidence 567888899999986 33 2266666432211000 0 11111 111111 11 1 23 3333332 33566644
Q ss_pred -EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHH
Q 029703 103 -DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEV 181 (189)
Q Consensus 103 -~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l 181 (189)
.|.+++|+.|......+.+++.+. +++..-.+|....++ ++++|+|.++|++++ ||+.+ +.|..+. +++
T Consensus 481 ~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~~i--~~~~~--~~G~~~~----~~~ 550 (555)
T TIGR03143 481 KIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAIVV--DDQQV--YFGKKTI----EEM 550 (555)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEEEE--CCEEE--EeeCCCH----HHH
Confidence 557999999999999999999886 689999999999985 999999999999876 88754 5687777 677
Q ss_pred HHHH
Q 029703 182 REMI 185 (189)
Q Consensus 182 ~~~i 185 (189)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 6665
No 154
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.51 E-value=2.2e-06 Score=65.03 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHhCCCC
Q 029703 99 PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKRGNIS 151 (189)
Q Consensus 99 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~~~i~ 151 (189)
.+|+.|+++||+.|....+.|.++.++++ .++.++.|.++... ..+++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45557899999999999999999999984 45788887766421 2478889876
Q ss_pred ----C----CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 152 ----K----MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 152 ----~----~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+ +|+.+++. +|++...+.+........+++...|+.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2 34577775 999888776644333333556665543
No 155
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.50 E-value=2.4e-06 Score=65.45 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=64.2
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703 96 LSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR 147 (189)
Q Consensus 96 ~~k~-~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~ 147 (189)
.++. +|+.|+++||+.|....+.+.++.+++. .++.++.+.++... ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 4678899999999999999999999984 46788877776521 137888
Q ss_pred CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
||+. .+|+++++. +|+++..+......+.-.+++...|+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 8873 689999996 899877654322222222555555543
No 156
>PTZ00062 glutaredoxin; Provisional
Probab=98.48 E-value=6.5e-07 Score=67.78 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=67.5
Q ss_pred CccccCCCccccceecCce-EEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEEEE
Q 029703 26 QPWSSGSSSCLLLQKNSAF-FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDW 104 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f 104 (189)
..|+|.++||+.+|++|.. .-+.|..-.+.... .......++... ..+-+++++ +..+++|+-
T Consensus 56 ~d~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~------~~~~~~~~~~~~-----~~~~v~~li-----~~~~Vvvf~ 119 (204)
T PTZ00062 56 LADANNEYGVFEFYQNSQLINSLEGCNTSTLVSF------IRGWAQKGSSED-----TVEKIERLI-----RNHKILLFM 119 (204)
T ss_pred cccCcccceEEEEEECCEEEeeeeCCCHHHHHHH------HHHHcCCCCHHH-----HHHHHHHHH-----hcCCEEEEE
Confidence 3499999999999999877 44444432211111 001111111100 123455555 345555543
Q ss_pred e----cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 105 M----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 105 ~----a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
- .|||++|+++...|.+. ++.+..+|+++.++ .+.+..+...+|.+.+ +|+.+
T Consensus 120 Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 120 KGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred ccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 3 37999999987777643 46677788876642 2444457778888654 88764
No 157
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.48 E-value=1.7e-06 Score=61.96 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=33.2
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd 136 (189)
.+.++.++.|+.++|++|+.+.|.+.++..++ +++.+...+
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~ 43 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKE 43 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEe
Confidence 35788999999999999999999999988776 455555443
No 158
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.45 E-value=4.2e-06 Score=65.08 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=66.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--------HHHHHhCCCCCCCeEEEEe--CCeEE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--------KDLVKRGNISKMPTIQIWK--DGEMK 165 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--------~~l~~~~~i~~~Pt~~~~~--~G~~~ 165 (189)
.++.-|++||.+.|+.|.++.|+++.++++++=.+..+.+|..-.+ ...+++++|..+|+++++. .++..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 3568899999999999999999999999999544444555432221 1257899999999999996 45666
Q ss_pred EEEeCCCcchhhHHHHHHH
Q 029703 166 SEVIGGHKAWLVIEEVREM 184 (189)
Q Consensus 166 ~~~~g~~~~~~~~~~l~~~ 184 (189)
.--.|..+.+.+.+.+...
T Consensus 222 pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEeeccCCHHHHHHHHHHH
Confidence 7778999985555555443
No 159
>PRK13189 peroxiredoxin; Provisional
Probab=98.43 E-value=4.3e-06 Score=64.36 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCC-cEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703 96 LSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR 147 (189)
Q Consensus 96 ~~k-~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~ 147 (189)
.++ .+|+.|+++||+.|....+.|.+++++++ .++.++.|.++... ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 455 44557789999999999999999999884 45777777665321 137888
Q ss_pred CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
||+. .+|+.+++. +|++.....+....+...+++...|+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 8875 578889996 998877665333222222555555543
No 160
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.41 E-value=2.3e-06 Score=53.39 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=45.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhh
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLV 177 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~ 177 (189)
++.|+++||++|..+...+.+. ++.+..+|++.... .+.+..++.++|++++ +|+ .+.|...
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~---- 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRP---- 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCH----
Confidence 5779999999999988777652 46677778776543 2333347899999875 553 4455433
Q ss_pred HHHHHHH
Q 029703 178 IEEVREM 184 (189)
Q Consensus 178 ~~~l~~~ 184 (189)
+.|+++
T Consensus 67 -~~l~~~ 72 (73)
T cd02976 67 -DKLRAL 72 (73)
T ss_pred -HHHHhh
Confidence 455554
No 161
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.41 E-value=2e-06 Score=58.25 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=66.4
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~w--C~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
.+++++++ ......+++|.++. ++.+....-++-++.+.+.+.+..+.++-..+. .+..+|++..+|++++++
T Consensus 16 ~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~PaLvf~R 90 (107)
T PF07449_consen 16 ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRWPALVFFR 90 (107)
T ss_dssp CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSSSEEEEEE
T ss_pred hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccCCeEEEEE
Confidence 66888888 56677776665432 344445556888888889788888888854444 599999999999999999
Q ss_pred CCeEEEEEeCCCcc
Q 029703 161 DGEMKSEVIGGHKA 174 (189)
Q Consensus 161 ~G~~~~~~~g~~~~ 174 (189)
+|+.++.+.|-++.
T Consensus 91 ~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 91 DGRYLGAIEGIRDW 104 (107)
T ss_dssp TTEEEEEEESSSTH
T ss_pred CCEEEEEecCeecc
Confidence 99999999998876
No 162
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.39 E-value=7.9e-06 Score=59.24 Aligned_cols=84 Identities=26% Similarity=0.448 Sum_probs=65.9
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChH------------------------------
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSK------------------------------ 142 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~------------------------------ 142 (189)
.+.+++|+.|+...|++|+.+.+.+.++.+++ .+++.+...+.-....
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999998 7889888887632110
Q ss_pred -------------------------------------HHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 143 -------------------------------------DLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 143 -------------------------------------~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
..+.+++|.++||+++ ||+.+ .|..+. ++|.++|
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~----~~l~~~I 160 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTI----EELKELI 160 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSH----HHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCH----HHHHHHH
Confidence 0567789999999888 99874 777777 8888888
Q ss_pred Hh
Q 029703 186 KK 187 (189)
Q Consensus 186 ~~ 187 (189)
++
T Consensus 161 d~ 162 (162)
T PF13462_consen 161 DK 162 (162)
T ss_dssp HH
T ss_pred cC
Confidence 74
No 163
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.36 E-value=1.1e-05 Score=56.92 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=76.6
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecC--CChh-h-hhhhHHHHHHHHHhCCC-eEEEEEEccCChHHHHHhCCC
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCRK-C-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI 150 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~--wC~~-C-~~~~~~l~~~~~~~~~~-v~~~~vd~~~~~~~l~~~~~i 150 (189)
++.++++.+.++..= .+++..+|-|.-. .|.+ + ......+.++|++++++ +.|+.+|.+.... +.+.||+
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence 567777777777665 4567777777532 2322 3 35678999999999988 9999999999986 8999999
Q ss_pred C--CCCeEEEEeCCeEEEE-EeCCCcchhhHHHHHHHHHhhC
Q 029703 151 S--KMPTIQIWKDGEMKSE-VIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 151 ~--~~Pt~~~~~~G~~~~~-~~g~~~~~~~~~~l~~~i~~~l 189 (189)
. ++|+++++...+.... +.|..+. +.|.+|+++++
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~----e~i~~Fv~~~l 115 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSE----DGINEFLRELS 115 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCH----HHHHHHHHHHH
Confidence 5 5999999963322333 5577676 77888877653
No 164
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.34 E-value=1.1e-05 Score=61.87 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCCcEEE-EEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------------HHHHHh
Q 029703 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------------KDLVKR 147 (189)
Q Consensus 96 ~~k~~vv-~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------------~~l~~~ 147 (189)
.+|+++| .|+++||+.|....+.|.+++++++ .++.++.+.+|... ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 3565554 7789999999999999999999984 46778877776432 136777
Q ss_pred CCCC-------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 148 GNIS-------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 148 ~~i~-------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
||+. ..|+.+++. +|++...+.+....+.-.+++...|+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~ 158 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIR 158 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 8863 478888886 99988876554333323355555544
No 165
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.34 E-value=3.7e-06 Score=65.14 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=59.7
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---Ch------------------------------
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VS------------------------------ 141 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~------------------------------ 141 (189)
.+++..++.|..+.||+|+++.+.+.++.+ .++.+..+..-- ++
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 356788999999999999999999887754 224443322110 00
Q ss_pred ----------HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 142 ----------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 142 ----------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
..+++++||+++||++ +.||+.+ .|..+. +.|.++|++
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~----~~L~~~l~~ 229 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGP----KEMKAFLDE 229 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCH----HHHHHHHHH
Confidence 1289999999999998 6789764 788888 788888765
No 166
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.33 E-value=1.1e-05 Score=63.43 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=58.0
Q ss_pred CCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC---------------------------hHHHHH
Q 029703 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV---------------------------SKDLVK 146 (189)
Q Consensus 96 ~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~---------------------------~~~l~~ 146 (189)
.++++|++|| +.||++|....+.|.++.+++. .++.++.|.+|.. ...+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4677888887 8999999999999999999984 4577777766541 023788
Q ss_pred hCCCC-----CCCeEEEEe-CCeEEEEEe
Q 029703 147 RGNIS-----KMPTIQIWK-DGEMKSEVI 169 (189)
Q Consensus 147 ~~~i~-----~~Pt~~~~~-~G~~~~~~~ 169 (189)
.||+. ..|+.++++ +|++...+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 99985 589999996 999887663
No 167
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.29 E-value=3e-06 Score=63.97 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=55.2
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc--cCCh-------------------------------
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV--NKVS------------------------------- 141 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~--~~~~------------------------------- 141 (189)
.+.+..++.|+.+.|++|+++.+.+.+ ..+++.+..+.. ...+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 346889999999999999999998876 123343333221 1100
Q ss_pred -----------HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 142 -----------KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 142 -----------~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
..+++++||+++|+++ +.+|+. +.|..+. ++|.++|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~----~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPA----AQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCH----HHHHhhC
Confidence 1278999999999997 778876 4687776 6676653
No 168
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.28 E-value=1.8e-05 Score=59.89 Aligned_cols=90 Identities=9% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCCcEEEEEec-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh---------------------------HHHHH
Q 029703 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS---------------------------KDLVK 146 (189)
Q Consensus 96 ~~k~~vv~f~a-~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~---------------------------~~l~~ 146 (189)
.++.++|+||. .||+.|....+.+.++++++. .++.++.|+++... .++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999994 889999988889999999984 36788877776321 23788
Q ss_pred hCCCC------CCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 147 RGNIS------KMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 147 ~~~i~------~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
.||+. .+|+.+++. +|+++..+.+......-.+++...|
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 88985 468888886 8988877666443333334444444
No 169
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.28 E-value=9.4e-06 Score=59.79 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd 136 (189)
+.++.|+.|+...|++|+.+.+.+..+.+++.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 57899999999999999999999999999886666665443
No 170
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.27 E-value=8.2e-06 Score=64.34 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=76.8
Q ss_pred CccccCCCccccceecCceEEEeCCCccccccccceeeeecCCCCCCCccceeecCC-hhHHHHHHHHhhcCCCcEEEEE
Q 029703 26 QPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPIND-SDHLDQILLRAQELSQPILIDW 104 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~a~~~~k~~vv~f 104 (189)
..++|+|||||++|+++-..+|.|++..+.. ++....- ..+ -+..+.. ...|.++- +..++.+|+|
T Consensus 94 nefgiqGYPTIk~~kgd~a~dYRG~R~Kd~i-----ieFAhR~-a~a---iI~pi~enQ~~fehlq----~Rhq~ffVf~ 160 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFFKGDHAIDYRGGREKDAI-----IEFAHRC-AAA---IIEPINENQIEFEHLQ----ARHQPFFVFF 160 (468)
T ss_pred hhhccCCCceEEEecCCeeeecCCCccHHHH-----HHHHHhc-ccc---eeeecChhHHHHHHHh----hccCceEEEE
Confidence 7789999999999999999999999776331 1111100 111 1222332 23344444 6789999999
Q ss_pred ecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHh-CCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHH
Q 029703 105 MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-GNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 105 ~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~-~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
.+..-| +...+.+.+.+ ++.+.+.=..... ++-. -.....|.+.+|++...--...|.. ++|.+
T Consensus 161 Gtge~P----L~d~fidAASe---~~~~a~FfSasee--VaPe~~~~kempaV~VFKDetf~i~de~dd------~dLse 225 (468)
T KOG4277|consen 161 GTGEGP----LFDAFIDAASE---KFSVARFFSASEE--VAPEENDAKEMPAVAVFKDETFEIEDEGDD------EDLSE 225 (468)
T ss_pred eCCCCc----HHHHHHHHhhh---heeeeeeeccccc--cCCcccchhhccceEEEccceeEEEecCch------hHHHH
Confidence 765533 23344444443 2333332221111 2222 2356789999999875544444543 67888
Q ss_pred HHHh
Q 029703 184 MIKK 187 (189)
Q Consensus 184 ~i~~ 187 (189)
||++
T Consensus 226 WinR 229 (468)
T KOG4277|consen 226 WINR 229 (468)
T ss_pred HHhH
Confidence 8865
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.25 E-value=1.1e-05 Score=48.85 Aligned_cols=57 Identities=21% Similarity=0.417 Sum_probs=43.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|+.+||++|++....|++ .++.+-.+|++..+. ++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 577999999999998888743 357888888888742 3555559999999876 78653
No 172
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.25 E-value=8.8e-06 Score=53.19 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=53.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCC--CCCCeEEEEeCCeEEEEEeCCCcch
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNI--SKMPTIQIWKDGEMKSEVIGGHKAW 175 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i--~~~Pt~~~~~~G~~~~~~~g~~~~~ 175 (189)
++.|+.+||++|.+....|.++..++ +.+.+..+|++... .++...++- ..+|++++ +|+. .|..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----igG~--- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VGGC--- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ecCH---
Confidence 67789999999999999998876554 45778888887432 236666664 79999843 7765 3333
Q ss_pred hhHHHHHHHHHhh
Q 029703 176 LVIEEVREMIKKF 188 (189)
Q Consensus 176 ~~~~~l~~~i~~~ 188 (189)
++|.+++++.
T Consensus 72 ---~dl~~~~~~~ 81 (86)
T TIGR02183 72 ---TDFEQLVKEN 81 (86)
T ss_pred ---HHHHHHHHhc
Confidence 5677776653
No 173
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.22 E-value=2.3e-05 Score=51.99 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=71.1
Q ss_pred ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
.+.+.++++.++ ..+++++|-|+.++|+ .....+.++|+.+++.+.|+.+. .. .+++.+++. .|++++
T Consensus 3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~-~~~~~~~~~-~~~i~l 70 (97)
T cd02981 3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DK-EVAKKLKVK-PGSVVL 70 (97)
T ss_pred ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hH-HHHHHcCCC-CCceEE
Confidence 466778888877 6889999999999988 56778899999987778887665 23 377778775 489999
Q ss_pred EeCC-eEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 159 WKDG-EMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 159 ~~~G-~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
|+.. .....|.|..+. +.|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~----~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTE----ESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCH----HHHHHHHHh
Confidence 9753 444567887665 889999864
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.17 E-value=9e-06 Score=52.22 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=43.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHhCCCCCCCeEEEEeCCeE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
++.|+++||++|+.+.+.|.++.. .+.++.++.+... ..+.+..++.++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 577999999999999998887644 4567777776552 135566789999996 457765
No 175
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.13 E-value=2.9e-05 Score=53.25 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHH---hCCCeEEEEEEccCChHHHHHhCCCCC--CCeEE
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNISK--MPTIQ 157 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~---~~~~v~~~~vd~~~~~~~l~~~~~i~~--~Pt~~ 157 (189)
.++..... ..+.+..+.|+++. .-..+...+.+++++ +++++.|+.+|.+.... ..+.||++. +|.+.
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 6 FENAEELT----EEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIA 78 (111)
T ss_pred cccHHHHh----cCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEE
Confidence 55666777 56777776777332 335778899999999 99999999999999876 789999997 99999
Q ss_pred EEeC-CeEEEE-EeCCCcchhhHHHHHHHHHhhC
Q 029703 158 IWKD-GEMKSE-VIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 158 ~~~~-G~~~~~-~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+... +..... +.+..+. +.|.+|+++++
T Consensus 79 i~~~~~~~Ky~~~~~~~t~----~~i~~Fv~~~~ 108 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVP----GKLKQFVLDLH 108 (111)
T ss_pred EEcchhcCcCCCCccccCH----HHHHHHHHHHh
Confidence 9863 312222 4455555 88888888763
No 176
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.12 E-value=2.7e-05 Score=61.02 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=59.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc---CC--------------------------------
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN---KV-------------------------------- 140 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~---~~-------------------------------- 140 (189)
+.+.+|+.|..+.|++|+++.+.+.++.+. +++.+..+... ..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 457789999999999999999988776553 33444333210 00
Q ss_pred ----h----------HHHHHhCCCCCCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 141 ----S----------KDLVKRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 141 ----~----------~~l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
. ..+++++||+++|++++-+ +| .+....|..+. ++|.++|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~----~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDP----AQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCH----HHHHHHhC
Confidence 0 0277889999999999886 46 34567899888 77777765
No 177
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.12 E-value=3.8e-05 Score=61.72 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhh------hHHHHHHHHH-h-CCCeEEEEEEccCChHHHHHhCCCCCC
Q 029703 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYL------KPKLEKLAAE-F-DTKLKFYYVDVNKVSKDLVKRGNISKM 153 (189)
Q Consensus 82 ~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~------~~~l~~~~~~-~-~~~v~~~~vd~~~~~~~l~~~~~i~~~ 153 (189)
+..||++++ ++.+..+|+||.|--. -+.. ...+-+++.. + ...+.|+.||..+... +++++|+...
T Consensus 40 neKNfk~~l----Kkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKLgv~E~ 113 (383)
T PF01216_consen 40 NEKNFKRAL----KKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKLGVEEE 113 (383)
T ss_dssp -TTTHHHHH----HH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHHT--ST
T ss_pred chhHHHHHH----HhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhcCcccc
Confidence 477999999 6788899999988632 2222 2323334433 3 3579999999999985 9999999999
Q ss_pred CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+++.+|++|+.+ .|.|.+++ +.|.+||-.+
T Consensus 114 ~SiyVfkd~~~I-EydG~~sa----DtLVeFl~dl 143 (383)
T PF01216_consen 114 GSIYVFKDGEVI-EYDGERSA----DTLVEFLLDL 143 (383)
T ss_dssp TEEEEEETTEEE-EE-S--SH----HHHHHHHHHH
T ss_pred CcEEEEECCcEE-EecCccCH----HHHHHHHHHh
Confidence 999999999875 57799999 7777776543
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.12 E-value=3.8e-05 Score=66.27 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
+..-+..|++++|++|......+.+++.+. +++.+-.+|....++ ++++|+|.++|++++ ||+. .+.|..+.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~--~~~g~~~~ 187 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTVFL--NGEE--FGQGRMTL 187 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEEEE--CCcE--EEecCCCH
Confidence 444588899999999999999999998875 789999999999996 999999999999865 7764 36687777
No 179
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.07 E-value=2.6e-05 Score=50.07 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEEeCCeE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.++.-++.|+.+||++|++....|.+. ++.+-.+|++... ..+....+...+|.+++ +|+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 455557789999999999998888642 4666667776552 23556678999999854 8865
No 180
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.06 E-value=4.5e-05 Score=52.31 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=57.9
Q ss_pred hhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChHHHHHhCCCCC----CCeEEEEe-CCeEEEEEeCCC-cchhhHHHHH
Q 029703 110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNISK----MPTIQIWK-DGEMKSEVIGGH-KAWLVIEEVR 182 (189)
Q Consensus 110 ~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~~l~~~~~i~~----~Pt~~~~~-~G~~~~~~~g~~-~~~~~~~~l~ 182 (189)
..-..+...+.++|++++ +++.|+.+|.+.... ..+.||+.. +|++.++. ++ ......+.. +. +.|.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~----e~i~ 104 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDV----DALE 104 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCH----HHHH
Confidence 444678899999999999 699999999998875 789999984 99999986 44 223334444 55 8999
Q ss_pred HHHHhhC
Q 029703 183 EMIKKFV 189 (189)
Q Consensus 183 ~~i~~~l 189 (189)
+|+++++
T Consensus 105 ~F~~~f~ 111 (111)
T cd03073 105 EFLEDFF 111 (111)
T ss_pred HHHHHhC
Confidence 9998764
No 181
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.04 E-value=4.3e-05 Score=58.14 Aligned_cols=41 Identities=12% Similarity=0.424 Sum_probs=33.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEc
Q 029703 97 SQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDV 137 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~ 137 (189)
+++-||.|++-.|++|..+.+.+ ..+.+.+.+++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46779999999999999999876 778888866766666554
No 182
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.01 E-value=3.9e-05 Score=47.38 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMKS 166 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~~ 166 (189)
++.|+++||++|+.+...|.+.. +.+..+|++...+ .+.+..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56788999999999998887652 6677888877652 345556788899874 4886643
No 183
>PHA03050 glutaredoxin; Provisional
Probab=97.95 E-value=6.7e-05 Score=51.17 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---C---hHHHHHhCCCCCCCeEEEEeCCeEEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---V---SKDLVKRGNISKMPTIQIWKDGEMKS 166 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~---~~~l~~~~~i~~~Pt~~~~~~G~~~~ 166 (189)
|+.|..+|||+|++....|.+..-+. + .+-.+|++. . .+.+.+..|...+|+++ .+|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEEEe
Confidence 66799999999999888887653322 1 344555554 2 12466667889999974 3787653
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.90 E-value=0.00024 Score=45.87 Aligned_cols=71 Identities=13% Similarity=0.281 Sum_probs=50.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHH--HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~--l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
+..|..+||++|......|.+ .++.|-.+|++..++. ..+..+...+|++++ ++. ...|...
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~----- 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRP----- 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCH-----
Confidence 567889999999998877744 3588888899876641 233457889999864 553 3456655
Q ss_pred HHHHHHHHh
Q 029703 179 EEVREMIKK 187 (189)
Q Consensus 179 ~~l~~~i~~ 187 (189)
++|.+++..
T Consensus 67 ~~l~~~~~~ 75 (81)
T PRK10329 67 DMINRLHPA 75 (81)
T ss_pred HHHHHHHHh
Confidence 677777654
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.87 E-value=0.00014 Score=45.62 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=46.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh--HHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
++.|..+||+.|.+....|.+ + ++.+-.+|++... ..+....+...+|.++ .+|+.+. |.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~ig---g~------- 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELIG---GS------- 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEEe---CH-------
Confidence 567889999999999777764 2 4666677776654 2344556899999973 4787542 32
Q ss_pred HHHHHHH
Q 029703 179 EEVREMI 185 (189)
Q Consensus 179 ~~l~~~i 185 (189)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 5676665
No 186
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.00012 Score=54.54 Aligned_cols=105 Identities=21% Similarity=0.364 Sum_probs=78.5
Q ss_pred cceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCC
Q 029703 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154 (189)
Q Consensus 75 ~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P 154 (189)
..+.+|+.+ +|-+-+..| ..+-.|||..|...-+.|.-+...|+.++.+| +.++|+++-.+.. ...|.=...|
T Consensus 91 G~V~~ISg~-dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~c----IpNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGP-DYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTC----IPNYPESNLP 163 (240)
T ss_pred cceeeccch-HHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccc----cCCCcccCCC
Confidence 346667755 555555554 56778888999999999999999999999999 8999999876653 2345557899
Q ss_pred eEEEEeCCeEEEEEeCCCc---chhhHHHHHHHHH
Q 029703 155 TIQIWKDGEMKSEVIGGHK---AWLVIEEVREMIK 186 (189)
Q Consensus 155 t~~~~~~G~~~~~~~g~~~---~~~~~~~l~~~i~ 186 (189)
|+++|..|.+...+.|... .+...+.+..++-
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 9999999988887777543 2234466666653
No 187
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.83 E-value=0.00062 Score=46.93 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHH-HHh--CCCeEEEEEEccCC----hHHHHHhCCC--CCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEF--DTKLKFYYVDVNKV----SKDLVKRGNI--SKM 153 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~-~~~--~~~v~~~~vd~~~~----~~~l~~~~~i--~~~ 153 (189)
.-+|++++ ...+.++|.|=... |--.-...+.+++ +.. .+++.++.|.+.++ +.+|+++|+| ..+
T Consensus 11 ~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 11 ELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp TTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred ceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 55899999 78899999996544 2224456788888 433 36799999988764 2369999999 679
Q ss_pred CeEEEEe-CCeEEEEE--eCCCcchhhHHHHHHHHHhh
Q 029703 154 PTIQIWK-DGEMKSEV--IGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 154 Pt~~~~~-~G~~~~~~--~g~~~~~~~~~~l~~~i~~~ 188 (189)
|.+.+|. +.+..-++ .|..+. +.|+.|+.++
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~----~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTA----DNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-H----HHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCccH----HHHHHHHHhC
Confidence 9999997 55555667 666666 9999999864
No 188
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.82 E-value=0.0001 Score=48.18 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=44.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-------------------------------HHHHHhCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-------------------------------KDLVKRGN 149 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-------------------------------~~l~~~~~ 149 (189)
++.|+++.|++|..+.+.+.++.....+++.+....+.-.. ...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998666677776665442211 12567889
Q ss_pred CCCCCeEEEE
Q 029703 150 ISKMPTIQIW 159 (189)
Q Consensus 150 i~~~Pt~~~~ 159 (189)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999884
No 189
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.81 E-value=0.00029 Score=47.04 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEe----cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEE
Q 029703 85 HLDQILLRAQELSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQ 157 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~----a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~ 157 (189)
..++++ +..+++|+-. .+||++|......|.+. ++.+..+|++..+. .+.+..|...+|.+.
T Consensus 4 ~v~~~i-----~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 4 RIKEQI-----KENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHHh-----ccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 445555 3455666544 38999999988887653 35677788876542 355566788999974
Q ss_pred EEeCCeEE
Q 029703 158 IWKDGEMK 165 (189)
Q Consensus 158 ~~~~G~~~ 165 (189)
.+|+.+
T Consensus 73 --i~g~~i 78 (97)
T TIGR00365 73 --VKGEFV 78 (97)
T ss_pred --ECCEEE
Confidence 478653
No 190
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.81 E-value=0.00014 Score=45.61 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=42.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHH---hCCCCCCCeEEEEeCCeEEEEEeCCCc
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK---RGNISKMPTIQIWKDGEMKSEVIGGHK 173 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~---~~~i~~~Pt~~~~~~G~~~~~~~g~~~ 173 (189)
..|..++|++|++....|.+ .++.+-.+|++..+. ... +.|...+|++++ +|+. .+.|...
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVIVA--DGDL--SWSGFRP 65 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEEEE--CCCc--EEeccCH
Confidence 46788999999999888864 357778888887753 333 348889999754 5542 3455544
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.78 E-value=0.00011 Score=49.31 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH------HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~------~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|..+|||+|++....|.+. ++.+..+|++..++ .+.+..|...+|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 5568899999999988877653 34445566654431 24444578899996 4478654
No 192
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.78 E-value=0.00024 Score=44.67 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=40.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCC-CCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS-KMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~-~~Pt~~~~~~G~~~ 165 (189)
++.|+.+||++|......|.+. ++.+-.+|++..++ .+.+..+.. ++|+++ .+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence 5678899999999988888652 46777778877643 234446766 999864 478654
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.78 E-value=0.00037 Score=60.19 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=62.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchh
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWL 176 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~ 176 (189)
++.-+-.|.++.|++|......+.+++.+. +++..-.+|....++ ++++|++.++|++++ ||+. .+.|..+...
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~ 190 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAVFL--NGEE--FHNGRMDLAE 190 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEEEE--CCcE--EEecCCCHHH
Confidence 444588899999999999888888888876 789988999999996 999999999999875 6764 3668877743
Q ss_pred hHHH
Q 029703 177 VIEE 180 (189)
Q Consensus 177 ~~~~ 180 (189)
+.+.
T Consensus 191 ~~~~ 194 (515)
T TIGR03140 191 LLEK 194 (515)
T ss_pred HHHH
Confidence 3333
No 194
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.74 E-value=0.00016 Score=46.13 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|+.+||++|......|++. ++.+-.+|++..+. ++.+..+..++|+++ .+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 3568899999999998888753 35666667776643 345556889999974 477654
No 195
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.74 E-value=0.00039 Score=60.60 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe-CC
Q 029703 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK-DG 162 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~-~G 162 (189)
++++..+.. -.+...++.|+.+.|..|..+...++++++ +.+++.+...|..+... ++++|++...|++.+++ +|
T Consensus 355 ~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~-~~~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 355 QQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPE-SETLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchh-hHhhcCCCcCCEEEEEeCCC
Confidence 446666642 344456778888899999999999999885 45889998888877764 89999999999999995 66
Q ss_pred eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703 163 EMK-SEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 163 ~~~-~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+.. -+|.|.... .++..||..
T Consensus 431 ~~~~i~f~g~P~G----~Ef~s~i~~ 452 (555)
T TIGR03143 431 NYTGLKFHGVPSG----HELNSFILA 452 (555)
T ss_pred cccceEEEecCcc----HhHHHHHHH
Confidence 543 488898877 666666654
No 196
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.73 E-value=0.0003 Score=44.23 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=42.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|+.+||++|++....|++ .++.+-.+|++..+. ++.+..+-..+|+++ .+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 567889999999999888875 246677788877653 356666788999974 478654
No 197
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.63 E-value=0.00045 Score=45.44 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=42.4
Q ss_pred CCCcEEEEEec----CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 96 LSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 96 ~~k~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.+++|+-.+ +||++|+.....|.+. .+.+-.+|++..++ .+.+..|...+|.+ |.+|+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 34566665443 7999999988887664 36677777766542 35555688899996 4478653
No 198
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.61 E-value=0.00077 Score=44.77 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=74.4
Q ss_pred ecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCC----CC
Q 029703 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNIS----KM 153 (189)
Q Consensus 79 ~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~----~~ 153 (189)
.|.+-.+|.+++ ....-|+|.|..+-=.. ......+.++|+..++.-+++.|||.+. ...||+.+.|. --
T Consensus 5 ~i~d~KdfKKLL----RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLL----RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHH----hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 466778999999 67788888887665332 2344588889999989999999999874 23599999998 55
Q ss_pred C-eEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 154 P-TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 154 P-t~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
| ++.-|++|..-..|....+. ..+..|+.
T Consensus 80 ~~~LkHYKdG~fHkdYdR~~t~----kSmv~Flr 109 (112)
T cd03067 80 PVELKHYKDGDFHTEYNRQLTF----KSMVAFLR 109 (112)
T ss_pred cchhhcccCCCccccccchhhH----HHHHHHhh
Confidence 5 44557899887777776666 66666664
No 199
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00061 Score=54.11 Aligned_cols=107 Identities=15% Similarity=0.356 Sum_probs=77.0
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEEecC----CChhhhhhhHHHHHHHHHhC------C--CeEEEEEEccCChHHH
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMAS----WCRKCIYLKPKLEKLAAEFD------T--KLKFYYVDVNKVSKDL 144 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~----wC~~C~~~~~~l~~~~~~~~------~--~v~~~~vd~~~~~~~l 144 (189)
+.+.+ .+.|.+++. +...+-.++|+|.|. .|.-|+....++.-+++.+. + ++-|..||.++.++ +
T Consensus 42 VI~~n-~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~ 118 (331)
T KOG2603|consen 42 VIRMN-DDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-V 118 (331)
T ss_pred eEEec-Ccchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-H
Confidence 44444 568888885 224456688888864 69999999999999998862 1 57799999999996 8
Q ss_pred HHhCCCCCCCeEEEEe--CCeEEE--EEeCCCcchhhHHHHHHHHHh
Q 029703 145 VKRGNISKMPTIQIWK--DGEMKS--EVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 145 ~~~~~i~~~Pt~~~~~--~G~~~~--~~~g~~~~~~~~~~l~~~i~~ 187 (189)
-+.++++++|++++|. .|+... .+.+... ....|++.+|+++
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~-g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDL-GFEAEQIAQFVAD 164 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhc-chhHHHHHHHHHH
Confidence 9999999999999994 444331 2222111 1225888888875
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.54 E-value=0.00036 Score=44.94 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=57.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC----eEEEEEeCCCcchh
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG----EMKSEVIGGHKAWL 176 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G----~~~~~~~g~~~~~~ 176 (189)
++.|..+.|+-|..+...+.++.... .+.+-.+|++.++. +..+|+. .+|.+.+ +| .......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~-- 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDE-- 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-H--
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCEEEE--cCcccccccceeCCCCCH--
Confidence 67899999999999999998876554 58999999998885 9999995 8999665 44 112345566666
Q ss_pred hHHHHHHHHH
Q 029703 177 VIEEVREMIK 186 (189)
Q Consensus 177 ~~~~l~~~i~ 186 (189)
+.|.++|+
T Consensus 74 --~~L~~~L~ 81 (81)
T PF05768_consen 74 --EQLRAWLE 81 (81)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHhC
Confidence 78888774
No 201
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00085 Score=45.33 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHH----hCCCCCCCeEEEEe
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK----RGNISKMPTIQIWK 160 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~----~~~i~~~Pt~~~~~ 160 (189)
..++++ ...++|| |.-+||+.|..+...|.+ +.....++.+|-+.+..++.+ --+-+.+|.+++
T Consensus 6 ~v~~~i-----~~~~VVi-fSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI-- 73 (104)
T KOG1752|consen 6 KVRKMI-----SENPVVI-FSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI-- 73 (104)
T ss_pred HHHHHh-----hcCCEEE-EECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--
Confidence 445555 3455554 889999999997777766 555677888887766543433 345678998554
Q ss_pred CCeEE
Q 029703 161 DGEMK 165 (189)
Q Consensus 161 ~G~~~ 165 (189)
+|+.+
T Consensus 74 ~Gk~i 78 (104)
T KOG1752|consen 74 GGKFI 78 (104)
T ss_pred CCEEE
Confidence 88875
No 202
>PRK10638 glutaredoxin 3; Provisional
Probab=97.46 E-value=0.0011 Score=42.83 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=41.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.|..+||++|++....|.+. .+.+..+|++..+ .++.+..+...+|+++ .+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 5567889999999988887753 4566677777654 2355667888999874 378664
No 203
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=42.21 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=39.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh----HHHHHhC-CCCCCCeEEEEeCCeE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----KDLVKRG-NISKMPTIQIWKDGEM 164 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~l~~~~-~i~~~Pt~~~~~~G~~ 164 (189)
++.|.-++||+|++....|.+ ..+.+..++++..+ ++..++. |.+.+|.+++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 567889999999998877762 35667777776655 2234444 7899999765 7763
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=97.34 E-value=0.0018 Score=44.54 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhcCCCcEEEEEec----CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCCCCCCeE
Q 029703 84 DHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNISKMPTI 156 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i~~~Pt~ 156 (189)
+..++.+ ++.+|+|+--+ ||||+|++....|.++. +.+..+|++..++ .+.+.-|...+|.+
T Consensus 6 ~~v~~~I-----~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 6 EKIQRQI-----AENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHHH-----hcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 4455666 34556665443 69999999888886652 3444556655532 35555678899985
Q ss_pred EEEeCCeEEE
Q 029703 157 QIWKDGEMKS 166 (189)
Q Consensus 157 ~~~~~G~~~~ 166 (189)
.+ +|+.++
T Consensus 75 FI--~G~~IG 82 (115)
T PRK10824 75 WV--DGELVG 82 (115)
T ss_pred EE--CCEEEc
Confidence 54 887753
No 205
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.29 E-value=0.0031 Score=48.60 Aligned_cols=49 Identities=12% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~ 137 (189)
.+-+.. ++++|.|++|.|-.||+-+.-.+.++++++++.+.+.|+.|-+
T Consensus 94 ~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 94 RILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred eHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 455555 7899999999999999999999999999999976556655433
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.16 E-value=0.0099 Score=39.86 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=66.1
Q ss_pred eecCChhHHHHHHHHhhc-CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 78 EPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~-~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
..+++.+++++++ . ++..++|-|+..--+ .....+.++|+.++.++.|+... .. .+...+++. .|++
T Consensus 3 ~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~-~~~~~~~~~-~~~i 70 (102)
T cd03066 3 EIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DS-KVAKKLGLK-MNEV 70 (102)
T ss_pred eEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cH-HHHHHcCCC-CCcE
Confidence 4577888999999 6 677777767665444 35567888899887778885433 23 367777765 7999
Q ss_pred EEEeC-CeEEEEE-eCCCcchhhHHHHHHHHHhh
Q 029703 157 QIWKD-GEMKSEV-IGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 157 ~~~~~-G~~~~~~-~g~~~~~~~~~~l~~~i~~~ 188 (189)
+++++ ......| .|..+. +.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~----~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSE----EELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCH----HHHHHHHHHh
Confidence 99964 3333457 565566 8999998753
No 207
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.10 E-value=0.0026 Score=47.22 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=25.7
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v 135 (189)
+|..|.|+.|-.+.|.+.++..+++.++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999777665444
No 208
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.09 E-value=0.035 Score=39.39 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred HHHHHHHHh----hcCCCcEEEEEecCCC----hhhhhhh--HHHHHHHHHhCCCeEEEEEEccCChH------------
Q 029703 85 HLDQILLRA----QELSQPILIDWMASWC----RKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKVSK------------ 142 (189)
Q Consensus 85 ~~~~~~~~a----~~~~k~~vv~f~a~wC----~~C~~~~--~~l~~~~~~~~~~v~~~~vd~~~~~~------------ 142 (189)
.|++++..| +++.|+.+|+.+++.- ..|+... +.+.++. +.++.+..-|++....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl---~~nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYL---SQNFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHH---HcCEEEEeeeccchhhhhHHHHhhhhhh
Confidence 456666665 6789999999999876 4454432 3444443 3568888888776531
Q ss_pred -----HHHHhCCCCCCCeEEEEe-C-C--eEEEEEeCCCcchhhHHHHHHHHH
Q 029703 143 -----DLVKRGNISKMPTIQIWK-D-G--EMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 143 -----~l~~~~~i~~~Pt~~~~~-~-G--~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
..++.++...+|.+.++- . + .++.++.|..+++++.+.|...++
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 246668899999999983 2 2 577899999999777777777665
No 209
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0025 Score=55.81 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEEccCChHHHHHhC--------CCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NIS 151 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~~~~l~~~~--------~i~ 151 (189)
++.|.+.- ..+||++|....+||..|..|... + .++++-++..+.-++||-++-|+ +-+.| |-.
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Ym~~~q~~tG~G 107 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLYMNASQAITGQG 107 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHHHHHHHHhccCC
Confidence 56677766 789999999999999999998632 2 34555555668888998888774 44444 356
Q ss_pred CCCeEEEEe-CCeEEE
Q 029703 152 KMPTIQIWK-DGEMKS 166 (189)
Q Consensus 152 ~~Pt~~~~~-~G~~~~ 166 (189)
++|-.+|+. +|++..
T Consensus 108 GWPLtVfLTPd~kPFf 123 (667)
T COG1331 108 GWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCceeEEECCCCceee
Confidence 899888884 999875
No 210
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.93 E-value=0.013 Score=39.50 Aligned_cols=94 Identities=9% Similarity=0.171 Sum_probs=65.2
Q ss_pred eecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
..+.+.+++++++ ..++.++|-|+..--. .....+.++|+.++.++.|+...- . .+...+++ .|+++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~-~~~~~~~~--~~~iv 69 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---K-QLLEKYGY--GEGVV 69 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---H-HHHHhcCC--CCceE
Confidence 4567788899988 5677777777766444 456788888998877788855432 3 37788888 78888
Q ss_pred EEeC------C-eEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 158 IWKD------G-EMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 158 ~~~~------G-~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|+. - .....|.|..+. +.|.+||..+
T Consensus 70 l~~p~~~~~k~de~~~~y~g~~~~----~~l~~fi~~~ 103 (104)
T cd03069 70 LFRPPRLSNKFEDSSVKFDGDLDS----SKIKKFIREN 103 (104)
T ss_pred EEechhhhcccCcccccccCcCCH----HHHHHHHHhh
Confidence 8831 1 122347776555 8999999764
No 211
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.033 Score=40.43 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=62.3
Q ss_pred cCCCcEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCCh--------------------HHHHHhCCCCC
Q 029703 95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVS--------------------KDLVKRGNISK 152 (189)
Q Consensus 95 ~~~k~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~--------------------~~l~~~~~i~~ 152 (189)
-.++++|++|| ..+++.|-...-.+++...++. -++.++.|..|... ..+++.|||..
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 45779999999 6788889888888888887773 35777777766532 23788888743
Q ss_pred ------------CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 153 ------------MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 153 ------------~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.++..++. +|++...+..... ..-.+++.+.|++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~-~~h~~~vl~~l~~ 154 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV-KGHADEVLAALKK 154 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCC-cccHHHHHHHHHH
Confidence 46667775 8998887744332 2233555555554
No 212
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.79 E-value=0.021 Score=42.30 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=24.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHh
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~ 126 (189)
.|.+|+..-||+|....+.+.++.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999998
No 213
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.77 E-value=0.014 Score=42.89 Aligned_cols=66 Identities=27% Similarity=0.298 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC-eEEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703 114 YLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG-EMKSEVIGG-HKAWLVIEEVREMIKKF 188 (189)
Q Consensus 114 ~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G-~~~~~~~g~-~~~~~~~~~l~~~i~~~ 188 (189)
.....+.++|+.+.+.+.|+.+. .. ++++.+++.. |++++|+++ +....|.|. .+. +.|.+||..+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~-~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~----~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NE-ELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTP----EELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----H-HHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HH-HHHHHhCCCC-CcEEEeccCCCCceecccccCCH----HHHHHHHHHh
Confidence 45678899999998789999887 34 4899999999 999999863 445788887 556 8999999864
No 214
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.75 E-value=0.00036 Score=48.14 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=32.9
Q ss_pred hHHHHHHhhc----cccccCCccccC--CCccccceecCc---eEEEeCC-Ccc
Q 029703 10 ILYQELHRRE----GKQQFQQPWSSG--SSSCLLLQKNSA---FFWVDTA-SRS 53 (189)
Q Consensus 10 ~~~~~~~~~~----~~~~~~~~~~i~--g~Ptl~~~~~~~---~~~~~g~-~~~ 53 (189)
+++.++++.+ .-..+|+.|+|+ |||||++|++|. +..|.|. +..
T Consensus 52 v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~ 105 (116)
T cd03007 52 LLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTV 105 (116)
T ss_pred eEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccH
Confidence 6667777731 226699999999 999999999884 3678775 443
No 215
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.61 E-value=0.002 Score=51.18 Aligned_cols=139 Identities=13% Similarity=0.188 Sum_probs=73.2
Q ss_pred cCCccccCCCccccceecCce--EEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEE
Q 029703 24 FQQPWSSGSSSCLLLQKNSAF--FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPIL 101 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~v 101 (189)
.-+.|.|+.|||+++|++|.. ..|.|.|..+..... ++. ..+.| +.+..+.++++.... .+++.++
T Consensus 64 ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~ef--i~k---q~s~~----i~Ef~sl~~l~n~~~---p~K~~vI 131 (375)
T KOG0912|consen 64 IADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEF--IEK---QLSDP----INEFESLDQLQNLDI---PSKRTVI 131 (375)
T ss_pred HhhhhccccCceeeeeeccchhhhhhccchhHHHHHHH--HHH---HhccH----HHHHHhHHHHHhhhc---cccceEE
Confidence 447899999999999999977 467776544321110 010 11111 333344556666551 2556666
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEE--EEeCCCcchhhHH
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKS--EVIGGHKAWLVIE 179 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~--~~~g~~~~~~~~~ 179 (189)
.+|-+..-+. ...+.+++.-+..+..|..- ..+. .....-.+.+ +++|+.+.... .|.|..+. -+
T Consensus 132 gyF~~kdspe----y~~~~kva~~lr~dc~f~V~-~gD~----~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~n---f~ 198 (375)
T KOG0912|consen 132 GYFPSKDSPE----YDNLRKVASLLRDDCVFLVG-FGDL----LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTN---FD 198 (375)
T ss_pred EEeccCCCch----HHHHHHHHHHHhhccEEEee-cccc----ccCCCCCCCc-eEEeCCCcCCcCccccccccc---HH
Confidence 6776555443 34566677767666554432 1111 1111112222 44444332222 47886542 27
Q ss_pred HHHHHHHh
Q 029703 180 EVREMIKK 187 (189)
Q Consensus 180 ~l~~~i~~ 187 (189)
.|.+||++
T Consensus 199 el~~Wi~d 206 (375)
T KOG0912|consen 199 ELKQWIQD 206 (375)
T ss_pred HHHHHHHh
Confidence 88888875
No 216
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.38 E-value=0.017 Score=48.63 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=40.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH--HHHHh---------CCCCCCCeEEEEeCCeEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKR---------GNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~l~~~---------~~i~~~Pt~~~~~~G~~~ 165 (189)
|+.|..+|||+|++....|.+. ++.+-.+|+++.+. ++.++ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6678999999999987777652 57777888886653 12122 46789999855 77644
No 217
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.37 E-value=0.0013 Score=45.73 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=26.9
Q ss_pred cccCCccccCCCccccceecCceEEEeCCCcc
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTASRS 53 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~~~~ 53 (189)
..+++.|+|+|+|||++|++|....|.|.+..
T Consensus 77 ~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~ 108 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAA 108 (120)
T ss_pred HHHHHHcCCccccEEEEEECCEEEEeeCCCCH
Confidence 56789999999999999999987668776533
No 218
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.0039 Score=53.48 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHh-hccccccCCccccCCCccccceecCce-----EEEeCCCcc----ccccccceeee------ecCCCCCCCccc
Q 029703 13 QELHR-REGKQQFQQPWSSGSSSCLLLQKNSAF-----FWVDTASRS----KSARRDVRVEA------LWPDLSRPTSVE 76 (189)
Q Consensus 13 ~~~~~-~~~~~~~~~~~~i~g~Ptl~~~~~~~~-----~~~~g~~~~----~~~~~~~~~~~------~~~~~~~~~~~~ 76 (189)
..++| .+.-+.+|.+++|++||||++|..+.- ..+.|.... +...+.+..+. .||...+
T Consensus 96 aaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~p----- 170 (606)
T KOG1731|consen 96 AAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDP----- 170 (606)
T ss_pred EEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCC-----
Confidence 44667 555699999999999999999986532 233331111 01111111111 2222221
Q ss_pred eeecCChhHHHHHHHHhhcCCCcEEEEE-ecCCChhhhhhhHHHHHHHHHhC-CCeEEEEE-EccCChHHHHHhCCCCCC
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDW-MASWCRKCIYLKPKLEKLAAEFD-TKLKFYYV-DVNKVSKDLVKRGNISKM 153 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f-~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v-d~~~~~~~l~~~~~i~~~ 153 (189)
+...++..++.+.+. .....+-|-| -.+. .--++.+...+. +++.+..+ |....+ +.+ +++...
T Consensus 171 l~~~~~~~~l~~~~~---~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~~v~vr~~~d~q~~~--~~~-l~~~~~ 237 (606)
T KOG1731|consen 171 LKDTTTLEELDEGIS---TTANYVAIVFETEPS-------DLGWANLLNDLPSKQVGVRARLDTQNFP--LFG-LKPDNF 237 (606)
T ss_pred CCCcchHHHHhcccc---cccceeEEEEecCCc-------ccHHHHHHhhccCCCcceEEEecchhcc--ccc-cCCCCc
Confidence 122222333333331 1222333333 2332 113444444442 33333333 333333 456 899999
Q ss_pred CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
|+.+++++|+...-.....+.+...++|.++|.
T Consensus 238 ~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 238 PLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred hhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 999999999875544444555455566666653
No 219
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.059 Score=41.76 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=27.1
Q ss_pred HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
++..+||.++||+++ +|+ .+.|..+. ++|.+.|..
T Consensus 207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~----~~l~~~i~~ 241 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGK---LVPGLPDL----DELKAIIDE 241 (244)
T ss_pred HHHhcCCCcCCeEEE--CCe---eecCCCCH----HHHHHHHHH
Confidence 788899999999887 454 56787776 777777765
No 220
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.05 E-value=0.23 Score=32.85 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.+++...+.. -.+...++.|..+. ..|..+...++++++-- +++.+-..+... ..|++.+..+|
T Consensus 7 ~~qL~~~f~~--l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~------------~~P~~~i~~~~ 70 (94)
T cd02974 7 KQQLKAYLER--LENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHh--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC------------CCCEEEEecCC
Confidence 3455666631 23444455565554 88999988888887754 666664333211 47999998776
Q ss_pred eEE-EEEeCCCcchhhHHHHHHHHHhh
Q 029703 163 EMK-SEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 163 ~~~-~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+.. -+|.|.... .++..||...
T Consensus 71 ~~~gIrF~GiP~G----hEf~Slilai 93 (94)
T cd02974 71 EDTGIRFAGIPMG----HEFTSLVLAL 93 (94)
T ss_pred CcccEEEEecCCc----hhHHHHHHHh
Confidence 432 488998887 7888887654
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.54 E-value=0.092 Score=37.78 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=36.2
Q ss_pred CChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCCC----CCCCeEEEEeCCeEEE
Q 029703 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNI----SKMPTIQIWKDGEMKS 166 (189)
Q Consensus 108 wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~i----~~~Pt~~~~~~G~~~~ 166 (189)
+|++|+.+...|+.. .+.+-.+|++..++ ++.+.++- ..+|.+.+ +|+.+.
T Consensus 15 t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 15 TFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred cChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 899999988887653 47788889877642 35555554 68888554 786543
No 222
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.40 E-value=0.5 Score=31.95 Aligned_cols=96 Identities=11% Similarity=0.129 Sum_probs=61.2
Q ss_pred eecCChhHHHHHHHHhhcCC-CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeE
Q 029703 78 EPINDSDHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 78 ~~i~~~~~~~~~~~~a~~~~-k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
..+.+.++++.++ ... +.++|-|+..--+ .....+.++|+.+.+++.|+...- . .+...+++. .|.+
T Consensus 3 ~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~-~~~~~~~~~-~~~v 70 (107)
T cd03068 3 KQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---S-EIFKSLKVS-PGQL 70 (107)
T ss_pred eEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---H-HHHHhcCCC-CCce
Confidence 4577888999988 444 6666666655433 356678889999877888855432 3 367788875 5677
Q ss_pred EEEeCC-------eEEEEEeCC-CcchhhHHHHHHHHHhh
Q 029703 157 QIWKDG-------EMKSEVIGG-HKAWLVIEEVREMIKKF 188 (189)
Q Consensus 157 ~~~~~G-------~~~~~~~g~-~~~~~~~~~l~~~i~~~ 188 (189)
++|+.- .....|.|. ... .+.|..||+.+
T Consensus 71 vl~rp~~~~~k~e~~~~~~~~~~~~~---~~~~~~f~~~~ 107 (107)
T cd03068 71 VVFQPEKFQSKYEPKSHVLNKKDSTS---EDELKDFFKEH 107 (107)
T ss_pred EEECcHHHhhhcCcceeeeeccccch---HHHHHHHHhcC
Confidence 777221 122355655 333 14499998764
No 223
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.05 E-value=0.0095 Score=40.89 Aligned_cols=31 Identities=10% Similarity=-0.253 Sum_probs=24.4
Q ss_pred ccC-CccccCCCccccceecCce-EEEeCCCcc
Q 029703 23 QFQ-QPWSSGSSSCLLLQKNSAF-FWVDTASRS 53 (189)
Q Consensus 23 ~~~-~~~~i~g~Ptl~~~~~~~~-~~~~g~~~~ 53 (189)
..| ..|+|.+|||+++|++|.. ..|.|.+..
T Consensus 74 ~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~ 106 (113)
T cd03006 74 GKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRA 106 (113)
T ss_pred HHHHHhcCCcccCEEEEEECCccceEEeCCCCH
Confidence 468 5899999999999998764 667776544
No 224
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.84 E-value=0.18 Score=31.10 Aligned_cols=58 Identities=10% Similarity=0.229 Sum_probs=38.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
+.|+.+||+.|++..-.+.+. +-.+.+..+|....+.++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 357789999999876666543 22456666666544434666677889999853 34654
No 225
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.67 E-value=0.012 Score=39.63 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=28.0
Q ss_pred hHHHHHHhhccccccCCccccCCCccccceecCce--EEEeCCC
Q 029703 10 ILYQELHRREGKQQFQQPWSSGSSSCLLLQKNSAF--FWVDTAS 51 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~i~g~Ptl~~~~~~~~--~~~~g~~ 51 (189)
+.+..+++... ...|+.|+|++|||+.+|++|.. ..|.|.+
T Consensus 57 ~~~~~vd~d~~-~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~ 99 (108)
T cd02996 57 VVWGKVDCDKE-SDIADRYRINKYPTLKLFRNGMMMKREYRGQR 99 (108)
T ss_pred EEEEEEECCCC-HHHHHhCCCCcCCEEEEEeCCcCcceecCCCC
Confidence 33344444222 45789999999999999999873 5555543
No 226
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.65 E-value=0.43 Score=39.87 Aligned_cols=98 Identities=8% Similarity=0.073 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCCCcEEEEEecCCChhhhhhh-HHH-HHHH-HHhCCCeEEEEEEccCCh-HHHHHhCCCCCCCeEEEEe
Q 029703 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLK-PKL-EKLA-AEFDTKLKFYYVDVNKVS-KDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 85 ~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~-~~l-~~~~-~~~~~~v~~~~vd~~~~~-~~l~~~~~i~~~Pt~~~~~ 160 (189)
++-..+..+ +.++.++|.|-+.......+|. -.| .... +.+...+..++|+..... ..++.-|.+..+|++.++.
T Consensus 7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 444566666 4556666666666555555555 122 2222 222234455555543321 1378889999999999994
Q ss_pred -CCeEEEEEeCCCcchhhHHHHHH
Q 029703 161 -DGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 161 -~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
.|..+....|....++|...|.+
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEK 109 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHH
Confidence 99999999999998444444443
No 227
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.58 E-value=0.16 Score=36.67 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=47.6
Q ss_pred CCcEEEEE-ecCCChhhhhh-hHHHHHHHHHhC-CCe-EEEEEEccCCh----------------------HHHHHhCCC
Q 029703 97 SQPILIDW-MASWCRKCIYL-KPKLEKLAAEFD-TKL-KFYYVDVNKVS----------------------KDLVKRGNI 150 (189)
Q Consensus 97 ~k~~vv~f-~a~wC~~C~~~-~~~l~~~~~~~~-~~v-~~~~vd~~~~~----------------------~~l~~~~~i 150 (189)
+++++|.| .+.||+.|... .+.|.+..+++. ..+ .++.+..+... ..+++.||+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 45555555 58999999998 889988888873 344 46666554321 236777776
Q ss_pred C------C-----CCeEEEEeCCeEEEEEeCC
Q 029703 151 S------K-----MPTIQIWKDGEMKSEVIGG 171 (189)
Q Consensus 151 ~------~-----~Pt~~~~~~G~~~~~~~g~ 171 (189)
. + ..+.+++++|++...+...
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 3 1 2344555677776655443
No 228
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.20 E-value=0.018 Score=45.93 Aligned_cols=84 Identities=12% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-ccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcch
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD-VNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAW 175 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd-~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~ 175 (189)
..++=+.||+.||+..+..+|.+.-....+ ..+....++ ....+ .+..+|++.+.|++++. +-.-..++.|.+..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lp-sv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l- 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALP-SVFSSYGIHSEPSNLML-NQTCPASYRGERDL- 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhcc-cchhccccccCCcceee-ccccchhhcccccH-
Confidence 567889999999999999999998877776 344444433 22234 37899999999999887 44445677888776
Q ss_pred hhHHHHHHHHHh
Q 029703 176 LVIEEVREMIKK 187 (189)
Q Consensus 176 ~~~~~l~~~i~~ 187 (189)
..|..|..+
T Consensus 152 ---~sLv~fy~~ 160 (319)
T KOG2640|consen 152 ---ASLVNFYTE 160 (319)
T ss_pred ---HHHHHHHHh
Confidence 555555443
No 229
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.13 E-value=0.013 Score=38.88 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=22.7
Q ss_pred cccCCccccCCCccccceecCce-EEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
..+|+.|+|++|||+.+|++|.. ..|.|.
T Consensus 62 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 91 (101)
T cd03003 62 RMLCRSQGVNSYPSLYVFPSGMNPEKYYGD 91 (101)
T ss_pred HHHHHHcCCCccCEEEEEcCCCCcccCCCC
Confidence 56789999999999999998754 444443
No 230
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.12 E-value=0.6 Score=40.47 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.+++..++. .=.+++-+.++.+.|..|..+...++++++.- +++.+-..+.. ...|++.+..+|
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~------------~~~p~~~~~~~~ 70 (517)
T PRK15317 7 KTQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD------------VRKPSFSITRPG 70 (517)
T ss_pred HHHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC------------CCCCEEEEEcCC
Confidence 345666663 33566655555558999999999999987764 77766442211 347999998877
Q ss_pred eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703 163 EMK-SEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 163 ~~~-~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+.. -+|.|.... .++..||..
T Consensus 71 ~~~~i~f~g~P~g----~Ef~s~i~~ 92 (517)
T PRK15317 71 EDTGVRFAGIPMG----HEFTSLVLA 92 (517)
T ss_pred ccceEEEEecCcc----HHHHHHHHH
Confidence 554 488998887 666666654
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.00 E-value=0.26 Score=30.86 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=44.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
+..|-+..-+-.+.....+.++-+++ ++.+.+-.||+.++++ ++..++|-.+||++=
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLvk 61 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechhhh
Confidence 44454555577777777777777765 6789999999999996 999999999999764
No 232
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=93.92 E-value=1.5 Score=30.71 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=55.9
Q ss_pred ceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChhhh--hhhHHHHHHHHHhCCCeEEEEEEccCChHH--HHHhCC--
Q 029703 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCI--YLKPKLEKLAAEFDTKLKFYYVDVNKVSKD--LVKRGN-- 149 (189)
Q Consensus 76 ~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~--~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~--l~~~~~-- 149 (189)
.+.++.|.++.++.+.. .++..+|. -.+-|| |. ..+|-.......-+.--.++.|=.....+. -++.|=
T Consensus 17 Gf~eL~T~e~Vd~~~~~---~~GTtlVv-VNSVCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKN---KEGTTLVV-VNSVCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp T-EE--SHHHHHHHHHH-----SEEEEE-EE-SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTT
T ss_pred CccccCCHHHHHHHHhC---CCCcEEEE-Eecccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCC
Confidence 46678899999999941 44444443 377787 64 345655544433211223344433333221 233432
Q ss_pred -CCCCCeEEEEeCCeEEEEEeC----CCcchhhHHHHHHHHHhh
Q 029703 150 -ISKMPTIQIWKDGEMKSEVIG----GHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 150 -i~~~Pt~~~~~~G~~~~~~~g----~~~~~~~~~~l~~~i~~~ 188 (189)
-.+-|++.+|++|+++.-+.- .++...+.++|.+.++++
T Consensus 92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 247899999999999874432 245556667777666654
No 233
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.60 E-value=0.027 Score=37.56 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=24.9
Q ss_pred ccccCCccccCCCccccceecCceEEEeCCC
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAFFWVDTAS 51 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~~ 51 (189)
....++.|+|.++||+.+|++|....|.|.+
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred CHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 3557789999999999999988556676654
No 234
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.40 E-value=0.97 Score=39.17 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=57.3
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.+++...+. .=.+++-+.++.+.|..|..+...++++++.- +++.+..-+.+ ....|++.+..+|
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~-----------~~~~p~~~~~~~~ 71 (515)
T TIGR03140 7 LAQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTAD-----------TLRKPSFTILRDG 71 (515)
T ss_pred HHHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCC-----------cCCCCeEEEecCC
Confidence 346666663 23555655555447999999999998887754 77777443322 1356999998777
Q ss_pred eEE-EEEeCCCcchhhHHHHHHHHHh
Q 029703 163 EMK-SEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 163 ~~~-~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
+.. -+|.|.... .++..||..
T Consensus 72 ~~~~i~f~g~P~g----~Ef~s~i~~ 93 (515)
T TIGR03140 72 ADTGIRFAGIPGG----HEFTSLVLA 93 (515)
T ss_pred cccceEEEecCCc----HHHHHHHHH
Confidence 643 488998887 666666654
No 235
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.17 E-value=0.045 Score=36.19 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=23.4
Q ss_pred cccCCccccCCCccccceecCceEEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~ 50 (189)
...|+.|+|.++||+.++++|....|.|.
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~G~ 89 (101)
T cd02994 61 PGLSGRFFVTALPTIYHAKDGVFRRYQGP 89 (101)
T ss_pred HhHHHHcCCcccCEEEEeCCCCEEEecCC
Confidence 34678999999999999988876556554
No 236
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.06 E-value=0.82 Score=37.41 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=80.7
Q ss_pred CccccCCCccccceecCceEEEeCCCccccccccceeeeecCCCCCCCccceeecCChhHHHHHHHHhhcCCCcEEEEEe
Q 029703 26 QPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM 105 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~ 105 (189)
+.+|+...++|-+|+.|....|+|.+.... .++....-+..| +..|++..+++.+-. -...+-||-|+
T Consensus 106 KKLgv~E~~SiyVfkd~~~IEydG~~saDt-----LVeFl~dl~edP----VeiIn~~~e~~~Fe~---ied~~klIGyF 173 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDGEVIEYDGERSADT-----LVEFLLDLLEDP----VEIINNKHELKAFER---IEDDIKLIGYF 173 (383)
T ss_dssp HHHT--STTEEEEEETTEEEEE-S--SHHH-----HHHHHHHHHSSS----EEEE-SHHHHHHHHH-----SS-EEEEE-
T ss_pred HhcCccccCcEEEEECCcEEEecCccCHHH-----HHHHHHHhcccc----hhhhcChhhhhhhhh---cccceeEEEEe
Confidence 566888899999999999999999865522 122222222333 445677777766653 24456667666
Q ss_pred cCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe--CCeEEEEEeCCCcchhhHHHHHH
Q 029703 106 ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK--DGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 106 a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~--~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
.+.-+. -...++++|+.+.+-+.|+.+ -.+ .+|++++.. .=.+-+|. -.+++.--....+. ++|.+
T Consensus 174 k~~~s~---~yk~FeeAAe~F~p~IkFfAt---fd~-~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e----~e~~~ 241 (383)
T PF01216_consen 174 KSEDSE---HYKEFEEAAEHFQPYIKFFAT---FDK-KVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE----EELVE 241 (383)
T ss_dssp SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SH-HHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H----HHHHH
T ss_pred CCCCcH---HHHHHHHHHHhhcCceeEEEE---ecc-hhhhhcCcc-ccceeeeccccCCCccCCCCCCCH----HHHHH
Confidence 664332 345778889999888988764 234 389999986 66777775 34444332223344 89999
Q ss_pred HHHhh
Q 029703 184 MIKKF 188 (189)
Q Consensus 184 ~i~~~ 188 (189)
||+++
T Consensus 242 fi~~h 246 (383)
T PF01216_consen 242 FIEEH 246 (383)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 237
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.00 E-value=1.2 Score=31.36 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDG 162 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G 162 (189)
.+.+++++..+.+-+-++++.=.-.. .-+.....+.++..+- +. .++.-+|. +-++|+|+.+|++++.+++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~-~~-----~~v~IdP~-lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDG-GK-----SGVQIDPQ-WFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcC-CC-----CcEEEChH-HHhhcCceEcCEEEEECCC
Confidence 56788888766455555555444433 1123333333333322 11 22223464 8999999999999999876
Q ss_pred e-----------EEEEEeCCCcc
Q 029703 163 E-----------MKSEVIGGHKA 174 (189)
Q Consensus 163 ~-----------~~~~~~g~~~~ 174 (189)
. ...+..|..+.
T Consensus 82 ~~c~~~~~~~~~~~d~v~Gdvsl 104 (130)
T TIGR02742 82 LACLPEQPCPESDYDVVYGNVSL 104 (130)
T ss_pred CcccccCCCCCCCeeEEEecccH
Confidence 4 34577777765
No 238
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=92.93 E-value=1.2 Score=30.49 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD 161 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~ 161 (189)
.+.+++++..+...+-++++.=+-+. .=+.....+.++..+-... .++.-+|. +-++|+|+.+|++++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~-----~~v~IdP~-~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC-----PGVQIDPR-LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC-----cceeEChh-HHhhCCceEcCEEEEEcC
Confidence 56788888766344333333333333 2223333344444333211 22233464 899999999999999877
No 239
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.84 E-value=0.038 Score=36.77 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=23.2
Q ss_pred cccCCccccCCCccccceecC-ce-EEEeCCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNS-AF-FWVDTAS 51 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~-~~-~~~~g~~ 51 (189)
...|+.|+|+++||+.+|++| .. ..|.|..
T Consensus 63 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 63 ESLCQQANIRAYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred HHHHHHcCCCcccEEEEEcCCCCCceEccCCC
Confidence 457889999999999999987 33 5565543
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.55 E-value=1.9 Score=30.63 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.3
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC----CCCeEEEEeCCeEEEEEeCCCc
Q 029703 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----KMPTIQIWKDGEMKSEVIGGHK 173 (189)
Q Consensus 98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~----~~Pt~~~~~~G~~~~~~~g~~~ 173 (189)
..-++.+++|.|+=|......++. ..+.+-.+..++.. .+.++++|. +-=|.++ +|..+ .|-..
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~-alK~~~gIp~e~~SCHT~VI--~Gy~v---EGHVP 92 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFL-ALKRRLGIPYEMQSCHTAVI--NGYYV---EGHVP 92 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHH-HHHHhcCCChhhccccEEEE--cCEEE---eccCC
Confidence 345677899999999987766652 35666666666655 488888875 5555554 88765 56666
Q ss_pred chhhHHHHHHHHHh
Q 029703 174 AWLVIEEVREMIKK 187 (189)
Q Consensus 174 ~~~~~~~l~~~i~~ 187 (189)
. +.+..++++
T Consensus 93 a----~aI~~ll~~ 102 (149)
T COG3019 93 A----EAIARLLAE 102 (149)
T ss_pred H----HHHHHHHhC
Confidence 6 667776653
No 241
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.49 E-value=0.11 Score=34.96 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEe-CCeEEEEEeCCC-cchh
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWK-DGEMKSEVIGGH-KAWL 176 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~-~~~~ 176 (189)
..|+.++|+.|++....|++ .++.+-.+|+.+.+ .++....+-.+.+.--+++ .|...... |.. ....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l-~~~~~~~l 74 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKL-GLADKDEL 74 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHc-CCccccCC
Confidence 46889999999998766654 24566677765532 2344444444443333443 44332221 111 1122
Q ss_pred hHHHHHHHHHh
Q 029703 177 VIEEVREMIKK 187 (189)
Q Consensus 177 ~~~~l~~~i~~ 187 (189)
..+++.++|.+
T Consensus 75 s~~e~~~~l~~ 85 (105)
T cd02977 75 SDEEALELMAE 85 (105)
T ss_pred CHHHHHHHHHh
Confidence 23666666654
No 242
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=92.27 E-value=0.045 Score=36.59 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=20.1
Q ss_pred ccccCCccccCCCccccceecCc
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSA 43 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~ 43 (189)
....|+.|+|+++||+.+|++|+
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeCCC
Confidence 45678899999999999999885
No 243
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.23 E-value=0.053 Score=35.76 Aligned_cols=30 Identities=7% Similarity=-0.057 Sum_probs=23.2
Q ss_pred cccCCccccCCCccccceecC--ceEEEeCCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNS--AFFWVDTAS 51 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~--~~~~~~g~~ 51 (189)
...|+.|+|+++||+.++++| ....|.|..
T Consensus 62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~ 93 (103)
T cd03001 62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGR 93 (103)
T ss_pred HHHHHHCCCCccCEEEEECCCCcceeecCCCC
Confidence 457789999999999999987 335566553
No 244
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.06 E-value=0.61 Score=30.36 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=54.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
++=.|.+..-+-++.....+.++-+++ .+.+.+-.||+.++++ ++..++|-++||++=.. =.+..++.|..+.
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtLIK~~-P~P~rriiGdls~ 78 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTLSKIL-PPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHHhhcC-CCCcceeeccccc
Confidence 444455666677777777777776654 5678888999999996 99999999999976443 3356788887653
No 245
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.00 E-value=4.3 Score=30.89 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=57.5
Q ss_pred cCCCcEEEEEecCCC-hhhhhhhHHHHHHHHHhC----CCeEEEE--EEccCCh--------------------------
Q 029703 95 ELSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD----TKLKFYY--VDVNKVS-------------------------- 141 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC-~~C~~~~~~l~~~~~~~~----~~v~~~~--vd~~~~~-------------------------- 141 (189)
-.+++++|+|.=+.| .-|-.+...+..+.+++. .++.++. +|-+...
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~ 144 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI 144 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence 368999999965556 457777777777776663 3444444 4443321
Q ss_pred HHHHHhCCCCC---------------CCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 142 KDLVKRGNISK---------------MPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 142 ~~l~~~~~i~~---------------~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+++++.|+|.. ...++++. +|+....+.+...++.+.+.|+..++
T Consensus 145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 12566666552 23344554 89999998888888566666665554
No 246
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.98 E-value=0.069 Score=35.02 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=24.3
Q ss_pred cccCCccccCCCccccceecCce-EEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
..+|..|+|.++||+.++++|.. ..+.|.
T Consensus 61 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 61 KELCKKYGVKSVPTIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp HHHHHHTTCSSSSEEEEEETTEEEEEEESS
T ss_pred chhhhccCCCCCCEEEEEECCcEEEEEECC
Confidence 56789999999999999999877 466665
No 247
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.63 E-value=0.69 Score=31.05 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
+..++=.|.+..-+-.+.....+.++-+++ .+.+.+=.||+.++++ ++..++|-++||++=.. =.++.|+.|..+.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTLIK~~-P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTLAKIL-PPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHHhhcC-CCCcceeeccccc
Confidence 345555666777777777777777776654 5678888999999996 99999999999976433 3356788887653
No 248
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.47 E-value=0.15 Score=34.81 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=34.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh---HHHHHhCCCCCCCeEEEEe-CCe
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNISKMPTIQIWK-DGE 163 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~~l~~~~~i~~~Pt~~~~~-~G~ 163 (189)
..|+.++|+.|++....|++ .++.|-.+|+...+ .++..-++..+.|.--+++ .|.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence 45789999999998766654 25667777776543 1244434444556555554 443
No 249
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.23 E-value=0.8 Score=35.85 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=39.1
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEe
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~ 160 (189)
..+|+.+++..+.||+.|...+=.|-.+..++ +++.+.....+... .-..+||++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~~~d-------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSDPYD-------NYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecCccc-------CCCCCCeEEEec
Confidence 67999999999999999988765555555666 55633333222211 125789998864
No 250
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.20 E-value=0.1 Score=34.43 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=23.2
Q ss_pred ccccCCccccCCCccccceecCce-EEEeCC
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
....|..++|+++||+.++++|.. ..+.|.
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFENGKFVEKYEGE 94 (104)
T ss_pred cHHHHHhCCCccccEEEEEeCCCeeEEeCCC
Confidence 456778999999999999998864 444443
No 251
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.15 E-value=0.96 Score=27.61 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=33.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
..|+.++|+.|++..-.++... -.+....+|......++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG----VSVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC----CccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4577899999999876664432 234455556554443466666778999774
No 252
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=90.89 E-value=0.15 Score=33.50 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=23.5
Q ss_pred cccCCccccCCCccccceecCce-EEEeCCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTAS 51 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~~ 51 (189)
...|+.|+|.++||+.++++|.. ..+.|..
T Consensus 63 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~ 93 (102)
T cd03005 63 RELCSEFQVRGYPTLLLFKDGEKVDKYKGTR 93 (102)
T ss_pred hhhHhhcCCCcCCEEEEEeCCCeeeEeeCCC
Confidence 35788999999999999998865 4465553
No 253
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=90.88 E-value=0.47 Score=28.94 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=35.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHhCCCCCCCeEEEEeCCe
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQIWKDGE 163 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~ 163 (189)
..|+.++|+.|++..-.+.... -.+....++... ...++.+......+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC----CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 3577889999999887776542 234445555422 2223666667789999864 3453
No 254
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=90.83 E-value=3.7 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCCcEEEEEecCCC-hhhhhhhHHHHHHHHHh---CCCeEEEEEEccC
Q 029703 96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEF---DTKLKFYYVDVNK 139 (189)
Q Consensus 96 ~~k~~vv~f~a~wC-~~C~~~~~~l~~~~~~~---~~~v~~~~vd~~~ 139 (189)
.+|+++|.|.=..| ..|-.+...+.++.+.+ +.++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 68999999977777 66877777777776665 2467777777764
No 255
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.82 Score=28.81 Aligned_cols=57 Identities=21% Similarity=0.417 Sum_probs=37.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---------------HHHHhCCCCCCCeEEEEeCCeEE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---------------DLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---------------~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
+.|+|..||.|..+...++.+ ++.+-.|++..... +-.+..|--++|.+++ .+|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 679999999998876666554 34444555543210 1245567779999876 577664
No 256
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.76 E-value=0.12 Score=36.49 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=21.2
Q ss_pred ccccCCccccCCCccccceecCceE
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
-..+...|+|.++||+.+|++|...
T Consensus 80 ~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred CHHHHHHcCCccCCEEEEEECCEEE
Confidence 3456689999999999999999874
No 257
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=90.61 E-value=0.086 Score=36.05 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=19.9
Q ss_pred ccCCccccCCCccccceecCceE
Q 029703 23 QFQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
.....|+|.+.||+.+|++|...
T Consensus 74 ~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 74 ALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred HHHHHcCCCcCCEEEEEECCEEE
Confidence 45588999999999999999774
No 258
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=90.59 E-value=0.11 Score=34.78 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=21.3
Q ss_pred ccCCccccCCCccccceecCce-EEEeC
Q 029703 23 QFQQPWSSGSSSCLLLQKNSAF-FWVDT 49 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~~-~~~~g 49 (189)
.+++.|+|.++||+.+|++|.. ..+.|
T Consensus 62 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G 89 (103)
T cd02985 62 ELCRREKIIEVPHFLFYKDGEKIHEEEG 89 (103)
T ss_pred HHHHHcCCCcCCEEEEEeCCeEEEEEeC
Confidence 4668899999999999998865 34444
No 259
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=90.52 E-value=0.15 Score=33.95 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=22.2
Q ss_pred cccCCccccCCCccccceecCceEEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~ 50 (189)
...|+.|+|+++||+.+++++....+.|.
T Consensus 62 ~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~ 90 (104)
T cd03000 62 SSIASEFGVRGYPTIKLLKGDLAYNYRGP 90 (104)
T ss_pred HhHHhhcCCccccEEEEEcCCCceeecCC
Confidence 45678899999999999987655555543
No 260
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.27 E-value=0.59 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=28.2
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEc
Q 029703 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (189)
Q Consensus 98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~ 137 (189)
|.++|.|.-|.|+-|+.....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999999997776665 3444444
No 261
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=90.04 E-value=0.14 Score=33.42 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=22.2
Q ss_pred cccCCccccCCCccccceecCce-EEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
..+|+.|+|.++||+.++++|.. ..+.|.
T Consensus 56 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 85 (96)
T cd02956 56 PQIAQQFGVQALPTVYLFAAGQPVDGFQGA 85 (96)
T ss_pred HHHHHHcCCCCCCEEEEEeCCEEeeeecCC
Confidence 45778999999999999998765 234443
No 262
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=89.88 E-value=2.6 Score=26.25 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=30.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~ 158 (189)
..++.++|+.|++..-.+.+. ++.+-.++++.. ..++.+.-+-..+|+++.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 456678999999877666543 233333444432 223444456678999854
No 263
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=89.81 E-value=0.13 Score=33.58 Aligned_cols=29 Identities=0% Similarity=-0.034 Sum_probs=23.2
Q ss_pred cccCCccccCCCccccceecCc-eEEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSA-FFWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~-~~~~~g~ 50 (189)
...|+.|+|.++|++.++++|. ...|.|.
T Consensus 59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 4567899999999999999887 4556554
No 264
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=89.71 E-value=3.3 Score=25.55 Aligned_cols=52 Identities=21% Similarity=0.384 Sum_probs=30.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC-hHHHHHhCCCCCCCeEEEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SKDLVKRGNISKMPTIQIW 159 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~l~~~~~i~~~Pt~~~~ 159 (189)
+..|+.+.|+.|++..-.+.+. .+.+-.++++.. ...+ +.-+...+|++..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 3467789999999987665543 233333343322 1123 33466789998753
No 265
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=89.63 E-value=0.15 Score=39.30 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=24.4
Q ss_pred cccCCccccCCCccccceecCceEEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~ 50 (189)
...|+.|+|++|||+.+|++|....+.++
T Consensus 96 ~~l~~~~~I~~~PTl~~f~~G~~v~~~~G 124 (224)
T PTZ00443 96 LNLAKRFAIKGYPTLLLFDKGKMYQYEGG 124 (224)
T ss_pred HHHHHHcCCCcCCEEEEEECCEEEEeeCC
Confidence 45788999999999999999987766554
No 266
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.41 E-value=3.5 Score=25.45 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
.++.++|+.|++..-.++.. +-.+.+..++.......+.+...-..+|++. .+|..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~----~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK----GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH----TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCCcCCChHHHHHHHHHHHc----CCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 36789999999987655443 1245666666655544577778888999997 567653
No 267
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.40 E-value=0.098 Score=35.75 Aligned_cols=24 Identities=4% Similarity=-0.101 Sum_probs=20.5
Q ss_pred ccccCCccccCCCccccceecCce
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
....|+.|+|++|||+++|+++..
T Consensus 67 ~~~~~~~~~i~~~Pt~~lf~~~~~ 90 (114)
T cd02992 67 NVALCRDFGVTGYPTLRYFPPFSK 90 (114)
T ss_pred hHHHHHhCCCCCCCEEEEECCCCc
Confidence 356789999999999999998764
No 268
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.29 E-value=0.34 Score=34.09 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=23.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..|+.++|+.|++....|++ .++.+-.+|+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE------NQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH------cCCCeEEEEeeCC
Confidence 456889999999997765544 2455555665543
No 269
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.08 E-value=1.7 Score=25.51 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=34.9
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH-HHHHhCCCCCCCeEEEEeCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-DLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~-~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.|+.++|+.|++..-.+.... -.+....++...... .+.+..+-..+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 577889999998776665542 234445555443321 2455667789998764 4643
No 270
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.97 E-value=0.67 Score=31.25 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=24.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~ 141 (189)
..|+.|+|+.|++....|++ .++.+-.+|+.+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~------~~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA------RGVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCCeEEEecccCC
Confidence 46889999999998776654 25666667766553
No 271
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=88.78 E-value=0.19 Score=34.08 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.0
Q ss_pred cccCCccccCCCccccceecCceEEE
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWV 47 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~ 47 (189)
...|+.|+|+++||+.+|++|.....
T Consensus 69 ~~l~~~~~V~~~Pt~~i~~~g~~~~~ 94 (111)
T cd02963 69 RRLARKLGAHSVPAIVGIINGQVTFY 94 (111)
T ss_pred HHHHHHcCCccCCEEEEEECCEEEEE
Confidence 35678899999999999998866443
No 272
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.62 E-value=0.87 Score=35.07 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
.+++.||+++|||++ +|+ ..+.|..+.+.+.+.|++.+.
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 688899999999998 444 356899999555555555443
No 273
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=5.6 Score=28.84 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=29.7
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~ 139 (189)
-.+|+++|.=.|+-|+.--+ ...|+.+.++|++ .+.++..-|++
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccc
Confidence 36888888888999986542 3456667777743 46666666654
No 274
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=88.26 E-value=6.5 Score=27.03 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=50.8
Q ss_pred cEEEEEe-cCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCChH-----------HHHHhCCCCCCC-eEEEE-eCCe
Q 029703 99 PILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSK-----------DLVKRGNISKMP-TIQIW-KDGE 163 (189)
Q Consensus 99 ~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~~~-----------~l~~~~~i~~~P-t~~~~-~~G~ 163 (189)
-++|.|. ++.-+.-+.+...|.+....+. .++.++.+--+.... .+.++|++..-. +++++ ++|.
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc
Confidence 3444443 3344444444555555333442 356666653332221 488999976433 34444 7999
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 164 MKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 164 ~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+..++....+. ++|-+.|+.+
T Consensus 91 vK~r~~~p~~~----~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDP----EELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCH----HHHHHHHhCC
Confidence 98998888888 8888888754
No 275
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=87.71 E-value=2.8 Score=25.46 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=31.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.++.++|++|++..-.+....- .+....++...... ..+..+-..+|++.. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~-~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT-PIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH-HHHhcCCCccCEEEe-CCCeE
Confidence 4678899999987766654311 23333444332222 234445567998743 34543
No 276
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=87.70 E-value=0.19 Score=32.44 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.7
Q ss_pred cccCCccccCCCccccceecC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNS 42 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~ 42 (189)
..+|+.|+|+++||+.+++++
T Consensus 61 ~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 61 NDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHhCCCCCCCEEEEEcCC
Confidence 457899999999999999877
No 277
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=87.45 E-value=0.54 Score=32.13 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=24.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..|+.++|+.|++....|++. ++.+-.+|+...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467789999999987766552 456667776554
No 278
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=87.29 E-value=0.25 Score=32.43 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=19.6
Q ss_pred ccccCCccccCCCccccceecCc
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSA 43 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~ 43 (189)
....|+.++|+++||+.++++++
T Consensus 64 ~~~~~~~~~i~~~P~~~~~~~~~ 86 (105)
T cd02998 64 NKDLAKKYGVSGFPTLKFFPKGS 86 (105)
T ss_pred chhhHHhCCCCCcCEEEEEeCCC
Confidence 35678999999999999998773
No 279
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=1.2 Score=33.48 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHhCCCCCCCeEEEEeCCeEEEEEeC--CCcchhhHHHHHHHHHh
Q 029703 143 DLVKRGNISKMPTIQIWKDGEMKSEVIG--GHKAWLVIEEVREMIKK 187 (189)
Q Consensus 143 ~l~~~~~i~~~Pt~~~~~~G~~~~~~~g--~~~~~~~~~~l~~~i~~ 187 (189)
.+++++++.++||+++-+||+.-.--.| ..+. +.+..++.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~----~~~~arl~~ 207 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSP----DAWLARLAQ 207 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCc----HHHHHHHHH
Confidence 3788999999999999999987554445 3444 445555443
No 280
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=87.19 E-value=0.28 Score=33.04 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=21.4
Q ss_pred ccCC-ccccCCCccccceecCce--EEEeCC
Q 029703 23 QFQQ-PWSSGSSSCLLLQKNSAF--FWVDTA 50 (189)
Q Consensus 23 ~~~~-~~~i~g~Ptl~~~~~~~~--~~~~g~ 50 (189)
.+|. .++|.+|||+.+|++++. ..|.|.
T Consensus 68 ~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 68 EFAKEELQLKSFPTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred hhHHhhcCCCcCCEEEEEcCCCCCceeccCC
Confidence 4565 589999999999988653 667664
No 281
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=86.76 E-value=0.38 Score=32.62 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.6
Q ss_pred ccCCccccCCCccccceecCce
Q 029703 23 QFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
..++.|+|.++||+.+|++|..
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNGEL 88 (113)
T ss_pred HHHHhcCCCcCCEEEEEECCEE
Confidence 5678999999999999999866
No 282
>PTZ00051 thioredoxin; Provisional
Probab=86.44 E-value=0.27 Score=32.10 Aligned_cols=29 Identities=14% Similarity=-0.042 Sum_probs=22.4
Q ss_pred cccCCccccCCCccccceecCce-EEEeCC
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
...+..|+|.++||+.++++|.. ..+.|.
T Consensus 61 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 61 SEVAEKENITSMPTFKVFKNGSVVDTLLGA 90 (98)
T ss_pred HHHHHHCCCceeeEEEEEeCCeEEEEEeCC
Confidence 45678899999999999998876 344443
No 283
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.26 E-value=1.3 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~ 141 (189)
+..|+.++|+.|++....|.+ .++.+-.+|+...+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~------~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE------HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH------cCCCcEEeeccCCh
Confidence 456789999999997766644 24666667765543
No 284
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=86.01 E-value=5 Score=25.78 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=34.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQI 158 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~ 158 (189)
+..++.+.|+.|++..-.+... +-.+.+..++.....+.+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK----NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4456788899999876555543 22455566665444333666667789999874
No 285
>PRK10996 thioredoxin 2; Provisional
Probab=85.92 E-value=0.34 Score=34.30 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=19.5
Q ss_pred cccCCccccCCCccccceecCce
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
...++.|+|.|+||+.+|++|..
T Consensus 96 ~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 96 RELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred HHHHHhcCCCccCEEEEEECCEE
Confidence 45678999999999999988765
No 286
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=85.86 E-value=0.37 Score=31.28 Aligned_cols=23 Identities=4% Similarity=0.239 Sum_probs=19.4
Q ss_pred cccCCccccCCCccccceecCce
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
...+..|+|.++||+.+|++|..
T Consensus 58 ~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 58 PEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred HHHHHhcCCccccEEEEEECCEE
Confidence 34678899999999999988765
No 287
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=85.19 E-value=0.35 Score=32.10 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.5
Q ss_pred ccCCccccCCCccccceecCceE
Q 029703 23 QFQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
..++.|+|+++||+.+|++|...
T Consensus 62 ~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 62 DTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred HHHHHcCCCcCcEEEEEECCEEE
Confidence 45689999999999999988763
No 288
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.07 E-value=1.8 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=26.2
Q ss_pred HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
.+.+.||.++||+++ +|+. .+.|..+. +.+.+.|
T Consensus 167 ~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~----~~~~~~i 200 (201)
T cd03024 167 RARQLGISGVPFFVF--NGKY--AVSGAQPP----EVFLQAL 200 (201)
T ss_pred HHHHCCCCcCCEEEE--CCeE--eecCCCCH----HHHHHHh
Confidence 677899999999988 7753 46888887 6666554
No 289
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=84.98 E-value=0.48 Score=32.55 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=21.1
Q ss_pred cccCCccccCCCccccceecCceEEE
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWV 47 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~ 47 (189)
..+.+.|+|++.||+.+|++|....-
T Consensus 58 ~~la~~~~V~~iPTf~~fk~G~~v~~ 83 (114)
T cd02954 58 PDFNKMYELYDPPTVMFFFRNKHMKI 83 (114)
T ss_pred HHHHHHcCCCCCCEEEEEECCEEEEE
Confidence 34558899999999999999977443
No 290
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=84.90 E-value=1.4 Score=27.00 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=35.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEEEeCCe
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQIWKDGE 163 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~ 163 (189)
..|+.++|+.|++..-.+++. +-.+....+|.... ..++.+......+|++.. +|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGF 60 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCE
Confidence 357889999999876666553 22455555654332 234666667789999953 454
No 291
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=84.29 E-value=2.7 Score=34.60 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=43.0
Q ss_pred Chhhhhhh----HHHHHHHHHhC---CCeEEEEEEccCC--hHHHHHhCCCCC-CCeEEEEeCCeEEEEEeCCCcchhhH
Q 029703 109 CRKCIYLK----PKLEKLAAEFD---TKLKFYYVDVNKV--SKDLVKRGNISK-MPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 109 C~~C~~~~----~~l~~~~~~~~---~~v~~~~vd~~~~--~~~l~~~~~i~~-~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
||.|..-. ....++-+.+. ..++++.+-|-.+ .+.-...+||.+ -+..++|.+|+.+.++.+..-.+.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 66665544 33344444442 2377787777422 222455677764 44777889999988887665443333
Q ss_pred HHHHH
Q 029703 179 EEVRE 183 (189)
Q Consensus 179 ~~l~~ 183 (189)
+++.+
T Consensus 351 ~~i~~ 355 (360)
T PRK00366 351 AEIEA 355 (360)
T ss_pred HHHHH
Confidence 33333
No 292
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.28 E-value=1.8 Score=29.65 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=25.3
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~ 141 (189)
..|+.++|+.|++....|++ .++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 35789999999998776665 35677777876654
No 293
>PHA02278 thioredoxin-like protein
Probab=84.26 E-value=0.45 Score=31.96 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.2
Q ss_pred cCCccccCCCccccceecCceE
Q 029703 24 FQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
..+.|+|.+.||+.+|++|...
T Consensus 64 l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 64 AVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred HHHHCCCccccEEEEEECCEEE
Confidence 5578999999999999998764
No 294
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=84.26 E-value=1.7 Score=32.06 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=25.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCe
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKL 130 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v 130 (189)
+.+|+.+.|+.|-...+.+.++.+++..++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 567889999999999999999999884333
No 295
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.05 E-value=11 Score=25.64 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHh--CCCeEEEEEEccCChH---HHHHhCCCC-CCCeEEEEe--CCe-EEE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSK---DLVKRGNIS-KMPTIQIWK--DGE-MKS 166 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~--~~~v~~~~vd~~~~~~---~l~~~~~i~-~~Pt~~~~~--~G~-~~~ 166 (189)
-+...++-|--+--+.-..|.+.+.++|+.+ +++..|+-||-+..+- ---+.|+|. .-|.+=+.. +.+ .-.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 3577888888888888899999999999997 4689999999999873 123445654 358887774 222 222
Q ss_pred EEeCC---CcchhhHHHHHHHHHhhC
Q 029703 167 EVIGG---HKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 167 ~~~g~---~~~~~~~~~l~~~i~~~l 189 (189)
+..+. .+. ++|.+||+..|
T Consensus 99 ~m~~~~d~~t~----~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTA----EELEDWIEDVL 120 (120)
T ss_pred ecccccccCcH----HHHHHHHHhhC
Confidence 33333 344 89999998764
No 296
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=83.83 E-value=0.69 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.5
Q ss_pred cccCCccccCCCccccceecCce
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
...+..|++.++||+.++++|..
T Consensus 53 ~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 53 PELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred hhHHHhcCcccccEEEEEECCEE
Confidence 34678899999999999998864
No 297
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=83.74 E-value=0.67 Score=30.30 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=21.3
Q ss_pred ccCCccccCCCccccceecCc---eEEEeCC
Q 029703 23 QFQQPWSSGSSSCLLLQKNSA---FFWVDTA 50 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~---~~~~~g~ 50 (189)
..|..+++.++||+.+|++|. ...|.|.
T Consensus 64 ~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~ 94 (104)
T cd02995 64 DVPSEFVVDGFPTILFFPAGDKSNPIKYEGD 94 (104)
T ss_pred hhhhhccCCCCCEEEEEcCCCcCCceEccCC
Confidence 366788999999999999876 2445554
No 298
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=83.45 E-value=0.42 Score=30.80 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=40.9
Q ss_pred cCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChHHHHHhCCCCCCCeEE
Q 029703 106 ASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 106 a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
+..-+..+.....+..+.+.+ ...+.+-.||+.++++ ++..++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceEe
Confidence 444455566777778877764 5789999999999996 99999999999976
No 299
>PRK09381 trxA thioredoxin; Provisional
Probab=81.99 E-value=0.95 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=19.7
Q ss_pred cccCCccccCCCccccceecCceE
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
...++.|+|.++||+.++++|...
T Consensus 65 ~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 65 PGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred hhHHHhCCCCcCCEEEEEeCCeEE
Confidence 345678999999999999988763
No 300
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=81.82 E-value=0.77 Score=29.67 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.2
Q ss_pred cccCCccccCCCccccceecCce
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
...++.|+|.++||+.++++|..
T Consensus 58 ~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 58 PDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred HHHHHHcCCCcCCEEEEEeCCcE
Confidence 34678899999999999987765
No 301
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=81.57 E-value=2.6 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=24.2
Q ss_pred HHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 144 LVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
.+.++||.++||+++ +|+ .+.|.... +.|.+.|
T Consensus 159 ~a~~~gi~gvPtfvv--~g~---~~~G~~~l----~~~~~~l 191 (192)
T cd03022 159 EAIARGVFGVPTFVV--DGE---MFWGQDRL----DMLEEAL 191 (192)
T ss_pred HHHHcCCCcCCeEEE--CCe---eecccccH----HHHHHHh
Confidence 677899999999988 786 34687776 5555443
No 302
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=79.91 E-value=7.7 Score=27.00 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHh----CCCeEEEEEEccCChHH---------HHHhCCCCCCCeEEEEeCCeEEEEEeCC-CcchhhHHH
Q 029703 115 LKPKLEKLAAEF----DTKLKFYYVDVNKVSKD---------LVKRGNISKMPTIQIWKDGEMKSEVIGG-HKAWLVIEE 180 (189)
Q Consensus 115 ~~~~l~~~~~~~----~~~v~~~~vd~~~~~~~---------l~~~~~i~~~Pt~~~~~~G~~~~~~~g~-~~~~~~~~~ 180 (189)
..|.|.+++..+ +..+.+.+.|...++.. +.+.-|....|-+++ ||+++. .|. .+. ++
T Consensus 22 vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~--~G~YPt~----eE 93 (123)
T PF06953_consen 22 VDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK--TGRYPTN----EE 93 (123)
T ss_dssp --HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE--ESS---H----HH
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE--ecCCCCH----HH
Confidence 345555544433 25799999999988742 455668999998776 998764 333 333 77
Q ss_pred HHHHHH
Q 029703 181 VREMIK 186 (189)
Q Consensus 181 l~~~i~ 186 (189)
|.+|+.
T Consensus 94 l~~~~~ 99 (123)
T PF06953_consen 94 LAEWLG 99 (123)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 888764
No 303
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=79.41 E-value=14 Score=28.16 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=44.7
Q ss_pred CChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 108 wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.|+.|+.+.-.|. .+. ..+.+-.||...-++.+.+-..-...|.+.+ +|+.+ .+. ++++++|++
T Consensus 20 dcpf~qr~~m~L~---~k~-~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~~------tDs----~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKG-VPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKWV------TDS----DKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHH---HcC-CCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCcee------ccH----HHHHHHHHH
Confidence 4888888776665 222 3688899999998877777777788887665 55432 223 567777765
Q ss_pred h
Q 029703 188 F 188 (189)
Q Consensus 188 ~ 188 (189)
.
T Consensus 84 ~ 84 (221)
T KOG1422|consen 84 K 84 (221)
T ss_pred h
Confidence 4
No 304
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=78.73 E-value=4.4 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..|+.++|+.|++....|++ .++.+-.+|+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCC
Confidence 346778999999997655543 2566666676544
No 305
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.64 E-value=17 Score=24.35 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhcCCCcEEEEEec---CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCC-CCCCCeE-EE
Q 029703 84 DHLDQILLRAQELSQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN-ISKMPTI-QI 158 (189)
Q Consensus 84 ~~~~~~~~~a~~~~k~~vv~f~a---~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~-i~~~Pt~-~~ 158 (189)
+-.++.+ ++++.++.+=.+ |-|+.+.+....|. .. +-+.|..+|+-.+++ +.+... ...+||+ .+
T Consensus 6 ~~I~~~i----~~n~VvLFMKGtp~~P~CGFS~~~vqiL~----~~-g~v~~~~vnVL~d~e-iR~~lk~~s~WPT~PQL 75 (105)
T COG0278 6 DRIQKQI----KENPVVLFMKGTPEFPQCGFSAQAVQILS----AC-GVVDFAYVDVLQDPE-IRQGLKEYSNWPTFPQL 75 (105)
T ss_pred HHHHHHh----hcCceEEEecCCCCCCCCCccHHHHHHHH----Hc-CCcceeEEeeccCHH-HHhccHhhcCCCCCcee
Confidence 3445555 344443333344 56666665544443 33 238899999988874 666553 2355554 24
Q ss_pred EeCCeEE
Q 029703 159 WKDGEMK 165 (189)
Q Consensus 159 ~~~G~~~ 165 (189)
|-+|+.+
T Consensus 76 yi~GEfv 82 (105)
T COG0278 76 YVNGEFV 82 (105)
T ss_pred eECCEEe
Confidence 5588764
No 306
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.25 E-value=5.2 Score=24.11 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=34.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
..|+.+.|+.|++..-.+... +-.+....+|... ....+.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 357789999999876666543 2234555555432 1223555555678999864 5643
No 307
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=77.90 E-value=1.1 Score=38.44 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=20.2
Q ss_pred CCccccCCCccccceecCce--EEEeC
Q 029703 25 QQPWSSGSSSCLLLQKNSAF--FWVDT 49 (189)
Q Consensus 25 ~~~~~i~g~Ptl~~~~~~~~--~~~~g 49 (189)
++.|+|.+|||+++|++|.. ..|.+
T Consensus 421 ~~~~~I~~~PTii~Fk~g~~~~~~Y~~ 447 (463)
T TIGR00424 421 KQELQLGSFPTILFFPKHSSRPIKYPS 447 (463)
T ss_pred HHHcCCCccceEEEEECCCCCceeCCC
Confidence 46899999999999998753 56654
No 308
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=76.85 E-value=7.2 Score=31.91 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=45.4
Q ss_pred ChhhhhhhHHH----HHHHHHh---CCCeEEEEEEccCC--hHHHHHhCCCCC--CCeEEEEeCCeEEEEEeCCCcchhh
Q 029703 109 CRKCIYLKPKL----EKLAAEF---DTKLKFYYVDVNKV--SKDLVKRGNISK--MPTIQIWKDGEMKSEVIGGHKAWLV 177 (189)
Q Consensus 109 C~~C~~~~~~l----~~~~~~~---~~~v~~~~vd~~~~--~~~l~~~~~i~~--~Pt~~~~~~G~~~~~~~g~~~~~~~ 177 (189)
||.|-+..-.+ .++.+++ +..+.+..+-|--+ .+..-..+||.+ -|...+|.+|+.+.+..+..-.
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~--- 340 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIV--- 340 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHH---
Confidence 88886655333 3333333 23466666666544 222344567664 6899999999999988777666
Q ss_pred HHHHHHHHHh
Q 029703 178 IEEVREMIKK 187 (189)
Q Consensus 178 ~~~l~~~i~~ 187 (189)
++|...+++
T Consensus 341 -eel~~~i~~ 349 (361)
T COG0821 341 -EELEALIEA 349 (361)
T ss_pred -HHHHHHHHH
Confidence 555554443
No 309
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=76.82 E-value=31 Score=26.30 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=25.3
Q ss_pred ChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 140 VSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 140 ~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
+|. +-++|+|+.+|++++.... ...++.|..+.
T Consensus 151 DP~-lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl 183 (212)
T PRK13730 151 DPT-LFSQYGIRSVPALVVFCSQ-GYDIIRGNLRV 183 (212)
T ss_pred CHH-HHHhcCCccccEEEEEcCC-CCCEEEecccH
Confidence 354 8999999999999998543 34677887764
No 310
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.69 E-value=17 Score=28.03 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=37.3
Q ss_pred CCCcEEEEE----ecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCC-CCCCCeE-EEEeCCeE
Q 029703 96 LSQPILIDW----MASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN-ISKMPTI-QIWKDGEM 164 (189)
Q Consensus 96 ~~k~~vv~f----~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~-i~~~Pt~-~~~~~G~~ 164 (189)
+.++++++- -.|-||..+++...++. + ++.+...|+-...+ +.+..+ ...+||+ .+|-+|+.
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~----~--nV~~~~fdIL~Dee-lRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQS----H--NVNYTIFDVLTDEE-LRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHH----c--CCCeeEEeccCCHH-HHHHhhhhcCCCCccceeECCEe
Confidence 455666643 24678877776665544 3 46688889888764 555443 2345554 24558875
No 311
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=75.25 E-value=0.74 Score=30.46 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=16.8
Q ss_pred cccCCccccCCCccccceec
Q 029703 22 QQFQQPWSSGSSSCLLLQKN 41 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~ 41 (189)
...++.|+|.++||+.+|++
T Consensus 62 ~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 62 TALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHcCCCCCCEEEEECC
Confidence 34567899999999999984
No 312
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=73.85 E-value=1.4 Score=28.69 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=18.7
Q ss_pred cccCCccccCCCccccceecCce
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
..+...++|.++||+.++++|..
T Consensus 57 ~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 57 QEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred HHHHHHCCCeeccEEEEEECCeE
Confidence 34557889999999999988755
No 313
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=20 Score=26.30 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEccC
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~ 139 (189)
.++.++|.=-|+.|+.-..-...|..+.++|++ .+.++..-|++
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 477777766788888777666778888887743 45666555543
No 314
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.50 E-value=2.4 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.8
Q ss_pred cCCccccCCCccccceecCceE
Q 029703 24 FQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
..+.|+|.+.||+.+|++|...
T Consensus 67 l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 67 LVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHCCCccCCEEEEEECCEEE
Confidence 4478999999999999999763
No 315
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.51 E-value=1.7 Score=29.33 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=20.6
Q ss_pred ccccCCccccCCCccccceecCce
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
-+..++.|+|+..||+.|+++|..
T Consensus 63 ~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 63 LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred CHhHHHhcCceEeeEEEEEECCEE
Confidence 355679999999999999998865
No 316
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=72.49 E-value=1.3 Score=31.97 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=18.1
Q ss_pred ccCCccccCC------CccccceecCceE
Q 029703 23 QFQQPWSSGS------SSCLLLQKNSAFF 45 (189)
Q Consensus 23 ~~~~~~~i~g------~Ptl~~~~~~~~~ 45 (189)
..++.|+|.+ +||+.+|++|...
T Consensus 93 ~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 93 NVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred HHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 4556677766 9999999998773
No 317
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=71.87 E-value=4.7 Score=33.20 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=43.4
Q ss_pred ChhhhhhhHHHHHHHHHh-------CCCeEEEEEEccCCh-HH-HHHhCCCC-CCC-eEEEEeCCeEEEEE-eCCCcchh
Q 029703 109 CRKCIYLKPKLEKLAAEF-------DTKLKFYYVDVNKVS-KD-LVKRGNIS-KMP-TIQIWKDGEMKSEV-IGGHKAWL 176 (189)
Q Consensus 109 C~~C~~~~~~l~~~~~~~-------~~~v~~~~vd~~~~~-~~-l~~~~~i~-~~P-t~~~~~~G~~~~~~-~g~~~~~~ 176 (189)
||.|-+..-.+++++++. +..++++-+-|--+. .+ --..||+. +-| ...+|++|+.+.+. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~v-- 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIV-- 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHH--
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHH--
Confidence 777765554444444433 346889999987763 21 12336666 444 58888999999888 554444
Q ss_pred hHHHHHHHHHhh
Q 029703 177 VIEEVREMIKKF 188 (189)
Q Consensus 177 ~~~~l~~~i~~~ 188 (189)
+.|.+.|+++
T Consensus 349 --d~L~~~I~~~ 358 (359)
T PF04551_consen 349 --DELIELIEEH 358 (359)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHhh
Confidence 7787777765
No 318
>PLN02309 5'-adenylylsulfate reductase
Probab=70.97 E-value=2.4 Score=36.29 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.5
Q ss_pred cccCC-ccccCCCccccceecCce--EEEeCC
Q 029703 22 QQFQQ-PWSSGSSSCLLLQKNSAF--FWVDTA 50 (189)
Q Consensus 22 ~~~~~-~~~i~g~Ptl~~~~~~~~--~~~~g~ 50 (189)
...|. .|+|.+|||+++|++|.. ..|.|+
T Consensus 411 ~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~ 442 (457)
T PLN02309 411 KEFAKQELQLGSFPTILLFPKNSSRPIKYPSE 442 (457)
T ss_pred hHHHHhhCCCceeeEEEEEeCCCCCeeecCCC
Confidence 34564 599999999999997753 456543
No 319
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=69.74 E-value=47 Score=25.24 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-----------------HHHHHhCCCCC--CCeEEEEeC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------------KDLVKRGNISK--MPTIQIWKD 161 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-----------------~~l~~~~~i~~--~Pt~~~~~~ 161 (189)
|=.|.|..|..|=.....|.+++++ +++..+..++|-.. ...+.+++..+ +|.+++ |
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 4468899999999999999999998 47777777766432 12455666665 566554 8
Q ss_pred CeEEEEEeCCCc
Q 029703 162 GEMKSEVIGGHK 173 (189)
Q Consensus 162 G~~~~~~~g~~~ 173 (189)
|.. ...|...
T Consensus 78 G~~--~~~g~~~ 87 (202)
T PF06764_consen 78 GRE--HRVGSDR 87 (202)
T ss_dssp TTE--EEETT-H
T ss_pred Cee--eeeccCH
Confidence 975 3455543
No 320
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.68 E-value=10 Score=27.81 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.3
Q ss_pred HHHhCCCCCCCeEEEEeCCe
Q 029703 144 LVKRGNISKMPTIQIWKDGE 163 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~~G~ 163 (189)
.+.++||.++||+++..++.
T Consensus 161 ~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 161 LARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHcCCCccCEEEEEeCCe
Confidence 67889999999999997665
No 321
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=67.25 E-value=38 Score=25.34 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=41.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++...+-.|+.++|+.|++..-.+++. +-.+....+|....+.++.+..-...+|++. .+|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEK----GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHC----CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 445556666678899999887655543 2346666777655443466666678999986 366543
No 322
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=66.79 E-value=27 Score=21.38 Aligned_cols=57 Identities=5% Similarity=0.060 Sum_probs=35.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
..|+.+.|+.|++..-.+.+. +-.+.+..+|.... +.++.+.-.-..+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 457788899897776444433 33456666665321 22366666778999985 46754
No 323
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.38 E-value=12 Score=25.56 Aligned_cols=52 Identities=13% Similarity=0.334 Sum_probs=37.4
Q ss_pred CChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCC--CCCCCeEEEEe
Q 029703 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN--ISKMPTIQIWK 160 (189)
Q Consensus 108 wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~--i~~~Pt~~~~~ 160 (189)
.|++|..++-.|...-. +...+.+.+|+...-..++....| =++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChh-hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 39999998877654433 346788999998887665666655 37999988753
No 324
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=66.05 E-value=3.2 Score=30.68 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=19.5
Q ss_pred ccCCccccCCCccccceecCceE
Q 029703 23 QFQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
..+..|+|.+.||+.+|++|...
T Consensus 126 ~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 126 GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred hhHHhCCCCCCCEEEEEECCEEE
Confidence 35688999999999999998763
No 325
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=65.97 E-value=7.5 Score=27.75 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=20.2
Q ss_pred cccccCCccccCCCcccc-ceecCc-eEEE
Q 029703 20 GKQQFQQPWSSGSSSCLL-LQKNSA-FFWV 47 (189)
Q Consensus 20 ~~~~~~~~~~i~g~Ptl~-~~~~~~-~~~~ 47 (189)
.-+.+.+.|+|++.||+. ||++|. ..++
T Consensus 65 e~~dla~~y~I~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 65 EVPDFNTMYELYDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred CCHHHHHHcCccCCCcEEEEEECCeEEEEE
Confidence 334566899999887777 888886 3444
No 326
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=65.83 E-value=13 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.419 Sum_probs=38.0
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC----CCeEEEEEEccCCh
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKVS 141 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~~~~~ 141 (189)
..+.++||-+-..+|..|......|+.|..++. .+|.|+.||-....
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~ 74 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEH 74 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcc
Confidence 468899999999999999998888888877662 47889999866543
No 327
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=65.03 E-value=2.7 Score=29.81 Aligned_cols=28 Identities=0% Similarity=-0.217 Sum_probs=20.4
Q ss_pred ccCCccccCCCcccccee-cCce-EEEeCC
Q 029703 23 QFQQPWSSGSSSCLLLQK-NSAF-FWVDTA 50 (189)
Q Consensus 23 ~~~~~~~i~g~Ptl~~~~-~~~~-~~~~g~ 50 (189)
..+..|+|.++||+.+|. +|.. ..+.|.
T Consensus 67 ~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 67 PEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 456789999999999996 5655 344443
No 328
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=65.00 E-value=31 Score=26.93 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred CcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh-----------------HHHHHhCCCCCCCeEEEEe
Q 029703 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------------KDLVKRGNISKMPTIQIWK 160 (189)
Q Consensus 98 k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-----------------~~l~~~~~i~~~Pt~~~~~ 160 (189)
..||=.|.+..|..|=.....|.+++.+ +++.-+..++|-.+ ....+.|+-++++|=..+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 4466677888999999888888888775 45655544444211 1367778999999888888
Q ss_pred CCeE
Q 029703 161 DGEM 164 (189)
Q Consensus 161 ~G~~ 164 (189)
||..
T Consensus 120 nGr~ 123 (261)
T COG5429 120 NGRV 123 (261)
T ss_pred echh
Confidence 8875
No 329
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=64.23 E-value=26 Score=22.89 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=35.1
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 107 ~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.+|+.|++.+-.|.+. +-.+.+..+|....++.+.+..-...+|+++ .+|..
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~ 71 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEV 71 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEE
Confidence 5799999877666543 2245667777666666677777788999765 35543
No 330
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.76 E-value=19 Score=21.68 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=34.1
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.|+.+.|+.|.+..-.+.... .+-.+....+|......++.+......+|++.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 466788999998765554421 122355555554333333556666788998753 35543
No 331
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.49 E-value=14 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=22.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..|+.|.|+.|++....|++ .++.+-.+|+...
T Consensus 2 i~iy~~p~C~~crkA~~~L~~------~gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA------AGHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH------cCCCcEEeehhcC
Confidence 346789999999987655543 2455666666543
No 332
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=63.12 E-value=24 Score=21.36 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=34.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
+..|+.+.|+.|++..-.+.... -.+....++... .+..+.+......+|++. .+|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 34555677999988776665532 234455555431 223466667788999875 35643
No 333
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.99 E-value=11 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCCh
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCR 110 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~ 110 (189)
-+.+...+. ..+|||++.|.+-|--
T Consensus 122 y~~lr~~I~---e~dkp~LilfGTGwGl 146 (190)
T COG4752 122 YSWLRNEIQ---ERDKPWLILFGTGWGL 146 (190)
T ss_pred HHHHHHHHh---hcCCcEEEEecCCCCC
Confidence 345555554 6799999999999943
No 334
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=61.33 E-value=35 Score=23.08 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred cCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-CCeEEEEEEccCC
Q 029703 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV 140 (189)
Q Consensus 95 ~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~vd~~~~ 140 (189)
-.+|+++|.=.|+.|+.-. ....|+++.++|+ ..+.++..-|++-
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 3578888888899999888 6779999999996 4688888888763
No 335
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=60.02 E-value=8.6 Score=26.07 Aligned_cols=20 Identities=5% Similarity=0.220 Sum_probs=16.7
Q ss_pred CCccccCCCccccceecCce
Q 029703 25 QQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 25 ~~~~~i~g~Ptl~~~~~~~~ 44 (189)
..-|++..+|+|.++++|..
T Consensus 75 ~~r~gv~~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 75 AARFGVRRWPALVFFRDGRY 94 (107)
T ss_dssp HHHHT-TSSSEEEEEETTEE
T ss_pred HHHhCCccCCeEEEEECCEE
Confidence 36789999999999999876
No 336
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.63 E-value=7.2 Score=29.26 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=17.4
Q ss_pred CccccCCCccccceecCce
Q 029703 26 QPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~ 44 (189)
..|+|++.||+.+|++|..
T Consensus 146 ~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 146 PNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred hhCCCCCCCEEEEEECCEE
Confidence 6799999999999999876
No 337
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.01 E-value=4.6 Score=29.07 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.0
Q ss_pred cCCccccCCCccccceecCceE
Q 029703 24 FQQPWSSGSSSCLLLQKNSAFF 45 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~~ 45 (189)
+-..|+|+.+||+.+|++|...
T Consensus 107 la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 107 LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred hHhhcceeeeeEEEEEECCEEe
Confidence 3378999999999999999765
No 338
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=56.20 E-value=99 Score=25.03 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEcc-CChH---HHHHhCCCCCCCeE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSK---DLVKRGNISKMPTI 156 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~-~~~~---~l~~~~~i~~~Pt~ 156 (189)
.+.+.|+.++..-.....-+.+.++.+.|..-..=.....+++++. ++.++--+-. .+.. ++|+.++ .||+
T Consensus 166 ~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v--D~miVVGg~~SsNT~kL~~i~~~~~---~~t~ 240 (298)
T PRK01045 166 LSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA--DLVIVVGSKNSSNSNRLREVAEEAG---APAY 240 (298)
T ss_pred CcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC--CEEEEECCCCCccHHHHHHHHHHHC---CCEE
Confidence 3466777776433233333444458999988777777788888764 3333322222 2221 2555554 4555
Q ss_pred EE----------EeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 157 QI----------WKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 157 ~~----------~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+ |++-+.++-..|..+++.+.+++...|++
T Consensus 241 ~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 241 LIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred EECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 44 23344677888999998888888888765
No 339
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=55.78 E-value=15 Score=30.13 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCChhhh-hhhHHHHHHHHHh---CCCeEEEEEEccCCh--HHHHHhCCCCCC--CeEEEEeCCeEEEEE
Q 029703 97 SQPILIDWMASWCRKCI-YLKPKLEKLAAEF---DTKLKFYYVDVNKVS--KDLVKRGNISKM--PTIQIWKDGEMKSEV 168 (189)
Q Consensus 97 ~k~~vv~f~a~wC~~C~-~~~~~l~~~~~~~---~~~v~~~~vd~~~~~--~~l~~~~~i~~~--Pt~~~~~~G~~~~~~ 168 (189)
..+-+| .=|.|+-|. .+.....++.+.+ +..++++.+-|--+. +.--..+||.+- -..++|++|+.+.++
T Consensus 255 ~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv 332 (346)
T TIGR00612 255 RGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ 332 (346)
T ss_pred CCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec
Confidence 344444 334454443 2223344443333 345788887776552 212334677643 467888999997776
Q ss_pred eCC
Q 029703 169 IGG 171 (189)
Q Consensus 169 ~g~ 171 (189)
.+.
T Consensus 333 ~~~ 335 (346)
T TIGR00612 333 PET 335 (346)
T ss_pred CHH
Confidence 553
No 340
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=18 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=42.5
Q ss_pred EEEEEccCChHHHHHhCCCCCCCeEEEEe--CCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 132 FYYVDVNKVSKDLVKRGNISKMPTIQIWK--DGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 132 ~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~--~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+..|..... .+..-|.+..+|.+.+++ -|+.+.+..|...+..+.+.+.+||+.
T Consensus 135 lV~~Dtseg~-~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 135 LVLDDTSEGQ-PFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEeeccCCCC-chhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 3344444444 488889999999888885 788889998888888888888888864
No 341
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.94 E-value=20 Score=23.90 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=36.2
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCC--CCCeEEEE-eCCeEEEEEeCC
Q 029703 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--KMPTIQIW-KDGEMKSEVIGG 171 (189)
Q Consensus 104 f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~--~~Pt~~~~-~~G~~~~~~~g~ 171 (189)
||..+|+-|......+..... .+.+.|+.+...... ++...++++ ..-+.+.+ .+|+ ..+.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 789999999998877766511 134555444222222 245666665 45555554 6776 234554
No 342
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=53.63 E-value=23 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=22.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
..|+.+.|..|++....|++ .++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~------~~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE------AGIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH------CCCCeEEEecccC
Confidence 46788999999997655543 2455666676544
No 343
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=53.39 E-value=23 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=23.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
..|+.+.|..|++....|++ .++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~------~~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED------KGIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH------CCCCeEEEeccCC
Confidence 46789999999998766654 2456666776554
No 344
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=52.57 E-value=24 Score=28.25 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC-hH---HHHHhCCCCCCCeE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-SK---DLVKRGNISKMPTI 156 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~-~~---~l~~~~~i~~~Pt~ 156 (189)
.+.+.|++++..-..........++.++|..-..=.....+++++. ++.++--+-... .. ++|++.+. |++
T Consensus 165 ~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v--D~miVIGg~~SsNT~kL~eia~~~~~---~t~ 239 (281)
T PF02401_consen 165 QSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV--DAMIVIGGKNSSNTRKLAEIAKEHGK---PTY 239 (281)
T ss_dssp S-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS--SEEEEES-TT-HHHHHHHHHHHHCTT---CEE
T ss_pred ccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC--CEEEEecCCCCccHHHHHHHHHHhCC---CEE
Confidence 3456777766433234455555688999988776666777776653 232222222221 11 36666654 565
Q ss_pred EE----------EeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 157 QI----------WKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 157 ~~----------~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+ |++.+.++-..|..+++.+.+++.+.|++
T Consensus 240 ~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 240 HIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp EESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred EeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 54 23345778889999998888988888875
No 345
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=52.25 E-value=23 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=18.2
Q ss_pred CCCeEEEEe-CCeEEEEEeC-CCcchhhHHHHHHHHHhh
Q 029703 152 KMPTIQIWK-DGEMKSEVIG-GHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 152 ~~Pt~~~~~-~G~~~~~~~g-~~~~~~~~~~l~~~i~~~ 188 (189)
.-|+++++. +|+.+.++.= ..+. +++.+||++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~----d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKT----DEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSH----CHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCH----HHHHHHHHHh
Confidence 458999997 8887665432 2233 7888888764
No 346
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.12 E-value=1.2e+02 Score=23.77 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCCcEEEEEecCCC-hh-hhhhhHHHHHHHHHh----CCCeEEEEEEccCChH---HHHHhCCCCC
Q 029703 96 LSQPILIDWMASWC-RK-CIYLKPKLEKLAAEF----DTKLKFYYVDVNKVSK---DLVKRGNISK 152 (189)
Q Consensus 96 ~~k~~vv~f~a~wC-~~-C~~~~~~l~~~~~~~----~~~v~~~~vd~~~~~~---~l~~~~~i~~ 152 (189)
=++++-|.+|.+-- ++ -....+.++++.++| ++++.+-.+|.+..++ +.+.++||+.
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 35677777665542 11 234444555555554 3489999999977664 2345588877
No 347
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=50.19 E-value=9.3 Score=26.22 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=24.2
Q ss_pred ccccccCCccccCCCccccceecCceEEEeCC
Q 029703 19 EGKQQFQQPWSSGSSSCLLLQKNSAFFWVDTA 50 (189)
Q Consensus 19 ~~~~~~~~~~~i~g~Ptl~~~~~~~~~~~~g~ 50 (189)
|+-+.+.+.|+|+..||..+|++|.-...+-+
T Consensus 55 Dev~dva~~y~I~amPtfvffkngkh~~~d~g 86 (114)
T cd02986 55 DKVPVYTQYFDISYIPSTIFFFNGQHMKVDYG 86 (114)
T ss_pred cccHHHHHhcCceeCcEEEEEECCcEEEEecC
Confidence 34455679999999999999999887444433
No 348
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.05 E-value=1.1e+02 Score=25.75 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcc
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
++..-+=.+++-.|.-|-..-..|.-++ -+++++.-..||.....++ ...-+|.++||++ -||+... +|..+.
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~ms-vlNp~I~H~~IdGa~Fq~E-vear~IMaVPtvf--lnGe~fg--~GRmtl 187 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMS-VLNPRIKHTAIDGALFQDE-VEARNIMAVPTVF--LNGEEFG--QGRMTL 187 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHH-hcCCCceeEEecchhhHhH-HHhccceecceEE--Ecchhhc--ccceeH
Confidence 5666777788888998876665555443 3468999999997765543 4555899999955 4887754 454444
No 349
>COG3411 Ferredoxin [Energy production and conversion]
Probab=49.60 E-value=33 Score=20.91 Aligned_cols=31 Identities=13% Similarity=0.366 Sum_probs=20.0
Q ss_pred CCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHHhhC
Q 029703 151 SKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 151 ~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~l 189 (189)
+-=|++++|.+|- ..+..+. +....+++++|
T Consensus 15 ~~gPvl~vYpegv----WY~~V~p----~~a~rIv~~hl 45 (64)
T COG3411 15 QDGPVLVVYPEGV----WYTRVDP----EDARRIVQSHL 45 (64)
T ss_pred ccCCEEEEecCCe----eEeccCH----HHHHHHHHHHH
Confidence 3459999999992 2344455 66666666653
No 350
>PRK10026 arsenate reductase; Provisional
Probab=49.54 E-value=17 Score=25.97 Aligned_cols=34 Identities=3% Similarity=-0.054 Sum_probs=22.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..++.|.|..|++....|++- ++.+-.+|+-..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeeeCC
Confidence 4467789999999987666542 455555665443
No 351
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.53 E-value=14 Score=27.01 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.2
Q ss_pred CccccCCCccccceecCce
Q 029703 26 QPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~ 44 (189)
+.++|++.||+++|++.+.
T Consensus 109 ~kf~vrstPtfvFfdk~Gk 127 (182)
T COG2143 109 QKFAVRSTPTFVFFDKTGK 127 (182)
T ss_pred HHhccccCceEEEEcCCCC
Confidence 7889999999999986543
No 352
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=45.98 E-value=1.1e+02 Score=24.24 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCcEEEEEecCCChh-hhhhhHHHHHHHHHhC--C--C--eEEEEEEccCCh-------------------------HH
Q 029703 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFD--T--K--LKFYYVDVNKVS-------------------------KD 143 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~--~--~--v~~~~vd~~~~~-------------------------~~ 143 (189)
.+|.++++|.=+.||. |=.....+.++.++.. . . -.|+.+|-.... ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4889999998888863 4333334444444332 1 1 146666653321 12
Q ss_pred HHHhCCCCCCC-------------eEEEE--e-CCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 144 LVKRGNISKMP-------------TIQIW--K-DGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 144 l~~~~~i~~~P-------------t~~~~--~-~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+|+.|.|.--+ ++++| . +|+.+..|--..+++.+.+.|..-+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 68888775322 34444 3 78877666556677445555544443
No 353
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.43 E-value=30 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHhCCCCCCCeEEEEe-CCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 144 LVKRGNISKMPTIQIWK-DGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 144 l~~~~~i~~~Pt~~~~~-~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
-+.+.||.++|++++=. +|+ -..+-|...- +.+.++|
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl----~~~~~~l 208 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGK-TEMFFGSDRF----EQVADFL 208 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCC-ccceecCCcH----HHHHHHh
Confidence 46778999999998843 242 2356677665 5555544
No 354
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=43.76 E-value=45 Score=23.08 Aligned_cols=57 Identities=16% Similarity=0.409 Sum_probs=37.8
Q ss_pred CCChhhhhhhHHHHHHHHHh----C---CCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEe
Q 029703 107 SWCRKCIYLKPKLEKLAAEF----D---TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVI 169 (189)
Q Consensus 107 ~wC~~C~~~~~~l~~~~~~~----~---~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~ 169 (189)
..|..|......+.++.+++ . =.+.+-++.++.. +++..+ -+.|++.+ ||+.+....
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~--~~~~~~--~~S~~I~i--nG~piE~~l 76 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE--EFARQP--LESPTIRI--NGRPIEDLL 76 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH--HHhhcc--cCCCeeeE--CCEehhHhh
Confidence 47999987776666665554 2 1466777777664 367777 67788765 888764333
No 355
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=43.38 E-value=60 Score=28.71 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhH-HH--HHHHHHhCCCeEEEEEEccCChH-------HHHHhCCCCC
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKP-KL--EKLAAEFDTKLKFYYVDVNKVSK-------DLVKRGNISK 152 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~-~l--~~~~~~~~~~v~~~~vd~~~~~~-------~l~~~~~i~~ 152 (189)
.+.|+++- +++||+++...-+.|..|..|.. .| ++.++.+..++.-++||-.+-++ -+....|-.+
T Consensus 102 qeaf~kar----~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GG 177 (786)
T KOG2244|consen 102 QEAFNKAR----AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGG 177 (786)
T ss_pred HHHHHHHH----hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCC
Confidence 46677766 79999999998888999998863 22 23455553444444444444442 1223356678
Q ss_pred CCeEEEEe
Q 029703 153 MPTIQIWK 160 (189)
Q Consensus 153 ~Pt~~~~~ 160 (189)
+|.-+++.
T Consensus 178 WPmsV~LT 185 (786)
T KOG2244|consen 178 WPMSVFLT 185 (786)
T ss_pred CceeEEeC
Confidence 88777763
No 356
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=43.00 E-value=31 Score=23.69 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.7
Q ss_pred EEEEecCCChhhhhhhHHHHH
Q 029703 101 LIDWMASWCRKCIYLKPKLEK 121 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~ 121 (189)
+..|+.|.|+.|++....|++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999998776654
No 357
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=42.77 E-value=1.8e+02 Score=23.39 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC-ChH---HHHHhCCCCCCCeE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSK---DLVKRGNISKMPTI 156 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~-~~~---~l~~~~~i~~~Pt~ 156 (189)
.+.+.|+.++..-.......-+.++.+.|..-+.=.....+++++. ++.++--+-+. +.. ++|+..+ .||+
T Consensus 164 ~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v--D~miVVGg~nSsNT~rL~ei~~~~~---~~t~ 238 (280)
T TIGR00216 164 LSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV--DLMIVIGGKNSSNTTRLYEIAEEHG---PPSY 238 (280)
T ss_pred CcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC--CEEEEECCCCCchHHHHHHHHHHhC---CCEE
Confidence 3466777766432122100233456999988877777888888775 33333222222 221 2566554 4666
Q ss_pred EE----------EeCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 157 QI----------WKDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 157 ~~----------~~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+ |++.+.++-..|..+++.+.+++...|++
T Consensus 239 ~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 239 LIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred EECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 54 23345678888999998888888888765
No 358
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=41.90 E-value=66 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 119 LEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 119 l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
+.++.++++..+-| +... .+.++|+|+.+|+++. .+|+.
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g-~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHG-KLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred HHHHHHHhCCceEE-----cCCc-hHhhccCceeeceEEE-ecCCE
Confidence 55666777444444 4445 4999999999999875 56654
No 359
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=41.32 E-value=76 Score=19.14 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=33.5
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.++.+-++.|++..-.++... -.+....+|.... ...+.+......+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g----~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNK----IPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcC----CCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 466777888887765554432 2355555654332 22356666778999986 35643
No 360
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=40.98 E-value=80 Score=18.91 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=31.9
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCC-CCCCeEEEEeCCe
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI-SKMPTIQIWKDGE 163 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i-~~~Pt~~~~~~G~ 163 (189)
.++.+.|+.|.+..-.+.... -.+....++....+..+.+.... ..+|++.. +|.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g----l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~ 58 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG----VPYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGK 58 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC----CCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCE
Confidence 456778999998776665432 23445555544333234443343 68998863 554
No 361
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=31 Score=26.18 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHh
Q 029703 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126 (189)
Q Consensus 100 ~vv~f~a~wC~~C~~~~~~l~~~~~~~ 126 (189)
.|.+.+.|-|+.|--..|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 477889999999999999999997764
No 362
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=37.81 E-value=40 Score=22.44 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=20.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHh-CCCeEEEEEEccCChH
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSK 142 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~-~~~v~~~~vd~~~~~~ 142 (189)
|.+|.+.+.....+...=+++..-+ ..++.|-.+|+...+.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHH
Confidence 3344344444445554444444443 2579999999998653
No 363
>PRK10853 putative reductase; Provisional
Probab=37.76 E-value=54 Score=22.45 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=23.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~ 140 (189)
+..|+.+.|..|++....|++ .++.+-.+|+-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~------~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA------QGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH------cCCCcEEeehccC
Confidence 346778999999998766654 2456666666544
No 364
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.19 E-value=1.6e+02 Score=22.74 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.6
Q ss_pred hhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCc
Q 029703 110 RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHK 173 (189)
Q Consensus 110 ~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~ 173 (189)
.||..++..++.++++++..+.++-=|++.. ..|. -.++-+++|+.+. +|...
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINfA-----S~Ys----D~IVAlK~G~vv~--~G~~~ 221 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINFA-----SCYS----DHIVALKNGKVVK--QGSPD 221 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccHH-----Hhhh----hheeeecCCEEEe--cCCHH
Confidence 7999999999999999965555555455433 2221 1266778998865 45443
No 365
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=37.18 E-value=66 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=20.5
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCCh
Q 029703 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (189)
Q Consensus 104 f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~ 141 (189)
|+.+.|..|++....|++ .++.+-.+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhCC
Confidence 567899999998777764 35677778887753
No 366
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=35.37 E-value=62 Score=24.73 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEE-eCCeEE
Q 029703 120 EKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIW-KDGEMK 165 (189)
Q Consensus 120 ~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~-~~G~~~ 165 (189)
.++.++++..+-| +... .|.++|+|+.+|+++.- .+|+..
T Consensus 157 ~~~~~~l~~~vYf-----dQ~G-~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQNG-VLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHhCCceEE-----cCcc-hHHHhcCCeeeceEEEEcCCCCEE
Confidence 5555666444443 4444 38999999999998862 567643
No 367
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=35.14 E-value=50 Score=21.05 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=19.4
Q ss_pred CCeEEEEeCCeEEEEEeCCCcchhhHHHHHH
Q 029703 153 MPTIQIWKDGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
-.|+.+|..|+.+ ..|..+.+...+.+..
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~ 77 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEK 77 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHH
Confidence 4688899999975 4788887443333333
No 368
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=33.69 E-value=15 Score=23.25 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=15.3
Q ss_pred CCccccCCC--ccccceecCce
Q 029703 25 QQPWSSGSS--SCLLLQKNSAF 44 (189)
Q Consensus 25 ~~~~~i~g~--Ptl~~~~~~~~ 44 (189)
|-++.|.|. |++.+|++|..
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~ 23 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAI 23 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEE
Confidence 566778888 78888888854
No 369
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=33.28 E-value=2.2e+02 Score=21.80 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEE
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSE 167 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~ 167 (189)
.++.-+..=|||+.|-...|...-..+.++ +-++.++.+.....++.-+..-+...+|...+..+|.....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E 73 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEE 73 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEeccc
Confidence 456666666899998666665555444443 35788888887766654455568889998888777766543
No 370
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=32.64 E-value=90 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=21.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC
Q 029703 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (189)
Q Consensus 101 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~ 139 (189)
+..++.|.|..|++....|++- ++.+-.+|+-+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~------gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS------GHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeccC
Confidence 4567789999999987666542 45555555544
No 371
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=32.42 E-value=71 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=23.1
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLK 131 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~ 131 (189)
.|+..-||.|-...+.++++..+++-.+.
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 46778899999999999999888743333
No 372
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=31.67 E-value=1.1e+02 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=21.6
Q ss_pred CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+++++|+-|+.+ .+|..+.+.....++.+++
T Consensus 54 ~a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 54 TAALIFRSGKVV--CTGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred ceEEEEecCcEE--EeccCcHHHHHHHHHHHHH
Confidence 367788899875 4899998555555555554
No 373
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=31.61 E-value=1.9e+02 Score=21.18 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHhCCCCCC-CeEEEE-eCCeEEEEEeCCCcchhhHHHHHHHHH
Q 029703 144 LVKRGNISKM-PTIQIW-KDGEMKSEVIGGHKAWLVIEEVREMIK 186 (189)
Q Consensus 144 l~~~~~i~~~-Pt~~~~-~~G~~~~~~~g~~~~~~~~~~l~~~i~ 186 (189)
+.+.++...- -+++++ ++|++.....|..+. +++.+.|.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~----~Ev~qVi~ 155 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSP----AEVQQVIA 155 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCH----HHHHHHHH
Confidence 5666666544 346666 599999999999998 66666553
No 374
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=30.52 E-value=26 Score=26.55 Aligned_cols=26 Identities=12% Similarity=-0.123 Sum_probs=21.6
Q ss_pred CCccccCCCccccceecCceEEEeCC
Q 029703 25 QQPWSSGSSSCLLLQKNSAFFWVDTA 50 (189)
Q Consensus 25 ~~~~~i~g~Ptl~~~~~~~~~~~~g~ 50 (189)
+...+|+-.|++.+|++|...+|--+
T Consensus 130 v~kL~IkVLP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 130 VTKLNIKVLPTVALFKNGKTVDYVVG 155 (211)
T ss_pred eeeeeeeEeeeEEEEEcCEEEEEEee
Confidence 57779999999999999998777433
No 375
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.18 E-value=2.4e+02 Score=21.83 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=41.8
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHH
Q 029703 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVRE 183 (189)
Q Consensus 104 f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~ 183 (189)
|.-..|..|..+...+++- -+-++++|. +....+ .++-+-+|-++|.+ |.+|+.+. -+.-++ +.++.
T Consensus 16 ~~HktC~ssy~Lf~~L~nk--gll~~Vkii--~a~~p~-f~~~~~~V~SvP~V--f~DGel~~--~dpVdp----~~ies 82 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENK--GLLGKVKII--DAELPP-FLAFEKGVISVPSV--FIDGELVY--ADPVDP----EEIES 82 (265)
T ss_pred EEecchHHHHHHHHHHHhc--CCCCCceEE--EcCCCh-HHHhhcceeecceE--EEcCeEEE--cCCCCH----HHHHH
Confidence 3456788888876666541 112566664 344444 46667789999995 45998753 444455 55555
Q ss_pred HHH
Q 029703 184 MIK 186 (189)
Q Consensus 184 ~i~ 186 (189)
.+.
T Consensus 83 ~~~ 85 (265)
T COG5494 83 ILS 85 (265)
T ss_pred HHc
Confidence 443
No 376
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=30.09 E-value=1.3e+02 Score=21.84 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEcc
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~ 138 (189)
+++-+.+.++++.++-|.-+.-.++.+|+.+.. ++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 456677778889989999999999999999966 6777666654
No 377
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=28.54 E-value=33 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=15.7
Q ss_pred cCCccccCCCccccceecCce
Q 029703 24 FQQPWSSGSSSCLLLQKNSAF 44 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~ 44 (189)
.+..|.+.+.|||.+|++|..
T Consensus 190 ~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 190 ASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp TTTTS-TTC-SEEEEEETTEE
T ss_pred cccCCcccCCCEEEEEECCEE
Confidence 346789999999999998854
No 378
>PRK15113 glutathione S-transferase; Provisional
Probab=27.73 E-value=1.6e+02 Score=21.96 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=37.2
Q ss_pred CcEEEEEecC--CChhhhhhhHHHHHHHHHhCCCeEEEEEEccCC---hHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 98 QPILIDWMAS--WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV---SKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 98 k~~vv~f~a~--wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
++.+..++.+ .|+.|++..-.+.+. +-.+.+..+|.... ..++.+..-...+|++. .+|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~----gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~--~~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEK----GLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ--HDDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHc----CCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE--ECCEEE
Confidence 4556666654 589997766555443 22456667775432 22355656677999986 356543
No 379
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=27.31 E-value=3e+02 Score=21.35 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeEE
Q 029703 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMK 165 (189)
Q Consensus 107 ~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~ 165 (189)
+-|++|++..-.+.. .+-.+.+..+|....+..+.+..-...+|+++- +|..+
T Consensus 17 ~~cp~~~rv~i~L~e----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l 69 (236)
T TIGR00862 17 GNCPFSQRLFMILWL----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVK 69 (236)
T ss_pred CCCHhHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEe
Confidence 458999987766654 223577788887765445777667788999863 56543
No 380
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.01 E-value=3.6e+02 Score=21.62 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC-ChH---HHHHhCCCCCCCeE
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSK---DLVKRGNISKMPTI 156 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~-~~~---~l~~~~~i~~~Pt~ 156 (189)
.+.+.|..++..-.... +-+ .++.+.|..-..=.....+++++. ++.++--+-+. +.. ++|.+.+ .||+
T Consensus 167 ~~~~~~~~iv~~l~~~~-~~~-~v~~TIC~aT~~RQ~a~~~La~~v--D~miVVGg~~SsNT~rL~eia~~~~---~~t~ 239 (281)
T PRK12360 167 IIPELWEDILNVIKLKS-KEL-VFFNTICSATKKRQESAKELSKEV--DVMIVIGGKHSSNTQKLVKICEKNC---PNTF 239 (281)
T ss_pred CcHHHHHHHHHHHHHhC-ccc-ccCCCcchhhhhHHHHHHHHHHhC--CEEEEecCCCCccHHHHHHHHHHHC---CCEE
Confidence 35667777664331222 222 346999988777777788887765 33333222222 221 3566654 4555
Q ss_pred EEE----------eCCeEEEEEeCCCcchhhHHHHHHHHHh
Q 029703 157 QIW----------KDGEMKSEVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 157 ~~~----------~~G~~~~~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+= ++-+.++-..|..+++.+.+++.++|++
T Consensus 240 ~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 240 HIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred EECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 542 2334577888999998888888888765
No 381
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=24.63 E-value=81 Score=20.15 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred ccceeecCChhHHHHHHHHhhcCCCcEE
Q 029703 74 SVELEPINDSDHLDQILLRAQELSQPIL 101 (189)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~~a~~~~k~~v 101 (189)
..++.+|++.++|.+++. ..+|.+
T Consensus 50 ~gDLLPInNDdNf~kAls----sa~plL 73 (80)
T cd06403 50 HGDLLPINNDDNFLKALS----SANPLL 73 (80)
T ss_pred CCCEecccCcHHHHHHHH----cCCCce
Confidence 567889999999999994 446554
No 382
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.04 E-value=1.5e+02 Score=23.00 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.3
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHHhCCCe
Q 029703 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKL 130 (189)
Q Consensus 99 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v 130 (189)
..+-.|+..-||.|-.-.+.|+++..++...+
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 33444556789999999999999999985443
No 383
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=56 Score=25.87 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=20.6
Q ss_pred CccccCCCccccceecCce-EEEeCC
Q 029703 26 QPWSSGSSSCLLLQKNSAF-FWVDTA 50 (189)
Q Consensus 26 ~~~~i~g~Ptl~~~~~~~~-~~~~g~ 50 (189)
..+||+..||.++|++|.- .-+.|.
T Consensus 68 a~~gV~amPTFiff~ng~kid~~qGA 93 (288)
T KOG0908|consen 68 ATNGVNAMPTFIFFRNGVKIDQIQGA 93 (288)
T ss_pred hhcCcccCceEEEEecCeEeeeecCC
Confidence 7889999999999999877 445554
No 384
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.87 E-value=1.1e+02 Score=22.48 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhC
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFD 127 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~ 127 (189)
.|+..-||.|....+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667789999999999999999884
No 385
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.14 E-value=1.2e+02 Score=21.69 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhhcCCCcEEEEEecCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEEc
Q 029703 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDV 137 (189)
Q Consensus 83 ~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~~v~~~~vd~ 137 (189)
.+.+.+++ ...+|-+|-. +-+...|+.+...+.++.++.. ..+.+..+|-
T Consensus 52 ~~~l~~~i----~~~kP~vI~v-~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 52 MERLKKFI----EKHKPDVIAV-GGNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHHHHHHH----HHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHHHHHHH----HHcCCeEEEE-cCCChhHHHHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 35666777 3456655555 4478999999999999888763 2455555553
No 386
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=23.09 E-value=1.1e+02 Score=20.00 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=28.6
Q ss_pred HHhCCCCCCCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 145 VKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 145 ~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
+-+|+++..-.=.+|.+|+.+.+-.|......+..-+...+
T Consensus 16 ~lryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al~ 56 (111)
T PF02484_consen 16 ALRYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNALI 56 (111)
T ss_pred HHHHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHHH
Confidence 34566665555667899999999999887755555555544
No 387
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=23.08 E-value=42 Score=16.51 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=8.4
Q ss_pred CCccccCCCcc
Q 029703 25 QQPWSSGSSSC 35 (189)
Q Consensus 25 ~~~~~i~g~Pt 35 (189)
|..|.+.|+|.
T Consensus 5 C~~~~~~gipC 15 (28)
T smart00575 5 CRKFQLSGIPC 15 (28)
T ss_pred CCCcccCCccH
Confidence 67788888874
No 388
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=22.04 E-value=2.1e+02 Score=17.88 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=17.9
Q ss_pred eCCeEEEEEeCCCcchhhHHHHHHHHHhh
Q 029703 160 KDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 160 ~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
-++.++.|.-|.- +.|.+||.++
T Consensus 44 l~~~VMVRVGGGW------~tL~~fL~kh 66 (73)
T smart00243 44 LRSTVMVRVGGGW------ETLDEYLLKH 66 (73)
T ss_pred eCCeEEEEECCcH------HHHHHHHHhC
Confidence 4678888888876 6789998875
No 389
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.91 E-value=85 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.581 Sum_probs=20.1
Q ss_pred cceeecCChhHHHHHHHHhhcCCCcEEEEEecCCChh
Q 029703 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK 111 (189)
Q Consensus 75 ~~~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~ 111 (189)
..+..+++.++|..++ ++ |-+++ +|||+.
T Consensus 465 s~~~~v~~~~eF~~aL----~~-k~iil---aPwcg~ 493 (551)
T KOG4163|consen 465 SHIVKVNTWEEFVKAL----DQ-KKIIL---APWCGE 493 (551)
T ss_pred hheeeeeeHHHHHHHh----cc-CCEEE---ccccCc
Confidence 3456677888898888 44 44444 899974
No 390
>PRK10387 glutaredoxin 2; Provisional
Probab=21.81 E-value=3.3e+02 Score=19.91 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=30.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCeE
Q 029703 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM 164 (189)
Q Consensus 103 ~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~ 164 (189)
.++.+.|++|.+..-.++... -.+....++...... ..+......+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~g----i~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKN----IPVELIVLANDDEAT-PIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcC----CCeEEEEcCCCchhh-HHHhcCCcccceEEe-cCCeE
Confidence 345677999998766554432 233444444333222 223334568999854 35644
No 391
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.60 E-value=36 Score=24.25 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.1
Q ss_pred CChhhhhhhHHHH
Q 029703 108 WCRKCIYLKPKLE 120 (189)
Q Consensus 108 wC~~C~~~~~~l~ 120 (189)
-|++|+++.|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999988774
No 392
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.56 E-value=35 Score=24.26 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=11.1
Q ss_pred CChhhhhhhHHHH
Q 029703 108 WCRKCIYLKPKLE 120 (189)
Q Consensus 108 wC~~C~~~~~~l~ 120 (189)
-|++|+++.|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999988774
No 393
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=3.6e+02 Score=20.09 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=20.3
Q ss_pred CCCcEEEEEec-CCChhhhhh----hHHHHHHHHHhCCCeEEEEEEcc
Q 029703 96 LSQPILIDWMA-SWCRKCIYL----KPKLEKLAAEFDTKLKFYYVDVN 138 (189)
Q Consensus 96 ~~k~~vv~f~a-~wC~~C~~~----~~~l~~~~~~~~~~v~~~~vd~~ 138 (189)
.++++|++||- ..-+-|-+. +..++++.+. ...++.+..|
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---~aeV~GlS~D 133 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---GAEVIGLSGD 133 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhc---CceEEeeccC
Confidence 56799999982 222334333 3444544443 2344444444
No 394
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=20.73 E-value=2.2e+02 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 153 MPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 153 ~Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
-.|+.+|..|+.+ .+|..+.+.....+..++
T Consensus 47 ~~t~lIf~sGKiv--itGaks~~~~~~a~~~~~ 77 (174)
T cd00652 47 KTTALIFSSGKMV--ITGAKSEEDAKLAARKYA 77 (174)
T ss_pred cEEEEEECCCEEE--EEecCCHHHHHHHHHHHH
Confidence 3578889999985 588888855555444443
No 395
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.72 E-value=2.1e+02 Score=21.12 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=21.1
Q ss_pred CeEEEEeCCeEEEEEeCCCcchhhHHHHHHHH
Q 029703 154 PTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 185 (189)
Q Consensus 154 Pt~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i 185 (189)
.++++|..|+.+ .+|..+.+.....+..++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~~ 77 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEII 77 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHH
Confidence 578889999985 589988855555444443
No 396
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=20.51 E-value=1.5e+02 Score=17.31 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=26.0
Q ss_pred EecCCChhhhhhhHHHHHHHHHhCCCeEEEEEEccC---ChHHHHHhCCCCCCCeEE
Q 029703 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 104 f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~~l~~~~~i~~~Pt~~ 157 (189)
++.+.|+.|.+..-.+.. .+-.+....+|... ...++.+......+|++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 4 YSYFRSSASYRVRIALNL----KGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred ecCCCCcchHHHHHHHHH----cCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 334445555554333333 22345555666532 122355656678999875
No 397
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=37 Score=27.41 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=22.6
Q ss_pred cCCccccCCCccccceecCce-EEEeCCC
Q 029703 24 FQQPWSSGSSSCLLLQKNSAF-FWVDTAS 51 (189)
Q Consensus 24 ~~~~~~i~g~Ptl~~~~~~~~-~~~~g~~ 51 (189)
.-..+||+++||+..|.+|.+ ..|.|..
T Consensus 89 vAaqfgiqsIPtV~af~dGqpVdgF~G~q 117 (304)
T COG3118 89 VAAQFGVQSIPTVYAFKDGQPVDGFQGAQ 117 (304)
T ss_pred HHHHhCcCcCCeEEEeeCCcCccccCCCC
Confidence 346789999999999999988 5666653
No 398
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=20.42 E-value=2.3e+02 Score=21.23 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=37.0
Q ss_pred hhhhhhhHHHHHHHHHhCCCeEEEEEEccCChH---HHHHhCC-CCCCCeEEEEe-CCeEEEEEeC
Q 029703 110 RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGN-ISKMPTIQIWK-DGEMKSEVIG 170 (189)
Q Consensus 110 ~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~---~l~~~~~-i~~~Pt~~~~~-~G~~~~~~~g 170 (189)
+.-..|...|+.++... ..++.+.|.|...+. .+...|. +...|...++. ||+++.--.|
T Consensus 18 gr~~~F~~lw~~l~~~~-~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG 82 (183)
T PF12617_consen 18 GRLAAFERLWQALAPSV-PQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIG 82 (183)
T ss_pred CccHHHHHHHHHHHhhh-hhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCC
Confidence 33445666666666655 678888888887643 2333343 45577777776 8988643333
No 399
>PLN02378 glutathione S-transferase DHAR1
Probab=20.11 E-value=2.9e+02 Score=20.55 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=33.1
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEEccCChHHHHHhCCCCCCCeEEEEeCCe
Q 029703 107 SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGE 163 (189)
Q Consensus 107 ~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~ 163 (189)
.+|++|++..-.+++. +-.+.+..+|....+.++.+-.-...+|++. .+|.
T Consensus 18 ~~~p~~~rv~~~L~e~----gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~--~~~~ 68 (213)
T PLN02378 18 GDCPFSQRALLTLEEK----SLTYKIHLINLSDKPQWFLDISPQGKVPVLK--IDDK 68 (213)
T ss_pred CCCcchHHHHHHHHHc----CCCCeEEEeCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 4599999876666443 2346666777755544466666678999885 2554
No 400
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=1.1e+02 Score=21.69 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=17.4
Q ss_pred CCCCCeEEEE-eCCeEEE-EEeCCCcchhhHHHHHHHHHh
Q 029703 150 ISKMPTIQIW-KDGEMKS-EVIGGHKAWLVIEEVREMIKK 187 (189)
Q Consensus 150 i~~~Pt~~~~-~~G~~~~-~~~g~~~~~~~~~~l~~~i~~ 187 (189)
.+-.|....| ++|+.+- ...|. +. ++|.+.|.+
T Consensus 71 mtpsPF~R~YlddGr~vL~Dld~~-~r----~eI~~hl~K 105 (169)
T KOG4079|consen 71 MTPSPFARAYLDDGREVLFDLDGM-KR----EEIEKHLAK 105 (169)
T ss_pred CCCChHHHheecCcceEEEEcccc-cH----HHHHHHHHH
Confidence 4455666666 5777654 44444 33 445444443
Done!