Query 029703
Match_columns 189
No_of_seqs 194 out of 1983
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 18:24:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029703.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2323-2327//hhsearch_pdb/029703hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idv_A Protein disulfide-isome 1.0 1 1 154.8 10.4 155 22-189 79-236 (241)
2 3apo_A DNAJ homolog subfamily 1.0 1 1 151.1 8.7 150 22-189 607-766 (780)
3 2av4_A Thioredoxin-like protei 1.0 1 1 148.1 11.6 105 77-188 23-137 (160)
4 3zzx_A Thioredoxin; oxidoreduc 1.0 1 1 145.0 15.2 103 77-188 2-104 (105)
5 1a8l_A Protein disulfide oxido 1.0 1 1 143.8 10.4 151 22-189 68-225 (226)
6 2qgv_A Hydrogenase-1 operon pr 1.0 1 1 143.2 9.7 99 81-188 22-123 (140)
7 2qsi_A Putative hydrogenase ex 1.0 1 1 142.9 11.0 103 77-188 17-121 (137)
8 3uem_A Protein disulfide-isome 1.0 1 1 139.8 7.8 157 21-188 180-355 (361)
9 2ywm_A Glutaredoxin-like prote 1.0 1 1 139.7 8.6 147 21-188 70-218 (229)
10 3apo_A DNAJ homolog subfamily 1.0 1 1 139.3 9.3 151 22-188 499-654 (780)
No 1
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=1.00 E-value=1 Score=154.75 Aligned_cols=155 Identities=20% Similarity=0.353 Sum_probs=119.6
Q ss_pred CCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 34688512479850010015743897089864234665103430389999985322324996579999999630899499
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPIL 101 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~v 101 (189)
..+|..|+|.++||+.++++|....+.|........... .....+....+ .......+.++|++.+ ..+++++
T Consensus 79 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i-~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~ 151 (241)
T 3idv_A 79 SVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKV-REVSQPDWTPP--PEVTLVLTKENFDEVV----NDADIIL 151 (241)
T ss_dssp HHHHHHTTCCSSSEEEEEETTEEEECCSCSCHHHHHHHH-HHHHSTTCCCC--CCSSEECCTTTHHHHH----HHCSEEE
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH-HHCCCCCCCCC--CCCCEECCHHHHHHHH----CCCCEEE
T ss_conf 888986598868789997189734445755578889887-64147653445--5310112588899763----4697499
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHH
Q ss_conf 999569995443210999999998279---70999998558718899868999787699982995889984887500169
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
|+||++||++|+.+.|.+.++++.+.+ .+.|+.+|++.++. ++++|+|.++||+++|++|+.+. +.|..+.
T Consensus 152 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~g~~~~-~~g~~~~---- 225 (241)
T 3idv_A 152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD-LAKRFDVSGYPTLKIFRKGRPYD-YNGPREK---- 225 (241)
T ss_dssp EEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH-HHHHTTCCSSSEEEEEETTEEEE-CCSCCSH----
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHH-HHHHCCCCCCCEEEEEECCEEEE-ECCCCCH----
T ss_conf 99988888788876789999999986328967999998987787-89872986368799998996888-2587898----
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998429
Q 029703 179 EEVREMIKKFV 189 (189)
Q Consensus 179 ~~l~~~i~~~l 189 (189)
+.|.+||.+.+
T Consensus 226 ~~l~~~l~~~~ 236 (241)
T 3idv_A 226 YGIVDYMIEQS 236 (241)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999622
No 2
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=151.07 Aligned_cols=150 Identities=12% Similarity=0.197 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCCCCCEECCC-----EEEEEC-CCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHC
Q ss_conf 3468851247985001001574-----389708-9864234665103430389999985322324996579999999630
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSA-----FFWVDT-ASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQE 95 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~ 95 (189)
..+|..|+|.||||+.+++++. ...|.| .+.... +..+......+. +..+ +.++|.+.+. .
T Consensus 607 ~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~------l~~fi~~~~~~~---v~~l-~~~~~~~~~~---~ 673 (780)
T 3apo_A 607 HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYS------LRSWGLGFLPQA---SIDL-TPQTFNEKVL---Q 673 (780)
T ss_dssp HHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHH------HHHHHHTTSCCC---SEEE-CHHHHHHHTT---T
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHH------HHHHHHHHCCCC---CCCC-CHHHHHHHHH---C
T ss_conf 8889874998798699974898676652223788887799------999876425655---4307-8888899986---6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECC----
Q ss_conf 8994999995699954432109999999982797099999855871889986899978769998299588998488----
Q 029703 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG---- 171 (189)
Q Consensus 96 ~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~---- 171 (189)
.+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++..+. ++++|+|.++||+++|++|+.+.++.|.
T Consensus 674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~g~ 752 (780)
T 3apo_A 674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQ-TCQKAGIKAYPSVKLYQYERAKKSIWEEQINS 752 (780)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCSSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99749999989999789999999999999845882699998977799-99866987477799982887343135765677
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 750016999999998429
Q 029703 172 HKAWLVIEEVREMIKKFV 189 (189)
Q Consensus 172 ~~~~~~~~~l~~~i~~~l 189 (189)
.+. +.|.++|++.+
T Consensus 753 ~~~----~~l~~~l~~~l 766 (780)
T 3apo_A 753 RDA----KTIAALIYGKL 766 (780)
T ss_dssp CCH----HHHHHHHHHHT
T ss_pred CCH----HHHHHHHHHHH
T ss_conf 689----99999999998
No 3
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=1.00 E-value=1 Score=148.12 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=92.3
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf 23249965799999996308994999995699954432109999999982797099999855871889986899978769
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+..+.+.++|++.+.. .++++++|+||++||+||+.+.|.++++++++.+++.|+++|+|++++ ++.+|+|.++||+
T Consensus 23 v~~l~t~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e-~a~~y~V~siPT~ 99 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD-FNTMYELYDPVSV 99 (160)
T ss_dssp CEECCSHHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT-TTTTTTCCSSEEE
T ss_pred HHCCCCHHHHHHHHHH--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHCCCCCCCEE
T ss_conf 3405989999999971--599879999989998108889999999999756975899998978989-9987597789989
Q ss_pred EEEECCEEE--E-------EEECCCC-CHHHHHHHHHHHHHH
Q ss_conf 998299588--9-------9848875-001699999999842
Q 029703 157 QIWKDGEMK--S-------EVIGGHK-AWLVIEEVREMIKKF 188 (189)
Q Consensus 157 ~~~~~G~~~--~-------~~~g~~~-~~~~~~~l~~~i~~~ 188 (189)
++|++|+.+ . +..|..+ . ++|.++|+.+
T Consensus 100 ~fFk~G~~v~vd~Gtgd~~k~vGa~~~k----~~l~~~ie~~ 137 (160)
T 2av4_A 100 MFFYRNKHMMIDLGTGNNNKINWPMNNK----QEFIDIVETI 137 (160)
T ss_dssp EEEETTEEEEEECSSSCCSCBCSCCCCH----HHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCCCCEEEEECCCH----HHHHHHHHHH
T ss_conf 9999998988742778767688614989----9999999999
No 4
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=1.00 E-value=1 Score=144.95 Aligned_cols=103 Identities=25% Similarity=0.542 Sum_probs=93.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEE
Q ss_conf 23249965799999996308994999995699954432109999999982797099999855871889986899978769
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTI 156 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~ 156 (189)
+..+.+.++|++.+.. .++++++|+||++||+||+.+.|.++++++.+ +++.|+++|++.+++ ++++|+|.++||+
T Consensus 2 V~~i~~~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~d~~~~-l~~~~~V~~~PT~ 77 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDECED-IAQDNQIACMPTF 77 (105)
T ss_dssp CEECCSHHHHHHHHHH--TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTEEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred EEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC-CCEEEEEEECCCCHH-HHHHCCCCEECEE
T ss_conf 4993889999999986--69987999998999888647783022122304-774899973401899-9987599751579
Q ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99829958899848875001699999999842
Q 029703 157 QIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 157 ~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
++|++|+.+.++.|. +. ++|.++|+++
T Consensus 78 ~~~~~G~~v~~~~G~-~~----~~l~~~i~k~ 104 (105)
T 3zzx_A 78 LFMKNGQKLDSLSGA-NY----DKLLELVEKN 104 (105)
T ss_dssp EEEETTEEEEEEESC-CH----HHHHHHHHHH
T ss_pred EEEECCEEEEEEECC-CH----HHHHHHHHHC
T ss_conf 999899999999496-99----9999999965
No 5
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=1.00 E-value=1 Score=143.76 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCCCCCCEECCCE--EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 34688512479850010015743--8970898642346651034303899999853223249965799999996308994
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAF--FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP 99 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~ 99 (189)
..+|..|+|.++||+.++++|.. ..|.|.......... ..... ....+ .. ..+.+.++.+. ..+++
T Consensus 68 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~~~~l~~~--l~~~l-~~~~~----~~-~l~~~~~~~~~----~~~~~ 135 (226)
T 1a8l_A 68 KELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAF--LEDIV-DVSRE----ET-NLMDETKQAIR----NIDQD 135 (226)
T ss_dssp HHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTTHHHHH--HHHHH-HHHHT----CC-CCCHHHHHHHT----TCCSC
T ss_pred HHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHH--HHHHH-HHCCC----CC-CCCHHHHHHHH----HCCCC
T ss_conf 9999975998676699985896015799614868999999--99998-50599----87-77988999998----53798
Q ss_pred E-EEEEECCCCHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCC
Q ss_conf 9-999956999544321099999999827----97099999855871889986899978769998299588998488750
Q 029703 100 I-LIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKA 174 (189)
Q Consensus 100 ~-vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~ 174 (189)
+ +|+||++||++|+.+.|.++++++.+. +++.++.+|++.++. ++++|+|.++||+++|++|+.+.++.|..+.
T Consensus 136 ~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 214 (226)
T 1a8l_A 136 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKIVIQVNGEDRVEFEGAYPE 214 (226)
T ss_dssp EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEEEEEETTEEEEEEESCCCH
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHH-HHHHCCCCCCCEEEEEECCCEEEEECCCCCH
T ss_conf 089999679998618899999999986521467728999997651888-9985798661769998289446898178999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 016999999998429
Q 029703 175 WLVIEEVREMIKKFV 189 (189)
Q Consensus 175 ~~~~~~l~~~i~~~l 189 (189)
+.|.++|++.+
T Consensus 215 ----~~l~~~l~~~l 225 (226)
T 1a8l_A 215 ----KMFLEKLLSAL 225 (226)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH
T ss_conf ----99999999962
No 6
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=1.00 E-value=1 Score=143.25 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHCCCCCCCEEE
Q ss_conf 9965799999996308994999995699--954432109999999982797-0999998558718899868999787699
Q 029703 81 NDSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNISKMPTIQ 157 (189)
Q Consensus 81 ~~~~~~~~~~~~a~~~~k~~vv~f~a~w--C~~C~~~~~~l~~~~~~~~~~-v~~~~vd~~~~~~~l~~~~~i~~~Pt~~ 157 (189)
.+.++|++.+ .++++++|+||++| |++|+.+.|++++++++|.++ +.|+++|+|++++ ++.+|+|.++||++
T Consensus 22 ~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~-lA~~ygV~sIPTli 96 (140)
T 2qgv_A 22 VSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA-IGDRFGAFRFPATL 96 (140)
T ss_dssp CCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH-HHHHHTCCSSSEEE
T ss_pred CCHHHHHHHH----HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHH-HHHHCCCCCCCEEE
T ss_conf 7887899998----579988999968834587488777489999987689858999997988989-99976985589799
Q ss_pred EEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9829958899848875001699999999842
Q 029703 158 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 158 ~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
+|++|+.+.+..|..+. ++|.++|+++
T Consensus 97 lFk~G~~v~~~~G~~~k----~~l~~~i~~~ 123 (140)
T 2qgv_A 97 VFTGGNYRGVLNGIHPW----AELINLMRGL 123 (140)
T ss_dssp EEETTEEEEEEESCCCH----HHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCH----HHHHHHHHHH
T ss_conf 99999998998367899----9999999998
No 7
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=1.00 E-value=1 Score=142.90 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=90.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC--HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf 232499657999999963089949999956999--544321099999999827970999998558718899868999787
Q 029703 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWC--RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMP 154 (189)
Q Consensus 77 ~~~i~~~~~~~~~~~~a~~~~k~~vv~f~a~wC--~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~P 154 (189)
+..++ .++|++.+. ..+++++|+||++|| +||+.+.|++++++++|.+++.|+++|+|++++ ++.+|+|.++|
T Consensus 17 ~~~vt-~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~-la~~ygV~siP 91 (137)
T 2qsi_A 17 PTLVD-EATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG-LMARFGVAVCP 91 (137)
T ss_dssp CEEEC-TTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH-HHHHHTCCSSS
T ss_pred CCCCC-HHHHHHHHH---CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHCCCCCCC
T ss_conf 92548-868999996---18995899986796678851557868999999745995799997988989-99985986589
Q ss_pred EEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 6999829958899848875001699999999842
Q 029703 155 TIQIWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 155 t~~~~~~G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
|+++|++|+.+.+..|..+. ++|.++|+++
T Consensus 92 TlilFkdG~~v~~~vG~~~k----~~l~~~l~~~ 121 (137)
T 2qsi_A 92 SLAVVQPERTLGVIAKIQDW----SSYLAQIGAM 121 (137)
T ss_dssp EEEEEECCEEEEEEESCCCH----HHHHHHHHHH
T ss_pred EEEEEECCEEEEEEECCCCH----HHHHHHHHHH
T ss_conf 89999999999998177899----9999999998
No 8
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=1.00 E-value=1 Score=139.77 Aligned_cols=157 Identities=11% Similarity=0.261 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCC--CCCCCCEECCC-EEEEE---CCCCCCCCCCC---CEEEEECCCCC---CC---CCCCEEECCCHHH
Q ss_conf 334688512479--85001001574-38970---89864234665---10343038999---99---8532232499657
Q 029703 21 KQQFQQPWSSGS--SSCLLLQKNSA-FFWVD---TASRSKSARRD---VRVEALWPDLS---RP---TSVELEPINDSDH 85 (189)
Q Consensus 21 ~~~~~~~~~i~g--~Ptl~~~~~~~-~~~~~---~~~~~~~~~~~---~~~~~~~~~~~---~~---~~~~~~~i~~~~~ 85 (189)
-+.+|+.|+|.+ +|++.+++.+. ...|. +....+..... .......+... .| ....+..+ +.++
T Consensus 180 ~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l-~~~~ 258 (361)
T 3uem_A 180 NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVL-VGKN 258 (361)
T ss_dssp GHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEE-CTTT
T ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE-ECCC
T ss_conf 788898759983578647999768766112788665698999999999855887654667889964224896796-2675
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHCCCCCCCEEEEEEC--
Q ss_conf 9999999630899499999569995443210999999998279--709999985587188998689997876999829--
Q 029703 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKD-- 161 (189)
Q Consensus 86 ~~~~~~~a~~~~k~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~-- 161 (189)
|++.+. ..+++++|+||++||++|+.+.|.|+++++.+++ .+.++.+|++.+. +.+|+|.++||+++|.+
T Consensus 259 f~~~~~---~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~---~~~~~v~~~Pt~~~~~~~~ 332 (361)
T 3uem_A 259 FEDVAF---DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE---VEAVKVHSFPTLKFFPASA 332 (361)
T ss_dssp HHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB---CSSCCCCSSSEEEEECSSS
T ss_pred HHHHCC---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC---HHHCCCCCCCEEEEEECCC
T ss_conf 133202---5898699999658297689878999999998556886799999898560---2116876528699998979
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 958899848875001699999999842
Q 029703 162 GEMKSEVIGGHKAWLVIEEVREMIKKF 188 (189)
Q Consensus 162 G~~~~~~~g~~~~~~~~~~l~~~i~~~ 188 (189)
|+...++.|.++. +.|.+||+++
T Consensus 333 ~~~~~~~~G~~~~----~~l~~~l~~~ 355 (361)
T 3uem_A 333 DRTVIDYNGERTL----DGFKKFLESG 355 (361)
T ss_dssp SCCCEECCSCSSH----HHHHHHHTTT
T ss_pred CCCEEEECCCCCH----HHHHHHHHHC
T ss_conf 8611482587899----9999999965
No 9
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=1.00 E-value=1 Score=139.75 Aligned_cols=147 Identities=10% Similarity=0.166 Sum_probs=108.5
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCE-EEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 334688512479850010015743-8970898642346651034303899999853223249965799999996308994
Q 029703 21 KQQFQQPWSSGSSSCLLLQKNSAF-FWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP 99 (189)
Q Consensus 21 ~~~~~~~~~i~g~Ptl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~ 99 (189)
...+|+.|+|++|||+++++++.. ..|.|.+........ +.... ....+ .. ..+.++|+.++ ..+++
T Consensus 70 ~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~--~~~~~-~~~~~----~~-~l~~~~~~~~~----~~~~~ 137 (229)
T 2ywm_A 70 HKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTL--INGIF-HVSQR----KP-QLSEKTLELLQ----VVDIP 137 (229)
T ss_dssp CHHHHHHTTCCBSSEEEEESSSCCCEEEESCCCTTHHHHH--HHHHH-HHHTT----CC-SCCHHHHHHHT----TCCSC
T ss_pred CHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCHHHHHHH--HHHHH-HCCCC----CC-CCCHHHHHHHH----HCCCC
T ss_conf 3788987499857679997798555233388627779999--99987-40478----66-77989999998----34898
Q ss_pred E-EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCHHHH
Q ss_conf 9-999956999544321099999999827970999998558718899868999787699982995889984887500169
Q 029703 100 I-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVI 178 (189)
Q Consensus 100 ~-vv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~g~~~~~~~~ 178 (189)
+ +++||++||++|+.+.|.++++++.+ +++.++.+|++.++. ++++|+|.++||+++ +|+ +.++.|..+.
T Consensus 138 ~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~--~G~-~~~~~G~~~~---- 208 (229)
T 2ywm_A 138 IEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQD-LAEQFQVVGVPKIVI--NKG-VAEFVGAQPE---- 208 (229)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGCHH-HHHHTTCCSSSEEEE--GGG-TEEEESCCCH----
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCHH-HHHHCCCCCCCEEEE--CCE-EEEEECCCCH----
T ss_conf 6999997998964388999999999887-972999998989999-999819965497999--997-9785578999----
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999842
Q 029703 179 EEVREMIKKF 188 (189)
Q Consensus 179 ~~l~~~i~~~ 188 (189)
+.|.++|++.
T Consensus 209 ~~l~~~l~~~ 218 (229)
T 2ywm_A 209 NAFLGYIMAV 218 (229)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 10
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=139.27 Aligned_cols=151 Identities=12% Similarity=0.249 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 34688512479850010015743897089864234665103430389999985322324996579999999630899499
Q 029703 22 QQFQQPWSSGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPIL 101 (189)
Q Consensus 22 ~~~~~~~~i~g~Ptl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~k~~v 101 (189)
..+|..|+|.++||+.++++|....|.|.......... +.... .++ +..++ .++|++++... ..++.++
T Consensus 499 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~f--i~~~~----~~~---v~~l~-~~~f~~~v~~~-~~~~~~l 567 (780)
T 3apo_A 499 EGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEF--IEDLR----NPS---VVSLT-PSTFNELVKQR-KHDEVWM 567 (780)
T ss_dssp HHHHHHTTCCSSSEEEEEETTEEEEECSCSCHHHHHHH--HHHHH----SCS---EEECC-HHHHHHHTTTC-CTTCCEE
T ss_pred HHHHHHCCCCCCCEEEEECCCCEEEECCCCCHHHHHHH--HHHHC----CCC---EEECC-CCCHHHHHHCC-CCCCEEE
T ss_conf 99999829876886999728950231375558899999--87505----663---35257-30278886336-7787079
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCEE----EEEEEC-CCCCHH
Q ss_conf 999569995443210999999998279709999985587188998689997876999829958----899848-875001
Q 029703 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEM----KSEVIG-GHKAWL 176 (189)
Q Consensus 102 v~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~~l~~~~~i~~~Pt~~~~~~G~~----~~~~~g-~~~~~~ 176 (189)
|.||+|||++|+.+.|.|+++++.+++++.|+.+|++.+.. ++.+|+|.++||+++|..|.. ...|.| .++.
T Consensus 568 v~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~-- 644 (780)
T 3apo_A 568 VDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS-FCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDA-- 644 (780)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTHH-HHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSH--
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHH-HHHHCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCH--
T ss_conf 99989989789985499999999965783899998950288-898749987986999748986766522237888877--
Q ss_pred HHHHHHHHHHHH
Q ss_conf 699999999842
Q 029703 177 VIEEVREMIKKF 188 (189)
Q Consensus 177 ~~~~l~~~i~~~ 188 (189)
+.|.+|+.+.
T Consensus 645 --~~l~~fi~~~ 654 (780)
T 3apo_A 645 --YSLRSWGLGF 654 (780)
T ss_dssp --HHHHHHHHTT
T ss_pred --HHHHHHHHHH
T ss_conf --9999987642
Done!