Query 029706
Match_columns 189
No_of_seqs 117 out of 166
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 18:18:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029706.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2328-2331//hhsearch_scop/029706hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1id2a_ b.6.1.1 (A:) Amicyanin 40.7 5.2 0.00038 17.5 1.4 19 152-170 27-45 (106)
2 d2ov0a1 b.6.1.1 (A:1-105) Amic 30.2 9.3 0.00068 16.1 1.3 18 153-170 27-44 (105)
3 d2jxma1 b.6.1.1 (A:1-97) Plast 29.7 9 0.00066 16.2 1.2 18 153-170 13-30 (97)
4 d1pcsa_ b.6.1.1 (A:) Plastocya 27.5 15 0.0011 15.1 2.0 18 153-170 13-30 (98)
5 d1bxua_ b.6.1.1 (A:) Plastocya 26.8 11 0.00079 15.8 1.2 19 152-170 12-30 (91)
6 d1bypa_ b.6.1.1 (A:) Plastocya 20.9 17 0.0012 14.8 1.2 14 154-167 12-25 (99)
7 d2plta_ b.6.1.1 (A:) Plastocya 20.5 24 0.0018 13.9 2.0 19 152-170 11-29 (98)
8 d1nr3a_ d.236.1.1 (A:) DNA-bin 20.4 18 0.0013 14.6 1.3 16 156-171 47-62 (122)
9 d1atia2 d.104.1.1 (A:1-394) Gl 18.4 17 0.0013 14.7 0.8 23 146-168 343-365 (394)
10 d1kdja_ b.6.1.1 (A:) Plastocya 17.8 26 0.0019 13.7 1.6 18 153-170 11-28 (102)
No 1
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}
Probab=40.73 E-value=5.2 Score=17.54 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=14.7
Q ss_pred CCCCCCCEEEEECCCCCCC
Q ss_conf 7655344289943787411
Q 029706 152 AGIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 152 aG~~FTPHVITVnaGEDVa 170 (189)
.+..|.|+.|+|++|+-|.
T Consensus 27 ~~~~F~P~~i~V~~GdtV~ 45 (106)
T d1id2a_ 27 EKMKYLTPEVTIKAGETVY 45 (106)
T ss_dssp ETTEESSSEEEECTTCEEE
T ss_pred CCCEEECCEEEECCCCEEE
T ss_conf 3588959999988999999
No 2
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}
Probab=30.18 E-value=9.3 Score=16.15 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=11.9
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
+.-|+|..|+|++|+-|.
T Consensus 27 ~~~F~P~~i~V~~GdtV~ 44 (105)
T d2ov0a1 27 KMKYETPELHVKVGDTVT 44 (105)
T ss_dssp TTEESSSEEEECTTCEEE
T ss_pred CCEEECCEEEECCCCEEE
T ss_conf 477819999988999999
No 3
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}
Probab=29.72 E-value=9 Score=16.23 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=12.7
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
+..|.|..|+|++|+-|.
T Consensus 13 ~~~F~P~~i~V~~GdtV~ 30 (97)
T d2jxma1 13 APLYEPKALSISAGDTVE 30 (97)
T ss_dssp EEEEESSEEEECTTCEEE
T ss_pred CEEECCCEEEECCCCEEE
T ss_conf 328809999999999999
No 4
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=27.48 E-value=15 Score=15.05 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=12.4
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
...|.|..|+|.+|+-|.
T Consensus 13 ~~~F~P~~i~v~~GdtV~ 30 (98)
T d1pcsa_ 13 ALVFEPSTVTIKAGEEVK 30 (98)
T ss_dssp CSSEESSEEEECTTCEEE
T ss_pred CEEEECCEEEECCCCEEE
T ss_conf 268868999989999899
No 5
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}
Probab=26.85 E-value=11 Score=15.79 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=13.9
Q ss_pred CCCCCCCEEEEECCCCCCC
Q ss_conf 7655344289943787411
Q 029706 152 AGIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 152 aG~~FTPHVITVnaGEDVa 170 (189)
....|.|..|+|++|+-|.
T Consensus 12 g~~~F~P~~i~I~~GdtV~ 30 (91)
T d1bxua_ 12 GMLAFEPSTIEIQAGDTVQ 30 (91)
T ss_dssp SCSSEESSEEEECTTCEEE
T ss_pred CCEEEECCEEEECCCCEEE
T ss_conf 7568879999998999999
No 6
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}
Probab=20.91 E-value=17 Score=14.77 Aligned_cols=14 Identities=50% Similarity=0.845 Sum_probs=6.9
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 55344289943787
Q 029706 154 IAFAPHVISIGVGE 167 (189)
Q Consensus 154 ~~FTPHVITVnaGE 167 (189)
..|.|..|+|++|+
T Consensus 12 ~~F~P~~i~v~~Gd 25 (99)
T d1bypa_ 12 LAFVPSDLSIASGE 25 (99)
T ss_dssp CSEESSEEEECTTE
T ss_pred EEECCCEEEECCCC
T ss_conf 68819999989999
No 7
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=20.46 E-value=24 Score=13.90 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=13.6
Q ss_pred CCCCCCCEEEEECCCCCCC
Q ss_conf 7655344289943787411
Q 029706 152 AGIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 152 aG~~FTPHVITVnaGEDVa 170 (189)
.+..|.|-.|+|++|+-|.
T Consensus 11 g~~~F~P~~i~v~~GdtV~ 29 (98)
T d2plta_ 11 GALEFVPKTLTIKSGETVN 29 (98)
T ss_dssp CCSSEESSEEEECTTCEEE
T ss_pred CCEEEECCEEEECCCCEEE
T ss_conf 8338838989987999999
No 8
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.38 E-value=18 Score=14.60 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=13.4
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 3442899437874110
Q 029706 156 FAPHVISIGVGEVCYT 171 (189)
Q Consensus 156 FTPHVITVnaGEDVa~ 171 (189)
-.|++|+|.+|+|+..
T Consensus 47 ~Ap~~i~i~~GtDl~~ 62 (122)
T d1nr3a_ 47 KSPVRILCRRGDTLDE 62 (122)
T ss_dssp CCCEEEEECCGGGHHH
T ss_pred CCCEEEEECCCCCHHH
T ss_conf 8988999779992888
No 9
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=18.36 E-value=17 Score=14.68 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 21146876553442899437874
Q 029706 146 EWMNSSAGIAFAPHVISIGVGEV 168 (189)
Q Consensus 146 e~~a~saG~~FTPHVITVnaGED 168 (189)
++.-.-+|..|+||||-.+.|=|
T Consensus 343 ~~~d~~~~~~~iPhVIEPS~Gld 365 (394)
T d1atia2 343 AYRDPETGKWFVPYVIEPSAGVD 365 (394)
T ss_dssp CEECSSSCCEECCEEEEEEEEHH
T ss_pred EEECCCCCCEEEEEEEECCCCCC
T ss_conf 78806789078501787588821
No 10
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=17.80 E-value=26 Score=13.72 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 655344289943787411
Q 029706 153 GIAFAPHVISIGVGEVCY 170 (189)
Q Consensus 153 G~~FTPHVITVnaGEDVa 170 (189)
+..|.|-.|+|++|+-|.
T Consensus 11 ~~~F~P~~l~v~~GdtV~ 28 (102)
T d1kdja_ 11 NFKFYPDSITVSAGEAVE 28 (102)
T ss_dssp CCCEESSEEEECTTCCEE
T ss_pred CEEEECCEEEECCCCEEE
T ss_conf 547859999987999999
Done!