Citrus Sinensis ID: 029707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MMSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGYK
Secondary Structure (PSIPRED)
cccccccccccccHHHccccccccccccccccHHHHHHHHccccccccHHHcccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccEEEEccccEEEEccccccHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccHHHHHcccccccccccccccccEEccccccccccccHHHcccccccccEEEEEEEcccccccccccccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mmsatilsssSCNLirssgkqipshpkpflgdGQRILNQLVakrnpsyhafqnkklphrfsVFAVtegsaksseseetipswakpdsdepppwatdegkgltsqgsfeiPFYVYLLTSTITAIAAIGSIFeyvnknpvfgilnsdsifyapllgffaftgfptsafLWFKSVQVANKEAeeqdrrdgyk
Flexible Loop (DISEMBL)
MMSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHafqnkklphrFSVFAVTegsaksseseetipswakpdsdepppWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANkeaeeqdrrdgyk
Low Complexity Region (SEG)
MMSATilsssscnlirssGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLtstitaiaaiGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGYK
Disordered region (IsUnstruct)
**********************************RILNQLVAKRNPSYHAFQNKKLPHRFSVFAV***************************************GSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQV***************
Disordered Region (DISOPRED)
********SSSCNLIRSSGKQIPSHPKPFLGDGQRI*********************HRFSV************************************************FYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQ****************
Disordered Region (DISEMBL)
************NLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAV*********************************KGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVAN*************
Disordered Region (DISPRO)
***ATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHA*Q****PHRFSVFAVTEGS************************************SFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDR*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
225431386	190	PREDICTED: uncharacterized protein LOC10	0.994	0.989	0.693	3e-68
449473313	172	PREDICTED: uncharacterized protein LOC10	0.878	0.965	0.619	2e-57
255575261	176	conserved hypothetical protein [Ricinus	0.925	0.994	0.636	6e-55
224056729	181	predicted protein [Populus trichocarpa]	0.952	0.994	0.638	3e-51
116792022	187	unknown [Picea sitchensis]	0.687	0.695	0.714	4e-49
351723271	177	uncharacterized protein LOC100499876 [Gl	0.798	0.853	0.674	6e-48
388510544	171	unknown [Lotus japonicus]	0.804	0.888	0.603	3e-47
351722993	182	uncharacterized protein LOC100306066 [Gl	0.915	0.950	0.589	1e-46
297816416	182	hypothetical protein ARALYDRAFT_906500 [	0.740	0.769	0.647	6e-45
15230505	181	uncharacterized protein [Arabidopsis tha	0.825	0.861	0.605	1e-44

>gi|225431386|ref|XP_002279284.1| PREDICTED: uncharacterized protein LOC100266100 [Vitis vinifera]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 149/189 (78%), Gaps = 1/189 (0%)

Query: 1   MMSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILN-QLVAKRNPSYHAFQNKKLPHR 59
           M +A++L     NLI SS K+ P HPK F G G +IL+  +  KRN ++   Q   L H+
Sbjct: 1   MAAASLLCLCDTNLIHSSRKESPWHPKLFPGVGHKILDLSVTRKRNRTHPGRQKGNLSHK 60

Query: 60  FSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTST 119
           FSV A TEGSAKS++SEETIPSWA+PDS EPPPWA DEG G  S+ SFEIPFYVYLLTS 
Sbjct: 61  FSVSATTEGSAKSNKSEETIPSWARPDSSEPPPWAQDEGMGNESEKSFEIPFYVYLLTSA 120

Query: 120 ITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEA 179
           +TAIAAIGSIFEY NK PVFG+L+SDSIFYAPLLGFF FTG PTSAFLWFKSVQ ANKEA
Sbjct: 121 VTAIAAIGSIFEYANKRPVFGVLSSDSIFYAPLLGFFVFTGIPTSAFLWFKSVQTANKEA 180

Query: 180 EEQDRRDGY 188
           EEQD+RDGY
Sbjct: 181 EEQDKRDGY 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449473313|ref|XP_004153846.1| PREDICTED: uncharacterized protein LOC101218426 [Cucumis sativus] gi|449490678|ref|XP_004158675.1| PREDICTED: uncharacterized protein LOC101229448 [Cucumis sativus]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 139/192 (72%), Gaps = 26/192 (13%)

Query: 2   MSATILS----SSSCNLIRSSGKQIP-SHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKL 56
           MSAT+LS    S  CN  R   K++   H + F             +RN  Y        
Sbjct: 1   MSATLLSYCNPSLVCNYGRMDLKRMALGHLRSF------------GRRNNGYR------- 41

Query: 57  PHRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLL 116
             + +VFAVTEGSAKSSESEETIPSWAK DS+EPPPWA +EGK + +Q  F++PFYVYLL
Sbjct: 42  --KLTVFAVTEGSAKSSESEETIPSWAKLDSEEPPPWAKEEGKEIGTQQGFQVPFYVYLL 99

Query: 117 TSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVAN 176
            S+ITAIAAIGS+FEYVN+ PVFGI+NSDSI YAPLLGFFA TG PT+AFLWFKSV+VAN
Sbjct: 100 ASSITAIAAIGSVFEYVNQKPVFGIINSDSILYAPLLGFFALTGIPTAAFLWFKSVEVAN 159

Query: 177 KEAEEQDRRDGY 188
           KEAE+QDRRDGY
Sbjct: 160 KEAEDQDRRDGY 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575261|ref|XP_002528534.1| conserved hypothetical protein [Ricinus communis] gi|223532036|gb|EEF33846.1| conserved hypothetical protein [Ricinus communis]

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/187 (63%), Positives = 141/187 (75%), Gaps = 12/187 (6%)

Query: 2   MSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFS 61
           M+A ++   + N+I++S   +        G  +RILN+   K N S      +K   R +
Sbjct: 1   MAAALIIPCNSNIIQASYSTL-------FGVRRRILNKPTGKVNVS-----TRKFCKRLT 48

Query: 62  VFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTIT 121
           VFA TEGSA SS+SEE IP+WAKPDSDEPPPWA DEG G +++ + EIPF+VYLL S IT
Sbjct: 49  VFAATEGSADSSKSEENIPTWAKPDSDEPPPWARDEGSGNSAEQTVEIPFFVYLLASAIT 108

Query: 122 AIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEE 181
           AIAAIGS+FEY N+NPVFGIL SDSIFYAPLLGFFAFTG PTSAFLWFKSVQVANKEAEE
Sbjct: 109 AIAAIGSVFEYANQNPVFGILKSDSIFYAPLLGFFAFTGIPTSAFLWFKSVQVANKEAEE 168

Query: 182 QDRRDGY 188
           QD+RDGY
Sbjct: 169 QDKRDGY 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056729|ref|XP_002298994.1| predicted protein [Populus trichocarpa] gi|118484433|gb|ABK94093.1| unknown [Populus trichocarpa] gi|222846252|gb|EEE83799.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/188 (63%), Positives = 141/188 (75%), Gaps = 8/188 (4%)

Query: 1   MMSATILSSSSCNLIRSSGKQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRF 60
           M +AT+L   + +LI        S  + F+ +     NQ   K   SY+A+Q +K   +F
Sbjct: 1   MAAATLLCWCNSDLIIHG-----SCSRLFVRNKVMDSNQSTVKSRGSYYAYQKQK---KF 52

Query: 61  SVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTI 120
            V A TEGSAKSS+SEETIPSWAKPDSDEPPPWA  EGK  +S+ +FE+PF+VYLL S I
Sbjct: 53  FVCAATEGSAKSSKSEETIPSWAKPDSDEPPPWAKGEGKENSSKQNFEVPFFVYLLASAI 112

Query: 121 TAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAE 180
           TAIAAIGSIFEYVN+ PVFG++N DSIFYAPLLGFFAFTG P SAFLWFKSVQ ANKEAE
Sbjct: 113 TAIAAIGSIFEYVNQRPVFGVVNPDSIFYAPLLGFFAFTGIPFSAFLWFKSVQAANKEAE 172

Query: 181 EQDRRDGY 188
           EQDRRDG+
Sbjct: 173 EQDRRDGF 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792022|gb|ABK26201.1| unknown [Picea sitchensis]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 108/133 (81%), Gaps = 3/133 (2%)

Query: 60  FSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKGLTS---QGSFEIPFYVYLL 116
             V A TEGSAKS  S+  IPSWAKPDSDE PPWA  EGKG T+   + +F+IPFYVYLL
Sbjct: 55  LHVVAATEGSAKSEPSDPKIPSWAKPDSDELPPWARKEGKGQTADPAEPTFQIPFYVYLL 114

Query: 117 TSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVAN 176
           +S I AIAA+GS+FEYVN+ PVFG+LNSDS+FYAPLLGFF FTG PTS FLW KS++ AN
Sbjct: 115 SSAIIAIAAVGSVFEYVNQKPVFGLLNSDSVFYAPLLGFFTFTGIPTSVFLWLKSIEAAN 174

Query: 177 KEAEEQDRRDGYK 189
           K AEEQDRRDGYK
Sbjct: 175 KAAEEQDRRDGYK 187

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723271|ref|NP_001237273.1| uncharacterized protein LOC100499876 [Glycine max] gi|255627331|gb|ACU14010.1| unknown [Glycine max]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 125/166 (75%), Gaps = 15/166 (9%)

Query: 24  SHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIPSWA 83
           SHP  FLG         V K N      + +K PHR  V AVT+GSA+SS+S+E IPSWA
Sbjct: 25  SHPTTFLG---------VPKNNQ-----RKRKTPHRLVVVAVTQGSAESSKSDEKIPSWA 70

Query: 84  KPDSDEPPPWATDEGKGLTSQGS-FEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGIL 142
           KPDSDEPPPWA DE    +SQ   FEIPFY YL  S ITAIAAIGSIFEYVN+ PVFG+L
Sbjct: 71  KPDSDEPPPWARDEPNNNSSQQEGFEIPFYAYLFASAITAIAAIGSIFEYVNQKPVFGVL 130

Query: 143 NSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGY 188
           +SDS+FYAPLLGFF FTG P+SAFLWFKSVQ ANKEAEEQD+RDGY
Sbjct: 131 SSDSVFYAPLLGFFVFTGIPSSAFLWFKSVQAANKEAEEQDKRDGY 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510544|gb|AFK43338.1| unknown [Lotus japonicus]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 119/169 (70%), Gaps = 17/169 (10%)

Query: 21  QIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIP 80
           Q  S P PFLG  Q   ++    R         KK P +  V AVT+      +S+E +P
Sbjct: 18  QHASLPTPFLGVPQ-CQSKFFGIR---------KKPPQKLVVVAVTK------DSDEKVP 61

Query: 81  SWAKPDSDEPPPWATDEGKGLTSQGS-FEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVF 139
           SWAKPDSDEPPPWA DE    T+  S FE+PFYVYLL S ITAIAA+GSIFEYVN+ PVF
Sbjct: 62  SWAKPDSDEPPPWARDEANNKTASSSGFEVPFYVYLLASAITAIAAVGSIFEYVNQKPVF 121

Query: 140 GILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGY 188
           G+L  DS+FYAP+LGFFAFTG P+S FLW+KSVQ ANKEAEEQD+RDGY
Sbjct: 122 GLLPYDSVFYAPVLGFFAFTGIPSSIFLWYKSVQTANKEAEEQDKRDGY 170

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722993|ref|NP_001237007.1| uncharacterized protein LOC100306066 [Glycine max] gi|255627429|gb|ACU14059.1| unknown [Glycine max]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 135/195 (69%), Gaps = 22/195 (11%)

Query: 2   MSATILSSSSCNLIRSSG---KQIPSHPKPFLGDGQRILNQLVAKRNPSYHAFQNKKLPH 58
           M+A+   SSS   +  +G    Q  SHP+ F G   +  NQ            + +K PH
Sbjct: 1   MAASGGCSSSFLTLSCAGAAQNQHASHPRTFFGVPHK--NQ------------RKRKTPH 46

Query: 59  RFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDE-----GKGLTSQGSFEIPFYV 113
           R  V AVT+GSA+SS+S+E IPSWAKPDSDEPPPWA DE           +  FEIPFY 
Sbjct: 47  RLVVVAVTQGSAESSKSDEKIPSWAKPDSDEPPPWARDEPNNKNSNNSQQEEEFEIPFYA 106

Query: 114 YLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQ 173
           YLL S ITAIAAIGSIFEYVN+ PVFG+L+SDS+FYAPLLGFF FTG P+SAFLWFKSVQ
Sbjct: 107 YLLASAITAIAAIGSIFEYVNQRPVFGVLSSDSVFYAPLLGFFVFTGIPSSAFLWFKSVQ 166

Query: 174 VANKEAEEQDRRDGY 188
            ANKEAEEQD++DGY
Sbjct: 167 AANKEAEEQDKKDGY 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816416|ref|XP_002876091.1| hypothetical protein ARALYDRAFT_906500 [Arabidopsis lyrata subsp. lyrata] gi|297321929|gb|EFH52350.1| hypothetical protein ARALYDRAFT_906500 [Arabidopsis lyrata subsp. lyrata]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 114/153 (74%), Gaps = 13/153 (8%)

Query: 46  PSYHAFQNKKLPH----------RFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWAT 95
           P +H    ++  H          R  V A TEGS KS ESE   PSWA PDSDEPPPWA 
Sbjct: 32  PGHHPLAGRRKGHLLHYELTTVRRLVVTAATEGSRKSKESE---PSWANPDSDEPPPWAR 88

Query: 96  DEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPVFGILNSDSIFYAPLLGF 155
           +EG+  TSQ SFE+PFYVYLL S ITAIAAIGS+FEY +KNPVFG+L+SDSIFY P+LGF
Sbjct: 89  NEGRSSTSQESFEVPFYVYLLASAITAIAAIGSVFEYSSKNPVFGVLDSDSIFYTPVLGF 148

Query: 156 FAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGY 188
           FA TG PTS FLWFKSV+ ANKEA+EQD+RDG+
Sbjct: 149 FALTGIPTSVFLWFKSVEAANKEAQEQDKRDGF 181

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230505|ref|NP_190719.1| uncharacterized protein [Arabidopsis thaliana] gi|6572072|emb|CAB63015.1| putative protein [Arabidopsis thaliana] gi|15027917|gb|AAK76489.1| unknown protein [Arabidopsis thaliana] gi|15450643|gb|AAK96593.1| AT3g51510/F26O13_150 [Arabidopsis thaliana] gi|20259289|gb|AAM14380.1| unknown protein [Arabidopsis thaliana] gi|21536487|gb|AAM60819.1| unknown [Arabidopsis thaliana] gi|332645280|gb|AEE78801.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 118/170 (69%), Gaps = 14/170 (8%)

Query: 30  LGDGQRILNQLVAKRN-PSYHAFQNKKLPH----------RFSVFAVTEGSAKSSESEET 78
           L  G    N+   K   P +H    ++  H          R  V A TEGS KS ESE  
Sbjct: 14  LSHGDECCNRSPTKSPFPGHHPLAGRRKGHLLHYERSTVRRLVVTAATEGSKKSKESE-- 71

Query: 79  IPSWAKPDSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEYVNKNPV 138
            PSWA PDSDEPPPWA +EG+  TSQ SFE+PF+VYLL S ITAIAAIGS+FEY +KNPV
Sbjct: 72  -PSWANPDSDEPPPWARNEGRSSTSQESFEVPFFVYLLASAITAIAAIGSVFEYTSKNPV 130

Query: 139 FGILNSDSIFYAPLLGFFAFTGFPTSAFLWFKSVQVANKEAEEQDRRDGY 188
           FGIL SDSIFY P+LGFFA TG PTS FLWFKSV+ ANKEA+EQD+RDG+
Sbjct: 131 FGILESDSIFYTPVLGFFALTGIPTSVFLWFKSVEAANKEAQEQDKRDGF 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2081850	181	AT3G51510 "AT3G51510" [Arabido	0.767	0.801	0.608	3.4e-45

TAIR|locus:2081850 AT3G51510 "AT3G51510" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 90/148 (60%), Positives = 104/148 (70%)

Query:    41 VAKRNPSYHAFQNKKLPHRFSVFAVTEGSAKSSESEETIPSWAKPDSDEPPPWATDEGKG 100
             +A R   +     +    R  V A TEGS KS ESE   PSWA PDSDEPPPWA +EG+ 
Sbjct:    36 LAGRRKGHLLHYERSTVRRLVVTAATEGSKKSKESE---PSWANPDSDEPPPWARNEGRS 92

Query:   101 LTSQGSFEIPFYVYLLXXXXXXXXXXGSIFEYVNKNPVFGILNSDSIFYAPLLGFFAFTG 160
              TSQ SFE+PF+VYLL          GS+FEY +KNPVFGIL SDSIFY P+LGFFA TG
Sbjct:    93 STSQESFEVPFFVYLLASAITAIAAIGSVFEYTSKNPVFGILESDSIFYTPVLGFFALTG 152

Query:   161 FPTSAFLWFKSVQVANKEAEEQDRRDGY 188
              PTS FLWFKSV+ ANKEA+EQD+RDG+
Sbjct:   153 IPTSVFLWFKSVEAANKEAQEQDKRDGF 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       166   0.00097  107 3  11 22  0.42    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  145 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.21u 0.11s 16.32t   Elapsed:  00:00:01
  Total cpu time:  16.21u 0.11s 16.32t   Elapsed:  00:00:01
  Start:  Sat May 11 08:20:06 2013   End:  Sat May 11 08:20:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00