Your job contains 1 sequence.
>029710
MHDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA
KVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT
SHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEA
RKLEQLTHF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029710
(189 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040189 - symbol:AT2G25100 species:3702 "Arabi... 609 2.2e-59 1
MGI|MGI:1916974 - symbol:Rnaseh2a "ribonuclease H2, large... 362 3.2e-33 1
RGD|1307248 - symbol:Rnaseh2a "ribonuclease H2, subunit A... 356 1.4e-32 1
UNIPROTKB|Q5U209 - symbol:Rnaseh2a "Ribonuclease H2 subun... 356 1.4e-32 1
UNIPROTKB|F1SDX8 - symbol:RNASEH2A "Ribonuclease" species... 346 1.6e-31 1
FB|FBgn0031252 - symbol:CG13690 species:7227 "Drosophila ... 343 3.3e-31 1
UNIPROTKB|O75792 - symbol:RNASEH2A "Ribonuclease H2 subun... 343 3.3e-31 1
ZFIN|ZDB-GENE-040426-976 - symbol:rnaseh2a "ribonuclease ... 341 5.4e-31 1
UNIPROTKB|E2RQK5 - symbol:RNASEH2A "Ribonuclease" species... 340 6.9e-31 1
UNIPROTKB|Q2TBT5 - symbol:RNASEH2A "Ribonuclease H2 subun... 339 8.8e-31 1
GENEDB_PFALCIPARUM|PFF1150w - symbol:PFF1150w "ribonuclea... 332 4.9e-30 1
UNIPROTKB|C6KT75 - symbol:PFF1150w "Ribonuclease" species... 332 4.9e-30 1
WB|WBGene00004383 - symbol:rnh-2 species:6239 "Caenorhabd... 293 6.6e-26 1
SGD|S000005016 - symbol:RNH201 "Ribonuclease H2 catalytic... 286 3.6e-25 1
DICTYBASE|DDB_G0292584 - symbol:rnaseh2A "ribonuclease H2... 284 5.9e-25 1
ASPGD|ASPL0000033104 - symbol:AN5114 species:162425 "Emer... 251 1.9e-21 1
CGD|CAL0003240 - symbol:RNH35 species:5476 "Candida albic... 248 1.1e-20 1
UNIPROTKB|G4MNH9 - symbol:MGG_06959 "Ribonuclease" specie... 243 1.3e-20 1
POMBASE|SPAC4G9.02 - symbol:rnh201 "ribonuclease H2 compl... 224 1.4e-18 1
DICTYBASE|DDB_G0277705 - symbol:DDB_G0277705 species:4468... 127 2.6e-07 1
>TAIR|locus:2040189 [details] [associations]
symbol:AT2G25100 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 EMBL:AK117633
EMBL:BT005597 EMBL:AY087961 IPI:IPI00547479 PIR:C84644
RefSeq:NP_565584.1 UniGene:At.39066 ProteinModelPortal:Q9SEZ6
SMR:Q9SEZ6 STRING:Q9SEZ6 PaxDb:Q9SEZ6 PRIDE:Q9SEZ6
EnsemblPlants:AT2G25100.1 GeneID:817048 KEGG:ath:AT2G25100
TAIR:At2g25100 eggNOG:COG0164 HOGENOM:HOG000100290
InParanoid:Q9SEZ6 KO:K10743 OMA:WRTAQTI PhylomeDB:Q9SEZ6
ProtClustDB:CLSN2688398 Genevestigator:Q9SEZ6 GermOnline:AT2G25100
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 Uniprot:Q9SEZ6
Length = 296
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 114/175 (65%), Positives = 134/175 (76%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+ YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ E
Sbjct: 123 EAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVE 182
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
ET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE+D
Sbjct: 183 ETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEAD 242
Query: 135 EMDEDVSSRRSGKRQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 189
E +E+ + S KRQ KLS GF CKFL+ARK++QLT F
Sbjct: 243 E-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>MGI|MGI:1916974 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, large subunit"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 MGI:MGI:1916974 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:AK010292
EMBL:AK146518 EMBL:BC038158 IPI:IPI00229787 RefSeq:NP_081463.1
UniGene:Mm.182470 PDB:3KIO PDB:3P5J PDBsum:3KIO PDBsum:3P5J
ProteinModelPortal:Q9CWY8 SMR:Q9CWY8 STRING:Q9CWY8
PhosphoSite:Q9CWY8 PaxDb:Q9CWY8 PRIDE:Q9CWY8 DNASU:69724
Ensembl:ENSMUST00000109736 Ensembl:ENSMUST00000109738
Ensembl:ENSMUST00000147812 GeneID:69724 KEGG:mmu:69724
UCSC:uc009mok.1 InParanoid:Q9CWY8 ChiTaRS:RNASEH2A
EvolutionaryTrace:Q9CWY8 NextBio:330190 Bgee:Q9CWY8
CleanEx:MM_RNASEH2A Genevestigator:Q9CWY8
GermOnline:ENSMUSG00000052926 Uniprot:Q9CWY8
Length = 301
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 69/136 (50%), Positives = 90/136 (66%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIW 255
Query: 132 ESDEMDEDVSSRRSGK 147
E E +ED R GK
Sbjct: 256 EDSEAEED--PERPGK 269
>RGD|1307248 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA catabolic
process" evidence=ISO;ISS] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 66/128 (51%), Positives = 86/128 (67%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E+ + + ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V W
Sbjct: 196 FVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTW 255
Query: 132 ESDEMDED 139
E +ED
Sbjct: 256 EDSAAEED 263
>UNIPROTKB|Q5U209 [details] [associations]
symbol:Rnaseh2a "Ribonuclease H2 subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 66/128 (51%), Positives = 86/128 (67%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E+ + + ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V W
Sbjct: 196 FVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTW 255
Query: 132 ESDEMDED 139
E +ED
Sbjct: 256 EDSAAEED 263
>UNIPROTKB|F1SDX8 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9823 "Sus scrofa"
[GO:0032299 "ribonuclease H2 complex" evidence=IEA] [GO:0006401
"RNA catabolic process" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
GO:GO:0032299 EMBL:CU914382 RefSeq:NP_001231373.1 UniGene:Ssc.19088
Ensembl:ENSSSCT00000015011 GeneID:100523170 KEGG:ssc:100523170
Uniprot:F1SDX8
Length = 301
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 66/133 (49%), Positives = 86/133 (64%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S K+ +V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTW 255
Query: 132 ESDEMDEDVSSRR 144
E + + R+
Sbjct: 256 EDSQTGDQEGLRK 268
>FB|FBgn0031252 [details] [associations]
symbol:CG13690 species:7227 "Drosophila melanogaster"
[GO:0004523 "ribonuclease H activity" evidence=ISS;NAS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 EMBL:AE014134
GO:GO:0046872 GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 OMA:IAEVYVD
EMBL:BT023255 RefSeq:NP_608521.1 UniGene:Dm.30792
ProteinModelPortal:Q9VPP5 SMR:Q9VPP5 STRING:Q9VPP5 PaxDb:Q9VPP5
PRIDE:Q9VPP5 EnsemblMetazoa:FBtr0078090 GeneID:33213
KEGG:dme:Dmel_CG13690 UCSC:CG13690-RA FlyBase:FBgn0031252
InParanoid:Q9VPP5 OrthoDB:EOG4PC87Q PhylomeDB:Q9VPP5
GenomeRNAi:33213 NextBio:782466 Bgee:Q9VPP5 GermOnline:CG13690
Uniprot:Q9VPP5
Length = 347
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 77/177 (43%), Positives = 98/177 (55%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 189
DE D + + +G + K C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF--------FKGTTKSGEIIREECRFFKQRHLESVMEF 347
>UNIPROTKB|O75792 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex" evidence=IDA]
[GO:0004523 "ribonuclease H activity" evidence=IDA] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=IDA] [GO:0004540 "ribonuclease activity" evidence=TAS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
EMBL:CH471106 GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585
OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:Z97029 EMBL:AK315327
EMBL:BC011748 IPI:IPI00290192 RefSeq:NP_006388.2 UniGene:Hs.532851
PDB:3P56 PDB:3PUF PDBsum:3P56 PDBsum:3PUF ProteinModelPortal:O75792
SMR:O75792 STRING:O75792 PhosphoSite:O75792 PaxDb:O75792
PRIDE:O75792 DNASU:10535 Ensembl:ENST00000221486 GeneID:10535
KEGG:hsa:10535 UCSC:uc002mvg.1 GeneCards:GC19P012918
HGNC:HGNC:18518 HPA:HPA042692 MIM:606034 MIM:610333
neXtProt:NX_O75792 Orphanet:51 PharmGKB:PA38565 InParanoid:O75792
PhylomeDB:O75792 EvolutionaryTrace:O75792 GenomeRNAi:10535
NextBio:39969 Bgee:O75792 CleanEx:HS_RNASEH2A Genevestigator:O75792
GermOnline:ENSG00000104889 Uniprot:O75792
Length = 299
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 66/133 (49%), Positives = 88/133 (66%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 ESDEMDEDVSSRR 144
E D E+ R
Sbjct: 255 E-DSASENQEGLR 266
>ZFIN|ZDB-GENE-040426-976 [details] [associations]
symbol:rnaseh2a "ribonuclease H2, subunit A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 ZFIN:ZDB-GENE-040426-976 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
HOVERGEN:HBG023585 EMBL:BC046061 IPI:IPI00493246 UniGene:Dr.14704
HSSP:Q57599 ProteinModelPortal:Q7ZUZ9 STRING:Q7ZUZ9 PRIDE:Q7ZUZ9
InParanoid:Q7ZUZ9 ArrayExpress:Q7ZUZ9 Bgee:Q7ZUZ9 Uniprot:Q7ZUZ9
Length = 307
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 64/131 (48%), Positives = 87/131 (66%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG AEKYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 138 EVFVDTVGPAEKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++ ++GSGYP DP+TK+WL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDD 257
Query: 134 DEMDEDVSSRR 144
DE D + ++ R
Sbjct: 258 DEEDGEKAAAR 268
>UNIPROTKB|E2RQK5 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9615 "Canis lupus
familiaris" [GO:0032299 "ribonuclease H2 complex" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723
GO:GO:0006401 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 GO:GO:0032299
EMBL:AAEX03012405 RefSeq:XP_003639769.1 ProteinModelPortal:E2RQK5
Ensembl:ENSCAFT00000027175 GeneID:100856442 KEGG:cfa:100856442
NextBio:20858991 Uniprot:E2RQK5
Length = 299
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 66/128 (51%), Positives = 85/128 (66%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWH 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V+W
Sbjct: 196 FVEKLQDLDADYGSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIW 255
Query: 132 ESDEMDED 139
E D + D
Sbjct: 256 E-DSLTGD 262
>UNIPROTKB|Q2TBT5 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9913
"Bos taurus" [GO:0032299 "ribonuclease H2 complex" evidence=ISS]
[GO:0004523 "ribonuclease H activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0005634 GO:GO:0046872 GO:GO:0003723
GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
EMBL:BC109682 IPI:IPI00706063 RefSeq:NP_001033623.1
UniGene:Bt.44367 ProteinModelPortal:Q2TBT5 STRING:Q2TBT5
PRIDE:Q2TBT5 Ensembl:ENSBTAT00000012731 GeneID:512830
KEGG:bta:512830 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 InParanoid:Q2TBT5 OrthoDB:EOG4PNXHM
NextBio:20870572 GO:GO:0032299 Uniprot:Q2TBT5
Length = 299
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 65/124 (52%), Positives = 82/124 (66%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>GENEDB_PFALCIPARUM|PFF1150w [details] [associations]
symbol:PFF1150w "ribonuclease H1 large subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006401 "RNA
catabolic process" evidence=ISS] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0003723 GO:GO:0006401 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 RefSeq:XP_966221.1
ProteinModelPortal:C6KT75 EnsemblProtists:PFF1150w:mRNA
GeneID:3885875 KEGG:pfa:PFF1150w EuPathDB:PlasmoDB:PF3D7_0623900
ProtClustDB:CLSZ2514453 Uniprot:C6KT75
Length = 288
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 66/126 (52%), Positives = 85/126 (67%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WES 133
E N+ FGSGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W
Sbjct: 186 EPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYD 245
Query: 134 DEMDED 139
DE D
Sbjct: 246 DEEGND 251
>UNIPROTKB|C6KT75 [details] [associations]
symbol:PFF1150w "Ribonuclease" species:36329 "Plasmodium
falciparum 3D7" [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
RefSeq:XP_966221.1 ProteinModelPortal:C6KT75
EnsemblProtists:PFF1150w:mRNA GeneID:3885875 KEGG:pfa:PFF1150w
EuPathDB:PlasmoDB:PF3D7_0623900 ProtClustDB:CLSZ2514453
Uniprot:C6KT75
Length = 288
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 66/126 (52%), Positives = 85/126 (67%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WES 133
E N+ FGSGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W
Sbjct: 186 EPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYD 245
Query: 134 DEMDED 139
DE D
Sbjct: 246 DEEGND 251
>WB|WBGene00004383 [details] [associations]
symbol:rnh-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0046872
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 EMBL:AF181619
EMBL:Z66524 RefSeq:NP_495796.1 UniGene:Cel.19550
ProteinModelPortal:Q9U6P6 SMR:Q9U6P6 STRING:Q9U6P6 PaxDb:Q9U6P6
EnsemblMetazoa:T13H5.7 GeneID:266861 KEGG:cel:CELE_T13H5.7
UCSC:T13H5.7 CTD:266861 WormBase:T13H5.7 InParanoid:Q9U6P6
OMA:IAEVYVD NextBio:953296 Uniprot:Q9U6P6
Length = 297
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 64/134 (47%), Positives = 82/134 (61%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W
Sbjct: 132 VVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQ 191
Query: 73 F-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVL 130
F E+ + +GSGYPGDP TK +L +FGF SLVR SW T ++ K V
Sbjct: 192 FREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGS 251
Query: 131 WESDEMDEDVSSRR 144
WE DE + S+R
Sbjct: 252 WEDDEEEGKSQSKR 265
>SGD|S000005016 [details] [associations]
symbol:RNH201 "Ribonuclease H2 catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=IDA] [GO:0004523 "ribonuclease H
activity" evidence=IEA;ISS;IMP;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer"
evidence=IGI;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
SGD:S000005016 Pfam:PF01351 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 EMBL:BK006947 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004523 EMBL:X86470 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GeneTree:ENSGT00390000010768 GO:GO:0032299 OMA:IAEVYVD
OrthoDB:EOG4HMNKD EMBL:Z71348 PIR:S53908 RefSeq:NP_014327.1
ProteinModelPortal:P53942 SMR:P53942 DIP:DIP-4565N IntAct:P53942
MINT:MINT-532801 STRING:P53942 PaxDb:P53942 PeptideAtlas:P53942
EnsemblFungi:YNL072W GeneID:855652 KEGG:sce:YNL072W CYGD:YNL072w
NextBio:979902 Genevestigator:P53942 GermOnline:YNL072W
Uniprot:P53942
Length = 307
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 65/142 (45%), Positives = 86/142 (60%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI-----LVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKL 152
WE MD ++ + K QL+L
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQL 287
>DICTYBASE|DDB_G0292584 [details] [associations]
symbol:rnaseh2A "ribonuclease H2 subunit A"
species:44689 "Dictyostelium discoideum" [GO:0016070 "RNA metabolic
process" evidence=IEA;IC] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=ISS] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0292584 Pfam:PF01351 GenomeReviews:CM000155_GR
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GO:GO:0032299 RefSeq:XP_629507.1 HSSP:O59351
ProteinModelPortal:Q54D13 STRING:Q54D13 EnsemblProtists:DDB0266383
GeneID:8628758 KEGG:ddi:DDB_G0292584 Uniprot:Q54D13
Length = 289
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/144 (40%), Positives = 89/144 (61%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
++YLDTVG +KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F
Sbjct: 130 ELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNF 189
Query: 74 E-----ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-- 126
+ + E + +FGSGYP DP +K WL ++ +FG+P+ +RFSW T + +
Sbjct: 190 DYLNIYDQDEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACF 249
Query: 127 -VEVLWESDEMDEDVSSRRSGKRQ 149
V+ + E+D++ + ++ K++
Sbjct: 250 GVDWVLENDKLKQHFQENQNDKKR 273
>ASPGD|ASPL0000033104 [details] [associations]
symbol:AN5114 species:162425 "Emericella nidulans"
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 EMBL:BN001305
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACD01000088 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 OMA:IAEVYVD OrthoDB:EOG4HMNKD RefSeq:XP_662718.1
ProteinModelPortal:Q5B2W6 STRING:Q5B2W6
EnsemblFungi:CADANIAT00003098 GeneID:2871406 KEGG:ani:AN5114.2
Uniprot:Q5B2W6
Length = 339
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DT+G+ YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L +E
Sbjct: 181 EVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL-DVCYE 239
Query: 75 ETAEN--MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKDIVEVL 130
EN + +GSGYP D + W+ + +FG+ + RFSWGT K +V
Sbjct: 240 VLKENGGVGDGWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTAKEMLEVKGGEKVD 299
Query: 131 WESDE 135
W ++E
Sbjct: 300 WPAEE 304
>CGD|CAL0003240 [details] [associations]
symbol:RNH35 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 CGD:CAL0003240 Pfam:PF01351 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_720885.1 RefSeq:XP_721398.1
RefSeq:XP_888785.1 ProteinModelPortal:Q5AGX6 STRING:Q5AGX6
GeneID:3636987 GeneID:3637501 GeneID:3704096 KEGG:cal:CaO19.13915
KEGG:cal:CaO19.6562 KEGG:cal:CaO19_6562 Uniprot:Q5AGX6
Length = 431
Score = 248 (92.4 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 53/124 (42%), Positives = 74/124 (59%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++
Sbjct: 270 ISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--F 327
Query: 73 FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVE 128
+ E + + GSGYP DP T WL + +FG+ +RFSW T + E
Sbjct: 328 YNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAE 387
Query: 129 VLWE 132
V++E
Sbjct: 388 VVYE 391
>UNIPROTKB|G4MNH9 [details] [associations]
symbol:MGG_06959 "Ribonuclease" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:CM001231 GO:GO:0004523 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_003709705.1 EnsemblFungi:MGG_06959T0
GeneID:2685132 KEGG:mgr:MGG_06959 Uniprot:G4MNH9
Length = 355
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 56/124 (45%), Positives = 73/124 (58%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ ++Y+DTVG YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L
Sbjct: 177 VAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEVLY 236
Query: 69 RGWIFE----ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ + E E E+ +GSGYP D WL + H +FG+ + RFSWGT K
Sbjct: 237 KNVLSEIAKAEGGEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGTV----K 292
Query: 125 DIVE 128
D++E
Sbjct: 293 DMLE 296
>POMBASE|SPAC4G9.02 [details] [associations]
symbol:rnh201 "ribonuclease H2 complex subunit Rnh201
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006261
"DNA-dependent DNA replication" evidence=ISO] [GO:0032299
"ribonuclease H2 complex" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IC] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351
PomBase:SPAC4G9.02 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GO:GO:0032299 OMA:IAEVYVD PIR:T38861 RefSeq:NP_593684.1
ProteinModelPortal:Q10236 STRING:Q10236 EnsemblFungi:SPAC4G9.02.1
GeneID:2541542 KEGG:spo:SPAC4G9.02 OrthoDB:EOG4HMNKD
NextBio:20802639 Uniprot:Q10236
Length = 326
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 55/131 (41%), Positives = 73/131 (55%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L
Sbjct: 174 VTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL---- 229
Query: 73 FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCT------SHFK 124
E E++ N+GSGY D T WL + IFG+ +VR+SW T S +
Sbjct: 230 -ECARESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQ 288
Query: 125 DIVEVLWESDE 135
+E+ W D+
Sbjct: 289 SSIEIDWHEDD 299
>DICTYBASE|DDB_G0277705 [details] [associations]
symbol:DDB_G0277705 species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0277705 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:AAFI02000021 GO:GO:0004523
eggNOG:COG0164 Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 KO:K03470 RefSeq:XP_642511.1
ProteinModelPortal:Q54ZA4 EnsemblProtists:DDB0218016 GeneID:8621159
KEGG:ddi:DDB_G0277705 InParanoid:Q54ZA4 Uniprot:Q54ZA4
Length = 507
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRGW 71
++ +D++ + +KY FP + + KAD + V ASI+AKV RDR W
Sbjct: 241 KIIIDSIEMNTQKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDR----W 296
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ ++ N GSGYP DP T +++ + + +P+ +R SW
Sbjct: 297 M-KQLETNTSHIIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 189 172 0.00093 108 3 11 22 0.37 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 606 (64 KB)
Total size of DFA: 166 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.91u 0.09s 15.00t Elapsed: 00:00:00
Total cpu time: 14.92u 0.09s 15.01t Elapsed: 00:00:00
Start: Mon May 20 23:23:09 2013 End: Mon May 20 23:23:09 2013