Query 029706
Match_columns 189
No_of_seqs 117 out of 166
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 18:17:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029706.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2328-2331//hhsearch_pdb/029706hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ezd_A High mobility group pro 1.0 1 1 25.7 0.8 16 124-139 3-18 (26)
2 4dyq_A Gene 1 protein; GP1, oc 1.0 1 1 24.5 1.0 15 86-100 2-16 (140)
3 1ub1_A MECP2, attachment regio 1.0 1 1 15.8 1.2 14 123-136 120-133 (133)
4 3c75_A Amicyanin; copper prote 1.0 1 1 15.7 1.3 18 153-170 54-71 (132)
5 1id2_A Amicyanin; beta barrel, 1.0 1 1 15.6 1.3 17 153-169 28-44 (106)
6 1yfn_A Stringent starvation pr 1.0 1 1 15.3 0.2 18 140-160 13-30 (118)
7 3u1d_A Uncharacterized protein 1.0 1 1 15.0 0.2 13 87-99 84-96 (151)
8 1iuz_A Plastocyanin; electron 1.0 1 1 14.7 1.5 16 154-169 13-28 (98)
9 2ov0_A Amicyanin; beta-sandwic 1.0 1 1 14.7 1.3 15 156-170 30-44 (105)
10 1plc_A Plastocyanin; electron 1.0 1 1 14.5 1.5 18 153-170 11-28 (99)
No 1
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=1.00 E-value=1 Score=25.74 Aligned_cols=16 Identities=50% Similarity=0.814 Sum_probs=13.5
Q ss_pred HHHHCCCCCCCCCCCH
Q ss_conf 5420589999998530
Q 029706 124 ALKRSRGRPPGTGRKQ 139 (189)
Q Consensus 124 ~~KRgRGRP~GS~kKq 139 (189)
..||-||||.||.+|.
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 7867777867666567
No 2
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=1.00 E-value=1 Score=24.46 Aligned_cols=15 Identities=40% Similarity=0.891 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 222336999989999
Q 029706 86 PVKKKRGRPRKYAPD 100 (189)
Q Consensus 86 ~~KKKRGRPRKYgpD 100 (189)
..|+|+|||.||-+.
T Consensus 2 a~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 2 ATEPKAGRPSDYMPE 16 (140)
T ss_dssp --------CCSCCTT
T ss_pred CCCCCCCCCCCCCHH
T ss_conf 999999999878999
No 3
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=1.00 E-value=1 Score=15.76 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=10.6
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 45420589999998
Q 029706 123 QALKRSRGRPPGTG 136 (189)
Q Consensus 123 ~~~KRgRGRP~GS~ 136 (189)
+...||||||.|++
T Consensus 120 ~~~~~~~~~~~~~~ 133 (133)
T 1ub1_A 120 PGSGRGRGRPKGSG 133 (133)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 87787778878889
No 4
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=1.00 E-value=1 Score=15.71 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=12.4
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
+..|.|..|+|.+|+-|.
T Consensus 54 ~~~F~P~~i~V~~GdtV~ 71 (132)
T 3c75_A 54 KMKYLTPEVTIKAGETVY 71 (132)
T ss_dssp TTEESSSEEEECTTCEEE
T ss_pred EEEEECCEEEECCCCEEE
T ss_conf 318868989989999999
No 5
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=1.00 E-value=1 Score=15.63 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=9.7
Q ss_pred CCCCCCEEEEECCCCCC
Q ss_conf 65534428994378741
Q 029706 153 GIAFAPHVISIGVGEVC 169 (189)
Q Consensus 153 G~~FTPHVITVnaGEDV 169 (189)
+..|.|..|+|.+|+-|
T Consensus 28 ~~~F~P~~i~V~~G~tV 44 (106)
T 1id2_A 28 KMKYLTPEVTIKAGETV 44 (106)
T ss_dssp TTEESSSEEEECTTCEE
T ss_pred ECEEECCEEEECCCCEE
T ss_conf 36896898998999999
No 6
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=1.00 E-value=1 Score=15.32 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=8.7
Q ss_pred HHHHHCCCCCCCCCCCCCCEE
Q ss_conf 243201211468765534428
Q 029706 140 QLATLGEWMNSSAGIAFAPHV 160 (189)
Q Consensus 140 ql~~lGe~~a~saG~~FTPHV 160 (189)
.+-++=|| -.--+||||+
T Consensus 13 LiRA~yeW---i~DN~~TP~l 30 (118)
T 1yfn_A 13 LLRAFYEW---LLDNQLTPHL 30 (118)
T ss_dssp HHHHHHHH---HHHTTCCEEE
T ss_pred HHHHHHHH---HHCCCCCCEE
T ss_conf 89999999---9708995469
No 7
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=1.00 E-value=1 Score=15.01 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2233699998999
Q 029706 87 VKKKRGRPRKYAP 99 (189)
Q Consensus 87 ~KKKRGRPRKYgp 99 (189)
..+.||||+||--
T Consensus 84 ~~~~rGrP~k~Y~ 96 (151)
T 3u1d_A 84 AKSVDDPPTTFYA 96 (151)
T ss_dssp CTTSSSCCCEEEE
T ss_pred CCCCCCCCCEEEE
T ss_conf 7666799866989
No 8
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=1.00 E-value=1 Score=14.74 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=7.8
Q ss_pred CCCCCEEEEECCCCCC
Q ss_conf 5534428994378741
Q 029706 154 IAFAPHVISIGVGEVC 169 (189)
Q Consensus 154 ~~FTPHVITVnaGEDV 169 (189)
..|.|..|+|.+|+-|
T Consensus 13 ~~F~P~~i~v~~GdtV 28 (98)
T 1iuz_A 13 LAFVPSKISVAAGEAI 28 (98)
T ss_dssp CSEESSEEEECTTCEE
T ss_pred CEEECCEEEECCCCEE
T ss_conf 5795998998999989
No 9
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=1.00 E-value=1 Score=14.70 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 344289943787411
Q 029706 156 FAPHVISIGVGEVCY 170 (189)
Q Consensus 156 FTPHVITVnaGEDVa 170 (189)
|.|..|+|.+|+-|.
T Consensus 30 F~P~~i~v~~Gd~V~ 44 (105)
T 2ov0_A 30 YETPELHVKVGDTVT 44 (105)
T ss_dssp ESSSEEEECTTCEEE
T ss_pred ECCCEEEECCCCEEE
T ss_conf 819989988999999
No 10
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=1.00 E-value=1 Score=14.54 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
+..|.|..|+|.+|+-|.
T Consensus 11 ~~~F~P~~i~v~~G~tV~ 28 (99)
T 1plc_A 11 SLAFVPSEFSISPGEKIV 28 (99)
T ss_dssp CSCEESSEEEECTTCEEE
T ss_pred CCEEECCEEEECCCCEEE
T ss_conf 536908989989999899
Done!