BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029706
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRG6|SAS6_XENLA Spindle assembly abnormal protein 6 homolog OS=Xenopus laevis
GN=sas6 PE=2 SV=1
Length = 668
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 13 VSGPYYIQQHRGAFSGSHSATQSGLMQ-TPPGFRSSSN---LNIPTQPNVGSTFAVEPKH 68
+ GP+ + + + SA+ G+MQ T P F ++ ++ TQP +GS F
Sbjct: 490 LQGPHGLHEMPSSLKTVGSASNVGVMQSTQPQFTIGNDPYMVSPITQP-IGSAFVSNFYP 548
Query: 69 VNFGHNMSVPSGVPLS---DPVKKKRGRPR-KYAPDGQVSLGLSPLPARPKRSP 118
NF MS PS + L +P + R +P S + P PA +P
Sbjct: 549 KNFAPGMSAPSSISLGTRLNPQAAFKANVRFNQSPTALCSPAVEPRPAPSTSTP 602
>sp|E1C213|UBP37_CHICK Ubiquitin carboxyl-terminal hydrolase 37 OS=Gallus gallus GN=USP37
PE=3 SV=1
Length = 986
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 80 GVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGT 135
G P VK G AP +V++ SP + P R+ +S++ KR R +PP +
Sbjct: 164 GTPARASVKNSSGTG---APSNRVNVAASPTSSVPHRTGLLESRSEKRKRAQPPSS 216
>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum
GN=PRH PE=2 SV=1
Length = 1088
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 67 KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQ--- 123
K + G S L D K+ RGRPRK V GL L + + S SQ
Sbjct: 350 KELVIGQETVAKSPSQLVDAGKRGRGRPRK------VQTGLEQLVPVQETAAKSSSQLGD 403
Query: 124 ALKRSRGRP 132
KRSRGRP
Sbjct: 404 TGKRSRGRP 412
>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
Length = 972
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 88 KKKRGRPRKYAPDGQVSL--GLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLAT 143
K+ RGRPRK P+ S GLSPL P KR RGRPP +Q++A
Sbjct: 201 KRGRGRPRKIKPEEGSSSQNGLSPLVVLPA----------KRGRGRPPLHRSEQKIAN 248
>sp|A4XWP8|RLMKL_PSEMY Ribosomal RNA large subunit methyltransferase K/L OS=Pseudomonas
mendocina (strain ymp) GN=rlmL PE=3 SV=1
Length = 725
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 94 PRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAG 153
PR PD + L L A P+ + S+ + R R GT + Q+ A G++M S G
Sbjct: 473 PRSVDPDKAQARLLDALAAIPQALGVAQSRVAIKRRERQTGTKQYQRQAAQGQFMEVSEG 532
>sp|Q9VYD1|C1716_DROME Probable histone-lysine N-methyltransferase CG1716 OS=Drosophila
melanogaster GN=Set2 PE=1 SV=2
Length = 2313
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 53 PTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRK 96
PTQ + + EP V H + +G+P P +KRGRPRK
Sbjct: 164 PTQSLIVAQVTSEPSAVGGAHPVQTMAGLPPVTP--RKRGRPRK 205
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 34 QSGLMQTPPGFRSSSNLNIPTQ-PNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRG 92
Q+G+ G S+N +PT P V TF VN H+ VP + LSD KK+
Sbjct: 106 QTGIFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELL 165
Query: 93 RPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKR 127
+ + L S LP + P + LKR
Sbjct: 166 K--------RYRLKESQLPRIQRMDPVALYLGLKR 192
>sp|Q09931|UBPY_CAEEL Probable ubiquitin carboxyl-terminal hydrolase K02C4.3
OS=Caenorhabditis elegans GN=K02C4.3 PE=3 SV=3
Length = 1276
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 31 SATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGV 81
+A S ++ PPG+ +++NL++P+ +V + P +VN S P+ +
Sbjct: 313 TAPNSDIIGAPPGY-NAANLSLPSSSHVDPKSTLNPMYVNEKEPSSTPTSL 362
>sp|B4NXA8|AFF4_DROYA AF4/FMR2 family member 4 OS=Drosophila yakuba GN=lilli PE=3 SV=1
Length = 1671
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 66 PKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDG 101
PKH H+ P +D VKK RGRPRK G
Sbjct: 827 PKHPGLDHSAVSVQAQPATDTVKKGRGRPRKQQQSG 862
>sp|A1IGU4|ARH37_MOUSE Rho guanine nucleotide exchange factor 37 OS=Mus musculus
GN=Arhgef37 PE=2 SV=1
Length = 676
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 48 SNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSD-PVKKKRGRP----------RK 96
+ L++PT P + AV P H +S+ +G P++ + K+G P R
Sbjct: 595 TQLSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKGNPEWSLVEANGQRG 654
Query: 97 YAPDGQVSLGLSPLP 111
Y P ++ SP P
Sbjct: 655 YVPSNFLARTPSPTP 669
>sp|Q9VQI9|AFF4_DROME AF4/FMR2 family member 4 OS=Drosophila melanogaster GN=lilli PE=1
SV=2
Length = 1673
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 66 PKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDG 101
PKH H P +D VKK RGRPRK G
Sbjct: 829 PKHPGLDHTAVSVQTQPATDTVKKGRGRPRKQQQSG 864
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,028,367
Number of Sequences: 539616
Number of extensions: 3607376
Number of successful extensions: 9303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 9205
Number of HSP's gapped (non-prelim): 187
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)