BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029710
(189 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464178|ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 137/182 (75%), Positives = 161/182 (88%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N+ + +VY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 116 NMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+ ETAENMHRNFGSGYPGDP TK+WL HKH +FGFP+LVRFSWGTCT++ KDIV
Sbjct: 176 LRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EVLWE+D+++ED S+ R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT
Sbjct: 236 EVLWEADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLT 295
Query: 188 HF 189
F
Sbjct: 296 QF 297
>gi|225464176|ref|XP_002269852.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Vitis vinifera]
Length = 278
Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 137/182 (75%), Positives = 161/182 (88%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N+ + +VY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 97 NMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRA 156
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+ ETAENMHRNFGSGYPGDP TK+WL HKH +FGFP+LVRFSWGTCT++ KDIV
Sbjct: 157 LRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIV 216
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EVLWE+D+++ED S+ R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT
Sbjct: 217 EVLWEADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLT 276
Query: 188 HF 189
F
Sbjct: 277 QF 278
>gi|449468774|ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
Length = 297
Score = 294 bits (753), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 134/182 (73%), Positives = 161/182 (88%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGD EKY+ KLS++FP+IKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 116 SMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W EETAENMHRNFGSGYPGDP TK WL DHKH +FGFP+LVRFSWGTCTS+FKD+V
Sbjct: 176 LREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WESD++DED ++ SGK+QL+LS++G ++SKR+SEEIESSGKGRCKF +ARKLEQL+
Sbjct: 236 EVSWESDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLS 295
Query: 188 HF 189
F
Sbjct: 296 RF 297
>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
Length = 299
Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/182 (75%), Positives = 155/182 (85%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N + QVYLDTVGDAEKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 118 NEGVLLTQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRA 177
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+ EETAE + RNFGSGYPGDPETKAWL HKH +FGFP+LVRFSWGTC S++KD V
Sbjct: 178 LRNWVLEETAEGISRNFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAV 237
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EVLWESD+MDED S +GKRQLKLS G + K +SEEIESSGKGRCKF ++RKLEQL+
Sbjct: 238 EVLWESDKMDEDDSVNSNGKRQLKLSSFGITIPKTKSEEIESSGKGRCKFFQSRKLEQLS 297
Query: 188 HF 189
HF
Sbjct: 298 HF 299
>gi|356536350|ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
Length = 297
Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/183 (74%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ + +VY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR L
Sbjct: 116 MGVLLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAL 175
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
R W+ +ETAENM RNFGSGYPGDP+TK+WL DHKH IFGFPSLVRFSWGTC S+FKD E
Sbjct: 176 REWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAE 235
Query: 129 VLWESDEMDED--VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 186
VLWESD +DED S+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE L
Sbjct: 236 VLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHL 294
Query: 187 THF 189
T+F
Sbjct: 295 TYF 297
>gi|356536352|ref|XP_003536703.1| PREDICTED: ribonuclease H2 subunit A-like isoform 2 [Glycine max]
Length = 278
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 136/183 (74%), Positives = 158/183 (86%), Gaps = 3/183 (1%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ + +VY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR L
Sbjct: 97 MGVLLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAL 156
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
R W+ +ETAENM RNFGSGYPGDP+TK+WL DHKH IFGFPSLVRFSWGTC S+FKD E
Sbjct: 157 REWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAE 216
Query: 129 VLWESDEMDED--VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 186
VLWESD +DED S+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE L
Sbjct: 217 VLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHL 275
Query: 187 THF 189
T+F
Sbjct: 276 TYF 278
>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/182 (74%), Positives = 157/182 (86%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N+ + VY+DTVGD EKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 116 NMGVLLTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+ +ETAENM RNFGSGYPGDPETK+WL H+H +FGFPSLVRFSWGTCTS+ K++V
Sbjct: 176 LRDWVLDETAENMTRNFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV+WESD+ +ED SS SGKRQLKLS G ++SKR+SEEIESSGK RCKF +ARKLEQL
Sbjct: 236 EVVWESDKTEEDGSSSSSGKRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLA 295
Query: 188 HF 189
+F
Sbjct: 296 NF 297
>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
Length = 298
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 151/182 (82%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR
Sbjct: 116 DMGVLLAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA+NMH N GSGYPGDP TK WL DHKH IFGFPSLVRFSWGTCT F D +
Sbjct: 176 LRNWVFDETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAI 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WES+E++ED S S KRQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE +
Sbjct: 236 EVTWESNELEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVR 295
Query: 188 HF 189
F
Sbjct: 296 KF 297
>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
Length = 298
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 151/182 (82%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR
Sbjct: 116 DMGVLLAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA+NMH N GSGYPGDP TK WL DHKH IFGFPSLVRFSWGTCT F D +
Sbjct: 176 LRNWVFDETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAI 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WES+E++ED S S KRQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE +
Sbjct: 236 EVTWESNELEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVR 295
Query: 188 HF 189
F
Sbjct: 296 KF 297
>gi|357160839|ref|XP_003578893.1| PREDICTED: ribonuclease H2 subunit A-like [Brachypodium distachyon]
Length = 299
Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 150/182 (82%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + VY+DTVGD EKY+ KL+++FP I FVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 117 SMGVLLTDVYIDTVGDPEKYRVKLTEKFPGITFVVAKKADSLYPVVSGASIVAKVTRDRA 176
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA+NMH + GSGYPGDP T WL DHKH +FGFP+LVRFSWGTCTS+FK V
Sbjct: 177 LRNWVFDETAQNMHMDTGSGYPGDPNTIQWLKDHKHPVFGFPTLVRFSWGTCTSYFKTGV 236
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WESDE+DED +S S KRQ++LS +GF+ KR+SEEIESSGKGRCKF +ARKLE +
Sbjct: 237 EVTWESDELDEDAASNGSAKRQVRLSSLGFTGFKRKSEEIESSGKGRCKFFQARKLELVR 296
Query: 188 HF 189
F
Sbjct: 297 KF 298
>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
Length = 280
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + + YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR
Sbjct: 100 DMGVLLTEAYLDTVGDPDKYKIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRA 159
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
L+ W+ EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K V
Sbjct: 160 LKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEV 219
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WE+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT
Sbjct: 220 EVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLT 278
Query: 188 HF 189
F
Sbjct: 279 QF 280
>gi|18400719|ref|NP_565584.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|49066054|sp|Q9SEZ6.2|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 296
Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + + YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR
Sbjct: 116 DMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
L+ W+ EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K V
Sbjct: 176 LKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WE+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT
Sbjct: 236 EVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLT 294
Query: 188 HF 189
F
Sbjct: 295 QF 296
>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/182 (69%), Positives = 149/182 (81%), Gaps = 1/182 (0%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + + YLDTVGD EKY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR
Sbjct: 116 DMGVLLTEAYLDTVGDPEKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+ EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K V
Sbjct: 176 LREWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WE+DE +E + S KRQ KLS GF + +RSEEIESSGKGRCKF +ARK++QLT
Sbjct: 236 EVAWEADETEES-GNGSSSKRQAKLSSFGFKTCDKRSEEIESSGKGRCKFFQARKIQQLT 294
Query: 188 HF 189
F
Sbjct: 295 QF 296
>gi|145329613|ref|NP_001077956.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 277
Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + + YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR
Sbjct: 97 DMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRA 156
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
L+ W+ EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K V
Sbjct: 157 LKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEV 216
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WE+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT
Sbjct: 217 EVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLT 275
Query: 188 HF 189
F
Sbjct: 276 QF 277
>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
Length = 297
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 149/182 (81%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 115 DMGVLLAEVYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRA 174
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA NMH GSGYPGD +TK WL DHKH +FGFP+LVRFSWGTCT FKD V
Sbjct: 175 LRNWVFDETALNMHMKTGSGYPGDTDTKQWLQDHKHPVFGFPTLVRFSWGTCTPFFKDAV 234
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WESDE+DED + S KRQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE +
Sbjct: 235 EVTWESDEVDEDGTGNGSTKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVR 294
Query: 188 HF 189
F
Sbjct: 295 KF 296
>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
Length = 297
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 149/182 (81%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 115 DMGILLAEVYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRA 174
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA ++H GSGYPGDP+TK WL DHKH +FGFP+LVRFSWGTC FKD V
Sbjct: 175 LRNWVFDETALSLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAV 234
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WESDE+DED + S KRQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE +
Sbjct: 235 EVTWESDEVDEDGTDNGSTKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVR 294
Query: 188 HF 189
F
Sbjct: 295 KF 296
>gi|413916142|gb|AFW56074.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 297
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 117/182 (64%), Positives = 147/182 (80%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + +VY+DTVGD EKY+ KL+++FP +KFVV+KKADSLYPVVSGASI AKVTRDR
Sbjct: 115 DMGVLLAEVYVDTVGDPEKYRTKLTEKFPGVKFVVAKKADSLYPVVSGASIAAKVTRDRA 174
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
LR W+F+ETA ++H GSGYPGDP+TK WL DHKH +FGFP+LVRFSWGTC FKD V
Sbjct: 175 LRNWVFDETALSLHMRTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAV 234
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
+V WESDE+DE+ + KRQ+KLS +GF+ KR++E+IESSGKGRCKF +ARKLE +
Sbjct: 235 DVTWESDEVDEEGTDNGGAKRQVKLSSLGFTGFKRKTEDIESSGKGRCKFFQARKLELVR 294
Query: 188 HF 189
F
Sbjct: 295 KF 296
>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
Length = 293
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 139/177 (78%), Gaps = 4/177 (2%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ +VY+DTVGDA+KY+ KL ++FP IKFVVSKKADSLYP+VSGASIVAKVTRD LRG
Sbjct: 118 ILLSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRG 177
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 130
W+ +ETAE + RNFGSGYPGDPETKAWL ++KH +FGFP+LVRFSW TC S+ V V+
Sbjct: 178 WVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTAKGVTVI 237
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
WE DE D+ S+ K+QL L+ F + KR+SEE+ESSGKGR KF +RKL+Q+
Sbjct: 238 WEPDEEDK-ASNGGDNKKQLTLN---FPTVKRKSEELESSGKGRFKFFSSRKLQQVN 290
>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
Length = 284
Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 129/181 (71%), Gaps = 14/181 (7%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ + +VY+DTVGD EKY+ KL+++F IKFVV+KKADSLYPV+SGASIVAKVTRDR L
Sbjct: 117 MGVLLAEVYVDTVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRAL 176
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
R W+F+ETA ++H SGY GDP+TK WL DHKH++FGF FKD V+
Sbjct: 177 RNWVFDETALSLHMRTRSGYLGDPDTKRWLEDHKHLVFGF--------------FKDAVD 222
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTH 188
V WESD++D++ KRQ+KL +GF+ KR++EEIES+GKG CKF + KLE +
Sbjct: 223 VTWESDKVDQEEIDSGDTKRQVKLLSLGFTGFKRKTEEIESTGKGCCKFFQVHKLELVRK 282
Query: 189 F 189
F
Sbjct: 283 F 283
>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
Length = 261
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 117/177 (66%), Gaps = 18/177 (10%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ +VY+DTVGDAEKYQA+LS+ FP IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W
Sbjct: 99 LLSEVYVDTVGDAEKYQARLSELFPHIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSW 158
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVL 130
+ +E + RNFGSGYPGDPETKAWL H +FGFPSLVRFSW TC + V V
Sbjct: 159 VMDEAGCAISRNFGSGYPGDPETKAWLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVY 218
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
WE+DE D+ ++S RS + ESSG R F +R+L+Q+T
Sbjct: 219 WEADEDDDTALVKKS-----------------RSAQTESSGALRHSFFRSRQLQQVT 258
>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
Length = 361
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 109/167 (65%), Gaps = 18/167 (10%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ +VY+DTVGDAEKYQA+LS+ FP IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W
Sbjct: 83 LLSEVYVDTVGDAEKYQARLSELFPHIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSW 142
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVL 130
+ +E + RNFGSGYPGDP+TKAWL H +FGFPSLVRFSW TC + V V
Sbjct: 143 VMDEAGCTISRNFGSGYPGDPDTKAWLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVY 202
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKF 177
WE+DE D+ ++S RS + ESSG R F
Sbjct: 203 WEADEDDDTALVKKS-----------------RSAQTESSGALRHSF 232
>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 307
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 116/185 (62%), Gaps = 16/185 (8%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R+ +L F+ +V++DTVGD KYQ L+ +FP I+F VSKKADSL+P+VS ASIVAKVT
Sbjct: 112 RNTLDLGVFLTEVFVDTVGDPGKYQDMLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVT 171
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
RDR LR W+ +ET + R FGSGYPGDPETK WL DH +FGFPSLVRFSW TC +
Sbjct: 172 RDRALRDWVVDETGREVTRGFGSGYPGDPETKTWLEDHVDPVFGFPSLVRFSWATCKPYL 231
Query: 124 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARK 182
K V V WES + DED ++ K +G S R R + E R+
Sbjct: 232 TKGGVFVYWESADDDEDEVEKKH-----KPKHVGEQSCARM----------RHSYFERRQ 276
Query: 183 LEQLT 187
L+Q T
Sbjct: 277 LQQRT 281
>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
Length = 219
Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 89/104 (85%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ + +VY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR
Sbjct: 116 MGVLLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAS 175
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLV 112
R W+ +ETAENM RNFGSGYPGDP+TK+WL DHKH IFGFPSLV
Sbjct: 176 REWVLDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLV 219
>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 123/221 (55%), Gaps = 45/221 (20%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N+ + +V +DTVGD EKY+ KLS+ FP +KFVV+KKA SLYPVVSGASIVAKV
Sbjct: 91 NMGVLLTEVCVDTVGDPEKYRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKVVISHP 150
Query: 68 LRGWIFEETAENMHRNFGSGYPG--DPETKAWL-----------------------TDHK 102
F + G G + K WL H+
Sbjct: 151 FDSLNFR------LQEIGPCEDGYLMKQLKTWLGILDLDTLEFYCCVQILKLKLGWNKHE 204
Query: 103 HIIFGFPSLVRFSWGTCTSHFKDIVEVL--------------WESDEMDEDVSSRRSGKR 148
H +FGFP+LVRFSWGTCT + K++V++L ESD++ ED SS S KR
Sbjct: 205 HSVFGFPTLVRFSWGTCTPYSKNMVDLLNVSCLATFFFLFLSRESDKLVEDGSSSSSRKR 264
Query: 149 QLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
QLK S G ++SKR+SEE ESSGK RCKF RKLEQL +F
Sbjct: 265 QLKSSSFGVTTSKRKSEETESSGKSRCKFFHTRKLEQLANF 305
>gi|384253032|gb|EIE26507.1| ribonuclease HII [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 118/176 (67%), Gaps = 13/176 (7%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVG+A ++QA+L++RFP I+F+V KADSLYP+VS ASIVAKVTRDR ++ +
Sbjct: 174 EVYVDTVGEASRHQARLTERFPGIRFIVCPKADSLYPIVSAASIVAKVTRDRLVKDFSIA 233
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E E + R GSGYPGDP+TKAWL +H +FGFPS+VRFSW T + + V V WE
Sbjct: 234 EKVE-VGRQTGSGYPGDPDTKAWLQEHIDPVFGFPSIVRFSWSTASKILETGAVPVQWEC 292
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE ++D S G++ L F + R++ S+G GR F A KL+++ +F
Sbjct: 293 DE-EQDGS---QGQQVL-----AFGNKPARAQ--VSTGVGRHAFFRAHKLQRVANF 337
>gi|356521108|ref|XP_003529200.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
[Glycine max]
Length = 221
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 81/104 (77%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ + +VY+DT GDA KY+ KL FPSIKFVV+KKADSL P+VSGASIVAKVTRD L
Sbjct: 118 MEVLLTEVYIDTFGDARKYEIKLPNSFPSIKFVVAKKADSLXPIVSGASIVAKVTRDHAL 177
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLV 112
R W+ +ET ENM R FG Y GDP+TK+WL DHKH IFGFPSLV
Sbjct: 178 REWVLDETVENMQRFFGFAYLGDPQTKSWLEDHKHHIFGFPSLV 221
>gi|348520822|ref|XP_003447926.1| PREDICTED: ribonuclease H2 subunit A-like [Oreochromis niloticus]
Length = 308
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+DTVG A+KY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F
Sbjct: 138 EIYVDTVGPADKYEVKLSQRFPGIQVTVRPKADSLFPVVSAASICAKVARDRVVKGWNFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E + ++GSGYP DP+TKAWL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGEVDTDYGSGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLMDSKAVNVHWDD 257
Query: 134 DEMDEDVSSRRSGKRQL 150
DE D + +++R + +
Sbjct: 258 DEEDGEKAAQRQNNKSM 274
>gi|432844392|ref|XP_004065747.1| PREDICTED: ribonuclease H2 subunit A-like [Oryzias latipes]
Length = 306
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+DTVG AEKY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F
Sbjct: 138 EIYVDTVGPAEKYEEKLSQRFPGIEVTVRPKADSLFPVVSAASICAKVARDRVVKGWKFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++ ++GSGYP DP+TKAWL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGDVDADYGSGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDD 257
Query: 134 DEMDEDVSSRRSGKRQL 150
DE D + +++R + +
Sbjct: 258 DEEDGEKAAKRLNNKSM 274
>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGXPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIW 255
Query: 132 ESDEMDEDVSSRRSGK 147
E E +ED R GK
Sbjct: 256 EDSEAEED--PERPGK 269
>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
gi|85541053|sp|Q9CWY8.2|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
Length = 301
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIW 255
Query: 132 ESDEMDEDVSSRRSGK 147
E E +ED R GK
Sbjct: 256 EDSEAEED--PERPGK 269
>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
Length = 301
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIW 255
Query: 132 ESDEMDEDVSSRRSGK 147
E E +ED R GK
Sbjct: 256 EDSEAEED--PERPGK 269
>gi|156542709|ref|XP_001603515.1| PREDICTED: ribonuclease H2 subunit A-like [Nasonia vitripennis]
Length = 350
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 101/180 (56%), Gaps = 14/180 (7%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
F+ ++Y+DTVG EKYQAKL FP IK VV+KKADS YP+VS ASI AKV+RD LR
Sbjct: 184 VFVAEIYVDTVGKPEKYQAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRA 243
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEV 129
W F ET EN +GSGYP DP TK+WL+ + IFGFP LVRFSW T + V V
Sbjct: 244 WQFRET-EN-ESEYGSGYPNDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKILESKAVAV 301
Query: 130 LWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
WE E D + K F+ S +++E S + R F R L T
Sbjct: 302 EWEDPEEDSSAPESKISKY--------FAPSPAKTKE---SARKRHNFFTNRCLTNATTL 350
>gi|344282705|ref|XP_003413113.1| PREDICTED: ribonuclease H2 subunit A-like [Loxodonta africana]
Length = 298
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 91/138 (65%), Gaps = 7/138 (5%)
Query: 3 DRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKV 62
DRS K + QV++DTVG EKYQ +L QRFP I+ V KAD+LYPVVS ASI AKV
Sbjct: 131 DRSVK-----VTQVFVDTVGLPEKYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKV 185
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RD+ +R W F E +++ ++GSGYP DP+TKAWL H IFGFP VRFSW T S
Sbjct: 186 ARDQAVRSWQFVEKLQDVDADYGSGYPNDPKTKAWLKKHVEPIFGFPQFVRFSWRTAQSI 245
Query: 123 FKDIVE-VLWESDEMDED 139
++ E V WE D + ED
Sbjct: 246 LEEEAEGVTWE-DSLAED 262
>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
gi|81889649|sp|Q5U209.1|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
Length = 301
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E+ + + ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V W
Sbjct: 196 FVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTW 255
Query: 132 ESDEMDED 139
E +ED
Sbjct: 256 EDSAAEED 263
>gi|449688727|ref|XP_002166509.2| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 296
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 107/183 (58%), Gaps = 14/183 (7%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R N I ++Y+DTVGDA KYQ KLS+ F I V+ KAD+L+P+VS ASI AKV
Sbjct: 127 RKTINAGANITEMYVDTVGDALKYQNKLSEVFDGISVKVTPKADALFPIVSAASICAKVA 186
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
RDR ++ W F E ++ ++GSGYP DP+TK WL D +FGFP VRFSW TC +
Sbjct: 187 RDRCIQNWQFPEG--DIKEDYGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCANIL 244
Query: 124 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARK 182
K EV+WE DE +E + K+ + ++ F + K+ + I KF RK
Sbjct: 245 EKHACEVMWEDDEAEE------TDKKIIPIT--TFFAQKKNAANISVQPS---KFFLERK 293
Query: 183 LEQ 185
LEQ
Sbjct: 294 LEQ 296
>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
castaneum]
gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
Length = 306
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Query: 1 MHDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 60
M + G NL VY+DTVG EKYQA L FP++ V+KKADS +P+VS ASI A
Sbjct: 136 MALKGGVNLS----HVYVDTVGPPEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICA 191
Query: 61 KVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
KVTRD L+GW F E + H FGSGYPGDP TK +L +++ +FG+P LVRFSW T +
Sbjct: 192 KVTRDYALKGWGFGEGLQAGHEEFGSGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWSTAS 251
Query: 121 SHFKDIVEVLWESDE 135
K+ V WE +E
Sbjct: 252 EALKEAYHVDWEENE 266
>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
gi|11387117|sp|Q9VPP5.1|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
mellifera]
Length = 350
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 101/157 (64%), Gaps = 13/157 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DT+G EKYQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W
Sbjct: 186 ITEIYVDTIGKPEKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQ 245
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLW 131
F E + + +GSGYP DPETK WL+++ +FGFP +VRFSW T + D + V W
Sbjct: 246 FLEGS--ITTEYGSGYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEW 303
Query: 132 ESDEMDEDVSSRRSGKRQL-----KLSDIGFSSSKRR 163
E EM EDV R G++++ K D F S K+R
Sbjct: 304 E--EM-EDV--RNPGEQKISSFFAKSPDKSFKSQKKR 335
>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
Length = 347
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
Length = 347
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|348565231|ref|XP_003468407.1| PREDICTED: ribonuclease H2 subunit A-like [Cavia porcellus]
Length = 298
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG A YQ +L QRFP + V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGLAASYQERLQQRFPDVTVTVKAKADALYPVVSAASICAKVARDQAVKSWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP LVRFSW T + + E V W
Sbjct: 196 FVEKEQDLDADYGSGYPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILETEAENVTW 255
Query: 132 ESDEMDEDVSSRR 144
E ++E SR+
Sbjct: 256 EDSALEEQEGSRK 268
>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
Length = 300
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG AEKYQ KL Q+FP ++ V KADSL+PVVS ASI AKV RDR ++ W
Sbjct: 136 VAEVFVDTVGPAEKYQEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E EN+ ++GSGYP DP+TK WLT +FGFP VRFSW T ++ V V W
Sbjct: 196 FVEALENVDSDYGSGYPNDPKTKEWLTQCLDPVFGFPQFVRFSWSTAQVILENKAVAVRW 255
Query: 132 ESDEMDEDVSSRRS 145
+ E D S +S
Sbjct: 256 DDTEDDPSQKSAQS 269
>gi|354479535|ref|XP_003501965.1| PREDICTED: ribonuclease H2 subunit A-like [Cricetulus griseus]
Length = 302
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E+ +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + + E V W
Sbjct: 196 FVESLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEGVTW 255
Query: 132 ESDEMDED 139
E +ED
Sbjct: 256 EDSAAEED 263
>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
Length = 307
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG AEKYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 138 EVFVDTVGPAEKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++ ++GSGYP DP+TK+WL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDD 257
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
DE D ++ RQ S + + S + SE + R F RKL+ +
Sbjct: 258 DEED----GEKAAARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSIN 305
>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG AEKYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 138 EVFVDTVGPAEKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++ ++GSGYP DP+TK+WL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDD 257
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
DE D ++ RQ S + + S + SE + R F RKL+ +
Sbjct: 258 DEED----GEKAAARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSIN 305
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
Length = 347
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWK 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT+H ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNAFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R L + F
Sbjct: 300 FDEPDSE-KPKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGSVMEF 347
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
Length = 347
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWK 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +L +H ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNAFGSGYPGDPVTKRFLAEHIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + ++ +G + K F + + E I + C+F + R L + F
Sbjct: 300 FDEPDSE-KAKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGNVMDF 347
>gi|351711560|gb|EHB14479.1| Ribonuclease H2 subunit A [Heterocephalus glaber]
Length = 298
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGLPEMYQKRLQQRFPEITVTVKAKADALYPVVSAASICAKVARDQAVKSWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP LVRFSW T + + E V W
Sbjct: 196 FVEKLQDLDADYGSGYPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILEKEAEGVTW 255
Query: 132 ESDEMDEDVSSRR 144
E +E RR
Sbjct: 256 EDSATEEQEGHRR 268
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
Length = 336
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 170 IAEVYVDTVGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWK 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +L ++ ++FGFP LVRFSW T + D + E
Sbjct: 230 FPEGLVIKDNAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAENALVDKAYEM-E 288
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + +S EI+ + C+FL R L +T F
Sbjct: 289 FDEPDSE-KPKYAGAKLTK-----FFNKTTKSGEIK---REECRFLSQRHLGSVTDF 336
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
Length = 347
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 ISEVYVDTVGPPEKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +L +H ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNAFGSGYPGDPVTKRFLAEHIDVVFGFPRLVRFSWSTAENALADKAFDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R L + F
Sbjct: 300 FDEPDTE-KPKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLANVIDF 347
>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG AEKYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 138 EVFVDTVGPAEKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFA 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++ ++GSGYP DP+TK+WL + +FG+P VRFSW T + V V W+
Sbjct: 198 EDLGDVDTDYGSGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDD 257
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
DE D ++ RQ S + + S + SE + R F RKL+ +
Sbjct: 258 DEED----GEKAAARQNNTSVLSYFSRNKPSELTHTRDIHR--FFTERKLKSIN 305
>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
Length = 347
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + +G + K F +S E+ + C+F + R LE + F
Sbjct: 300 FDEPDSQ-KPKYAGTKLTK-----FFKGTTKSGEVT---REECRFFKQRHLENVMEF 347
>gi|380020624|ref|XP_003694182.1| PREDICTED: ribonuclease H2 subunit A-like [Apis florea]
Length = 350
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 13/157 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DTVG EKYQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W
Sbjct: 186 ITEIYVDTVGKPEKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQ 245
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLW 131
F E + + +GSGYP DPETK WL+++ +FGFP +VRFSW T + D + V W
Sbjct: 246 FLEGS--ITTEYGSGYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEW 303
Query: 132 ESDEMDEDVSSRRSGKRQL-----KLSDIGFSSSKRR 163
E EM++ +R G++++ + D F S K+R
Sbjct: 304 E--EMED---ARIPGEQKISSFFARSPDKSFKSQKKR 335
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
Length = 334
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 168 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQ 227
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + D + E
Sbjct: 228 FPEGLLIKDNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALADKAFEM-E 286
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F ++ E++ + C+F + L+ +T F
Sbjct: 287 FDEPDSE-KPKYAGTKLTK-----FFKGTTKTGEVK---REECRFFKQCHLDNVTDF 334
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
Length = 340
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 174 IAEVYVDTVGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWR 233
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + + + E
Sbjct: 234 FPEGLVIKDNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-E 292
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D ++ + +G + K F + + E I + C+F + R L + F
Sbjct: 293 FDEPDSEM-PKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSSVFEF 340
>gi|357625234|gb|EHJ75743.1| hypothetical protein KGM_02725 [Danaus plexippus]
Length = 276
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 79/107 (73%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQA+L + FP IK V+KKADS+YP+VS ASIVAKVTRD L+ W
Sbjct: 110 ITEVYVDTVGPPEKYQARLKEIFPDIKITVAKKADSIYPIVSAASIVAKVTRDHALKVWE 169
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
F E E H++FGSGYPGDP TK ++ + IFG+P LVRFSW T
Sbjct: 170 FPEGLEINHKDFGSGYPGDPLTKKFIREQIDRIFGYPLLVRFSWSTA 216
>gi|449691976|ref|XP_004212862.1| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 127
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 85/124 (68%), Gaps = 3/124 (2%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
+Y+DTVGDA KYQ KLS+ F + V+ KAD+L+P+VS ASI AKV RDR ++GW F E
Sbjct: 1 MYVDTVGDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPE 60
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 134
++ ++GSGYP DP+TK WL D +FGFP VRFSW TC + K EV+WE D
Sbjct: 61 G--DIKEDYGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNILEKHACEVMWEDD 118
Query: 135 EMDE 138
E +E
Sbjct: 119 EAEE 122
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 174 IAEVYVDTVGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWR 233
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +LT+H ++FGFP LVRFSW T + + + E
Sbjct: 234 FPEGLVIKDNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-E 292
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R L + F
Sbjct: 293 FDEPDSE-KPKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSNVFEF 340
>gi|346986447|ref|NP_001231373.1| ribonuclease H2 subunit A [Sus scrofa]
Length = 301
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 90/140 (64%), Gaps = 6/140 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S K+ +V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTW 255
Query: 132 ESDEMDEDVSSRRSGKRQLK 151
E + + + G R++K
Sbjct: 256 EDSQ-----TGDQEGLRKIK 270
>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
gi|20981704|sp|O75792.2|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Aicardi-Goutieres syndrome 4 protein;
Short=AGS4; AltName: Full=RNase H(35); AltName:
Full=Ribonuclease HI large subunit; Short=RNase HI large
subunit; AltName: Full=Ribonuclease HI subunit A
gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 E 132
E
Sbjct: 255 E 255
>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 138 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 197
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 198 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 257
Query: 132 E 132
E
Sbjct: 258 E 258
>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 91/139 (65%), Gaps = 6/139 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 ESDEMDEDVSSRRSGKRQL 150
E + S + G R++
Sbjct: 255 E-----DSASENQEGLRKI 268
>gi|405952554|gb|EKC20351.1| Ribonuclease H2 subunit A [Crassostrea gigas]
Length = 299
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVGD EKYQAKL FP+I+ V+KKADSLYP+VS ASI AKV RDR L W
Sbjct: 136 IAEVYVDTVGDPEKYQAKLRNLFPNIQITVAKKADSLYPIVSAASICAKVCRDRALSKWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F+E +GSGYPGDP+TK +L+D +FGFP VRF W T + K V+V W
Sbjct: 196 FQEKITVHEDGYGSGYPGDPKTKRFLSDSMDKVFGFPQFVRFGWSTASVMLQKSAVDVQW 255
>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
Length = 299
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 91/139 (65%), Gaps = 6/139 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 ESDEMDEDVSSRRSGKRQL 150
E + S + G R++
Sbjct: 255 E-----DSASENQEGLRKI 268
>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
Length = 308
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 106/175 (60%), Gaps = 11/175 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
QVY+DTVGDA+++ +LS+ FP I F V KADSLYP+VS ASI+AKV RD++L I
Sbjct: 140 QVYVDTVGDADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSL---IDC 196
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWE 132
A + G+GYPGD T AWL +H H + GFP LVR SW TC + + + V +E
Sbjct: 197 RQALGLQGEVGTGYPGDATTVAWLKEHIHPVLGFPPLVRHSWETCARMLEPPEAISVNFE 256
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
+D+ + + + S +++L G + +E+SG GR F +RKL+++
Sbjct: 257 ADDAADGLGTSGSSQQRLNFVRPGGAGV------VETSGLGRHTFFRSRKLQRVA 305
>gi|397487580|ref|XP_003814870.1| PREDICTED: ribonuclease H2 subunit A [Pan paniscus]
gi|426387370|ref|XP_004060142.1| PREDICTED: ribonuclease H2 subunit A [Gorilla gorilla gorilla]
Length = 299
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 ESDEMDED 139
E D ED
Sbjct: 255 E-DSASED 261
>gi|440800045|gb|ELR21088.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVGD +YQ LS++FP + VSKKADSL+P+VS ASIVAKV RD+ LR W F+
Sbjct: 121 EVYVDTVGDPGRYQENLSRKFPRLAITVSKKADSLFPIVSAASIVAKVIRDQCLRTWKFK 180
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWE 132
E R FGSGYP DP TK WL +FG+P+L+RFSW T + + D V WE
Sbjct: 181 EKGVEFSREFGSGYPADPFTKQWLEGSLDKLFGYPTLIRFSWATTDNMLEDHDAHAVAWE 240
Query: 133 SDEMDE 138
+D D+
Sbjct: 241 ADVNDD 246
>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
Length = 385
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +V++DTVG AE YQ KLS+RFP I+F VS KADSL+P+VS ASI AKV RD L W
Sbjct: 217 IAKVFVDTVGTAETYQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQ 276
Query: 73 FEET-AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVL 130
F E + R+FG GYP DP TK WL + +FGFP +VRFSWGTC + D V V
Sbjct: 277 FSEPHGSTIGRDFGCGYPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILIDRAVNVT 336
Query: 131 W 131
W
Sbjct: 337 W 337
>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
Length = 299
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L +RFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGPPETYQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWH 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F ET +++ ++GSGYP DP+TK WL H +FGFP VRFSW T S + E VLW
Sbjct: 196 FVETLQDLDADYGSGYPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVLW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
Length = 339
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 173 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQ 232
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 233 FPEGLIIKDNAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYDM-E 291
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F ++ E++ + C+F + L+ +T F
Sbjct: 292 FDEPDSE-KPKYAGTKLTK-----FFKGTTKTGEVK---REECRFFKQCHLDNVTEF 339
>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
Length = 299
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 16/177 (9%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+DTVG AE YQ KLS+ FP I V+ KAD+L+P VS ASI+AKVTRD+ L W F
Sbjct: 137 EIYVDTVGVAENYQNKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNWKFP 196
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWES 133
E ++G GYP DP T+ WL + +FG+P VRFSW TC + V V WE
Sbjct: 197 EDESYNSSDYGCGYPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKILDESAVRVHWED 256
Query: 134 D-EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
D E D D + +S + F + K ++ R FLE+RKL+Q+ F
Sbjct: 257 DEEFDNDNT----------VSLLSFFTQKG----VQEKAVKRHNFLESRKLKQVVKF 299
>gi|402904417|ref|XP_003915042.1| PREDICTED: ribonuclease H2 subunit A [Papio anubis]
gi|355703198|gb|EHH29689.1| Ribonuclease H2 subunit A [Macaca mulatta]
gi|380808814|gb|AFE76282.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|383415189|gb|AFH30808.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|384944794|gb|AFI36002.1| ribonuclease H2 subunit A [Macaca mulatta]
Length = 300
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 255
Query: 132 ESDEMDED 139
E D ED
Sbjct: 256 E-DSTPED 262
>gi|346466461|gb|AEO33075.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG EKYQ KL FP IK V+KKAD+ YP+VS ASI AKV RDR +R W
Sbjct: 170 VAEVYVDTVGPPEKYQKKLEDCFPGIKVTVAKKADATYPIVSAASICAKVARDRAIRSWQ 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E + ++GSGYP DP TK +L ++ ++FGFP +VRFSW T +D ++W
Sbjct: 230 FPEGIDVKPEDYGSGYPNDPVTKKFLAENTDLVFGFPGIVRFSWSTAEKLLEDHAAPIVW 289
Query: 132 ESDEMDEDVSSRRSGKRQLK 151
DE DE+ + +++G ++
Sbjct: 290 --DEEDEEGAGKQNGMASIQ 307
>gi|194213064|ref|XP_001495257.2| PREDICTED: ribonuclease H2 subunit A-like [Equus caballus]
Length = 299
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KADSLYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGMPETYQQRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S K+ +V+W
Sbjct: 196 FVEKLQDSDTDYGSGYPNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSILEKEAEDVVW 255
Query: 132 ESDEMDED 139
+ D + ED
Sbjct: 256 D-DSVAED 262
>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
gi|410226906|gb|JAA10672.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410251426|gb|JAA13680.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410287834|gb|JAA22517.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410328555|gb|JAA33224.1| ribonuclease H2, subunit A [Pan troglodytes]
Length = 299
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 7/138 (5%)
Query: 2 HDRSGKNLHFFIFQ------VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSG 55
HD + + + ++Q V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS
Sbjct: 118 HDTATGLIQYALYQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSA 177
Query: 56 ASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFS 115
ASI AKV RD+ ++ W F E ++ ++GSGYP DP+TKAWL +H +FGFP VRFS
Sbjct: 178 ASICAKVARDQAVKKWQFVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFS 237
Query: 116 WGTCTSHF-KDIVEVLWE 132
W T + K+ +V+WE
Sbjct: 238 WRTAQTILEKEAEDVIWE 255
>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A [Nomascus leucogenys]
Length = 299
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 ESDEMDED 139
E D ED
Sbjct: 255 E-DSAPED 261
>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
dendrobatidis JAM81]
Length = 290
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 87/123 (70%), Gaps = 5/123 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
I +VY+DTVG E YQAKL++RFP I K VVSKKADSL+P+VS ASI AKVTRD L W
Sbjct: 169 IQEVYVDTVGSPESYQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNW 228
Query: 72 IFEETA-ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VE 128
F E ++ R FGSGYP DP+T AWL H +FGFP +VRFSW T T+ ++ V+
Sbjct: 229 EFVEPGIDSTQRAFGSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWST-TAKLLEMQGVD 287
Query: 129 VLW 131
VLW
Sbjct: 288 VLW 290
>gi|355755510|gb|EHH59257.1| Ribonuclease H2 subunit A [Macaca fascicularis]
Length = 325
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 161 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWK 220
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 221 FVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 280
Query: 132 ESDEMDED 139
E D ED
Sbjct: 281 E-DSTPED 287
>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
gi|110816412|sp|Q2TBT5.1|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
gi|296485915|tpg|DAA28030.1| TPA: ribonuclease H2 subunit A [Bos taurus]
gi|440902072|gb|ELR52915.1| Ribonuclease H2 subunit A [Bos grunniens mutus]
Length = 299
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
Length = 342
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 176 IAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQ 235
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP TK +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 236 FPEGLVIKDNAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYEM-E 294
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F +S E++ + C+ + L+ +T F
Sbjct: 295 FDEPDTE-KPKYAGTKLTK-----FFKGTTKSGEVK---REECRLFKQCHLDNVTDF 342
>gi|426228912|ref|XP_004008539.1| PREDICTED: ribonuclease H2 subunit A [Ovis aries]
Length = 299
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii 17XNL]
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
Length = 307
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E N+ + FGSGYPGDP TK +L ++ IFGFPS+VRFSW T + +++ E + D
Sbjct: 186 EQIINIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYD 245
Query: 135 EMDEDVSSRRSGKRQL 150
E E+ ++ ++ KR++
Sbjct: 246 E--EESNNSKAMKRKI 259
>gi|359322070|ref|XP_003639769.1| PREDICTED: ribonuclease H2 subunit A-like [Canis lupus familiaris]
Length = 299
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWH 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V+W
Sbjct: 196 FVEKLQDLDADYGSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
Length = 303
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 87/141 (61%), Gaps = 7/141 (4%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
SG NL +VY+DTVGDA KYQ KL FP + V+ KAD+ +P+VS ASI AKV R
Sbjct: 132 SGVNLQ----EVYVDTVGDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVAR 187
Query: 65 DRTLRGWIF--EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
DR ++GW F E+ + R FGSGYP DPETK WL +FGFP VRFSW T +
Sbjct: 188 DRAVKGWTFFEEKDGNTISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKI 247
Query: 123 FKD-IVEVLWESDEMDEDVSS 142
D V V W+ ++ DE ++
Sbjct: 248 LDDKAVPVNWDDEDEDEKAAT 268
>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
Length = 211
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG AEKYQ KL Q+FP ++ V KADSL+P VS ASI AKV RDR ++ W
Sbjct: 47 LAEVFVDTVGPAEKYQEKLKQQFPELEVTVRAKADSLFPTVSAASICAKVARDRIVKNWK 106
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E E+ ++GSGYP DP+TK WL + IFG+P VRFSW T + V V W
Sbjct: 107 FLENLEDTEMDYGSGYPNDPKTKEWLAQNLDPIFGYPQFVRFSWSTAQLILESKAVPVHW 166
Query: 132 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
+ ED S++S K L S SKR +F RKLE +T
Sbjct: 167 DD---TEDGPSQQSAKSLLSYFTRKVSPSKRTPH----------RFFYERKLETVT 209
>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
Length = 307
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 7/143 (4%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R +L I V++DTVG EKYQAKLS FP IK VSKKADSL+PVVS ASI AKV
Sbjct: 129 RKALSLEANITSVFVDTVGPPEKYQAKLSALFPGIKITVSKKADSLFPVVSAASICAKVA 188
Query: 64 RDRTLRGWIFEET------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
RD+ L W F+E+ AE+ +GSGYPGDP TK +L + +FGFP LVRFSW
Sbjct: 189 RDKALSTWKFKESPFISLKAESQELKWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWS 248
Query: 118 TCTSHFKDI-VEVLWESDEMDED 139
T K V V WE E E+
Sbjct: 249 TSEQILKTKGVTVEWEDTEEQEN 271
>gi|403302260|ref|XP_003941780.1| PREDICTED: ribonuclease H2 subunit A [Saimiri boliviensis
boliviensis]
Length = 300
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TK WL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIW 255
Query: 132 ESDEMDED 139
E D ED
Sbjct: 256 E-DSAPED 262
>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
Length = 300
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TK WL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVEKLQDSDTDYGSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 255
Query: 132 ESDEMDED 139
E D ED
Sbjct: 256 E-DSTPED 262
>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
Length = 288
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E N+ + FGSGYPGDP TK +L ++ IFGFPS+VRFSW T + +++ E + D
Sbjct: 186 EHIINIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYD 245
Query: 135 EMDEDVSSRRSGKRQL 150
E E+ ++ ++ KR++
Sbjct: 246 E--EESNNSKAMKRKI 259
>gi|355716672|gb|AES05686.1| ribonuclease H2, subunit A [Mustela putorius furo]
Length = 299
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGPPETYQEQLQQHFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWH 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E + + ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E VLW
Sbjct: 196 FVEDLQGLDADYGSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILETEAEGVLW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KA +LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 E 132
E
Sbjct: 255 E 255
>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
Length = 299
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ + +W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDGIW 254
Query: 132 E 132
E
Sbjct: 255 E 255
>gi|410950548|ref|XP_003981966.1| PREDICTED: ribonuclease H2 subunit A [Felis catus]
Length = 299
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG + YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWH 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E + + ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V+W
Sbjct: 196 FVEKLQGLDADYGSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVMW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|428176594|gb|EKX45478.1| ribonuclease H2 large subunit [Guillardia theta CCMP2712]
Length = 241
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 93/140 (66%), Gaps = 20/140 (14%)
Query: 10 HFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+F + +V++DTVGD E+Y++KLS FPSI+F V KKADSL+PVVS ASI AKVTRDR +R
Sbjct: 102 NFNLKKVFVDTVGDPERYESKLSSLFPSIEFAVRKKADSLFPVVSAASICAKVTRDRCVR 161
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 129
W F+ET + ++GSGYP +P+ +FG+P LVRFSW T K I+E
Sbjct: 162 DWQFKETGVSFSTDYGSGYPSEPQ-----------VFGYPDLVRFSWSTT----KKIIET 206
Query: 130 L-----WESDEMDEDVSSRR 144
WE+DEM+ED S +
Sbjct: 207 QGESFEWEADEMEEDQSQSK 226
>gi|344244502|gb|EGW00606.1| Ribonuclease H2 subunit A [Cricetulus griseus]
Length = 312
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 77/106 (72%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E+ +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T
Sbjct: 196 FVESLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241
>gi|432095927|gb|ELK26843.1| Ribonuclease H2 subunit A [Myotis davidii]
Length = 299
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGMPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL + +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKNVEPVFGFPQFVRFSWRTAQSILEKEAEGVTW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|383859304|ref|XP_003705135.1| PREDICTED: ribonuclease H2 subunit A-like [Megachile rotundata]
Length = 334
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 3/125 (2%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
++ ++Y+DTVG EKYQA+L + FP IK V+KKADS YP+VS ASI AKV+RD +R W
Sbjct: 169 WVSEIYVDTVGKPEKYQARLEEIFPGIKITVAKKADSTYPIVSAASICAKVSRDHAIRAW 228
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVL 130
F E + + + +GSGYP DPETK WL ++ +FGFP +VRFSW T ++ + V
Sbjct: 229 QFREGS--VGKAYGSGYPNDPETKNWLIENVDPVFGFPRIVRFSWSTAEKILEEKALSVE 286
Query: 131 WESDE 135
WE E
Sbjct: 287 WEDTE 291
>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
Length = 288
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 99/157 (63%), Gaps = 9/157 (5%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWES 133
E N+ FGSGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W
Sbjct: 186 EPIINIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYD 245
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 170
DE D ++ KR+ I F SK +S I+ S
Sbjct: 246 DEEGND---SKALKRK-----IPFDYSKFKSPYIKRS 274
>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
Length = 353
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG E YQA+L FP IK VV+KKAD+ YP+VS ASI AKVTRD +R W
Sbjct: 188 VAEIYVDTVGKPESYQARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWR 247
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E EN+ +GSGYP DP TK WL+ + +FGFP LVRFSW T
Sbjct: 248 FRE-GENIETQYGSGYPTDPVTKKWLSTNVDRVFGFPQLVRFSWST 292
>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
Length = 254
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T +
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQA 244
>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A [Pongo
abelii]
Length = 313
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 148 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 207
Query: 73 F-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVL 130
F E+ ++ + ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K +V+
Sbjct: 208 FVEKLQDSXYTDYGSGYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKGAEDVI 267
Query: 131 WESDEMDED 139
WE D ED
Sbjct: 268 WE-DSAPED 275
>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
Length = 286
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DT G E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTGGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A [Callithrix jacchus]
Length = 278
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 83/125 (66%), Gaps = 2/125 (1%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V++DTVG E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E
Sbjct: 117 VFVDTVGMPETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVE 176
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 134
+++ ++GSGYP DP+TK WL +H +FGFP VRFSW T + K+ +V+WE D
Sbjct: 177 KLQDLDTDYGSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIWE-D 235
Query: 135 EMDED 139
ED
Sbjct: 236 SAPED 240
>gi|431898011|gb|ELK06718.1| Microtubule-associated serine/threonine-protein kinase 1 [Pteropus
alecto]
Length = 1773
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 79/118 (66%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQCFPDIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 130
F E +++ ++GSGYP DP+TKAWL H IFGFP VRFSW T S + EV+
Sbjct: 196 FVEKLQDLDIDYGSGYPNDPKTKAWLRKHVEPIFGFPQFVRFSWRTAQSILEKEAEVV 253
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus]
Length = 325
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QVY+DTVG EKYQ KL FP IK V+KKAD+ YP+VS ASI AKV RD ++ W
Sbjct: 159 VTQVYVDTVGPPEKYQEKLQALFPDIKVTVAKKADATYPIVSAASICAKVARDHAIQSWE 218
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E +GSGYP DP TK +L ++ +FGFPSLVRFSW T +D V+W
Sbjct: 219 FPEGINVKAEEYGSGYPNDPVTKKFLLENMDTVFGFPSLVRFSWSTAEKLLEDNAAAVMW 278
Query: 132 ESDEMDEDVSSRRSGKRQLK 151
DE+ ++ +SG ++
Sbjct: 279 -----DEEDNAEQSGMASIQ 293
>gi|395850804|ref|XP_003797965.1| PREDICTED: ribonuclease H2 subunit A [Otolemur garnettii]
Length = 300
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L Q FP IK V KADSLY VVS ASI AKV RD+ +R W
Sbjct: 136 VSQVFVDTVGMPETYQKRLQQCFPGIKVTVKAKADSLYSVVSAASICAKVARDQAVRNWR 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E ++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVERLQDFDADYGSGYPNDPKTKAWLKKHVEPVFGFPQFVRFSWRTAMAILEKEAEDVVW 255
Query: 132 E 132
E
Sbjct: 256 E 256
>gi|442754225|gb|JAA69272.1| Putative ribonuclease hi [Ixodes ricinus]
Length = 357
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG EKYQAKL FP IK V+KKAD +P+VS ASI AKV RDR ++ W
Sbjct: 136 VTEVYVDTVGPPEKYQAKLQDTFPDIKITVAKKADPTFPIVSAASICAKVARDRAIQTWR 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E +GSGYP DP TK +L H +FGFPSLVRFSW T +D V W
Sbjct: 196 FPEGLNFNPEEYGSGYPNDPATKKFLAAHVDNVFGFPSLVRFSWSTAEKLLEDNAATVSW 255
Query: 132 ESD 134
+ D
Sbjct: 256 DED 258
>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
Length = 301
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 84/134 (62%), Gaps = 8/134 (5%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
SG NL +VY+DTVGDA KYQ KL FP + V+ KAD+ +P+VS ASI AKV R
Sbjct: 132 SGVNLQ----EVYVDTVGDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVAR 187
Query: 65 DRTLRGWIF--EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
DR ++GW F E+ ++ R FGSGYP DPETK WL +FGFP VRFSW T +
Sbjct: 188 DRAVKGWTFFEEKDGNSISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKI 247
Query: 123 FKD-IVEVLWESDE 135
D V V W SDE
Sbjct: 248 LDDKAVPVNW-SDE 260
>gi|443699951|gb|ELT99170.1| hypothetical protein CAPTEDRAFT_183401 [Capitella teleta]
Length = 317
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 2/130 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG EKYQAKL + FP +K V+KKAD+ YP+VS ASI AKV+RD ++ W F
Sbjct: 152 EVFVDTVGMPEKYQAKLERIFPELKITVAKKADATYPIVSAASICAKVSRDHAVKSWNFI 211
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE- 132
E + +++GSGYPGD ETK +L++ +FGFP VRFSW T ++ V V WE
Sbjct: 212 EGRDYAGKSYGSGYPGDSETKNFLSESMDPVFGFPQFVRFSWSTASNILDAKAVTVEWED 271
Query: 133 SDEMDEDVSS 142
DEM +DV S
Sbjct: 272 DDEMPDDVKS 281
>gi|340729627|ref|XP_003403099.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus terrestris]
Length = 334
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DTVG +KYQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W
Sbjct: 170 ITEIYVDTVGVPQKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQ 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E E + +GSGYP DP+TK WL+++ +FGFP +VRFSW T
Sbjct: 230 FRE--ELITTEYGSGYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
Length = 337
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG E YQA+L FP +K VV+KKADS YP+VS ASI AKV+RD +R W
Sbjct: 170 VAEVYVDTVGKPETYQARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWR 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLW 131
F E +GSGYP DP TK WL+ + +FGFP LVRFSW T + + + V W
Sbjct: 230 FREVDVAFPSEYGSGYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQILQSNALAVEW 289
Query: 132 ESDE 135
E E
Sbjct: 290 EESE 293
>gi|350411556|ref|XP_003489389.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus impatiens]
Length = 334
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DTVG +KYQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W
Sbjct: 170 ITEIYVDTVGVPQKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQ 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E E + +GSGYP DP+TK WL+++ +FGFP +VRFSW T
Sbjct: 230 FRE--ELITTEYGSGYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
intestinalis]
Length = 292
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 103/187 (55%), Gaps = 22/187 (11%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
RS L + +VY+DTVG + Y KL + FPSIKF V KKADS YPVVS ASI AKV
Sbjct: 127 RSALKLGVEVTEVYVDTVGPPQTYAEKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVC 186
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
RD+ ++ W F E + + +GSGYP DP TK WL ++ IFGFPS VRFSW T +
Sbjct: 187 RDKAVKEWRFRENPDTDTK-YGSGYPADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKLL 245
Query: 124 KD-IVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARK 182
++ V V W D DE+ SS++ + G R +F K
Sbjct: 246 ENEAVPVHWADD--DEE------------------SSNEPITSYFSKKGNSRHQFFTENK 285
Query: 183 LEQLTHF 189
++++T+F
Sbjct: 286 MKRVTNF 292
>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
kowalevskii]
Length = 303
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVGDA KYQA L + FP ++ V+ KAD+ +P+VS ASI AKV RDR ++ W
Sbjct: 138 IKEVYVDTVGDASKYQAYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSWQ 197
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E E +GSGYP DP TK WL++ +FGFP VRFSW T ++ V V W
Sbjct: 198 FPEFDEINETPYGSGYPNDPATKQWLSNVMEPVFGFPRFVRFSWSTADKILEEKAVPVYW 257
Query: 132 ESDE 135
+ DE
Sbjct: 258 DDDE 261
>gi|49115760|gb|AAH73515.1| LOC443655 protein, partial [Xenopus laevis]
Length = 305
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W
Sbjct: 139 LTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWK 198
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E + ++GSGYP DP+TK WL+ H +FG+P VRFSW T + + +
Sbjct: 199 FVEDLGELDADYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAW 258
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D+ + S L FS+ K S+ +F + R L+ L F
Sbjct: 259 GDEDDDSAGGKSSTPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 305
>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 99/175 (56%), Gaps = 11/175 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V+LDTVG AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F
Sbjct: 138 EVFLDTVGPAEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFV 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E + +GSGYP DP+TK WL+ H +FG+P VRFSW T + + + D
Sbjct: 198 EDLGDPDAEYGSGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGD 257
Query: 135 EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
E D+ SG + S + F S+ + + + +S +F + R L+ L F
Sbjct: 258 EDDD------SGGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
Length = 302
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W
Sbjct: 136 LTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E + ++GSGYP DP+TK WL+ H +FG+P VRFSW T + + +
Sbjct: 196 FVEDLGELDADYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAW 255
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D+ + S L FS+ K S+ +F + R L+ L F
Sbjct: 256 GDEDDDSAGGKSSTPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 302
>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 99/175 (56%), Gaps = 11/175 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V+LDTVG AEKYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F
Sbjct: 138 EVFLDTVGPAEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKEWKFV 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E + +GSGYP DP+TK WL+ H +FG+P VRFSW T + + + D
Sbjct: 198 EDLGDPDAEYGSGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGD 257
Query: 135 EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
E D+ SG + S + F S+ + + + +S +F + R L+ L F
Sbjct: 258 EDDD------SGGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
H]
Length = 288
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL++ FP IK V +KADSLYPVVS ASI AKVTRD ++ W +E
Sbjct: 126 EVFVDTVGKANVYEEKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E N+ + FGSGYPGDP TK +L ++ +FGFPS+VRFSW T +++E + +
Sbjct: 186 EPLVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPSIVRFSWSTAD----NMLETMGDQI 241
Query: 135 EMDEDVSSR--RSGKRQL 150
E +D+ + R+ KR++
Sbjct: 242 EWYDDIENNDSRAIKRKM 259
>gi|348677951|gb|EGZ17768.1| hypothetical protein PHYSODRAFT_545238 [Phytophthora sojae]
Length = 809
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+V++DTVGD YQ+ L++ F +I+F V KKADSL+ VVS ASI AKVTRDR + W +
Sbjct: 107 KVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWKW 166
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
E A + +FGSGYP DP+TKAWLT H +F FP+++RFSWGT F+ V+V W
Sbjct: 167 ESPALDFPTDFGSGYPSDPKTKAWLTTHMDQVFVFPNIIRFSWGTVEPFFEKAVKVEWPH 226
Query: 134 DE 135
D+
Sbjct: 227 DK 228
>gi|395513066|ref|XP_003760751.1| PREDICTED: ribonuclease H2 subunit A [Sarcophilus harrisii]
Length = 307
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG A+KYQ KL +RFP ++ V KADSL+PVVS ASI AKV RD ++ W
Sbjct: 136 VTQVFVDTVGPADKYQQKLKERFPEVEVTVRPKADSLFPVVSAASICAKVARDHAVKRWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E +++ ++GSGYP DP+TK WL+ +FGFP VRFSW T V V W
Sbjct: 196 FLEDLKDLKMDYGSGYPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQLILDGRAVPVRW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
Length = 334
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG E YQA+L FP +K VV+KKAD+ YP+VS ASI AKV+RD LR W
Sbjct: 169 VAEIYVDTVGKPESYQARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWR 228
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E +++ +GSGYP DP TK WL+++ +FGFP LVRFSW T
Sbjct: 229 FRE-GDSIGTEYGSGYPTDPVTKNWLSENVDAVFGFPQLVRFSWST 273
>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
Length = 235
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+RD L+ W
Sbjct: 70 IAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWT 129
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
F E E NFGSGYPGDP TK +L ++ ++FG+P LVRFSW T
Sbjct: 130 FREGLEE-GINFGSGYPGDPTTKNFLGTYE-LVFGYPRLVRFSWSTA 174
>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
Length = 346
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQAKL FP K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 179 IAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWQ 238
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E +FGSGYPGDP TK +L + ++FGFP LVRFSW T
Sbjct: 239 FRERPNEEENSFGSGYPGDPTTKKFLGEV-DLVFGFPRLVRFSWST 283
>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
Length = 312
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +V++DTVG EKYQ KL FP +K VSKKADSL+P+VS ASI AKVTRD L+ W
Sbjct: 149 ICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKVTRDAALKNWK 208
Query: 73 F-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E E++ N+GSGYP DP TK +L + +FGFPS+VRFSW T
Sbjct: 209 FIERPGEDIDSNWGSGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255
>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
Length = 342
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQAKL FP K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 176 IAEVYVDTVGPPEKYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWK 235
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E +FGSGYPGDP TK +L + ++FGFP LVRFSW T + + +
Sbjct: 236 FRERPNEEVTSFGSGYPGDPTTKKFLGEI-DLVFGFPRLVRFSWSTAGNALEKKAYDMEF 294
Query: 133 SDEMD-EDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 175
DE D +D G ++L F++SK + + + RC
Sbjct: 295 EDETDAKDAEKASYGSKKLSKY---FATSKNENRKRHEYFRERC 335
>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
Length = 277
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 84/125 (67%), Gaps = 8/125 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D VG KY+AKLS+ FP I F V +KADS+YP VS ASIVAKV RD ++ W F+
Sbjct: 136 EVYIDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNWKFD 195
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLW 131
EN+ GSGYPGDP TK +LT++ IFGFP +VR+SW T SH D VEV W
Sbjct: 196 FEVENI----GSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWST-ASHLLNGPDGVEVEW 250
Query: 132 ESDEM 136
+E+
Sbjct: 251 YDEEI 255
>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
gi|108880967|gb|EAT45192.1| AAEL003510-PA [Aedes aegypti]
Length = 335
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+RD L+ W
Sbjct: 170 IAEVYVDTVGPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWS 229
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E E NFGSGYPGDP TK +L + ++FGFP LVRFSW T
Sbjct: 230 FREGLEP-GINFGSGYPGDPVTKNFLGTY-DLVFGFPRLVRFSWST 273
>gi|358053836|dbj|GAA99968.1| hypothetical protein E5Q_06671 [Mixia osmundae IAM 14324]
Length = 367
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+ + I + Y+DTVG A +YQ LS FP+IKF V+ KADS+YP+V ASI AKVTRD
Sbjct: 203 QMGYNIAEAYIDTVGIASQYQDFLSGVFPTIKFTVTSKADSIYPIVGAASIAAKVTRDSV 262
Query: 68 LRGWIFEET------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
L GW + AE+ +FGSGYPGDP T AWL + +FGFP++ RFSW T +
Sbjct: 263 LEGWTYRNALPAMLVAESDDSDFGSGYPGDPRTVAWLERNMDPVFGFPAVARFSWATVKN 322
Query: 122 HF-KDIVEVLWESDE 135
K V W SDE
Sbjct: 323 MLEKKAAHVRW-SDE 336
>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax Sal-1]
gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
Length = 288
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +E
Sbjct: 126 EVFVDTVGKPSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 134
E N+ + FGSGYPGDP TK +L ++ +FGFPS+VRFSW T +++E + E
Sbjct: 186 EPLVNIDKGFGSGYPGDPITKNFLKNNFDTVFGFPSIVRFSWSTAD----NMLETMGEQI 241
Query: 135 EMDEDVSSRRS 145
E +D+ + S
Sbjct: 242 EWYDDIENNDS 252
>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
Length = 259
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 94/171 (54%), Gaps = 22/171 (12%)
Query: 30 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE-------------- 75
+LSQRFP ++FVV KADS YP+VS ASIVAKVTRDRTLR ++ E
Sbjct: 91 RLSQRFPGVQFVVEAKADSTYPIVSAASIVAKVTRDRTLRDFVLGEMAASLDGGSSSSDG 150
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESD 134
A + FGSGYP DP+TK WL + +FGFPSLVRFSW TCT + + +E D
Sbjct: 151 CAAALSTQFGSGYPADPQTKRWLEASINRVFGFPSLVRFSWSTCTPLLEQHAATITFERD 210
Query: 135 EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQ 185
D +G Q LS G + SSG GR + ARKL++
Sbjct: 211 AEDG------AGTGQQVLS-FGGCALPAGGMAAASSGLGRHSYFMARKLQR 254
>gi|126322781|ref|XP_001362490.1| PREDICTED: ribonuclease H2 subunit A-like [Monodelphis domestica]
Length = 304
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG A+KYQ KL +RFP ++ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGPADKYQQKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E ++ ++GSGYP DP+TK WL+ +FGFP VRFSW T V V W
Sbjct: 196 FLEDLGDLKMDYGSGYPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQLILDGRAVPVRW 255
Query: 132 ESDEMDEDVSSRRSGKRQL 150
+ D + R S L
Sbjct: 256 WEEAGDPPAAGRGSSTPSL 274
>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
Length = 332
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG E YQ +L FPSIK +V+KKAD+ YP+VS ASI AKV+RD +R W
Sbjct: 169 VAEIYVDTVGKPESYQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWR 228
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 131
F E + + +GSGYP DP TK WL+ + +FGFP LVRFSW T + + V W
Sbjct: 229 FRED-DCIETEYGSGYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQILESKALTVEW 287
Query: 132 ESDE 135
E E
Sbjct: 288 EETE 291
>gi|444526357|gb|ELV14308.1| Ribonuclease H2 subunit A [Tupaia chinensis]
Length = 244
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V++DTVG + YQ +L QRFP I+ V KAD+L+PVVS ASI AKV RD+ ++ W F E
Sbjct: 83 VFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALFPVVSAASICAKVARDQAVKNWQFVE 142
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 134
+++ ++GSGYP DP+TK+WL H +FGFP VRFSW T + K+ V WE
Sbjct: 143 ELQDLDVDYGSGYPNDPKTKSWLKKHVDPVFGFPQFVRFSWRTAQAILEKEAEAVTWEDS 202
Query: 135 EMDE 138
+E
Sbjct: 203 SPEE 206
>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 73/101 (72%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVR 113
F E+ + + ++GSGYP DP+TKAWL H +FGFP VR
Sbjct: 196 FVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVR 236
>gi|340380420|ref|XP_003388720.1| PREDICTED: ribonuclease H2 subunit A-like [Amphimedon
queenslandica]
Length = 320
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG E YQ+KL FP +K V+KKADSL+P+VS ASI AKV RD L W
Sbjct: 150 LTEVYVDTVGKPESYQSKLESIFPQLKVTVTKKADSLFPIVSAASICAKVIRDACLTEWK 209
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLW 131
F E + ++FG GY D T W+ D +FGFP+LVRFSW T + + + + V W
Sbjct: 210 FTEGDDCYSKSFGCGYTSDTTTINWMKDCIDPVFGFPTLVRFSWSTASKMLESNGLLVKW 269
Query: 132 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
D+ DE+ +++ ++ L F +K + + + + R + E RKLE + HF
Sbjct: 270 PDDDEDEE---QKANCPKISLF---FGKAKTNGDGPKPAKRHR--YFEERKLEAVDHF 319
>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
Length = 277
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 6/123 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D VG KY++KLS+ FP I+F V +KADS+YP VS ASIVAKV RD ++ W F+
Sbjct: 136 EVYIDAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTWKFD 195
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWE 132
EN+ GSGYPGDP TK +LT + IFGFP +VRFSW T ++ + VEV W
Sbjct: 196 FEVENI----GSGYPGDPYTKDFLTKNMDKIFGFPDIVRFSWSTASNLLNGSESVEVDWY 251
Query: 133 SDE 135
+E
Sbjct: 252 DEE 254
>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
Length = 303
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W
Sbjct: 139 VVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWT 198
Query: 73 FEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVL 130
F E N+ N +GSGYPGDP TK +L +FG+P+LVRFSW T V+
Sbjct: 199 FPEGIINVPPNGYGSGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKTAEVLLHGKTVKCT 258
Query: 131 WESDEMDE 138
W+ E++E
Sbjct: 259 WKCLEVNE 266
>gi|115896475|ref|XP_001199108.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 71/111 (63%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVGDA+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F
Sbjct: 161 EVYVDTVGDAKKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFV 220
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
ET + N+GSGYP DP TK WL + +FGF VRFSW T + D
Sbjct: 221 ETNDFDKENYGSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWSTSSLILDD 271
>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
Length = 1257
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 14/151 (9%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ I +Y+DTVG KY+AK+ FPSIK VVSKKADSLYP+VS ASI AKV RDR ++
Sbjct: 1098 YNIESLYVDTVGPPAKYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAKVIRDRIIK 1157
Query: 70 GWIFEETAEN-------MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
FE+ N ++ N GSGYP DP TK+WL +++ +FG+P +VRFSW T ++
Sbjct: 1158 ATDFEKYGSNASGQNAPINTNIGSGYPSDPATKSWLRNNRDKVFGYPDIVRFSWKTTSTA 1217
Query: 123 FK-DIVEVLWESDEMDEDVSSRRSGKRQLKL 152
+ D V W + + S SGKR+ L
Sbjct: 1218 MQGDCYGVQWVNQQ-----SPYFSGKRKRSL 1243
>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
Length = 289
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
SG NL +VY+DTVG AE Y+AKL FP +K V KAD YP+VS ASI AKVTR
Sbjct: 103 SGINL----VEVYVDTVGKAEHYEAKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTR 158
Query: 65 DRTLRGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
DR L+ W EE GSGYPGDP TK++L +FGFPSLVR SW T ++
Sbjct: 159 DRILQMWPKEERGNVPDGTGLGSGYPGDPVTKSYLRACLDPVFGFPSLVRSSWSTASTLL 218
Query: 124 KD-IVEVLWESDEMDEDV 140
+ V V WE DE E+V
Sbjct: 219 EQHGVSVKWEDDETHEEV 236
>gi|393910380|gb|EFO27394.2| ribonuclease HI large subunit [Loa loa]
Length = 305
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W
Sbjct: 139 VVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWT 198
Query: 73 FEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E N+ N +GSGYPGDP TK +L +FG+P+LVRFSW T
Sbjct: 199 FPEGIINVPPNGYGSGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245
>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
Length = 297
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W
Sbjct: 132 VVEIKVDTVGPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWE 191
Query: 73 FEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVL 130
F+E + N FGSGYPGDP TK +L H IFGF SLVR SW T ++ K V
Sbjct: 192 FKEENIKVPENGFGSGYPGDPNTKKFLQLSVHPIFGFCSLVRASWKTASAIVEKRCVPGY 251
Query: 131 WESDE 135
WE DE
Sbjct: 252 WEDDE 256
>gi|403220433|dbj|BAM38566.1| ribonuclease [Theileria orientalis strain Shintoku]
Length = 284
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 7/146 (4%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L + + +VY+D VG KYQ+KLS+ FP I F V +KADS+YP VS ASI+AKV RD
Sbjct: 128 SLGYNLKEVYIDAVGTVSKYQSKLSKLFPKISFSVREKADSIYPTVSAASIIAKVIRDNM 187
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--D 125
+R W + +N GSGYPGDP TK +LT + +FGFP +VRFSW T + + +
Sbjct: 188 IRAWRLDPIV----KNIGSGYPGDPSTKEFLTGNMDKVFGFPDIVRFSWSTAKNLLEGSE 243
Query: 126 IVEVLW-ESDEMDEDVSSRRSGKRQL 150
V V W + D DE + + K+ L
Sbjct: 244 GVPVEWYDPDPEDERNNFKIVPKKPL 269
>gi|72007775|ref|XP_782683.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 70/111 (63%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVGDA+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F
Sbjct: 161 EVYVDTVGDAKKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFV 220
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
E + N+GSGYP DP TK WL + +FGF VRFSW T + D
Sbjct: 221 EKNDIDKENYGSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWSTSSIILDD 271
>gi|391332532|ref|XP_003740688.1| PREDICTED: ribonuclease H2 subunit A-like [Metaseiulus
occidentalis]
Length = 295
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG EKY+AKL FP IK VSKKADSL+ VS ASI AKV RDR L+ W
Sbjct: 139 VTEVYVDTVGPPEKYEAKLQALFPEIKITVSKKADSLFKCVSAASICAKVARDRALKSWS 198
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
+ E + GSGYPGDP TK +L D IFGFPS+ RFSW T K+ V+V W
Sbjct: 199 WREG--TTYEKIGSGYPGDPVTKKFLRDSCDPIFGFPSVTRFSWSTAEDLLAKEHVKVQW 256
>gi|342319084|gb|EGU11035.1| Ribonuclease [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 12/152 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I Q ++DTVG A YQ+KLS FP+I F V+ KAD+L+P+VS ASIVAKVTRDR L W
Sbjct: 183 IKQCFVDTVGPAADYQSKLSSFFPTINFTVTSKADALFPIVSAASIVAKVTRDRILEEWC 242
Query: 73 FEETAENMH---------RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC-TSH 122
F E R FGSGYP DP+T AWL D+ + IFGFP++ RFSW +
Sbjct: 243 FAEPGVGEKGEGEEGEAVRVFGSGYPSDPKTVAWLQDNFNPIFGFPNVARFSWAPVKNAL 302
Query: 123 FKDIVEVLW--ESDEMDEDVSSRRSGKRQLKL 152
K W E + + ++ + +G Q L
Sbjct: 303 LKKGAASKWDDEPASIQKYITGKPAGPEQAPL 334
>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 320
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ QVY+DTVGD YQ+KL + F IKFVV+KKADSLY S ASIVAKVTRDR + GW
Sbjct: 156 VTQVYVDTVGDPAFYQSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGW 215
Query: 72 IFEETAENM--HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV-- 127
+ E + R +GSGYPGD + K WL + +FGFP + RFSWGT K
Sbjct: 216 QWSEPNLDFSEDRKYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEILKGPTRK 275
Query: 128 EVLWESDEMDEDVSSRRS 145
V WE +E DE+ + S
Sbjct: 276 RVDWE-EEPDEEAAGMNS 292
>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 72/107 (67%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
QV++DTVG AEKY+ KLS+ FP + V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 47 QVFVDTVGPAEKYEDKLSKIFPGVNVTVRPKADSLFPIVSAASICAKVARDHAVKHWRFA 106
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
E ++GSGYP DP+TKAWL + +FG+P VRFSW T +
Sbjct: 107 EELGEADTDYGSGYPNDPKTKAWLLRYLDPVFGYPQFVRFSWSTAQT 153
>gi|388580955|gb|EIM21266.1| ribonuclease HII [Wallemia sebi CBS 633.66]
Length = 327
Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 91/177 (51%), Gaps = 32/177 (18%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG A+ YQAKL FPSI F V+ KADSL+P+VS ASI AKVTRD + W F E
Sbjct: 159 VYVDTVGPAKSYQAKLEAAFPSIGFTVASKADSLFPIVSAASIAAKVTRDAIIDNWSFLE 218
Query: 76 TAENM----------------------HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVR 113
N GSGYPGDP T AWL ++ +FG P L R
Sbjct: 219 PISNAISSSKKLKNEDSSVDVSEQQPEKMKLGSGYPGDPNTVAWLKNNLDDVFGLPQLAR 278
Query: 114 FSWGTCTSHFK-DIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
FSW T + + + +V W MDED + +S +LSD S K + I S
Sbjct: 279 FSWSTVKNLLESNAHQVTW----MDEDENVYKS-----QLSDAPPSLKKLGVQPISS 326
>gi|410925260|ref|XP_003976099.1| PREDICTED: ribonuclease H2 subunit A-like [Takifugu rubripes]
Length = 310
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 73/104 (70%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A+KY+ KLS+ FP I V KADSL+P+VS ASI AKV RD ++ W F
Sbjct: 138 EVFVDTVGPADKYEDKLSKIFPGIAVTVRPKADSLFPIVSAASICAKVARDFAVKHWRFG 197
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + ++GSGYP DP+TKAWL + +FG+P LVRFSW T
Sbjct: 198 EDLGEVDADYGSGYPSDPKTKAWLLRYLDPVFGYPQLVRFSWST 241
>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
Length = 264
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 9/143 (6%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
F I +VY+D VG A KY+A L+Q FP IK VV+ KADS++PVVS ASIVAKV RD +
Sbjct: 111 FNITEVYVDAVGPAAKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDS 170
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD---IV 127
W F+++ E + + GSGYPGDP TK +L+ H +FGF S VR SW T S D V
Sbjct: 171 W-FKDSPERV--DVGSGYPGDPVTKQFLSSHLDRLFGFSSFVRVSWSTAKSILDDETRAV 227
Query: 128 EVLWESDEMDEDVSSRRSGKRQL 150
W + +E+ S R RQL
Sbjct: 228 PFEWYDPDSEEEESDR---ARQL 247
>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
Length = 271
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
+++DT+G A+KYQ KLS+ FP+ K V KAD LYPVV ASI AKV RD ++ W F E
Sbjct: 157 IFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAKVIRDTAVQQWKFPE 216
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 131
+ FG+GYPGDP+TK +L + K +FGFP+LVRFSW T ++ V W
Sbjct: 217 KI-TIDAEFGTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWSTSAKLLEEETLVEW 271
>gi|403176173|ref|XP_003334882.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172135|gb|EFP90463.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L + + +Y+DT+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD
Sbjct: 177 DLQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAI 236
Query: 68 LRGWIFEETA-----------ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ WI E+ E+ + GSGYP DP T WL+++ + IFGF LVRFSW
Sbjct: 237 VSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSW 296
Query: 117 GTCTSHFKD 125
GT + D
Sbjct: 297 GTVKTLLAD 305
>gi|331234733|ref|XP_003330025.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309015|gb|EFP85606.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L + + +Y+DT+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD
Sbjct: 177 DLQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAI 236
Query: 68 LRGWIFEETA-----------ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ WI E+ E+ + GSGYP DP T WL+++ + IFGF LVRFSW
Sbjct: 237 VSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSW 296
Query: 117 GTCTSHFKD 125
GT + D
Sbjct: 297 GTVKTLLAD 305
>gi|341896396|gb|EGT52331.1| hypothetical protein CAEBREN_16035 [Caenorhabditis brenneri]
gi|341900120|gb|EGT56055.1| CBN-RNH-2 protein [Caenorhabditis brenneri]
Length = 297
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R N + + ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVT
Sbjct: 123 RDALNCNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVT 182
Query: 64 RDRTLRGWIF-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RD L+ W F E+ + FGSGYPGDP TK +L + +FGF SLVR SW T ++
Sbjct: 183 RDHRLKHWEFKEKNVKVPDAGFGSGYPGDPNTKKFLQLSVNPVFGFCSLVRSSWKTASTI 242
Query: 123 F-KDIVEVLWESDE 135
K V WE DE
Sbjct: 243 VEKRCVPGYWEDDE 256
>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
Length = 334
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQAKL FP+ K V+KKADS Y +VS ASI AKV+RD L+ W
Sbjct: 169 IAEVYVDTVGPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWK 228
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
F E + FGSGYPGDP TK +L D +FGFP LVRFSW T ++
Sbjct: 229 FRE-GTDPEVKFGSGYPGDPVTKKFLGDFDR-VFGFPRLVRFSWSTASN 275
>gi|353241100|emb|CCA72936.1| related to 35 kDa ribonuclease H [Piriformospora indica DSM 11827]
Length = 379
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 80/136 (58%), Gaps = 17/136 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+D +G AEKYQA L RF ++K V KADSLY +V AS+ AKVTRD + GW+
Sbjct: 207 ISEVYVDALGPAEKYQAYLQSRFRTLKITVRNKADSLYKIVGAASVAAKVTRDYLVEGWV 266
Query: 73 FEE---TAENMHRN-------------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+EE T N RN GSGYP DP TKAW+ +H FGFP++ RFSW
Sbjct: 267 WEEATRTGSNATRNEIDGEATWGKGTELGSGYPSDPNTKAWIAEHLDKTFGFPTIARFSW 326
Query: 117 GTC-TSHFKDIVEVLW 131
T+ +D +V W
Sbjct: 327 APIRTAIERDGHKVQW 342
>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
Length = 323
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W
Sbjct: 158 VVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQ 217
Query: 73 FEETAENMHRN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVL 130
F+E + N +GSGYPGDP TK +L IFGF SLVR SW T ++ K V
Sbjct: 218 FKEKGIRIPENGYGSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKTASAIVEKRSVPGY 277
Query: 131 WESDE 135
WE DE
Sbjct: 278 WEDDE 282
>gi|358336633|dbj|GAA55095.1| ribonuclease H2 subunit A [Clonorchis sinensis]
Length = 296
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVG AE Y+AKL FP +K V KAD YP+VS ASI AKVTRDR L+ W
Sbjct: 117 EVYVDTVGKAEHYEAKLQTLFPKLKICVESKADDTYPIVSAASIFAKVTRDRLLQLWPMN 176
Query: 75 ETAE-NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 132
E + GSGYPGDP TK +L +FGFPSLVR SW T + K V++ W+
Sbjct: 177 ERGLFSDSVPVGSGYPGDPLTKRYLRQCVDPVFGFPSLVRSSWSTAGAILEKSGVKITWD 236
Query: 133 SDEMDEDVSSRRSGKRQLKLSD 154
DE E + R+ L++
Sbjct: 237 DDEDQEKAPDAKHAARKRVLTE 258
>gi|402466642|gb|EJW02092.1| ribonuclease HII [Edhazardia aedis USNM 41457]
Length = 250
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 70/109 (64%), Gaps = 6/109 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VYLD +G Y L + FP IKFVV KADS YPVV+GASIVAKVTRDR LR W +
Sbjct: 129 VYLDALGPNTTYMRILEKNFPKIKFVVECKADSTYPVVAGASIVAKVTRDRLLRNWPVTD 188
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ FGSGYPGD T+ WL + +FGFP++VRFSW T FK
Sbjct: 189 ------KKFGSGYPGDDVTRKWLERNFCPVFGFPNIVRFSWKTVKQFFK 231
>gi|17536263|ref|NP_495796.1| Protein RNH-2 [Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
large subunit; Short=RNase HI large subunit; AltName:
Full=Ribonuclease HI subunit A
gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| Protein RNH-2 [Caenorhabditis elegans]
Length = 297
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R + + ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVT
Sbjct: 123 RDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVT 182
Query: 64 RDRTLRGWIF-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RD LR W F E+ + +GSGYPGDP TK +L +FGF SLVR SW T ++
Sbjct: 183 RDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTI 242
Query: 123 F-KDIVEVLWESDEMDEDVSSRR 144
K V WE DE + S+R
Sbjct: 243 VEKRCVPGSWEDDEEEGKSQSKR 265
>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
Length = 303
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 16 VYLDTVGDAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+DT+GD YQ L++ F I FVV KKAD L+ +VS ASIVAKV RD L W +E
Sbjct: 134 VYVDTIGDPSWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWE 193
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE-S 133
+ FGSGYP DP TKAWL ++ IF +P++VRFSW T + + +V W
Sbjct: 194 TLTHTLPTEFGSGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENLLQATPKVAWAFD 253
Query: 134 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 175
D ++ S R S S S K+R I + + C
Sbjct: 254 DSTPKNESVRASITSFFPPSKSASSVGKKRKRSIILTSRKLC 295
>gi|392594942|gb|EIW84266.1| ribonuclease HII [Coniophora puteana RWD-64-598 SS2]
Length = 298
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+D +GD +KY A LS FP I F V KKADSL+ +V AS+ AKVTRD L W++E
Sbjct: 139 EIYVDALGDCDKYTALLSSIFPGIAFTVRKKADSLFKIVGAASVGAKVTRDSCLENWVYE 198
Query: 75 ET-----AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E+ E GSGYP DP T+AWL FGFPSLVRFSW T
Sbjct: 199 ESTSQGDGEGWGNTIGSGYPSDPTTQAWLKSSVDPTFGFPSLVRFSWTT 247
>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
Length = 303
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ + ++YLDTVG A KYQ KL FPSI K VVS KADS+YP+VS SIVAKV RD +
Sbjct: 148 YNVQELYLDTVGPALKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLIA 207
Query: 70 GWIFEE-TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIV 127
F + R+FGSGYP DP TK WL +H+ +FG+P +++RFSW T ++
Sbjct: 208 NTSFAAYQGVEISRDFGSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKTTINNLASES 267
Query: 128 EVLWES 133
+ W S
Sbjct: 268 SIHWVS 273
>gi|336383681|gb|EGO24830.1| hypothetical protein SERLADRAFT_361719 [Serpula lacrymans var.
lacrymans S7.9]
Length = 329
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 71/112 (63%), Gaps = 8/112 (7%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D +G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFE
Sbjct: 149 EVYVDALGTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFE 208
Query: 75 ETAENMHRN--------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E+ N N FGSGYP DP+T+AWL + FGFPS+VRFSW T
Sbjct: 209 ESKGNKVVNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 260
>gi|406606142|emb|CCH42502.1| Ribonuclease H2 subunit A [Wickerhamomyces ciferrii]
Length = 343
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++++DTVG YQAKL +RFP++K +V+KKADS+YP+VS ASI AKVTRD +L
Sbjct: 182 LTEIFVDTVGPPVTYQAKLQKRFPNLKIIVAKKADSIYPIVSAASICAKVTRDFSLNN-- 239
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVL 130
++ +GSGYP DP TK WL + IFG+ +VRFSW T D +E+
Sbjct: 240 SKDQLYGSEITWGSGYPSDPNTKKWLNNAVDPIFGWDQVVRFSWQTAKDAIIKNDGIEIE 299
Query: 131 WESDEMDED 139
WE D +D
Sbjct: 300 WEEDNEKDD 308
>gi|336370925|gb|EGN99265.1| hypothetical protein SERLA73DRAFT_160724 [Serpula lacrymans var.
lacrymans S7.3]
Length = 313
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFEE
Sbjct: 152 VYVDALGTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFEE 211
Query: 76 TAENMHRN--------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ N N FGSGYP DP+T+AWL + FGFPS+VRFSW T
Sbjct: 212 SKGNKVVNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 262
>gi|429328791|gb|AFZ80551.1| ribonuclease H1 large subunit, putative [Babesia equi]
Length = 288
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
+G NL ++Y+DTVG KY+AKL FP+I V+KKADSL+PVVS ASIVAKV R
Sbjct: 130 AGYNLK----EIYVDTVGVESKYEAKLKNLFPNIHIKVAKKADSLFPVVSAASIVAKVVR 185
Query: 65 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
D ++ W + N GSGYPGD T +L+++ H IFGFP +VRFSW T +
Sbjct: 186 DNIIKCW----SNSYGTSNIGSGYPGDAYTIRFLSENLHKIFGFPDIVRFSWRTASDMLN 241
Query: 125 D 125
D
Sbjct: 242 D 242
>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
Length = 289
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 78/128 (60%), Gaps = 7/128 (5%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
++YLDTVG YQA L FP I K VVSKKADSLYP+VS ASI AKV RD + F
Sbjct: 126 ELYLDTVGTPATYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNF 185
Query: 74 EETA-----ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIV 127
++ + + FGSGYP DP TK WLT ++ +FG+PS +RFSW T + + +
Sbjct: 186 DDLEIQDEDDQLSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWSTADNAMRGNCF 245
Query: 128 EVLWESDE 135
V W D+
Sbjct: 246 GVEWNLDK 253
>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 298
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQAKL FP+I V++KADSL+PVV ASI AKVTRD LR W+
Sbjct: 139 VTEIYVDTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWV 198
Query: 73 FEETAENMHR-NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E + +GSGYPGDP T+ +L +FG+ SLVRFSW T
Sbjct: 199 FVEGDVTVPEGGYGSGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKT 245
>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
RN66]
Length = 286
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 89/158 (56%), Gaps = 21/158 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +Y+DTVG E Y+ KL FPSI V+ KADSLYP VSGASI+AKV RD L W
Sbjct: 127 VTHIYIDTVGPPESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWW 186
Query: 73 -------FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF- 123
++ N+ GSGYPGDP+TK +L H +FGFP++VRFSW T
Sbjct: 187 SFPGHDRYDHNGNNLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWSTADQIIE 246
Query: 124 KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
K+ V V W +DED S + S I FS++K
Sbjct: 247 KEGVRVKW---TLDEDNSEQ---------SKISFSTNK 272
>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
Length = 266
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+DTVGDA++++ +LS+ FP + F V KADSLYP+VS ASIVAKV RD++L
Sbjct: 139 NVYVDTVGDADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTD---S 195
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWE 132
+ + + G+GYPGD T WL H H ++GFP LVR SW TC+ + + V + +E
Sbjct: 196 QKSLGLTGEVGTGYPGDSATTTWLKQHMHPLWGFPRLVRHSWETCSRMLEPPEGVGLKFE 255
Query: 133 SDE 135
+DE
Sbjct: 256 ADE 258
>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Ogataea parapolymorpha DL-1]
Length = 303
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 81/124 (65%), Gaps = 10/124 (8%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVG + YQ KLS RFP IK V+KKADSL+P+VS ASIVAKVTRD +L +
Sbjct: 158 EVYVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSL--YYLA 215
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLWE 132
+ A+ +GSGYP DP T WL + H +FG+ S+VRFSW T V ++WE
Sbjct: 216 DGAD-----WGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRDALVKSGAVPMVWE 270
Query: 133 SDEM 136
DE+
Sbjct: 271 -DEL 273
>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
gi|74896782|sp|Q54D13.1|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
Length = 289
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
++YLDTVG +KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F
Sbjct: 130 ELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNF 189
Query: 74 E-----ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-- 126
+ + E + +FGSGYP DP +K WL ++ +FG+P+ +RFSW T + +
Sbjct: 190 DYLNIYDQDEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACF 249
Query: 127 -VEVLWESDEMDEDVSSRRSGKRQL 150
V+ + E+D++ + ++ K++
Sbjct: 250 GVDWVLENDKLKQHFQENQNDKKRF 274
>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 190
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQAKL FP+I V++KADSL+PVV ASI AKVTRD LR W+
Sbjct: 31 VTEIYVDTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWV 90
Query: 73 FEETAENMHR-NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
F E + +GSGYPGDP T+ +L +FG+ SLVRFSW T
Sbjct: 91 FVEGDVTVPEGGYGSGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKTA 138
>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
98AG31]
Length = 279
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 18/143 (12%)
Query: 10 HFFIFQ-VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
H +I Q +Y+DT+G + +Q L + FP++ F V KADS+YP+VS ASIVAKVTRD +
Sbjct: 102 HQYILQHIYVDTLGPPKTHQLNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIV 161
Query: 69 RGWIFEETAENMHRNF----------------GSGYPGDPETKAWLTDHKHIIFGFPSLV 112
W+F E + + GSGYP DP T AWL H +FG+P L
Sbjct: 162 ENWMFVELSIGKRKRLEESQDDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLA 221
Query: 113 RFSWGTCTSHFKDI-VEVLWESD 134
RFSW T + D +V W +
Sbjct: 222 RFSWATVKTLLADRGAQVTWNDE 244
>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232311|emb|CCD79666.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 290
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
SG NL +VY+DTVG AE Y+ KL FP +K V KAD YP+VS ASI AKVTR
Sbjct: 103 SGVNL----VEVYVDTVGKAEHYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTR 158
Query: 65 DRTLRGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
DR L+ W EE GSGYPGDP TK++L +FGFPSLVR SW T +S
Sbjct: 159 DRVLQMWPKEERGSVPEGTGLGSGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLL 218
Query: 124 -KDIVEVLWESDEMDEDV 140
+ V V WE DE E+V
Sbjct: 219 DQHGVSVRWEDDETHEEV 236
>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica CLIB122]
Length = 315
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 74/117 (63%), Gaps = 10/117 (8%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ + Y+DTVG Y AKLS++FP IKF V+KKADSL+P+VS ASI AKVTRD L+
Sbjct: 155 LLTEAYIDTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQ 214
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E +GSGYP DP+T WL H +FG+ +VRFSW T KD+VE
Sbjct: 215 DLSE------GTWGSGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTA----KDLVE 261
>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
Length = 284
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 8/158 (5%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQ----RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR 66
F + QV+LDTVG E YQAKL Q +P +KF VS KAD+ +PVV ASI AKVTRD
Sbjct: 119 FNVTQVFLDTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDL 178
Query: 67 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD- 125
+ E + + + GSGYP DP TK WL + +FGFPS VR+SW T + F +
Sbjct: 179 QITNNDMREPLD-LSKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNIFNEK 237
Query: 126 --IVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
V ESD+ D++ S Q K G+ S K
Sbjct: 238 KLQVNFFDESDKKDKNQKSLTQMVSQKKSETNGYYSKK 275
>gi|384483740|gb|EIE75920.1| ribonuclease HII [Rhizopus delemar RA 99-880]
Length = 212
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+D VG + Y+ KLS FP I V KAD+LYP+VS ASI AKVTRD+ ++ W++
Sbjct: 94 EIYVDPVGPSASYKKKLSSFFPGIAITVEPKADALYPIVSAASICAKVTRDQYVQNWVWT 153
Query: 75 ETA--ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 131
E + + FGSGYP DP T W+ ++ FGFPS++RFSW T ++ + W
Sbjct: 154 EPGFEGTVSKQFGSGYPSDPNTIKWMDKNEDDFFGFPSIMRFSWKTISNRMNLTRNIEW 212
>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232310|emb|CCD79665.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 237
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
SG NL +VY+DTVG AE Y+ KL FP +K V KAD YP+VS ASI AKVTR
Sbjct: 50 SGVNL----VEVYVDTVGKAEHYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTR 105
Query: 65 DRTLRGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
DR L+ W EE GSGYPGDP TK++L +FGFPSLVR SW T +S
Sbjct: 106 DRVLQMWPKEERGSVPEGTGLGSGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLL 165
Query: 124 -KDIVEVLWESDEMDEDV 140
+ V V WE DE E+V
Sbjct: 166 DQHGVSVRWEDDETHEEV 183
>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
Length = 308
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+D +G+ Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + W+
Sbjct: 148 VTEVYVDALGNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTRDVCIEEWV 207
Query: 73 FEETAENM----HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
FEE N + GSGYP DP T+AWL + +FGFP +VRFSW T
Sbjct: 208 FEEDGGNAKSKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTV 258
>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
Length = 421
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQAKL FP +K VSKKADS Y +VS ASI AKV RD L W E
Sbjct: 238 VYVDTVGPDTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAWRHPE 297
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
+ +G GYP DP+TKAWL + +FGFPS+VRFSW T + K V W
Sbjct: 298 RI-GANTEYGCGYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTLLDKHAAAVTW 353
>gi|449540326|gb|EMD31319.1| hypothetical protein CERSUDRAFT_163191 [Ceriporiopsis subvermispora
B]
Length = 318
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 16/142 (11%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+D +G+ E YQ LS++FP I V KADSL+ +V AS+ AKVTRD + GW FE
Sbjct: 148 EIYVDALGNTETYQTYLSKQFPGINITVKAKADSLFKIVGAASVAAKVTRDAWIEGWKFE 207
Query: 75 ETAENM----------------HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + FGSGYP DP+TKAW++ FGFPS VRFSW T
Sbjct: 208 EQRPQLVATPGASLSTVLNPSWGEEFGSGYPSDPKTKAWISKSLEPTFGFPSFVRFSWTT 267
Query: 119 CTSHFKDIVEVLWESDEMDEDV 140
+ + +DE +E +
Sbjct: 268 VKNELDKSAHAVTWTDEGNESL 289
>gi|448119560|ref|XP_004203761.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384629|emb|CCE78164.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 368
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 6/141 (4%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N I ++++DTVG YQAKL +RFP I+ V+KKADSL+PVVS ASIVAKVTRD+
Sbjct: 200 NRKLNIAKIFVDTVGPPASYQAKLQKRFPGIEVTVTKKADSLFPVVSTASIVAKVTRDKV 259
Query: 68 LRGWIFEETAENMHR-NFGSGYPGDPETKAWLTDHKHIIFG-FPSLVRFSWGTCTSHF-- 123
L + + A + +FGSGYP DP T WL +FG F LVRFSW T
Sbjct: 260 LHYYC--DIAPLLQSASFGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKDALVK 317
Query: 124 KDIVEVLWESDEMDEDVSSRR 144
V++E++ + ED R
Sbjct: 318 NGACSVIYEAECVKEDTGYRN 338
>gi|426199388|gb|EKV49313.1| hypothetical protein AGABI2DRAFT_149543 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+D +G+ Y+ LS+ FP I F V+ KADS + +V AS+ AKVTRD + W
Sbjct: 140 LTEVYVDALGNTTTYEKDLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIECWH 199
Query: 73 FEETAEN----MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
FEETA N ++ FGSGYP DP T+ WL ++ FGFP +VRFSW T
Sbjct: 200 FEETAGNDQVEWNKAFGSGYPSDPNTQIWLKENVEPTFGFPKVVRFSWTT 249
>gi|389584587|dbj|GAB67319.1| ribonuclease H1 large subunit [Plasmodium cynomolgi strain B]
Length = 279
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +E
Sbjct: 126 EVFVDTVGKASVYEEKLKKLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYE 185
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS 110
E N+ + FGSGYPGDP TK +L ++ +FGFP+
Sbjct: 186 EPIVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPT 221
>gi|393221211|gb|EJD06696.1| hypothetical protein FOMMEDRAFT_165421 [Fomitiporia mediterranea
MF3/22]
Length = 336
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ +VY+D +G+ Y+ LS FP+I F V+ KADS + +V ASI AKVTRD + G
Sbjct: 174 IVLSEVYVDALGNTTTYEKHLSNLFPNISFTVTAKADSKFKIVGAASIAAKVTRDAWITG 233
Query: 71 WIFEETAENMHRNF----GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
W FEE + + GSGYP DP+T+AWL D FG+PSL RFSWGT
Sbjct: 234 WAFEEHESSPQYTWPDERGSGYPSDPKTQAWLRDAVEPTFGYPSLARFSWGT 285
>gi|403374437|gb|EJY87169.1| Ribonuclease [Oxytricha trifallax]
Length = 373
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Query: 7 KNLHFFIFQVYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTR 64
K L + +V LDTVG Y+ L R ++ +V KAD +PVVS ASI AKVTR
Sbjct: 193 KALGVNVKRVVLDTVGQPHSYKQLLHNRLKDDELEIIVESKADLNHPVVSAASICAKVTR 252
Query: 65 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
D+ L W F E + + ++G GYPGDP+ K WL + +FGFP+LVRFSW TC++ +
Sbjct: 253 DQVLADWQFPED-KKIDTDYGCGYPGDPKAKEWLKRNLDPVFGFPTLVRFSWKTCSTILE 311
Query: 125 D-IVEVLWESDEMDEDVSSRRSGKRQLKLS 153
D V + W D++DE K+Q KL+
Sbjct: 312 DNQVNINWR-DDIDE------KDKKQQKLN 334
>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++DTVG+A+ Y+ +L Q FP I F V KAD+ YP S S+VAK RDR + +
Sbjct: 218 IGACFIDTVGNADHYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQ 277
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHI-IFGFPSLVRFSWGTCTSHF-KDIVEVL 130
+ E + FGSGYP DP K W+ ++++ +FG+P +VRFSW ++ VL
Sbjct: 278 YSEMSLKRDPKFGSGYPSDPVCKDWMENNQNCKVFGYPDVVRFSWNPAKKALERNAASVL 337
Query: 131 WESDEMDED 139
+++D +DED
Sbjct: 338 FQADIIDED 346
>gi|363753492|ref|XP_003646962.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890598|gb|AET40145.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +Y+DTVG YQ KL +RFP KF V+KKADSLYPVVS AS++AKVTRD L
Sbjct: 148 ISHIYVDTVGPPITYQDKLEKRFPVCKFTVAKKADSLYPVVSVASVIAKVTRDVWL---- 203
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKD---IVE 128
E+ GSGYPGDP+T WL ++ +FG+ P +VRFSW TC + + +
Sbjct: 204 -EQLRTIPDEILGSGYPGDPKTVKWLNENIRPLFGWNPEIVRFSWQTCQNILETNPHAIN 262
Query: 129 VLWESDEM 136
+ WE + +
Sbjct: 263 IEWEEESL 270
>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
Length = 226
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDH 101
F E +++ ++GSGYP DP+TKAWL H
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKH 224
>gi|340501874|gb|EGR28608.1| ribonuclease large subunit, putative [Ichthyophthirius multifiliis]
Length = 258
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 11/129 (8%)
Query: 1 MHDRSGKNLHFFIFQVYLDTVGDAEKYQAKLS----QRFPSIKFVVSKKADSLYPVVSGA 56
M + LHF +VY+DTVG+ E YQ KL +++P IKF V +KAD+ +PVV A
Sbjct: 78 MQELQDDELHF---EVYIDTVGNKETYQKKLENDYHKQYPQIKFCVKEKADADFPVVGAA 134
Query: 57 SIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
SI AKV RD+ + E+ + ++ GSGYP DP+TK WL ++ +FGF ++VRFSW
Sbjct: 135 SICAKVIRDKEIENQEIEKNSVSL----GSGYPSDPQTKKWLQNNFDGVFGFGNMVRFSW 190
Query: 117 GTCTSHFKD 125
T + FK+
Sbjct: 191 STVENIFKE 199
>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Komagataella pastoris CBS 7435]
Length = 314
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+DTVG YQ KL QRFP++ VSKKAD++YP VS AS+ AKVTRD LR
Sbjct: 166 HVYVDTVGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCLR----T 221
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT---CTSHFKDIVEVLW 131
E + GSGYP DP TK WL H +FG+ VRFSW T C I V
Sbjct: 222 SNGEENLLDCGSGYPSDPNTKKWLAQSIHPLFGWSRDVRFSWQTAKDCLERHNSIKVVFG 281
Query: 132 ESDEMDEDVSSRRSGKRQLKLSDIGFSSS 160
E + + K++ D+ S+S
Sbjct: 282 EEEPTPVNFGDLGLSKQKTDFKDLEISTS 310
>gi|449017231|dbj|BAM80633.1| probable ribonuclease HI large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 328
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 85/131 (64%), Gaps = 6/131 (4%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
FI +++DTVG+ + YQ +L + FP I + VV +A+S + VV+ ASI+AKVTRD+ LR
Sbjct: 113 MFIEGLFVDTVGEPDAYQMRLKRIFPKIPRIVVQSEAESRFAVVAAASIIAKVTRDKALR 172
Query: 70 GWIFEETAENMH----RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-K 124
W F E A + R +GSGYP DP T+ WL H IFGFPS+VRFSW TC+ K
Sbjct: 173 TWTFPEEANDPQLRFSREYGSGYPADPLTQRWLRKHLDPIFGFPSIVRFSWSTCSRILEK 232
Query: 125 DIVEVLWESDE 135
+ V+V W ++
Sbjct: 233 ECVQVDWPEED 243
>gi|407042272|gb|EKE41240.1| ribonuclease HII protein [Entamoeba nuttalli P19]
Length = 270
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLR 69
I +Y DTVG ++KYQA ++ F +K V KAD LYPVVS ASI AKVTRD L
Sbjct: 120 IVHIYCDTVGPSKKYQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLD 179
Query: 70 GWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
WI+EET N+ R G GYP D +T W+ +FG+P+LVRF W T K I+E
Sbjct: 180 NWIYEET--NIQTRQVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE 233
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
E V +R Q K +G SK
Sbjct: 234 ---------EKVPMKRPFPYQNKQDVVGIIQSK 257
>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+D +G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + GW
Sbjct: 141 VSEVYVDALGTTTTYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVEGWT 200
Query: 73 FEETAEN-----MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
FEE + GSGYP DP T+AWL +FGFP LVRFSW T
Sbjct: 201 FEENIGKEGDKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTT 251
>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708100|gb|EMD47623.1| rnase HI large subunit, putative [Entamoeba histolytica KU27]
Length = 270
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLR 69
I +Y DTVG ++KYQA ++ F +K V KAD LYPVVS ASI AKVTRD L
Sbjct: 120 IVHIYCDTVGPSKKYQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLD 179
Query: 70 GWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
WI+EET N+ R G GYP D +T W+ +FG+P+LVRF W T K I+E
Sbjct: 180 NWIYEET--NIQTRQVGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE 233
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
E V +R Q K +G SK
Sbjct: 234 ---------EKVPMKRPFPYQNKQDVVGIIQSK 257
>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
Length = 345
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 8/118 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++++DTVG YQAKL + FPSI V+KKADS+YP+VS AS+VAKVTRD L+ W
Sbjct: 188 VREIFVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQ-W- 245
Query: 73 FEETAENM-HRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE 128
+ E EN+ + GSGYP DP T WLT + +FG+ L+RFSW T KD +E
Sbjct: 246 YNENVENLIGKCLGSGYPSDPNTSKWLTSNVDKVFGWDFGLIRFSWQTA----KDALE 299
>gi|399218230|emb|CCF75117.1| unnamed protein product [Babesia microti strain RI]
Length = 277
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D VG E Y+ K+ FP++K +++++ADS YP+VS ASI+AKV RDRT++ W E
Sbjct: 140 VYIDAVGPTEAYKMKVKANFPNLKVIIAERADSTYPLVSAASIIAKVLRDRTVKAW---E 196
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
+++ FG GYP DP TK +L IFGFP +R SW T + + V W+
Sbjct: 197 SSDKYKLPFGCGYPSDPLTKEYLKKSFDKIFGFPPHIRSSWATADAFLSKSLPVDWK 253
>gi|448117125|ref|XP_004203179.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384047|emb|CCE78751.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 81/140 (57%), Gaps = 14/140 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW- 71
I ++++DTVG YQAKL +RFP ++ V+KKADSL+PVVS ASIVAKVTRD+ L +
Sbjct: 203 IAKIFVDTVGPPASYQAKLQRRFPGVEVTVTKKADSLFPVVSTASIVAKVTRDKVLHHYC 262
Query: 72 ----IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG-FPSLVRFSWGTCTSHF--K 124
+ + A FGSGYP DP T WL +FG F LVRFSW T
Sbjct: 263 SIAPLLQSAA------FGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKDALVKN 316
Query: 125 DIVEVLWESDEMDEDVSSRR 144
V++E++ + ED R
Sbjct: 317 GACSVIYEAECVKEDSGYRN 336
>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
Length = 309
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 6 GKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 65
G LH VY+DTVG YQ KL Q+FP IKF V+KKADSLY VVS ASIVAKVTRD
Sbjct: 157 GVKLH----HVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRD 212
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFK 124
L W ++ + GSGYP D +T AWL + + G+ P LVRFSW T +
Sbjct: 213 ILLEQWA-QQVSPPEAGPLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTSETLLD 271
Query: 125 DI-VEVLWESDEMDEDVSSRRS 145
+ +++ WE + V + +S
Sbjct: 272 NKGIQIEWEEKSKSKPVWAGKS 293
>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
Length = 269
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 70/113 (61%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +Y+DTVG AE YQ L +FP+IK V KAD+ Y VV ASI AKVTRDR L +
Sbjct: 124 IKALYVDTVGIAESYQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFK 183
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
FEE + ++GSGYP DP+T WL + +FG+PS+ RF W F++
Sbjct: 184 FEEPGLEISHDWGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMMFEN 236
>gi|157876580|ref|XP_001686636.1| putative ribonuclease H [Leishmania major strain Friedlin]
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
Length = 301
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ Y+DTVG E YQA+L+ RFP ++ V+KKADS++P+VS ASIVAK RD +
Sbjct: 153 LCAAYVDTVGPPETYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAI---- 208
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKDI--- 126
E + N GSGYP DP T WL H H F FP R SWG D
Sbjct: 209 -----EALGENIGSGYPSDPRTMEWLRSHVHRFFSFPHAYDFARHSWGPLVQLANDPAVR 263
Query: 127 VEVLWESDEMDEDVSSRRSGKRQLKLS 153
V V+ E D R RQ KLS
Sbjct: 264 VPVVCEQDLEGARQQGRGGDSRQQKLS 290
>gi|346972898|gb|EGY16350.1| ribonuclease H2 subunit A [Verticillium dahliae VdLs.17]
Length = 351
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--- 69
+ ++Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMY 242
Query: 70 --------GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
G E E M +GSGYP D +WL + H +FG+ S RFSWGT
Sbjct: 243 EAHKAANGGHAGTEDGEGMA--WGSGYPSDARCVSWLRGNMHPVFGWGSECRFSWGTAKD 300
Query: 122 HF--KDIVEVLWESDEMDE 138
K V+V W DE ++
Sbjct: 301 MLDGKGGVKVDWPVDETED 319
>gi|389749729|gb|EIM90900.1| ribonuclease H2 subunit A [Stereum hirsutum FP-91666 SS1]
Length = 317
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 77/137 (56%), Gaps = 17/137 (12%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D +G + Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + GWI+E
Sbjct: 147 EVYVDALGPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWIEGWIYE 206
Query: 75 E-------------TAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E T+E R FGSGYP DP+TK W+ FGFPS VRFSW T
Sbjct: 207 EDSPSSDKQYELQSTSEAKRRWASEFGSGYPSDPKTKEWIKLSLDRTFGFPSFVRFSWTT 266
Query: 119 CTSHF-KDIVEVLWESD 134
K+ +V W D
Sbjct: 267 AKVALEKEAHDVQWIDD 283
>gi|354545252|emb|CCE41979.1| hypothetical protein CPAR2_805280 [Candida parapsilosis]
Length = 381
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N + ++Y+DTVG YQAKL + FP+I VSKKADS+YP+VS AS+VAKVTRD
Sbjct: 216 NQGINVTEIYVDTVGPPVSYQAKLKKLFPTIDITVSKKADSVYPIVSTASVVAKVTRDLN 275
Query: 68 LRGWIFEETAENMH------RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCT 120
+R + N H + GSGYP DP T WL + +FG+ +RFSW T
Sbjct: 276 IRHY-------NTHLPILQGQKLGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSWQTAK 328
Query: 121 SHFK--DIVEVLWESDEMDE 138
D VEV+++ D + E
Sbjct: 329 DALMKHDAVEVIYQDDCVKE 348
>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 352
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ + YQ KL FPS+K V+KKADSL+P VS AS+ AKVTRD L I
Sbjct: 184 VKEVYIDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALD--I 241
Query: 73 FEET---------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
E E+M+ +GSGYP D + +WL H +FG+ + RFSWGT
Sbjct: 242 CYEALQKERVGKGMEHMNDGWGSGYPSDSKCTSWLKKEMHPLFGWGNECRFSWGTAKELL 301
Query: 122 HFKDIVEVLWESDEMDE 138
K ++V W +DE +E
Sbjct: 302 EVKAGLKVDWPADEDEE 318
>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
Length = 260
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
++ N + + Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVT
Sbjct: 134 QAALNRGINVTECYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVT 193
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
RDR + GW E E + R GSGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 194 RDRYVHGW--SEDEEEVIR--GSGYPSDPKTQAYLKKSIDPVFGYKGIVRFSWAT 244
>gi|402591687|gb|EJW85616.1| ribonuclease HII [Wuchereria bancrofti]
Length = 304
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DTVG YQA L ++FP ++ +VS+KAD+ +P+VS ASI+AKV RDR LR W
Sbjct: 139 VVEVYVDTVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIIAKVKRDRALRNWT 198
Query: 73 FEETAEN-MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F E N + +GSGYPGDP TK +L D +FG+P+LVRFSW T
Sbjct: 199 FPEGIVNVLPGGYGSGYPGDPNTKNFLLDAVDQVFGYPNLVRFSWKT 245
>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
gi|392862022|gb|EAS37377.2| ribonuclease HII [Coccidioides immitis RS]
Length = 353
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L
Sbjct: 185 VKEVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-IC 243
Query: 73 FEET---------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+EE E+M+ +GSGYP D + WL H +FG+ + RFSWGT
Sbjct: 244 YEELQRQRAGMVEMEHMNNGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA---- 299
Query: 124 KDIVEV 129
KD++EV
Sbjct: 300 KDLLEV 305
>gi|389603175|ref|XP_001568699.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 318
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 38/181 (20%)
Query: 1 MHDRSGKNLHFF-------------------IFQVYLDTVGDAEKYQAKLSQRFPSIKFV 41
M RSG+NL+ + Y+DTVG + YQA+L+ RFP ++
Sbjct: 122 MTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPPDTYQARLAGRFPHLRVT 181
Query: 42 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH 101
V+KKADS +P+VS ASIVAK TRD + + + N GSGYP DP AWL H
Sbjct: 182 VAKKADSKFPIVSAASIVAKTTRDTAI---------QELGENIGSGYPSDPRAIAWLRSH 232
Query: 102 KHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDEDVSSR--RSGK-RQLKL 152
H F F + VR SWG D V V++E D +DE+ + R R G RQ KL
Sbjct: 233 VHRFFVFRHVYGYVRHSWGPVVQLANDPAVCVPVVFEQD-LDEEAARRLERGGDGRQQKL 291
Query: 153 S 153
S
Sbjct: 292 S 292
>gi|345568395|gb|EGX51289.1| hypothetical protein AOL_s00054g359 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 75/126 (59%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++++DTVG A YQAKL +RFP+ K VSKKADSLYP VS AS+ AKVTRD L+
Sbjct: 197 VKEIFVDTVGPAVTYQAKLQRRFPTTKVTVSKKADSLYPSVSVASVCAKVTRDFALKESF 256
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
+ N GSGYP DP++ A+L +FG+ S RFSW T K EV+
Sbjct: 257 SLASGGGEVPNTGSGYPSDPKSIAYLKGSMDSLFGWGSETRFSWSTAAELLKKDAEVVDW 316
Query: 133 SDEMDE 138
D DE
Sbjct: 317 PDNDDE 322
>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 260
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 4/115 (3%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
++ N + + Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVT
Sbjct: 134 QAALNRGINVTECYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVT 193
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
RDR + GW +E E + R GSGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 194 RDRYVHGWSQDE--EEVIR--GSGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWAT 244
>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
Silveira]
Length = 353
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 14/126 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L
Sbjct: 185 VKEVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-IC 243
Query: 73 FEET---------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+EE E+M+ +GSGYP D + WL H +FG+ + RFSWGT
Sbjct: 244 YEELQKQRAGMVEMEHMNDGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA---- 299
Query: 124 KDIVEV 129
KD++EV
Sbjct: 300 KDLLEV 305
>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
Length = 368
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 23/151 (15%)
Query: 10 HFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL- 68
H + +VY+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 184 HINVTEVYIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALE 243
Query: 69 ---RGWIFEETAENMH-----------------RNFGSGYPGDPETKAWLTDHKHIIFGF 108
+ + +E ++++ +GSGYP D + WL + +FG+
Sbjct: 244 SCYQAFYQQEPSQDVEDTDMKDSETTPATKKEAAGWGSGYPSDSKCVNWLRQNMDSVFGW 303
Query: 109 PSLVRFSWGTCTSHF--KDIVEVLWESDEMD 137
+ RFSWGT KD + V W +DE D
Sbjct: 304 GNECRFSWGTAKEMLEGKDAIRVDWPADEDD 334
>gi|408388455|gb|EKJ68139.1| hypothetical protein FPSE_11606 [Fusarium pseudograminearum CS3096]
Length = 338
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 173 VQEIFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VL 231
Query: 73 FEETAENMHRN-----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--- 124
FE A++ + +GSGYP D +W+ ++ H +FG+ RFSWGT +
Sbjct: 232 FEARADDEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTAKDMLEGKG 291
Query: 125 DIVEVLWESDEMDE 138
+ V+V W D+ E
Sbjct: 292 NGVKVEWPLDDDGE 305
>gi|392578857|gb|EIW71984.1| hypothetical protein TREMEDRAFT_26073 [Tremella mesenterica DSM
1558]
Length = 272
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 8/114 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ + Y+D +G A ++QA+LS FP+I F V KADSL+ +VS ASI+AKVTRDR + W+
Sbjct: 138 VTECYVDALGPAPQWQARLSSLFPTISFTVCPKADSLFKIVSAASIIAKVTRDRYIENWL 197
Query: 73 FEETA---ENMHRN-----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
ET+ E++ N +GSGYP DP T+A+L ++ +FG+ VRFSW T
Sbjct: 198 DWETSKSHESLSFNQNGFSWGSGYPSDPRTQAFLKENLDPVFGYTGAVRFSWAT 251
>gi|444320573|ref|XP_004180943.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
gi|387513986|emb|CCH61424.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
Length = 312
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 10/124 (8%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG + YQ KL RFP++KF V+KKADSLY +VS AS+VAKVTRD ++ +
Sbjct: 161 VYVDTVGPPQSYQKKLETRFPNVKFTVTKKADSLYCIVSVASVVAKVTRD-----FLIDS 215
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKD----IVEVL 130
N + N GSGYP DP TK WL + + +FG+P +VRFSW TC + D +++
Sbjct: 216 MKRNPNENIGSGYPSDPNTKRWLRESQTKLFGWPCDMVRFSWQTCDTLLTDSNTKSIQID 275
Query: 131 WESD 134
WE D
Sbjct: 276 WEED 279
>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
Length = 375
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG YQAKLS+ FP++ V+KKADS+YP+VS AS+VAKVTRD L +
Sbjct: 204 VTKVFVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYN 263
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFK--DIVEV 129
+ H GSGYP DP T WL + +FG+ LVRFSW T + + V V
Sbjct: 264 IHLPLIHNHA-LGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKDSLEKNNAVPV 322
Query: 130 LWESDEMDED 139
++E+ + ED
Sbjct: 323 VYEAQCIKED 332
>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
Length = 338
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 81/134 (60%), Gaps = 9/134 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 173 VQEIFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VL 231
Query: 73 FEETAENMHRN-----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK--- 124
FE A+ + +GSGYP D +W+ ++ H +FG+ RFSWGT +
Sbjct: 232 FEARADGEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTAKDMLEGKG 291
Query: 125 DIVEVLWESDEMDE 138
+ V+V W D+ E
Sbjct: 292 NGVKVEWPLDDDGE 305
>gi|405122261|gb|AFR97028.1| ribonuclease HI large subunit [Cryptococcus neoformans var. grubii
H99]
Length = 326
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 14 FQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+ Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW+
Sbjct: 162 LKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWVD 221
Query: 74 EETAENMHRNF----------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
E + + GSGYP DP+T+A+L + +FG+ +VRFSW T
Sbjct: 222 PEDVVHGATDIKSQDEEEVIRGSGYPSDPKTQAYLKESIDPVFGYKGIVRFSWATVKVLL 281
Query: 124 -KDIVEVLWESDEMDEDV----SSRRSGKRQLKLSDIGFSS 159
K VE W D S+ +R D+G SS
Sbjct: 282 DKQGVESKWIDDTTQRSAANWFSADADNERPKVWRDLGVSS 322
>gi|403414687|emb|CCM01387.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 67/116 (57%), Gaps = 13/116 (11%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G + Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + W FEE
Sbjct: 151 VYVDALGPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWVEDWTFEE 210
Query: 76 -------------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
T + GSGYP DP+T+AW+ FGFPSLVRFSW T
Sbjct: 211 SSSPHDAESNSKPTNTRWGKELGSGYPSDPKTQAWIKGSLDPTFGFPSLVRFSWTT 266
>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
Length = 343
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ +VY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 173 VKEVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCY 232
Query: 69 ------RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RG + +E A + +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 233 EALVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTAREL 289
Query: 123 FKDI--VEVLWESDEMDE 138
+ ++V W DE DE
Sbjct: 290 LESNRGIKVDWPVDEDDE 307
>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
Length = 386
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 82/153 (53%), Gaps = 27/153 (17%)
Query: 10 HFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
H + ++Y+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 198 HINVTEIYIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALE 257
Query: 70 GW---IFEETAE-------NMHRN---------------FGSGYPGDPETKAWLTDHKHI 104
++E ++ NM + +GSGYP D + WL +
Sbjct: 258 SCYRAFYQEPSQKTVDGDTNMMESSETIPPSVSKVEELGWGSGYPSDSKCVNWLRQNMDS 317
Query: 105 IFGFPSLVRFSWGTCTSHF--KDIVEVLWESDE 135
+FG+ + RFSWGT KD V V W +DE
Sbjct: 318 VFGWGNECRFSWGTAKEMLDGKDAVRVDWPADE 350
>gi|401884266|gb|EJT48435.1| hypothetical protein A1Q1_02567 [Trichosporon asahii var. asahii
CBS 2479]
Length = 301
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 14/116 (12%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI-- 72
Q ++D +G ++ +Q KLS FP+IKF+V KADSL+ +V ASIVAKVTRDR + GW+
Sbjct: 139 QCFVDALGPSQVWQDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAKVTRDRYIEGWVDA 198
Query: 73 ----------FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+E AE + R GSGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 199 EGPMPGSAGAGDEEAEELIR--GSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWAT 252
>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 79/153 (51%), Gaps = 19/153 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLR 69
I +Y DTVG + KYQ ++ F IK V KAD LYPVVS ASI AKVTRD L
Sbjct: 120 IVHIYCDTVGPSGKYQMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLD 179
Query: 70 GWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
WI+EE N+ R G GYP D +T W+ +FG+P+LVRF W T K I+E
Sbjct: 180 NWIYEE--RNIQTRKVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE 233
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
E V +R Q K +G SK
Sbjct: 234 ---------EKVPMKRPFPYQNKQDVVGVIQSK 257
>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 312
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 84/132 (63%), Gaps = 12/132 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I VY+DTVG YQ KL RFP+IKF V+KKADSLY VVS AS+VAKVTRD I
Sbjct: 158 IDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDI-----I 212
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD------ 125
E+ N + GSGYP DP+T AWL ++ +F +P SLVRFSW TC + K+
Sbjct: 213 LEQMKSNENEILGSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTLIKEDKHKIG 272
Query: 126 IVEVLWESDEMD 137
+V + WE D ++
Sbjct: 273 MVPIEWEEDYIN 284
>gi|451994868|gb|EMD87337.1| hypothetical protein COCHEDRAFT_1197453 [Cochliobolus
heterostrophus C5]
Length = 343
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 14/170 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ ++Y+DT+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L
Sbjct: 172 VKEIYIDTIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCY 231
Query: 69 -----RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
R E + +GSGYPGD T AW+ + +FG+ + RFSWGT
Sbjct: 232 EPYHSRTDPEAEDGAQVQAAWGSGYPGDARTSAWMKQNMDPLFGWGNETRFSWGTAKEML 291
Query: 124 ---KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 168
K V + W E D D ++ +GK + +++ KR +EE+E
Sbjct: 292 EGKKADVSIDWPAEDDGNDMRMTDFFNGKNEAISNELVDWFGKRVTEEME 341
>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAKVTRD + +
Sbjct: 188 VKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH-YY 246
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--VEVL 130
++ A + GSGYP DP T WL + +FG+ LVRFSW T K+ V V+
Sbjct: 247 HDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKDSLKNHHGVSVV 306
Query: 131 WESD-EMDE---DVSS 142
+E+D E D DVSS
Sbjct: 307 YEADCEKDPGYGDVSS 322
>gi|448537761|ref|XP_003871401.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis Co
90-125]
gi|380355758|emb|CCG25276.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis]
Length = 375
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD +R +
Sbjct: 214 VTEIYVDTVGPPISYQAKLKKHFPTIDITVAKKADSIYPIVSTASVVAKVTRDLNIRHYN 273
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEV 129
H+ GSGYP DP T WL + +FG+ +RFSW T V+V
Sbjct: 274 THLPLLQDHK-LGSGYPSDPNTSYWLNHNVDPVFGWCFGFIRFSWQTAKDALIRHGAVDV 332
Query: 130 LWESDEMDE 138
+++ D + E
Sbjct: 333 IYQDDCVKE 341
>gi|365758681|gb|EHN00512.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 96/162 (59%), Gaps = 17/162 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPMSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D V +
Sbjct: 207 LKRDPDEVIGSGYPSDPKTVAWLKRNQTGLMGWPTDMVRFSWQTCQTLLDDPTRHSVIIK 266
Query: 131 WESDEMDEDVSSRRSGK---RQLKLSDIGFSSSKRRSEEIES 169
WE MD SR++ RQL+L + S+ ++R +++
Sbjct: 267 WEEQYMD----SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|358378191|gb|EHK15873.1| hypothetical protein TRIVIDRAFT_39184 [Trichoderma virens Gv29-8]
Length = 335
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 15/141 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 162 IKEIYVDTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLF 221
Query: 73 F------------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
E +E++ +GSGYP D +T WL ++ H +FG+ S RFSWGT
Sbjct: 222 HARQVATAATNGEEAPSEDIPMEWGSGYPSDSKTVGWLRNNMHPLFGWGSECRFSWGTAK 281
Query: 121 SHFK---DIVEVLWESDEMDE 138
+ + +++ W +D+ E
Sbjct: 282 DMLESKGNGIKIEWPADDDGE 302
>gi|401623866|gb|EJS41947.1| rnh201p [Saccharomyces arboricola H-6]
Length = 307
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 14/159 (8%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPDTKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVL 130
N GSGYP DP+T AWL +++ + G+P+ +VRFSW TC + KD V +
Sbjct: 207 LKRNPDEVLGSGYPSDPKTVAWLKNNQTSLMGWPANMVRFSWQTCQTLLDNTTKDNVLIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD SR++ ++ K + + R + + +
Sbjct: 267 WEEQYMD----SRKNAAQKTKQLQLQMVTKPARGKRLRT 301
>gi|395332583|gb|EJF64962.1| ribonuclease H2 subunit A [Dichomitus squalens LYAD-421 SS1]
Length = 304
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D +G Y+A LS FP I F V KAD + +V AS+ AKVTRD + GW++E
Sbjct: 149 EVYVDALGRTTSYEAYLSSLFPDIAFTVQAKADLTFKIVGAASVAAKVTRDAWIDGWVYE 208
Query: 75 ETAEN-MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 132
E A + GSGYP DP+T+AW+ FG+PS RFSW T KD V W
Sbjct: 209 ERAPGKWAQETGSGYPSDPKTQAWIRSSLEPTFGYPSFARFSWATIKVALEKDGHAVEWI 268
Query: 133 SDEMDEDV-----SSRRSGKRQLKLSDIGFSS 159
D V ++ R R L D+ SS
Sbjct: 269 DDGQASLVQAFTGATGRDKDRCLVTKDLCLSS 300
>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
Length = 414
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD L+
Sbjct: 253 ITAIYVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRDLNLK--- 309
Query: 73 FEETAENMHRN--FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC 119
+ N+ +N GSGYP DP T WL + IFG+ +RFSW T
Sbjct: 310 YANQHINLLKNHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTA 359
>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 326
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW
Sbjct: 160 ICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGW 219
Query: 72 IFEETAENMHRNF----------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ E + + GSGYP DP+T+A+L +FG+ +VRFSW T
Sbjct: 220 VDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWAT 276
>gi|406695841|gb|EKC99140.1| hypothetical protein A1Q2_06544 [Trichosporon asahii var. asahii
CBS 8904]
Length = 300
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 14/127 (11%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R+ + + + ++D +G ++ +Q KLS FP+IKF+V KADSL+ +V ASIVAKVT
Sbjct: 127 RAALDRGINVQECFVDALGPSQVWQDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAKVT 186
Query: 64 RDRTLRGWI------------FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSL 111
RDR + GW+ +E AE + R GSGYP DP+T+A+L +FG+ +
Sbjct: 187 RDRYIEGWVDAEGPMPGSAGAGDEEAEELIR--GSGYPSDPKTQAFLRQQLDPVFGYRGM 244
Query: 112 VRFSWGT 118
VRFSW T
Sbjct: 245 VRFSWAT 251
>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
Length = 229
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ + ++DTVG+ + Y +L++ F IKF V+KKAD+LY ASI AKV RD ++ W
Sbjct: 117 VVEAFVDTVGNPDSYSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARW 176
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
++E + +FGSGYP DP AWL + H +FG+P+ RFSW + +D
Sbjct: 177 TYDEPGVD-DLDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAKARLRD 229
>gi|343427877|emb|CBQ71403.1| related to 35 kDa ribonuclease H [Sporisorium reilianum SRZ2]
Length = 464
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 48/176 (27%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ ++Y+DTVGDA+ Y L+ FP +K+ V+ KAD++YP+V ASI AKVTRDR +
Sbjct: 179 VTEIYVDTVGDAKSYARLLASHFPRHPHVKWTVTSKADAIYPIVGAASIAAKVTRDRCVE 238
Query: 70 GWIFEET----------------AENMHRN----------------FGSGYPGDPETKAW 97
GW + E E M R GSGYPGDP T A+
Sbjct: 239 GWRYAEQPVRTECVLGDATNVLHGEAMERKRKECDDDVDVWTSMGALGSGYPGDPNTVAY 298
Query: 98 LTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLS 153
L +FG+P +VRFSW T + +DE V+ GKR + S
Sbjct: 299 LKRTLDPVFGWPGIVRFSWATAKTM-------------LDEKVAPTLGGKRLTRTS 341
>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
Length = 341
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD------- 65
+ +VY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 172 VKEVYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICY 231
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-- 123
R++ E+ +GSGYP D + WL + +FG+ RFSWGT
Sbjct: 232 RSMMEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLES 291
Query: 124 KDIVEVLWESDEMDE 138
K ++V W +E DE
Sbjct: 292 KTSIKVDWPVEEDDE 306
>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 79/153 (51%), Gaps = 19/153 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLR 69
I +Y DTVG + KYQ ++ F IK V KAD LYPVVS ASI AKVTRD L
Sbjct: 120 IVHIYCDTVGPSGKYQMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLD 179
Query: 70 GWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
WI+EE N+ + G GYP D +T W+ +FG+P+LVRF W T K I+E
Sbjct: 180 NWIYEE--RNIQTKQVGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE 233
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSK 161
E V +R Q K +G SK
Sbjct: 234 ---------EKVPMKRPFPYQNKQDVVGVIQSK 257
>gi|402224753|gb|EJU04815.1| ribonuclease H-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 312
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I Q+++D +G + YQ L FPS + V KADS+Y +V AS+ AK RD + W+
Sbjct: 156 ITQIFVDALGPSVPYQKYLQSLFPSAEVTVCPKADSIYEIVGAASVAAKTCRDAWMESWV 215
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
+EE + GSGYP DP+T+AW+ + FG+P LVRFSW
Sbjct: 216 WEEEGMPPGQELGSGYPSDPKTQAWIANRLEKTFGYPRLVRFSWA 260
>gi|425778544|gb|EKV16668.1| Ribonuclease [Penicillium digitatum Pd1]
Length = 333
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 12/152 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 168 VREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMY 227
Query: 73 -----FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFKD 125
E++ + +GSGYP D + WL + +FG+ S RFSWGT K
Sbjct: 228 EAVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKG 287
Query: 126 IVEVLWESDE-----MDEDVSSRRSGKRQLKL 152
V W +E +DE + S GK K+
Sbjct: 288 GARVDWPDEEEGAPRLDEFLLSSAPGKSTGKV 319
>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
Length = 343
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 15/136 (11%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------ 68
+VY+DT+G+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 175 EVYIDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEA 234
Query: 69 ----RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF- 123
RG + +E A + +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 235 LVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLE 291
Query: 124 -KDIVEVLWESDEMDE 138
K ++V W DE +E
Sbjct: 292 SKRGIKVDWPVDEDNE 307
>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
Length = 1493
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 10/150 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RG 70
++Y+D +G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 182 EIYIDALGNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYES 241
Query: 71 WIFEETAENM----HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 126
++ ++ + M ++GSGYP D WL + IFG+ S RFSWGT T D+
Sbjct: 242 YMNKDGDQKMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGT-TKDMLDL 300
Query: 127 VEVLWESD-EMDEDVSSRRSGKRQLKLSDI 155
+ + D ++ED +R++G R L+ S++
Sbjct: 301 KGIAAKVDWPIEEDDETRKTGIRNLEFSEL 330
>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
gi|365763336|gb|EHN04865.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSIPIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
Length = 174
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ +VY+DTVG A KY+AKL+Q F +IKF V+ KADSLY VS ASIVAK RD +
Sbjct: 20 VSEVYIDTVGPAAKYEAKLNQTFNFTNIKFKVAPKADSLYKCVSAASIVAKTHRDAIIEQ 79
Query: 71 WIFEETA--ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDI 126
+EE + + GSGYP DP T +L +FGFP+ +RFSW T + K
Sbjct: 80 HPWEEPCMQDRLIGKLGSGYPSDPMTVQFLESVMDPVFGFPTFIRFSWSTASRMLQEKQA 139
Query: 127 VEVLWESD 134
V+W+++
Sbjct: 140 APVIWKNE 147
>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
Length = 307
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSIXIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD------- 65
+ +VY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 172 VKEVYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICY 231
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-- 123
R++ E +GSGYP D + WL + +FG+ RFSWGT
Sbjct: 232 RSMMKHCNAMEPERSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGLECRFSWGTARELLES 291
Query: 124 KDIVEVLWESDEMDE 138
K ++V W +E DE
Sbjct: 292 KTSIKVDWPVEEDDE 306
>gi|449300186|gb|EMC96198.1| hypothetical protein BAUCODRAFT_122230 [Baudoinia compniacensis
UAMH 10762]
Length = 335
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L + +VY+DT+G YQ +L + FPS+ V+KKADSLYP VS AS+ AKVTRD +
Sbjct: 167 DLGVNVCEVYIDTIGPPATYQKRLERIFPSLSITVAKKADSLYPCVSAASVCAKVTRDAS 226
Query: 68 LRGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
L + E A+ +GSGYP D WL + H +FG+ RFSWGT
Sbjct: 227 LDVLYSTYAEIADCGEMAWGSGYPSDGRCTTWLKGNMHPLFGWGHECRFSWGT 279
>gi|425774265|gb|EKV12578.1| Ribonuclease [Penicillium digitatum PHI26]
Length = 333
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 168 VREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMY 227
Query: 73 -----FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
E++ + +GSGYP D + WL + +FG+ S RFSWGT + V
Sbjct: 228 EAVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKV 287
Query: 128 --EVLWESDE-----MDEDVSSRRSGKRQLKL 152
V W +E +DE + S GK K+
Sbjct: 288 GARVDWPDEEEGAPRLDEFLLSSAPGKSTGKV 319
>gi|401825683|ref|XP_003886936.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
gi|392998093|gb|AFM97955.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
Length = 239
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 10/103 (9%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DT+GD EKY++KL+ +P +FVV KKADS + VVSGASIVAKV RD +
Sbjct: 122 VYVDTLGDCEKYKSKLNASYP-YRFVVEKKADSKFQVVSGASIVAKVQRDVLI------- 173
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ GSGYP DP+T WL + +++FGFP VR+SW T
Sbjct: 174 --SEFGNDLGSGYPSDPDTVEWLKRNANVVFGFPPGVRYSWST 214
>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
6054]
gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQAKL + FP + V+KKADS+YP+VS AS++AKVTRD +R +
Sbjct: 187 VKKIYVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYN 246
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEV 129
H+ GSGYP DP T WL + +FG+ +RFSW T D VEV
Sbjct: 247 HNLDVLKGHK-LGSGYPSDPNTSKWLNGNVDKVFGWCYGFIRFSWQTAKDSLVKHDGVEV 305
Query: 130 LWESDEMDED 139
++E + + +D
Sbjct: 306 IYEDECVKQD 315
>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R +L + +V++DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAKVT
Sbjct: 179 REVLDLGVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVT 238
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
RD + + ++ A + GSGYP DP T WL + +FG+ LVRF W T
Sbjct: 239 RDLNIH-YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKDSL 297
Query: 124 KDI--VEVLWESD 134
K+ V V++E+D
Sbjct: 298 KNHHGVSVVYEAD 310
>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
gi|349580865|dbj|GAA26024.1| K7_Rnh201p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 307
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSILIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
Length = 307
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF----KDIVEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + KD + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKDSILIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
Length = 345
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ ++Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD +
Sbjct: 172 VTEIYIDTIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCY 231
Query: 69 -----RGWIFEETAENMHRN--FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
R AEN N +GSGYP D +T WL + +FG+ + RFSWGT
Sbjct: 232 APYHSRALEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKE 291
Query: 122 HF---KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 168
K V V W E D D ++ GK ++ KR +EE+E
Sbjct: 292 LLEGKKPDVNVDWPIEDDGNDMRMTDFFLGKNDTAGDELVDWFGKRVTEEME 343
>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
Length = 341
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD------- 65
+ +VY+DT+G+ E YQ KL Q FPS++ V+KKADSLYP VS AS+ AKVTRD
Sbjct: 172 VKEVYIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICY 231
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-- 123
R++ E+ +GSGYP D + WL + +FG+ RFSWGT
Sbjct: 232 RSMMEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLES 291
Query: 124 KDIVEVLWESDEMDE 138
K ++V W +E DE
Sbjct: 292 KTSIKVDWPVEEDDE 306
>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
Length = 363
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 13/117 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L
Sbjct: 193 IREVYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--F 250
Query: 73 FEETAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 251 CHEAVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
Length = 356
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++++DTVG YQAKL FP I+ V+KKADS+YP+VS AS+VAKVTRD+ + +
Sbjct: 196 ISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTRDKNIAYYN 255
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC 119
H+ GSGYP DP TK WL + IFG+ RFSW T
Sbjct: 256 NHLDILKGHK-LGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATA 302
>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
Length = 363
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 13/117 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L
Sbjct: 193 IREVYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--F 250
Query: 73 FEETAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 251 CHEAVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
Length = 343
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 18/143 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ +VY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 173 VKEVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCY 232
Query: 69 ------RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RG + +E A + +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 233 EALVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTAREL 289
Query: 123 FKDI--VEVLWESDEMDEDVSSR 143
+ ++V W +DEDV ++
Sbjct: 290 LESNRGIKVDW---PVDEDVEAQ 309
>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 343
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 177 VREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALE-VM 235
Query: 73 FEETAENMH------RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFK 124
+E + H +GSGYP D + WL + +FG+ + RFSWGT K
Sbjct: 236 YEAVLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLEMK 295
Query: 125 DIVEVLWESDE------MDEDVSSRRSGKRQLKL 152
V W DE +DE + S GK K+
Sbjct: 296 GGARVDWPDDEEEGAHRLDEFLLSSAPGKSTGKV 329
>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
Length = 307
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|443898899|dbj|GAC76232.1| ribonuclease HI [Pseudozyma antarctica T-34]
Length = 493
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 34/207 (16%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ ++Y+DTVGD + Y LS FP IK+ V+ KAD++YP+V ASI AKVTRDR +
Sbjct: 192 VTEIYVDTVGDPKSYARLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIE 251
Query: 70 GWIF-EETAENMHR------------------------------NFGSGYPGDPETKAWL 98
W + E+ A H GSGYPGDP T A+L
Sbjct: 252 NWKYAEQPAPAPHTVLGDSTNRPAASVGEPTKRRIDSDVWDRMGALGSGYPGDPNTVAYL 311
Query: 99 TDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFS 158
+FG+P +VRFSW T + ++ ++ S + + + +R + + S I +
Sbjct: 312 KRTLDPVFGWPGIVRFSWATAKTMLEEKIKPATASLDTEPVLGGKRLTRSLSRTSSIADA 371
Query: 159 SSKRRSEEIESSGKGRCKFLEARKLEQ 185
++ +S+ S + L L Q
Sbjct: 372 TTALQSDAEASVAATQAVSLYGTPLPQ 398
>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
gi|1730743|sp|P53942.1|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(201); AltName: Full=RNase H(35);
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
gi|392296919|gb|EIW08020.1| Rnh201p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 307
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 69
+ +VY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 70 GWIFEET-AENMHR-----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
I+E+T AE+ R ++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 243 QAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 122 HFKDIVEVLWESDE 135
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
Length = 363
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 13/117 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L
Sbjct: 193 IREVYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALE--F 250
Query: 73 FEETAENMHR-----------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + R ++GSGYP D + +WL +H IFG+ + RFSWGT
Sbjct: 251 CHEAVYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGT 307
>gi|350636009|gb|EHA24370.1| hypothetical protein ASPNIDRAFT_209236 [Aspergillus niger ATCC
1015]
Length = 352
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 69
+ +VY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 70 GWIFEET-AENMHR-----NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
I+E+T AE+ R ++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 243 QAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 122 HFKDIVEVLWESDE 135
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|397640214|gb|EJK73996.1| hypothetical protein THAOC_04357 [Thalassiosira oceanica]
Length = 391
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRD 65
N I Y+DTVG E YQ KL + F +I FVV KKAD+ Y S AS+VAK RD
Sbjct: 191 NAGVRIDTAYVDTVGIPEAYQRKLERAFEGHNINFVVEKKADAKYAPCSAASVVAKEARD 250
Query: 66 RTLRGWIFEETAENMHRN----FGSGYPGDPETKAWLTDHKHI--IFGFPSLVRFSWGTC 119
R GW F E A GSGYP DP+ KAW+ + ++ FGFP VRFSWG
Sbjct: 251 RMTSGWKFTEAAFGYKPQGGFEVGSGYPSDPKCKAWMGRNCNVDSPFGFPDFVRFSWGPA 310
Query: 120 TSHFKDIVE 128
+ K++ E
Sbjct: 311 KNALKEVDE 319
>gi|344234362|gb|EGV66232.1| ribonuclease HII [Candida tenuis ATCC 10573]
gi|344234363|gb|EGV66233.1| hypothetical protein CANTEDRAFT_112777 [Candida tenuis ATCC 10573]
Length = 337
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 10/129 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
I +VY+DTVG EKYQAKLS F S IKF V+KKADSLYP+VS ASI+AKVTRD L
Sbjct: 193 IKRVYVDTVGPPEKYQAKLSNIFSSYNIKFTVTKKADSLYPIVSCASIIAKVTRDLYLH- 251
Query: 71 WIFEETAENMHRN--FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KD 125
+ + + R GSGYP DP T WL + + +FG+ ++R+SW T
Sbjct: 252 --YYNQKDPLLRGTEMGSGYPSDPRTSRWLKEQINPVFGWHFGVLRYSWQTAKDSLDKNK 309
Query: 126 IVEVLWESD 134
VEV +E++
Sbjct: 310 AVEVDYEAE 318
>gi|378734851|gb|EHY61310.1| ribonuclease H2 subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 340
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 19/143 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G E YQ +LSQ FP+IK V KKADSL+P VS AS+VAKVTRD + +
Sbjct: 168 VTEIYVDTIGKPEVYQRRLSQIFPTIKITVEKKADSLFPCVSAASVVAKVTRDVSCEALL 227
Query: 73 FEETAENMHRN-------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+N + +GSGYP D +WL ++GF + RFSWGT KD
Sbjct: 228 EAYVQQNPSSSSEEEPVTWGSGYPSDARCVSWLKSAIDPVWGFGNECRFSWGT----VKD 283
Query: 126 IVE--------VLWESDEMDEDV 140
++E W D DE++
Sbjct: 284 MLEQKGGPATRTDWPDDTADENM 306
>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
Length = 344
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DTVG YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 181 IQEIYVDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLY 240
Query: 73 FEETAENMHRN---FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E++ +GSGYP D +W+ + H +FG+ RFSWGT KD++E
Sbjct: 241 KARAPESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPECRFSWGTA----KDMLE 295
>gi|451846155|gb|EMD59466.1| hypothetical protein COCSADRAFT_30912 [Cochliobolus sativus ND90Pr]
Length = 343
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ ++Y+DT+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L
Sbjct: 172 VKEIYIDTIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCY 231
Query: 69 -----RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
R E + +GSGYP D T AW+ + +FG+ + RFSWGT
Sbjct: 232 EPYHSRTDPEAEDGAQVQAAWGSGYPSDARTSAWMKQNMDPLFGWGNETRFSWGTAKEML 291
Query: 124 ---KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 168
K V + W E D D ++ +GK + ++ KR +EE+E
Sbjct: 292 EGKKADVSIDWPAEDDGNDMRMTDFFNGKNEAIGDELVDWFGKRVTEEME 341
>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DTVG A YQ++L + FP I VSKKADS+YP+VS AS+ AKVTRD + G +
Sbjct: 178 IREIYVDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAI-GVL 236
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFK------- 124
E E GSGYPGD +TK WL +FG+ + RFSW T +
Sbjct: 237 VPEGEE-----IGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDMLEGGGKNGG 291
Query: 125 --DIVEVLW 131
VEV+W
Sbjct: 292 GGKGVEVVW 300
>gi|401840962|gb|EJT43568.1| RNH201-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 307
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 17/162 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPTSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+ + +VRFSW TC + D V +
Sbjct: 207 LKRDPDEVIGSGYPSDPKTVAWLKRNQTSLMGWTTDMVRFSWQTCQTLLDDPTRHSVIIK 266
Query: 131 WESDEMDEDVSSRRSGK---RQLKLSDIGFSSSKRRSEEIES 169
WE MD SR++ RQL+L + S+ ++R +++
Sbjct: 267 WEEQYMD----SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
Length = 596
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 67/128 (52%), Gaps = 24/128 (18%)
Query: 15 QVYLDTVGDAEKYQAKLSQ----RFPSIKFVVSKK-------------------ADSLYP 51
Q+Y+DTVG A YQ +L P+IK VV K AD YP
Sbjct: 421 QLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVTYP 480
Query: 52 VVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSL 111
+VS ASI AKVTRD L W E E + +FG GYPGD TKAWL IFGFPSL
Sbjct: 481 IVSAASICAKVTRDAVLTYWRHPEQRE-IDNDFGCGYPGDSSTKAWLRKVLDPIFGFPSL 539
Query: 112 VRFSWGTC 119
VRFSW T
Sbjct: 540 VRFSWSTA 547
>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
Length = 239
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 10/104 (9%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +GD EKY+A+L + +P KFV+ +KADS + +VSGASIVAKV RD +
Sbjct: 122 VYVDALGDCEKYKARLEEAYP-YKFVIEEKADSKFQIVSGASIVAKVQRDILI------- 173
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
N GSGYP DP+T WL + + +FGFP VR+SW T
Sbjct: 174 --SQFGSNLGSGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATV 215
>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
Length = 269
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 26/143 (18%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ ++++DTVG+ Y AKL Q FP I+++V++KAD+ YP+V ASI AKVTRD +
Sbjct: 31 VTKIFVDTVGEPNAYAAKLKQYFPRHSHIEWIVARKADATYPIVGAASIAAKVTRDACVD 90
Query: 70 GWIFEETAENMHRN-----------------------FGSGYPGDPETKAWLTDHKHIIF 106
W++ E +++H GSGYPGDP+T +L + +F
Sbjct: 91 HWMYAEPLQSVHHPEISKSSGKRKRGNNDDEETDIWATGSGYPGDPKTVRYLKETLDPVF 150
Query: 107 GFPSLVRFSWGTCTSHFKDIVEV 129
G+ LVRFSW T S ++ V V
Sbjct: 151 GWARLVRFSWATAKSMLEEPVHV 173
>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
Length = 273
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
I +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 105 IREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCH 164
Query: 69 ----RGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
+ F++ ++ ++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 165 EDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEML 224
Query: 122 HFKDIVEVLWESDEMDEDVSSR 143
K V+V W D DE+ R
Sbjct: 225 EMKGGVKVDWPPD--DENTQLR 244
>gi|340521578|gb|EGR51812.1| predicted protein [Trichoderma reesei QM6a]
Length = 347
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 176 VKEIYVDTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLF 235
Query: 73 FEE--------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
A + +GSGYP D +T AWL ++ H +FG+ RFSWGT +
Sbjct: 236 HARQAASAAAAAAADGPMEWGSGYPSDAKTVAWLRNNMHPLFGWGPECRFSWGTAKDMLE 295
Query: 125 ---DIVEVLWESDEMDEDVS 141
+ V++ W +D+ D + S
Sbjct: 296 SKGNGVKIEWPADDDDGETS 315
>gi|342879882|gb|EGU81115.1| hypothetical protein FOXB_08389 [Fusarium oxysporum Fo5176]
Length = 339
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 10/126 (7%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
L I ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 170 LGVNIQEIYVDTIGQPAAYQAKLQRVFPTAKITVAKKADSLYACVSAASVCAKVTRDAAL 229
Query: 69 RGWIFEETAENMHRN-----FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+FE A+ ++ +GSGYP D W+ + H +FG+ RFSWGT
Sbjct: 230 E-VLFEARADEDEKDGEGMAWGSGYPSDGRCVGWMKGNMHPVFGWGPECRFSWGTA---- 284
Query: 124 KDIVEV 129
KD++E
Sbjct: 285 KDMLEA 290
>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
Length = 321
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 11/121 (9%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ I ++Y+DTVG YQAKL RFP K V+KKADSL+P+VS ASI AKVTRD L
Sbjct: 168 YNISEIYVDTVGPPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHL-- 225
Query: 71 WIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDIVE 128
E T E + N+G GY D +T AWL + H +FG+ +VR+SW T K+++E
Sbjct: 226 ---ERTREALDIDNWGCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTA----KNLLE 278
Query: 129 V 129
+
Sbjct: 279 I 279
>gi|389624103|ref|XP_003709705.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|351649234|gb|EHA57093.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|440466622|gb|ELQ35881.1| ribonuclease H2 subunit A [Magnaporthe oryzae Y34]
gi|440489318|gb|ELQ68978.1| ribonuclease H2 subunit A [Magnaporthe oryzae P131]
Length = 355
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW- 71
+ ++Y+DTVG YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L
Sbjct: 177 VAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEVLY 236
Query: 72 --IFEETA-----ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ E A E+ +GSGYP D WL + H +FG+ + RFSWGT K
Sbjct: 237 KNVLSEIAKAEGGEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGT----VK 292
Query: 125 DIVE 128
D++E
Sbjct: 293 DMLE 296
>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 23/157 (14%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ +VY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L
Sbjct: 173 VREVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICY 232
Query: 69 ------RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
R + +++A +GSGYP D + +WL + +FG+ RFSWGT
Sbjct: 233 EALLKQRDTVKQDSAT---EGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTAREL 289
Query: 123 F--KDIVEVLWESDEMDE--------DVSSRRSGKRQ 149
K V V W +E +E +S+ R+G +
Sbjct: 290 LESKTGVRVDWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|344299617|gb|EGW29970.1| hypothetical protein SPAPADRAFT_63592 [Spathaspora passalidarum
NRRL Y-27907]
Length = 355
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +V++DTVG YQ KL FP I VV+KKADS+YP+VS AS+VAKVTRD ++ +
Sbjct: 195 VTEVFVDTVGPPITYQNKLKSLFPGIDIVVTKKADSIYPIVSTASVVAKVTRDLNIQ-YY 253
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEV 129
E + GSGYP DP T WL + +FG+ +R+SW T + VEV
Sbjct: 254 NESLPILQNHALGSGYPSDPNTSKWLNSNVDPVFGWCFGFIRYSWQTAKDSLVKNNAVEV 313
Query: 130 LWE 132
++E
Sbjct: 314 IYE 316
>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871226|gb|EIT80391.1| ribonuclease HI [Aspergillus oryzae 3.042]
Length = 363
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
I +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 195 IREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCH 254
Query: 69 ----RGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
+ F++ ++ ++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 255 EDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEML 314
Query: 122 HFKDIVEVLWESDEMDEDVSSR 143
K V+V W D DE+ R
Sbjct: 315 EMKGGVKVDWPPD--DENTQLR 334
>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
Length = 351
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
I +VY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 IREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCH 242
Query: 69 ----RGWIFEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
+ F++ ++ ++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 243 EDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEML 302
Query: 122 HFKDIVEVLWESDEMDEDVSSR 143
K V+V W D DE+ R
Sbjct: 303 EMKGGVKVDWPPD--DENTQLR 322
>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L
Sbjct: 163 VTEIYIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV-C 221
Query: 73 FE--------ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF- 123
+E E ++ +GSGYP D T WL + +FG+ S RFSWGT
Sbjct: 222 YEPYHHRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELLE 281
Query: 124 --KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 168
K V V W E D D ++ GK + ++ KR +EE+E
Sbjct: 282 GKKADVSVDWPVEDDSNDMRMTDFFVGKNESVSDELVDWFGKRVTEEME 330
>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
Length = 366
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++
Sbjct: 206 ISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--F 263
Query: 73 FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVE 128
+ E + + GSGYP DP T WL + +FG+ +RFSW T + E
Sbjct: 264 YNENLPLLQGQKLGSGYPSDPNTNKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAE 323
Query: 129 VLWE 132
V++E
Sbjct: 324 VVYE 327
>gi|11387103|sp|Q9P5X8.1|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
Length = 317
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 9/116 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 160 VTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL---- 215
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + +GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 216 -EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLE 266
>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
Length = 304
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ VY+DTVG YQ KL + FP ++ V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 119 VTDVYVDTVGPPATYQKKLERVFPGLRITVAKKADSLYPCVSAASVCAKVTRDVAL-AVL 177
Query: 73 FEE--TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ A ++GSGYP D AWL + H +FG+ RFSWGT KD++E
Sbjct: 178 YRRYGAASASEPDWGSGYPSDGRCTAWLRRNIHPVFGWGPECRFSWGTA----KDLLE 231
>gi|390595476|gb|EIN04881.1| ribonuclease H2 subunit A [Punctularia strigosozonata HHB-11173
SS5]
Length = 341
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 78/171 (45%), Gaps = 45/171 (26%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+D +G EKY+ LS FP I V KADSL+ +V AS+ AKVTRD L W+
Sbjct: 145 LTEVYVDALGPPEKYEKYLSSVFPGISITVRNKADSLFKIVGAASVAAKVTRDECLENWL 204
Query: 73 FEETAE------NMHRN----------------------------------FGSGYPGDP 92
FEE E +H GSGYPGDP
Sbjct: 205 FEEGGEPRPIPRTVHEAPEETPLVEHPSDADQSGAQKDVDMESTQDPWGSVLGSGYPGDP 264
Query: 93 ETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV-EVLWESDEMDEDVSS 142
+T AW+ +FG+PS+ RFSW T + EV W MDE +S
Sbjct: 265 KTVAWMDCSLDPVFGYPSVARFSWSTIKNRLAQKAHEVKW----MDEGQAS 311
>gi|393241381|gb|EJD48903.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 318
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+D +G ++ YQ LS FP I F V KAD+ + +V AS+ AKVTRD + WIF+
Sbjct: 144 HVYVDALGSSKTYQDYLSSVFPGIAFDVRPKADATFKIVGAASVAAKVTRDAWIENWIFD 203
Query: 75 ETAENMHRNF--------------------GSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
E ++++ + GSGYP DP+T+ WL + FGFPS+VRF
Sbjct: 204 ELSKHVPGDVDADEKDIAAPMAPAWATAETGSGYPSDPKTQGWLRNSLEPTFGFPSVVRF 263
Query: 115 SWGTCTSHF-KDIVEVLWESDEMDEDVSS 142
SW T KD V W D V S
Sbjct: 264 SWATAKVALEKDGHAVKWTDDNQSSLVKS 292
>gi|407917906|gb|EKG11206.1| Ribonuclease HII/HIII [Macrophomina phaseolina MS6]
Length = 332
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+DT+G YQ KL + FP+++ V+KKADSLYP VS AS+ AKVTRD L +E
Sbjct: 171 EIYIDTIGSPAVYQKKLERIFPTVQITVAKKADSLYPCVSAASVCAKVTRDAALD-VCYE 229
Query: 75 ETAEN-----MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI--- 126
A + +GSGYP D WL + +FG+ RFSWGT +D
Sbjct: 230 TYASSDGETVAADGWGSGYPSDARCSGWLKRNMDPLFGWGPECRFSWGTAKDMLEDKKTG 289
Query: 127 VEVLWESDEMD-EDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 167
++V W D+ D ++S+ SG + ++ KR SEE+
Sbjct: 290 LKVEWPVDDEDGMNISAYFSGGQDDGGDELSNWFGKRVSEEV 331
>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 84/156 (53%), Gaps = 21/156 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L I
Sbjct: 173 VREVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALE--I 230
Query: 73 FEET---------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
E ++ +GSGYP D + +WL + +FG+ RFSWGT
Sbjct: 231 CYEALLKQRDTVKQDSTTEGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELL 290
Query: 124 --KDIVEVLWESDEMDE--------DVSSRRSGKRQ 149
K V V W +E +E +S+ R+G +
Sbjct: 291 ESKTGVRVDWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
Length = 427
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++
Sbjct: 267 ISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--F 324
Query: 73 FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVE 128
+ E + + GSGYP DP T WL + +FG+ +RFSW T + E
Sbjct: 325 YNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAE 384
Query: 129 VLWE 132
V++E
Sbjct: 385 VVYE 388
>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
Length = 431
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++
Sbjct: 270 ISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--F 327
Query: 73 FEETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVE 128
+ E + + GSGYP DP T WL + +FG+ +RFSW T + E
Sbjct: 328 YNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAE 387
Query: 129 VLWE 132
V++E
Sbjct: 388 VVYE 391
>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V++DTVG EKYQ KL + FP + V KAD+ YP+V ASI+AKVTRD+ + W E
Sbjct: 96 VFVDTVGKPEKYQDKLLRYFPQLSIKVESKADATYPIVGAASIIAKVTRDKLVHNWDHVE 155
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ N GSGYPGDP+TK W+ H IFG L FS+
Sbjct: 156 PSVNKSIEVGSGYPGDPKTKNWIRQHLDHIFGV-GLNSFSY 195
>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
Length = 362
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW- 71
+ +VY+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 194 VREVYIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCH 253
Query: 72 -------IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + E ++GSGYP D + WL H +FG+ + RFSWGT
Sbjct: 254 DAFQALQQLETSHEMATDSWGSGYPSDSKCVNWLRKHMDPVFGWGNECRFSWGT 307
>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 15/170 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L
Sbjct: 172 VTEIYIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV-C 230
Query: 73 FE---------ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+E E ++ +GSGYP D T WL + +FG+ S RFSWGT
Sbjct: 231 YEPYHNRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELL 290
Query: 124 ---KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 168
K V + W E D D ++ GK + ++ KR +EE+E
Sbjct: 291 EGKKADVSIDWPVEDDGNDMRMTDFFVGKNESVGDELVDWFGKRVTEEME 340
>gi|452986900|gb|EME86656.1| hypothetical protein MYCFIDRAFT_30484 [Pseudocercospora fijiensis
CIRAD86]
Length = 336
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW- 71
I +VY+DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 172 IREVYIDTIGKPEVYQKKLEKIFPALNITVAKKADSLYPCVSAASVCAKVTRDAALEVLY 231
Query: 72 -IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F +GSGYP D WL + +FG+ + RFSWGT
Sbjct: 232 TAFAGDGATTEMEWGSGYPSDARCSNWLKANMDPVFGWGNECRFSWGT 279
>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
Length = 337
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 17/164 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG +QA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 169 IREVYVDTVGQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALY 228
Query: 73 ---------FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
E A M +GSGYP D WL + H +FG+ RFSWGT
Sbjct: 229 GARRDGDGDGEGAAAGME--WGSGYPSDARCVGWLRRNMHPVFGWGPECRFSWGTA---- 282
Query: 124 KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 167
KD++E ++D V G ++++D + ++E+
Sbjct: 283 KDMLETKGGGVKVDWPV--EEEGGDSMRVTDFFVAGRGEETDEL 324
>gi|358368996|dbj|GAA85612.1| ribonuclease HI large subunit [Aspergillus kawachii IFO 4308]
Length = 353
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 11/134 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 69
+ +VY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 70 GWIFEETAEN------MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-- 121
I+E+ + +++GSGYP D + WL + IFG+ + RFSWGT
Sbjct: 243 QAIYEDVRSEDASEAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 122 HFKDIVEVLWESDE 135
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|367054002|ref|XP_003657379.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
gi|347004645|gb|AEO71043.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
Length = 366
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 76/151 (50%), Gaps = 28/151 (18%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD------- 65
+ ++Y+DT+G YQA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 180 VREIYVDTIGPPAAYQARLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALETLW 239
Query: 66 ----RTLRGWIFEETAENMHRN-----------FGSGYPGDPETKAWLTDHKHIIFGFPS 110
R + G + AE + +GSGYP D +WL H H +FG+
Sbjct: 240 KARGRAVNGAGVDVGAEGQEQEDKEADDDKGMAWGSGYPSDGRCVSWLKGHMHPVFGWGP 299
Query: 111 LVRFSWGTCTSHFKDI------VEVLWESDE 135
RFSWGT + V+V W DE
Sbjct: 300 ECRFSWGTAKDMLEAAPAKGGGVKVEWPVDE 330
>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 339
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 11/136 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +VY+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 174 VREVYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALE-LC 232
Query: 73 FEET--------AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--H 122
+EE ++ +GSGYP D + WL + +FG+ + RFSWGT
Sbjct: 233 YEEIMKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLE 292
Query: 123 FKDIVEVLWESDEMDE 138
K V W +E ++
Sbjct: 293 LKGGARVDWPEEENEQ 308
>gi|380488296|emb|CCF37475.1| ribonuclease HII [Colletotrichum higginsianum]
Length = 341
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQAKL + FP+ K V KKADSLYP VS AS+ AKV+RD L
Sbjct: 179 VQEIYVDTVGQPAAYQAKLQRFFPATKITVEKKADSLYPCVSAASVCAKVSRDAALEVLY 238
Query: 73 FEETAENMHRNF--GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVE 128
E+ GSGYP D +W+ + H +FG+ RFSWGT K ++
Sbjct: 239 KARAPESAEEGMAWGSGYPSDGRCVSWMRSNMHPVFGWGPECRFSWGTAKDMLDGKGALK 298
Query: 129 VLWESDE 135
V W ++
Sbjct: 299 VDWPVED 305
>gi|367012081|ref|XP_003680541.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
gi|359748200|emb|CCE91330.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
Length = 299
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFPS+KF V+KKADSLY VVS AS+VAKVTRD I +
Sbjct: 150 VYVDTVGQPASYQKKLEQRFPSVKFTVAKKADSLYCVVSVASVVAKVTRDI-----IVDL 204
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 121
+ N GSGYP DP+T AWL ++ +FG+P +VRFSW TC +
Sbjct: 205 SRRNPEEIIGSGYPSDPKTTAWLRSNQSPLFGWPHEMVRFSWQTCQT 251
>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
Length = 362
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 71 --WIFEE--------------TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
W+ + TAE ++GSGYP D + WL + +FG+ RF
Sbjct: 244 ESWVNQRKRKRSLESGGGEAVTAEEETLSWGSGYPSDGKCIGWLKKDMNPLFGWGIECRF 303
Query: 115 SWGTCTS--HFKDIVEVLWESDE 135
SWGT K V+V W +E
Sbjct: 304 SWGTSKELLEIKSGVKVDWPVEE 326
>gi|440299535|gb|ELP92087.1| ribonuclease H2 subunit A, putative [Entamoeba invadens IP1]
Length = 274
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
V++DTVG KY+A ++ FP I V KAD+ YPVVSGASIVAKVTRD L WI
Sbjct: 128 VFVDTVGPPAKYKAMIAHSFPQIDPECITVCSKADAKYPVVSGASIVAKVTRDVCLERWI 187
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
F+ET F GYP D T W+ + +FG+P+ VRF W T
Sbjct: 188 FKETHTEGFSGF--GYPTDLVTINWMKESYDPVFGYPNFVRFGWET 231
>gi|409048828|gb|EKM58306.1| hypothetical protein PHACADRAFT_182662 [Phanerochaete carnosa
HHB-10118-sp]
Length = 294
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 20/124 (16%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D +G + ++ LS FP I F V+ KADS + +VS AS+ AKVTRD + GW+FE
Sbjct: 142 EVYVDALGPPQAWEKALSTMFPGISFTVTAKADSKFKIVSAASVAAKVTRDAWIEGWMFE 201
Query: 75 ETAENMHR--------------------NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
E + GSGYPGDP+T AW+ FGFPSL RF
Sbjct: 202 EAYVSEEEEEEEEEGSAEKVMDETKWGGPIGSGYPGDPKTVAWIQSSLEPTFGFPSLARF 261
Query: 115 SWGT 118
SW T
Sbjct: 262 SWTT 265
>gi|367000307|ref|XP_003684889.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
gi|357523186|emb|CCE62455.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
Length = 308
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL +RFPSIKF V+KKADSLY VVS AS+VAKV+RD + E+
Sbjct: 160 VYVDTVGPPNSYQKKLEERFPSIKFTVAKKADSLYCVVSVASVVAKVSRDI-----LIEK 214
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD------IVE 128
+ GSGYP DP T AWL D++ +FG+P S+VRFSW TC + + +
Sbjct: 215 LKRSSDEKTGSGYPSDPNTVAWLRDNQRPLFGWPNSMVRFSWQTCKTLLVEDKYKVGSIP 274
Query: 129 VLWESD 134
+ WE D
Sbjct: 275 IEWEED 280
>gi|410083421|ref|XP_003959288.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
gi|372465879|emb|CCF60153.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
Length = 312
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N I VY+DTVG YQ KL RFP IKF V+KKADSLY VVS AS+VAKVTRD
Sbjct: 142 NQGVTIEHVYVDTVGPPNTYQKKLETRFPGIKFTVAKKADSLYCVVSVASVVAKVTRDLL 201
Query: 68 LRGWIFEETAENMHRN-------FGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC 119
+ + E++ N+ + GSGYP DP TK WL + +FG+P +VRFSW TC
Sbjct: 202 VEA-LEEDSTINIRDHTTGEQCPVGSGYPSDPRTKVWLRQQQTPLFGWPLEMVRFSWQTC 260
Query: 120 TSHFKDI------VEVLWESD 134
+ D VE+ WE D
Sbjct: 261 QTLLDDNAKTGKGVEIQWEED 281
>gi|453087271|gb|EMF15312.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 374
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 27/162 (16%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L I +Y+DT+G E YQAKL + FP++K V+KKADSL+P VS AS+ AKVTRD
Sbjct: 185 DLKINIQHIYIDTIGKPEIYQAKLEKIFPAVKITVAKKADSLFPCVSAASVCAKVTRDAA 244
Query: 68 LRGWIFE-----------ETAE----NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLV 112
L + ++AE +GSGYP D WL ++ +FG+ +
Sbjct: 245 LEVLYMKSAEEEERRRRNDSAEVKTTTTTMAWGSGYPSDVRCANWLKNNMDPVFGWGNEC 304
Query: 113 RFSWGTCTSHFKDIVEVL-------W-ESDEMDEDVSSRRSG 146
RFSWGT K+++EV W E+D+ +E+ + + +G
Sbjct: 305 RFSWGTA----KELLEVRGAPCRVDWPEADDAEENDNMKLTG 342
>gi|358396936|gb|EHK46311.1| hypothetical protein TRIATDRAFT_6664, partial [Trichoderma
atroviride IMI 206040]
Length = 334
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 23/145 (15%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKV+RD L
Sbjct: 161 IKEIYVDTIGPPASYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVSRDAALEKLF 220
Query: 73 F------------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
E E +GSGYP D +T WL ++ H +FG+ RFSW T
Sbjct: 221 HARQVATAVANGEEVPVEEGTMEWGSGYPSDSKTSTWLRNNMHPLFGWGPECRFSWSTA- 279
Query: 121 SHFKDIVE-------VLWESDEMDE 138
KD++E V W +DE E
Sbjct: 280 ---KDLLEGKGNGVKVEWPADEDGE 301
>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 339
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 89/172 (51%), Gaps = 23/172 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ +VY+DTVGD E+YQ KLS F VV KKAD++YP+ S ASI AKV RDR +
Sbjct: 165 VKEVYVDTVGDPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVE 224
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-HFKDIVE 128
I + + GSGYPGD +T WL +F FP +RFSW T K +E
Sbjct: 225 EDI------SYYPEVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKKRALE 278
Query: 129 VLWESDEM----------DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 170
W DE D + S RR+ + L+ F+++KR +I +S
Sbjct: 279 FDWHDDEYLEGNDENKPGDNNSSGRRASQPSLQSM---FNAAKRARRKIFTS 327
>gi|396081059|gb|AFN82678.1| ribonuclease HII [Encephalitozoon romaleae SJ-2008]
Length = 239
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 10/103 (9%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G+ EKY+A+L +++P + FVV K+ADS + +VSGASIVAKV RD +
Sbjct: 122 VYVDALGNCEKYKARLKKKYPYM-FVVEKRADSRFQIVSGASIVAKVQRDLMI------- 173
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ GSGYP DP T WL + + +FGFP VR+SW T
Sbjct: 174 --SEFGNDLGSGYPSDPSTIRWLKRNTNAVFGFPPGVRYSWST 214
>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
Length = 286
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V++D +G Y+ LSQRFP IKF V+ KADS + +V AS+ AKVTRD +
Sbjct: 140 VFVDALGPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDALI------- 192
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
A GSGYP DP+TKAWL FGFP VRFSW T
Sbjct: 193 DASRFPAERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWAT 235
>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I VY+DTVG YQ KL RFPSIKF V+KKADSLY VVS AS+VAKVTRD +
Sbjct: 154 IDHVYVDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRD-----LL 208
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD----IV 127
E GSGYP DP+T AWL ++ + G+P +VRFSW TC + KD V
Sbjct: 209 IESLRRTPDEIMGSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQTCQTLLKDKSTGSV 268
Query: 128 EVLWESD 134
+ W+ D
Sbjct: 269 SIKWDED 275
>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
Length = 361
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 21/145 (14%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 71 --WIF--------------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
W+ E TAE + +GSGYP D + WL + +FG+ RF
Sbjct: 244 ESWLNQREKQRAVATGEDEESTAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGYECRF 302
Query: 115 SWGTCTS--HFKDIVEVLWESDEMD 137
SWGT K ++V W ++E D
Sbjct: 303 SWGTSKELLEIKSGLKVDWPTEEDD 327
>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
Length = 344
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 22/147 (14%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-W 71
+ ++Y+DT+G YQAKL++ FP+ K V+KKADSLYP VS AS+ AKVTRD L W
Sbjct: 175 VREIYVDTIGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLW 234
Query: 72 ----IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
E +GSGYP D WL + H ++G+ RFSWGT KD++
Sbjct: 235 KARGGGGEEGVEETMAWGSGYPSDGRCVTWLKSNMHPVWGWGPECRFSWGTA----KDMI 290
Query: 128 E----------VLWESDEMDEDVSSRR 144
E V W +DED ++R
Sbjct: 291 EATPAKGGGVNVEW---PVDEDADTQR 314
>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
Length = 361
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 21/145 (14%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 71 --WIFE--------------ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
W+ + TAE + +GSGYP D + WL + +FG+ + RF
Sbjct: 244 ESWLNQREKQKTLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRF 302
Query: 115 SWGTCTS--HFKDIVEVLWESDEMD 137
SWGT K ++V W ++E D
Sbjct: 303 SWGTSKELLEVKSGLKVDWPAEEDD 327
>gi|341039044|gb|EGS24036.1| hypothetical protein CTHT_0007470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 363
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 29/140 (20%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G YQAKL + FP +K V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 178 VTEIYVDTIGHPATYQAKLERVFPGVKITVAKKADSLYPCVSAASVCAKVTRDAALE--V 235
Query: 73 FEETAENMHRN-----------------------FGSGYPGDPETKAWLTDHKHIIFGFP 109
E A+ R +GSGYP D +WL + H ++G+
Sbjct: 236 LWEAAKGRGRTPKGEDEMDVGEKRGESEESEGMAWGSGYPSDARCVSWLKANMHPVWGWG 295
Query: 110 SLVRFSWGTCTSHFKDIVEV 129
RFSWGT KD++E
Sbjct: 296 PECRFSWGTA----KDMLEA 311
>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 361
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 15/140 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
+ ++Y+D +G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 180 VKEIYIDALGNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLY 239
Query: 69 RGWIFEETAENM------HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
++ ++ + M ++GSGYP D AWL + IFG+ S RFSWGT T
Sbjct: 240 ESYVSKDGDQEMGGTEVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRFSWGT-TKD 298
Query: 123 FKDI----VEVLWESDEMDE 138
D+ +V W +E DE
Sbjct: 299 MLDLKGVAAKVDWPIEEDDE 318
>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329688|gb|AGE95958.1| ribonuclease HII family protein [Encephalitozoon cuniculi]
Length = 239
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
+Y+D +GD KY+ +L + +P +FVV ++ADS + VVSGASIVAKV RD + E
Sbjct: 122 IYVDALGDCRKYKERLEKDYP-YRFVVEERADSKFQVVSGASIVAKVQRD-----MLISE 175
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E++ GSGYP DPET WL + +++FGFP VR+SW T
Sbjct: 176 FGEDL----GSGYPSDPETIRWLRKNINVVFGFPPGVRYSWATV 215
>gi|440789557|gb|ELR10864.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 243
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ ++Y+D +G+ Y+A L + FP I VV KAD YP+VS ASIVAK RD +
Sbjct: 92 LAELYVDALGNCATYRATLQRLFPGICTIVVESKADVNYPIVSVASIVAKTLRDGITKNL 151
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD----IV 127
F+E ++RN+G+GYP P K WL + +FG S V+F+WG D +
Sbjct: 152 PFKECYITINRNYGNGYPSTPAVKDWLMRNLDPVFGLLSAVQFNWGPVKKALADPKNGVK 211
Query: 128 EVLWE 132
V WE
Sbjct: 212 RVTWE 216
>gi|452846013|gb|EME47946.1| hypothetical protein DOTSEDRAFT_167397 [Dothistroma septosporum
NZE10]
Length = 332
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 12/161 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
I +VY+DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 169 IREVYIDTIGRPETYQRKLERIFPALSITVAKKADSLYPCVSAASVCAKVTRDAALDVLY 228
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ EE + + +GSGYP D WL + + ++G+ + RFSWGT K+++E
Sbjct: 229 TSYATEEDSGEVA--WGSGYPSDVRCSNWLKANMNPMYGWGNECRFSWGTA----KEMLE 282
Query: 129 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
+ D G LKL+ + R +E+ +
Sbjct: 283 A--KGAPCRVDWPEPDDGTDNLKLTGFLMGAGDEREDELTT 321
>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 77/144 (53%), Gaps = 19/144 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 71 --WIF-------------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFS 115
W+ E T + +GSGYP D + WL + +FG+ RFS
Sbjct: 244 ESWLNQREKQRTLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFS 303
Query: 116 WGTCTS--HFKDIVEVLWESDEMD 137
WGT K ++V W ++E D
Sbjct: 304 WGTSKELLEIKSGLKVDWPAEEDD 327
>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
Length = 361
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 19/144 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD------- 65
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 66 ----------RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFS 115
RTL E T + +GSGYP D + WL + +FG+ RFS
Sbjct: 244 ESWLNQREKQRTLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFS 303
Query: 116 WGTCTS--HFKDIVEVLWESDEMD 137
WGT K ++V W ++E D
Sbjct: 304 WGTSKELLEVKSGLKVDWPAEEDD 327
>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ +VY+DTVGD E+YQ KLS F VV KKAD++YP+ S ASI AKV RDR +
Sbjct: 164 VKEVYVDTVGDPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVE 223
Query: 70 GWIF----EETAENMHRNF--GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS-H 122
I E + R+ GSGYPGD +T WL +F FP +RFSW T
Sbjct: 224 EEISYYPEGEGVATLCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIE 283
Query: 123 FKDIVEVLWESDEMDEDVSSRRSG 146
K +E W DE E R G
Sbjct: 284 KKRALEFDWHDDEYLEGNDENRPG 307
>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
Length = 342
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 68
I ++Y+DT+G YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 171 IQEIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALEVLW 230
Query: 69 --------RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
R ++ E+ +GSGYP D WL + H +FG+ RFSWGT
Sbjct: 231 KTRGRPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPECRFSWGTAK 290
Query: 121 SHFKDI--VEVLWESDE 135
+ V+V W D+
Sbjct: 291 DMLEGPKGVKVDWPVDD 307
>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
Length = 323
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 23/135 (17%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 184 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACY 243
Query: 71 --WIFE--------------ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
W+ + TAE + +GSGYP D + WL + +FG+ + RF
Sbjct: 244 ESWLNQREKQKTLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRF 302
Query: 115 SWGTCTSHFKDIVEV 129
SWGT K+++EV
Sbjct: 303 SWGT----SKELLEV 313
>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
Length = 304
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ VY+DTVG YQ KL FP KF V+KKADS+YP+VS AS+VAKVTRD I
Sbjct: 159 VGHVYVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDI-----I 213
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHF---KDIVE 128
+ + GSGYPGD +T WL + + G+ P +VRFSW TC + K +E
Sbjct: 214 LSQCKKTEDEILGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATMLANSKSTIE 273
Query: 129 VLWESDEM 136
+ WE D M
Sbjct: 274 IEWEEDAM 281
>gi|398406781|ref|XP_003854856.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
gi|339474740|gb|EGP89832.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
Length = 331
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DT+G YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 168 IREVYIDTIGQPAAYQKKLERIFPALDITVAKKADSLYPCVSAASVCAKVTRDAALDVLY 227
Query: 73 --FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ ++ +GSGYP D WL + +FG+ + RFSWGT
Sbjct: 228 SSYASADDDGLIAWGSGYPSDARCSNWLKSNMDPLFGWGNECRFSWGT 275
>gi|430812385|emb|CCJ30193.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 242
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%), Gaps = 13/119 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG + YQ KL Q FP +V++KADS+YP+VS ASI AKV+RD L
Sbjct: 80 IKEVYVDTVGPSSSYQIKLQQLFPQTNVIVTEKADSIYPIVSTASICAKVSRDNAL---- 135
Query: 73 FEETAENMHRNFGSGYPG--DPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVE 128
A ++GSGYP DP T WL IFG+P +VR+SW T KD++E
Sbjct: 136 --SKAAIHGESWGSGYPSDIDPITCKWLKYSMDPIFGWPYEIVRYSWQTA----KDLLE 188
>gi|346323837|gb|EGX93435.1| ribonuclease HI large subunit [Cordyceps militaris CM01]
Length = 338
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 171 VQEIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRDVALETLY 230
Query: 73 FEETAENMHRN--------FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ H+ +GSGYP D W+ + H +FG+ RFSWGT +
Sbjct: 231 EDRKDPADHQGDEDDGAPAWGSGYPSDGRCTGWMRGNLHPVFGWGPECRFSWGTAKDMLE 290
Query: 125 ---DIVEVLWESDEMDE 138
+ V+V W D+ E
Sbjct: 291 AKGNGVKVEWPVDDDGE 307
>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
musculus]
Length = 799
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 63/113 (55%)
Query: 1 MHDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 60
M R NL+ + + +A + I+ V KADSL+PVVS ASI A
Sbjct: 106 MLGRVKYNLNSLSHDTAAELIWNARDIPGSIITALSGIEVTVKAKADSLFPVVSAASIFA 165
Query: 61 KVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVR 113
KVTRD+ ++ W F E +++ ++GSGYP DP+TKAWL H +FGFP +
Sbjct: 166 KVTRDKAVKNWQFVEILQDLDSDYGSGYPSDPKTKAWLRRHVDPVFGFPQFAQ 218
>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
++ +VY+DTVGD +KYQAKL ++FP I+ VV KKADS YPVV GASIVAKV RD
Sbjct: 126 YLKEVYIDTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDE---- 181
Query: 71 WIFEETAENMHRNF--GSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKD-I 126
I EE + GSGY D TK +L +FG+ + VRFSW T D
Sbjct: 182 -IVEEIQSLKYSKLKMGSGYTSDKYTKDFLNKALDKVFGYHHTDVRFSWSTIKKILDDSA 240
Query: 127 VEVLW 131
V V W
Sbjct: 241 VSVEW 245
>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
Length = 342
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 20/145 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-- 70
+ +VY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 165 VKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEACY 224
Query: 71 --WIFE------------ETAENMH--RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
W+ + E E ++GSGYP D + WL +FG+ + RF
Sbjct: 225 DNWVNQRKRKRAQESTGDEATEQQEDVMSWGSGYPSDGKCIGWLKKDMDPLFGWGTECRF 284
Query: 115 SWGTCTSHF--KDIVEVLWESDEMD 137
SWGT K ++V W ++E D
Sbjct: 285 SWGTSKELLETKSGLKVDWPAEEED 309
>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973934|gb|EED92264.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 249
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
I Y+DTVG + Y++KL + F +I+F+V KKAD+ Y S AS+VAK +RD +
Sbjct: 104 IETAYIDTVGMPDAYRSKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIAN 163
Query: 71 WIFEETAENMH--RNFGSGYPGDPETKAWLTDHKHI--IFGFPSLVRFSWGTC 119
W + ET+ RNFGSGYP DP+ W+ ++ ++ FG+P VRFSWG
Sbjct: 164 WKWTETSYEPKDGRNFGSGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPA 216
>gi|403218559|emb|CCK73049.1| hypothetical protein KNAG_0M01960 [Kazachstania naganishii CBS
8797]
Length = 301
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 93/154 (60%), Gaps = 20/154 (12%)
Query: 6 GKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 65
G LH VY+DTVG YQ KL RFP +F V+KKADSL+ VVS AS+VAKVTRD
Sbjct: 146 GVKLH----HVYVDTVGPPVSYQKKLEDRFPQQRFTVTKKADSLFCVVSVASVVAKVTRD 201
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFK 124
I E+ + + GSGYP DP TK WL DH+ +FG+P+ +VRFSW TC + +
Sbjct: 202 ------ILVESLG--YADIGSGYPSDPRTKQWLRDHQMDLFGWPNHVVRFSWQTCRTLLE 253
Query: 125 DI---VEVLWESDEMDEDVSSRRSGKRQLKLSDI 155
V++ WE D +S++++ +Q +L +
Sbjct: 254 GNPHGVQIQWEEDF----ISTKKTMHKQWELQQL 283
>gi|396458422|ref|XP_003833824.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
Length = 357
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 23/130 (17%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR-GW 71
+ +Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L G+
Sbjct: 172 VTDIYIDTIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALEVGY 231
Query: 72 -----------------IFEETAENMHR-----NFGSGYPGDPETKAWLTDHKHIIFGFP 109
+ + ++GSGYP DP T+AWL + +FG+
Sbjct: 232 GKYHDHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWG 291
Query: 110 SLVRFSWGTC 119
+ R SWGT
Sbjct: 292 TECRHSWGTA 301
>gi|365987942|ref|XP_003670802.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
gi|343769573|emb|CCD25559.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Length = 299
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 10/133 (7%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
NL + VY+DTVG ++ YQ KL RFPS++F V+KKADSL+ VVS AS+VAKVTRD
Sbjct: 164 NLGVNLSHVYVDTVGPSQTYQKKLQDRFPSVEFTVTKKADSLFCVVSVASVVAKVTRDIL 223
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDI 126
+ E E + GSGYP D +T WL +++ ++FG+P +VRFSW TC + K
Sbjct: 224 VESLKRPEVDEII----GSGYPSDAKTTKWLRENQTLLFGWPKEMVRFSWQTCQTLLKKN 279
Query: 127 VE-----VLWESD 134
E + WE D
Sbjct: 280 DEANGLLIQWEED 292
>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|374108444|gb|AEY97351.1| FAER363Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 78/125 (62%), Gaps = 8/125 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+DTVG YQAKL QRFP+ K V+KKADS +PVVS AS+VAKVTRD L
Sbjct: 150 HVYVDTVGPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRDVWLHA--LR 207
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTCTSHFKD--IVEVLW 131
T +++ GSGYPGD +T AWL +FG+ P LVRFSW TC + + + + W
Sbjct: 208 PTPDDV---LGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTLLESDKAIRIEW 264
Query: 132 ESDEM 136
E D +
Sbjct: 265 EEDSL 269
>gi|342184180|emb|CCC93661.1| putative ribonuclease H [Trypanosoma congolense IL3000]
Length = 322
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ ++DTVG E YQ KLS RFP ++ VSKKA+ +P+V+ AS+VAK+ RD +
Sbjct: 147 MLCAAFIDTVGPPETYQQKLSGRFPHLRITVSKKAELKFPIVAAASVVAKLERDSHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSL---VRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P + VR SWG D
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMTWVRSHVHRFFVVPRVHKFVRLSWGPVVQLANDPET 257
Query: 126 IVEVLWESDEMDEDVSSRRS-----GKRQLKLS 153
V +++E D + V ++S GK+Q LS
Sbjct: 258 CVPIVFEEDAKSK-VEKKQSKGATDGKKQCLLS 289
>gi|361126847|gb|EHK98833.1| putative Ribonuclease H2 subunit A [Glarea lozoyensis 74030]
Length = 344
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R G N+ ++Y+DT+G+ YQ KL + FP+ V+KKADSLYP VS AS+ AKVT
Sbjct: 173 RQGVNVK----EIYIDTIGNPATYQRKLEKIFPTALVTVAKKADSLYPCVSAASVCAKVT 228
Query: 64 RDRTLRGWIFEETAE---------NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRF 114
RD L ++E E + +GSGYP D + WL + +FG+ S RF
Sbjct: 229 RDAALE-VLYESYLEPKDEEDEMEVVEPTWGSGYPSDAKCTTWLKRNMDPVFGWGSECRF 287
Query: 115 SWGT 118
SWGT
Sbjct: 288 SWGT 291
>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
[Aspergillus nidulans FGSC A4]
Length = 339
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DT+G+ YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L +E
Sbjct: 181 EVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVALD-VCYE 239
Query: 75 ETAEN--MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 129
EN + +GSGYP D + W+ + +FG+ + RFSWGT K+++EV
Sbjct: 240 VLKENGGVGDGWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTA----KEMLEV 292
>gi|402076046|gb|EJT71469.1| ribonuclease H2 subunit A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 373
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--- 69
+ ++Y+DTVG YQ +L + FP+ + V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 191 VAEIYVDTVGPPATYQKRLERVFPTARVTVAKKADSLYPCVSAASVCAKVTRDAALEVLY 250
Query: 70 ------------GWIFEETAE--NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFS 115
G E+ E N ++GSGYP D W+ + H +FG+ RFS
Sbjct: 251 KTVLRPPAAAPGGEEAEQDDEEGNEQASWGSGYPSDARCVTWMRRNMHPVFGWGPECRFS 310
Query: 116 WGTCTSHFKDI-------VEVLWESDEMDED 139
WGT + V+V W D+ E+
Sbjct: 311 WGTAKEMLEPTGTAKVASVKVDWPLDDDGEN 341
>gi|440638129|gb|ELR08048.1| hypothetical protein GMDG_02886 [Geomyces destructans 20631-21]
Length = 397
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 82/173 (47%), Gaps = 30/173 (17%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--- 69
+ ++Y+DT+G YQ KL + FP+ V+KKADSLYP VS AS+ AKVTRDR L
Sbjct: 214 VREIYIDTIGQPGPYQKKLERIFPTASITVAKKADSLYPCVSAASVCAKVTRDRALEVLY 273
Query: 70 ---GWIFEETA-------------ENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVR 113
G E+ A ++GSGYP D WL + +FG+ R
Sbjct: 274 EAYGGSNEDAAGKEDVTMGDSEDEPAPEADWGSGYPSDARCSTWLKRNIDPVFGWGPECR 333
Query: 114 FSWGTCTSHFKD----IVEVLWESDEMDEDVS------SRRSGKRQLKLSDIG 156
FSW T +D V W ++E DED S SGK Q ++G
Sbjct: 334 FSWSTTKDLLEDNKAMAAHVDWPAEE-DEDTHRVTDYFSADSGKEQKADDELG 385
>gi|401419840|ref|XP_003874409.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 316
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 76/149 (51%), Gaps = 19/149 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ Y+DTVG YQA+L+ RFP ++ V+KKA+S +P+VS AS+VAK RD +
Sbjct: 153 LCAAYVDTVGPPGTYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAKTARDAAI---- 208
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSL---VRFSWGTCTSHFKD---I 126
E + N GSGY DP T AWL H F F VR SWG D
Sbjct: 209 -----EALGENIGSGYLIDPRTMAWLRSPVHRCFAFSHAYDSVRQSWGPVVQLANDSAVC 263
Query: 127 VEVLWESDEMDEDVSSRRSG--KRQLKLS 153
V V++E D E+ S + G RQ LS
Sbjct: 264 VPVVFEQDP--EEASQQGGGGDNRQQNLS 290
>gi|400597529|gb|EJP65259.1| ribonuclease HII [Beauveria bassiana ARSEF 2860]
Length = 340
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 16/128 (12%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L +
Sbjct: 171 VQEIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRDVALEA-V 229
Query: 73 F-----------EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ E ++ +GSGYP D AW+ + H +FG+ RFSW T
Sbjct: 230 YRDRKDHPADHEEIDDDDTAMAWGSGYPSDARCTAWMRSNLHPVFGWGPECRFSWSTA-- 287
Query: 122 HFKDIVEV 129
KD++E
Sbjct: 288 --KDMLEA 293
>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
Length = 243
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I VY+D VG +Y A + + PSI + KAD+ YP+ ASIVAKV RDR
Sbjct: 110 IEHVYIDLVGPESQYAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDR------ 163
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
N+ +GSGYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 164 ------NIKPQWGSGYPSDPKTKKYLDKTCHGIYGFPTHIRHSWET 203
>gi|406864455|gb|EKD17500.1| ribonuclease HII [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 359
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 33/153 (21%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT----- 67
+ ++++DT+G+ E YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 181 VKEIFIDTIGNPETYQRKLQRIFPTAKVTVAKKADSLYPCVSAASVCAKVTRDAAMEVLY 240
Query: 68 ---------------LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLV 112
+ G + AE ++GSGYP D +WL +FG+
Sbjct: 241 DSYLSKTSDGEEDVEMEGTKMAKAAE--ESSWGSGYPSDARCTSWLKRSMDPVFGWGPEC 298
Query: 113 RFSWGTCTSHFKDIVEVL-------WESDEMDE 138
RFSWGT KD+++V W +E DE
Sbjct: 299 RFSWGTA----KDMLDVKGAAAKVEWPVEEDDE 327
>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
Length = 343
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG +QAKL + FP+ K V+KKADSL+ VS AS+ AKVTRD TL +
Sbjct: 182 VQEIYVDTVGPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLE--V 239
Query: 73 FEETAENMHRN---FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ + N +GSGY D W+ + H +FG+ RF WGT KD++E
Sbjct: 240 LSDAKGELTENGMGWGSGYSSDKRCTGWMKNSMHPLFGWGHECRFGWGTS----KDMLE 294
>gi|367034558|ref|XP_003666561.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
gi|347013834|gb|AEO61316.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 55/177 (31%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--- 69
+ ++Y+DT+G YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 176 VREIYVDTIGQPAAYQAKLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRDVALETLW 235
Query: 70 ---GW-----------------------------------IFEETAENMHRNFGSGYPGD 91
GW +E A +GSGYP D
Sbjct: 236 KAPGWKAGQVVGGGEEGEEKDGVEEEKEEERKEDEQQDQEEEQEQAGEASMAWGSGYPSD 295
Query: 92 PETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE----------VLWESDEMDE 138
AWL H +FG+ RFSWGT KDI+E V W ++E D+
Sbjct: 296 RRCVAWLKASMHPLFGWGPECRFSWGTA----KDILEAAPAKGGGVKVDWPANEDDD 348
>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723422|sp|Q10236.1|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe]
Length = 326
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L
Sbjct: 174 VTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL---- 229
Query: 73 FEETAENMHR--NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVEV 129
E A R N+GSGY D T WL + IFG+ +VR+SW T KD++E+
Sbjct: 230 --ECARESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTA----KDLLEL 283
>gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502]
gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit)
[Cryptosporidium hominis]
Length = 144
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE------NMHRNF--GS 86
FP I V KAD+L+P VSGASI+AKV RD L W + + E N N+ GS
Sbjct: 4 FPGIDITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 87 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 139
GYPGDP+TK +L +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKEFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 144
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE------NMHRNF--GS 86
FP I V KAD+L+P VSGASI+AKV RD L W + + E N N+ GS
Sbjct: 4 FPGINITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 87 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 139
GYPGDP+TK +L +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKDFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|366995529|ref|XP_003677528.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
gi|342303397|emb|CCC71176.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
Length = 299
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 15/145 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+DTVG YQ KL RFP + F V+KKADSLY VVS AS+VAKVTRD + E
Sbjct: 150 VYVDTVGPPASYQKKLEDRFPEVGAFTVAKKADSLYCVVSVASVVAKVTRDI-----LVE 204
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKD----IVEV 129
+ GSGYP DP+T WL + + +FG+P +VRFSW TC + KD + +
Sbjct: 205 SLKRSDDEIIGSGYPSDPKTVKWLRETQTPLFGWPIEMVRFSWQTCQTLMKDGNNGSIPI 264
Query: 130 LWESDEMDEDVSSRRSGKRQLKLSD 154
WE D ++S+++ +Q L D
Sbjct: 265 EWEEDF----INSKKNMAQQWTLDD 285
>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
Length = 252
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 61/124 (49%), Gaps = 24/124 (19%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G+ Y+ L F F + KAD+ Y VVS ASIVAK+ RD F
Sbjct: 114 VYIDALGNVSNYKKNLQAHF-KFNFTIEAKADATYEVVSAASIVAKINRDA-----FFSS 167
Query: 76 TAENMHRNF------------------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
N+H N+ GSGYP DP T+ WL D+ H I GF S+VR SW
Sbjct: 168 KTNNIHENYYTKLGYEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWS 227
Query: 118 TCTS 121
T S
Sbjct: 228 TIQS 231
>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
Length = 243
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ I VY+D V +Y A + + P++ + KAD YP+ ASIVAKVTRDR ++
Sbjct: 108 YEIEHVYIDLVSPESQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA 167
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+GSGYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 168 ------------QWGSGYPSDPKTKEYLDKACHSIYGFPAHIRHSWET 203
>gi|413916151|gb|AFW56083.1| hypothetical protein ZEAMMB73_828983 [Zea mays]
Length = 277
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 24/105 (22%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R ++ + + Y+DTVGD +KY+ KL+++F KFVV+KK DSLY VVSGASIVAK
Sbjct: 66 RKVLDMGVLLAEAYIDTVGDLKKYRIKLTEKFTGFKFVVAKKVDSLYTVVSGASIVAK-- 123
Query: 64 RDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF 108
+ G DP+TK WL DHKH++FGF
Sbjct: 124 ---NING-------------------ADPDTKRWLEDHKHLVFGF 146
>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
Length = 791
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 23/130 (17%)
Query: 7 KNLHFFIFQVYLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRD 65
+N + +V++DTVGD YQ+ L++ F +I+F V KKADSL+ VVS ASI AKVTRD
Sbjct: 126 QNKGAVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRD 185
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
R + W++E A + +FGSGYP DP +WGT +
Sbjct: 186 RVISDWMWESPALELPTDFGSGYPSDP----------------------NWGTVEPFNEK 223
Query: 126 IVEVLWESDE 135
V+V W D+
Sbjct: 224 AVKVEWPHDK 233
>gi|429962741|gb|ELA42285.1| ribonuclease HII [Vittaforma corneae ATCC 50505]
Length = 232
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G+ E+Y+ L + F S+ FV+ KADS Y VVSGASIVAKV RD ++ +
Sbjct: 117 VYIDGLGNNEEYKKTLKKYF-SLNFVIENKADSKYQVVSGASIVAKVVRDASVARY---- 171
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
N GSGY DP TK WL + GFP VR SW T
Sbjct: 172 -------NCGSGYTSDPITKEWLKSKYNKFLGFPDYVRHSWST 207
>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 354
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLR 69
I +Y DTVG ++KYQA ++ F +K V KAD LYPVVS ASI AKVTRD L
Sbjct: 120 IVHIYCDTVGPSKKYQAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLD 179
Query: 70 GWIFEETAENMH-RNFGSGYPGDPET 94
WI+EET N+ R G GYP D +T
Sbjct: 180 NWIYEET--NIQTRQVGCGYPSDVDT 203
>gi|403176171|ref|XP_003888919.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172134|gb|EHS64560.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 320
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 11/95 (11%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+L + + +Y+DT+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD
Sbjct: 177 DLQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAI 236
Query: 68 LRGWIFEETA-----------ENMHRNFGSGYPGD 91
+ WI E+ E+ + GSGYP D
Sbjct: 237 VSHWIHPESTHPQKRKSSQEDEDATTSLGSGYPSD 271
>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
Length = 243
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ I VY+D V +Y + + P+I + KAD+ YP+ ASI+AKVTRD+ ++
Sbjct: 108 YEIEHVYIDLVSPESQYATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK- 166
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+GSGYP DP+TK +L H I+GFP+ +R SW T
Sbjct: 167 -----------PQWGSGYPSDPKTKEYLDKTCHSIYGFPTHIRHSWET 203
>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans CBS 6340]
Length = 342
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 72/123 (58%), Gaps = 9/123 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL FPSIKF V+KKADSL+ VVS AS+VAKVTRD + E
Sbjct: 196 VYVDTVGPPATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRDV-----LIEL 250
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF---KDIVEVLW 131
GSGYP D +T AWL ++ +FG+P VRFSW T + D V + W
Sbjct: 251 LRARPDEVLGSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTLLDRNPDAVPIEW 310
Query: 132 ESD 134
E D
Sbjct: 311 EDD 313
>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
Length = 235
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
N + I +++D +G +K + L K V KADS YPVVSGASIVAKVTRD
Sbjct: 110 NAYTNIEGIFIDAIGTCDKLKEFLELNIKH-KCTVESKADSKYPVVSGASIVAKVTRDDL 168
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
L + +FGSGYP DP TK WLT + IFG+ VR++W T
Sbjct: 169 L---------SKFNISFGSGYPSDPVTKKWLTKEVNYIFGWGKSVRYTWNT 210
>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
Length = 569
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS AS+ AKV+RDR + W F
Sbjct: 398 EVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKVSRDRVISAWEFS 457
Query: 75 ETAENMHRNFGSGYP 89
E + GSGYP
Sbjct: 458 EDI-IFTKETGSGYP 471
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 37/49 (75%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
+VY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS AS+ AK T
Sbjct: 139 EVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKGT 187
>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 13 IFQVYLDTVGDAEKY----QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
I ++++DTVG + Y Q KL + VV +KADS Y VS ASI AKVTRD +
Sbjct: 141 ITEIFVDTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRI 200
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
I +E N + GSGYPGDP+TK +L + F +P VRFSW T + D
Sbjct: 201 T-LIQQEILPN--DSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTIIND 254
>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR +
Sbjct: 147 MLCGAYIDTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P VR SWG K+
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNKDV 257
Query: 126 IVEVLWESDEMDEDVSSRRS------GKRQLKLS 153
V +L+E D + R + GK+Q LS
Sbjct: 258 CVPILFEEDAKTKAEKKRATSGGSSDGKKQRLLS 291
>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR +
Sbjct: 147 MLCGAYIDTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P VR SWG K+
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDV 257
Query: 126 IVEVLWESDEMDEDVSSRRS------GKRQLKLS 153
V +L+E D + R + GK+Q LS
Sbjct: 258 CVPILFEEDAKTKAEKKRATSGGGSDGKKQRLLS 291
>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
Length = 366
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 4/68 (5%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
+SG N + +V++DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AKVT
Sbjct: 125 KSGVN----VTEVFVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVT 180
Query: 64 RDRTLRGW 71
RDR L W
Sbjct: 181 RDRMLVRW 188
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 142
FGSGYPGD ET A+L + +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 143 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|407835034|gb|EKF99119.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR +
Sbjct: 147 MLCGAYIDTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P VR SWG K+
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDV 257
Query: 126 IVEVLWESDEMDEDVSSRRS------GKRQLKLS 153
V +L+E D + R + GK+Q LS
Sbjct: 258 CVPILFEEDTKTKAEKKRATSGGGSDGKKQRLLS 291
>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
Length = 366
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 4/68 (5%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
+SG N + +V++DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AKVT
Sbjct: 125 KSGVN----VTEVFVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVT 180
Query: 64 RDRTLRGW 71
RDR L W
Sbjct: 181 RDRMLVRW 188
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 142
FGSGYPGD ET A+L + +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 143 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
Length = 282
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ VY+DTVG + YQA L ++FP ++ +VS+KAD+ +P+VS AS++AKV RDR LR W
Sbjct: 139 VVDVYVDTVGPKDPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNWT 198
Query: 73 FEETAENM 80
F E N+
Sbjct: 199 FPEGIVNV 206
>gi|340057120|emb|CCC51462.1| putative ribonuclease H [Trypanosoma vivax Y486]
Length = 378
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 97/188 (51%), Gaps = 31/188 (16%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG EKY++KLS RFP ++ VSK+A+S +P+V+ AS+VAKV RD +R
Sbjct: 203 MLCAAYVDTVGPPEKYESKLSGRFPHLRVKVSKQAESKFPIVAAASVVAKVKRDGYIR-- 260
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
+ + GSGYP DP+ AW+ H H F P + VR SW K+
Sbjct: 261 -------RLGVDVGSGYPSDPKAVAWVRSHVHRFFMVPRKYNFVRLSWSPVMQLGKEEGV 313
Query: 126 IVEVLWESDEMD--EDVSSRRS--GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEAR 181
+ +++E D E +SR S GKRQ LS G + +R S +
Sbjct: 314 CIPLVFEEDTKTKIEKKNSRGSNDGKRQTLLS-FGKAPPRRHS-----------VYAHLL 361
Query: 182 KLEQLTHF 189
KL+ ++HF
Sbjct: 362 KLKMISHF 369
>gi|146103342|ref|XP_001469539.1| putative ribonuclease H [Leishmania infantum JPCM5]
gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
Length = 316
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ Y+ T G YQ +L+ RFP ++ V+KKADS +P+VS ASIVAK TRD +
Sbjct: 153 LCAAYVGTAGPPATYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---- 208
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 109
E + N GS P DP T L H H F FP
Sbjct: 209 -----EALGENIGSRCPSDPRTMERLRSHVHRFFVFP 240
>gi|440493662|gb|ELQ76104.1| Ribonuclease HI [Trachipleistophora hominis]
Length = 414
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+D +G KY+ L Q FP I FVV KADS Y V GASIVAKV RD LR +
Sbjct: 298 ITKVYVDALGSTNKYEHILRQHFPHIPFVVEYKADSTYRCVGGASIVAKVVRDDLLRRFS 357
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
+ GSGYP D T WL+ ++ +VRF W
Sbjct: 358 VQ---------CGSGYPSDWRTVGWLSTNRE-----SEMVRFKWA 388
>gi|409078396|gb|EKM78759.1| hypothetical protein AGABI1DRAFT_92329 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 237
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D +G+ Y+ +LS+ FP I F V+ KADS + +V AS+ AKVTRD + W FEE
Sbjct: 148 VYVDALGNTTTYEKRLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIECWHFEE 207
Query: 76 TAEN----MHRNFGSGYP 89
TA N ++ FGSGYP
Sbjct: 208 TAGNDQVEWNKAFGSGYP 225
>gi|398024050|ref|XP_003865186.1| ribonuclease H, putative [Leishmania donovani]
gi|322503423|emb|CBZ38508.1| ribonuclease H, putative [Leishmania donovani]
Length = 316
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ Y+ T G YQ L+ RFP ++ V+KKADS +P+VS ASIVAK TRD +
Sbjct: 153 LCAAYVGTAGPPATYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---- 208
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 109
E + N GS P DP T L H H F FP
Sbjct: 209 -----EALGENIGSSCPSDPRTMERLRSHVHRFFVFP 240
>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
gi|189043625|sp|A6VGW0.1|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
Length = 239
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 126
+ IF E GSGYP DP+TK +L ++ H G P + R SW T + K+I
Sbjct: 178 EEYKEIFGE--------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEI 229
Query: 127 VE 128
E
Sbjct: 230 EE 231
>gi|407397482|gb|EKF27762.1| ribonuclease H, putative [Trypanosoma cruzi marinkellei]
Length = 289
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 12/104 (11%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+DTVG E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR +
Sbjct: 152 YIDTVGPPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI-------- 203
Query: 77 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWG 117
E + + GSGYP DP+ W+ H H F P VR SWG
Sbjct: 204 -ERLGIDVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWG 246
>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
Length = 264
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 EIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAAL------ 238
Query: 75 ETAENMHRNFGSGYPG--DPETKAW 97
E H+ G+ G D E AW
Sbjct: 239 EVMYEAHKAANGGHGGAEDGEGMAW 263
>gi|429964623|gb|ELA46621.1| ribonuclease HII [Vavraia culicis 'floridensis']
Length = 343
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 3 DRSGKNLHFF---IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 59
D GKN+ + V++D +G+ +KY L + FPS+ F + KADS+Y V GASI+
Sbjct: 214 DEIGKNVSLRRDGVENVFIDALGNTDKYLQILQRHFPSVPFTIKPKADSIYRCVGGASII 273
Query: 60 AKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
AKV RD L+ + E GSGYP D T WL ++ +VRF W
Sbjct: 274 AKVVRDDLLKQFSAE---------CGSGYPSDWRTVKWLDTNREC-----EMVRFKWA 317
>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
gi|189043606|sp|A2BL34.1|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
Length = 240
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D VG EK A+LS R ++ + AD YP+VS ASIVAKV RD +R
Sbjct: 109 VYVDAVGSPEKLAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------ 161
Query: 76 TAENMHRNFGSGYPGDPETKAWLT-DHKHIIFGFPSLVRFSWGT 118
++ GSGYP DPET AWL +++ P VR +W T
Sbjct: 162 MLRRLYGVRGSGYPTDPETIAWLAEEYRRNPANPPWFVRRTWST 205
>gi|296108883|ref|YP_003615832.1| ribonuclease HII [methanocaldococcus infernus ME]
gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
Length = 223
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 10/109 (9%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFP--SIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
++Y+D+ + EK++ KL + SIK +V KAD Y VVS ASI+AK RDR +
Sbjct: 98 EIYVDSCSPNREKFKRKLLSKLRGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREI-- 155
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + ++ +FGSGYP DP+TK +L + + FPS+VR W TC
Sbjct: 156 ----EELKKIYGDFGSGYPSDPKTKRFLLYYYNEYREFPSIVREHWETC 200
>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 326
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VAKV RD +
Sbjct: 147 MLTAAYVDTVGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P + VR SW T D
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPET 257
Query: 126 IVEVLWESD 134
+ +++E D
Sbjct: 258 CIPIVFEED 266
>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
Length = 326
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ Y+DTVG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VAKV RD +
Sbjct: 147 MLTAAYVDTVGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI--- 203
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP---SLVRFSWGTCTSHFKD--- 125
E + + GSGYP DP+ W+ H H F P + VR SW T D
Sbjct: 204 ------ERLGIDVGSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPET 257
Query: 126 IVEVLWESD 134
+ +++E D
Sbjct: 258 CIPIVFEED 266
>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
gi|189043624|sp|A4FWE5.1|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
Length = 239
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 178 ------EEYKKTFGEIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|336476394|ref|YP_004615535.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
gi|335929775|gb|AEH60316.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
Length = 217
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFP-------SIKFVVSKKADSLYPVVSGASIVAKVTRDR 66
+ Y+D+V ++E++ + L ++ I+ + +ADS+YP+VS ASI+AKV RD
Sbjct: 102 KAYVDSVDVNSERFGSTLKIKYSESNPGAKQIEIISKHRADSIYPIVSAASIIAKVRRDE 161
Query: 67 TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ E+ + M +FGSGYP DP+TK +L + FP VR SW TC + K
Sbjct: 162 -----LIEKIKKEMGIDFGSGYPSDPKTKKFLEEWICENDSFPEFVRHSWKTCDNLIK 214
>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
gi|397652571|ref|YP_006493152.1| ribonuclease HII [Pyrococcus furiosus COM1]
gi|24638181|sp|Q8U036.1|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
gi|393190162|gb|AFN04860.1| ribonuclease HII [Pyrococcus furiosus COM1]
Length = 224
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D DA ++ + + +R K + KAD+ YPVVS ASI+AKV RD +
Sbjct: 102 IYADAADVDANRFASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP+TK WL ++ FP +VR +W T
Sbjct: 157 -EKLKKQYGDFGSGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
gi|238686969|sp|A9A9T9.1|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
Length = 239
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + GSGYP DP+TK +L + H G P + R SW T + K+I E
Sbjct: 178 ------EEYKKTFGEIGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|340624684|ref|YP_004743137.1| ribonuclease HII [Methanococcus maripaludis X1]
gi|339904952|gb|AEK20394.1| ribonuclease HII [Methanococcus maripaludis X1]
Length = 242
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D +E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRDR
Sbjct: 123 ISIYIDACSSSEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-- 178
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ EE E GSGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 179 ---VIEEYKETFGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
gi|73917612|sp|Q6LXH7.1|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
Length = 242
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D +E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRDR
Sbjct: 123 ISIYIDACSSSEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-- 178
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ EE E GSGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 179 ---VIEEYKETFGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|410669623|ref|YP_006921994.1| ribonuclease HII [Methanolobus psychrophilus R15]
gi|409168751|gb|AFV22626.1| ribonuclease HII [Methanolobus psychrophilus R15]
Length = 214
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 26 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 85
+Y+ K S++ + + +AD +YP+VS ASIVAKV RD + EE + + +FG
Sbjct: 121 EYEKKHSEKAGCMSIISKHQADCIYPIVSAASIVAKVRRDS-----LIEELKKEIGVDFG 175
Query: 86 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
SGYP DP+TK +L D P +VR+SW T + K
Sbjct: 176 SGYPSDPKTKQFLQDWFKEHGELPDIVRYSWKTAENVMK 214
>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
Length = 213
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
E + + GSGYP DP T+A+L ++ FP +VR W T +D++
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKITQDMI 209
>gi|440795142|gb|ELR16278.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 241
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ ++Y+D +G+ A L + FPSI V+ KAD YP+VS ASIV K RD
Sbjct: 106 LAELYVDALGNC----ATLQRLFPSICTIVLESKADVNYPIVSVASIVTKTLRDGITENL 161
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS 110
F+E + RN+G+GYP P K WL + +FG PS
Sbjct: 162 PFKECDITIDRNYGNGYPSTPAVKDWLRNQD--LFGLPS 198
>gi|339242469|ref|XP_003377160.1| ribonuclease H2 subunit A [Trichinella spiralis]
gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
Length = 418
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 41/54 (75%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+V LDTVG EKY+AKL RFP I +VSKKADSL+ +VS ASI AKVTRD L
Sbjct: 291 KVILDTVGPTEKYEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344
>gi|337283739|ref|YP_004623213.1| ribonuclease HII [Pyrococcus yayanosii CH1]
gi|334899673|gb|AEH23941.1| ribonuclease HII [Pyrococcus yayanosii CH1]
Length = 221
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
VY+D+ +E++ L ++ K V KAD+ YPVVS ASI+AKV RDR +
Sbjct: 102 VYVDSADVRSERFGLALREKLAFDAKVVSEHKADAKYPVVSAASILAKVIRDREIEKLKL 161
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + +FGSGYP DP T+A+L D+ FP +VR +W T
Sbjct: 162 E------YGDFGSGYPSDPRTRAFLEDYYRRHGDFPPMVRRTWKTV 201
>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
Length = 264
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 14 FQVYLDTVGDAE-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
F Y+D E + +AKL + +I + KAD Y +VS ASI+AKV RD +
Sbjct: 131 FLTYIDACSSNETSFSNQLKAKLINK--NIDLIAEHKADDNYKIVSAASIIAKVNRDNII 188
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ E E + GSGYP DP+TK +L + P +VRFSW T K+
Sbjct: 189 DS--YNEKYEALGYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKLLKE 243
>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
gi|7227922|sp|O74035.1|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
Length = 228
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|388857401|emb|CCF49075.1| related to 35 kDa ribonuclease H [Ustilago hordei]
Length = 548
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ ++Y+DTVGD Y+ LS FP IK+ V+ KAD++YP+V ASI AKVTRDR +
Sbjct: 188 VTEIYVDTVGDPNSYKKLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIE 247
Query: 70 GWIFEETAENM 80
W + E +++
Sbjct: 248 AWKYAEQQQSL 258
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
GSGYPGDP T A+L +FG+P +VRFSW T + ++
Sbjct: 321 LGSGYPGDPNTVAFLKRTLDPVFGWPGIVRFSWATAKTMLEE 362
>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
Length = 221
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTT 201
>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
Length = 551
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 64/179 (35%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+ ++Y+DTVGD + Y LS FP IK+ V+ KAD++YP+V ASI AKVTRDR +
Sbjct: 196 LTEIYVDTVGDPKSYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVD 255
Query: 70 GWIFEET---------------------------------AENMHRNFGSGYPGDPETKA 96
W + E A N + + P P+ A
Sbjct: 256 AWRYAEQQQQRLPALPTDAAKPHQAKVLVDATNQPSCSPDASNESKKPNAESPSQPDL-A 314
Query: 97 WLTDHKHI---------------------------IFGFPSLVRFSWGTCTSHFKDIVE 128
+D H+ +FG+P LVRFSW T + ++ V+
Sbjct: 315 LSSDTDHVWSNLGALGSGYPADPNTVAFLKRTLDPVFGWPGLVRFSWATAKTMLEEKVK 373
>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
gi|7227917|sp|O59351.1|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
OT3]
Length = 220
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 41 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD 100
+ KAD+ Y +VS ASI+AKVTRDR + E + + FGSGYP DP TK WL +
Sbjct: 129 IAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGEFGSGYPSDPRTKEWLEE 182
Query: 101 HKHIIFGFPSLVRFSWGTC 119
+ FP +VR +W T
Sbjct: 183 YYKQYGDFPPIVRRTWETA 201
>gi|336258469|ref|XP_003344047.1| hypothetical protein SMAC_08904 [Sordaria macrospora k-hell]
gi|380087310|emb|CCC14315.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 397
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ +++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 168 VTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 223
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 79 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 131
N +GSGYP D + WL + H +FG+ RFSWGT KD V+V W
Sbjct: 300 NEAMAWGSGYPSDSKCVTWLKQNMHPVFGWGPECRFSWGTAKDMLETKDGVKVDW 354
>gi|413916143|gb|AFW56075.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 73
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 90 GDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 131
DP+TK WL DHKH +FGFP+LVRFSWGTC FKD V+V W
Sbjct: 11 ADPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVDVTW 52
>gi|336469012|gb|EGO57175.1| hypothetical protein NEUTE1DRAFT_123501 [Neurospora tetrasperma
FGSC 2508]
gi|350288681|gb|EGZ69906.1| hypothetical protein NEUTE2DRAFT_112272 [Neurospora tetrasperma
FGSC 2509]
Length = 381
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ +++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 160 VTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 129
+GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 290 WGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLET 331
>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
gi|11387114|sp|Q9V1A9.1|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
gi|380741273|tpe|CCE69907.1| TPA: ribonuclease HII [Pyrococcus abyssi GE5]
Length = 224
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y+D+ AE++ + R K V KAD+ Y +VS ASI+AKV RDR +
Sbjct: 102 IYIDSADVKAERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP TK WL + FP +VR +W T
Sbjct: 157 -EKLKAEYGDFGSGYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTA 201
>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
Length = 381
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ +++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 160 VTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 129
+GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 290 WGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLET 331
>gi|333910258|ref|YP_004483991.1| ribonuclease HII [Methanotorris igneus Kol 5]
gi|333750847|gb|AEF95926.1| ribonuclease HII [Methanotorris igneus Kol 5]
Length = 232
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 14 FQVYLDTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
F++Y+D A + +AK+ + P K + KAD YP+VS ASI+AKVTRD +
Sbjct: 108 FEIYVDACSSNAKAFANQLRAKMIDKSP--KIIAEHKADEKYPIVSAASIIAKVTRDEII 165
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ E + GSGYP DP+T +L + P + R SW T
Sbjct: 166 ESYKKE------YGEIGSGYPSDPKTINFLKKYVEEFGELPKIARKSWKTA 210
>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
Length = 219
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 15 QVYLDTVGDAEKYQAKL--SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
++Y+D+ EK A L ++ + + + KAD+ Y VV+ ASI+AKV RDR +
Sbjct: 101 RIYVDSADVDEKRFASLIRAKLNYNAEVIAEHKADAKYEVVAAASILAKVIRDREI---- 156
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP T+ WL ++ FP +VR SW T
Sbjct: 157 --EKLKERYGDFGSGYPSDPRTRRWLEEYYKEYGEFPPIVRRSWDTV 201
>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
gi|34395791|sp|Q8TPF4.1|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
Length = 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 21/119 (17%)
Query: 16 VYLDTVG-DAEKYQAKLSQRF----PS----IKFVVSKKADSLYPVVSGASIVAKVTRDR 66
VY D AE++ L +++ P+ I+ + +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE 161
Query: 67 TLRGWIFEETAENMHRNFGSGYPGDPETKA----WLTDHKHIIFGFPSLVRFSWGTCTS 121
+ EE + +FGSGYP DP+TKA W +H FP +VR SW T +
Sbjct: 162 -----LIEEIKKEWSVDFGSGYPSDPKTKAFLLKWGKEHDG---KFPEIVRQSWQTVEN 212
>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
Length = 230
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 14 FQVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 64
++YLD EK + + +R IK + KADS YPVVS ASI+AK R
Sbjct: 107 VEIYLDACSTNTKKFESDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAER 166
Query: 65 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTC 119
D + + + ++ + GSGYP D +T +L D+ KH P + R W TC
Sbjct: 167 DEIIENY------KKIYGDIGSGYPSDSKTIKFLEDYFKKH--KKLPEITRTKWKTC 215
>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
gi|2495822|sp|Q57599.1|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + + + ++ +
Sbjct: 127 DKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY------KKIYGDI 180
Query: 85 GSGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTC 119
GSGYP DP+T +L D+ KH P + R W TC
Sbjct: 181 GSGYPSDPKTIKFLEDYFKKH--KKLPDIARTHWKTC 215
>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
gi|121688011|sp|Q0W5R8.1|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Length = 224
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 17 YLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
YLD +AE++ + + ++ V + +ADS YP+VS ASI+AKV RD +R
Sbjct: 109 YLDACDVNAERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR----- 163
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E +E M + GSGYP DP T ++L ++ P R SW T + D ++
Sbjct: 164 EISEKMGEDVGSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>gi|374635723|ref|ZP_09707316.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
gi|373561339|gb|EHP87576.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
Length = 234
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 19/113 (16%)
Query: 14 FQVYLDTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
F++Y+D A + +AK+ + P K + KAD YP+VS ASI+AKVTRD +
Sbjct: 112 FEIYVDACSSNAKAFANQLKAKMIDKTP--KIIAEHKADEKYPIVSSASIIAKVTRDEII 169
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII--FG-FPSLVRFSWGT 118
+ E + GSGYP DP+T +L KH + FG P + R SW T
Sbjct: 170 EHYKKE------YGEIGSGYPSDPKTINFL---KHYVGEFGELPKIARKSWKT 213
>gi|302348278|ref|YP_003815916.1| ribonuclease HII [Acidilobus saccharovorans 345-15]
gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
Length = 223
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 12 FIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+ +Y+D G+ +L + + VV KAD+ Y VVS ASI+AKV RDR +
Sbjct: 101 LVKAIYIDKFGELRILPGELKRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRI--- 157
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTC 119
E +M+ GSGYP DP T +W+ K + G P ++R+SWGT
Sbjct: 158 ---EVLRSMYGVEGSGYPSDPLTVSWV--MKVLSSGARPPIIRYSWGTL 201
>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + + + ++ +
Sbjct: 127 DKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY------KKIYGDI 180
Query: 85 GSGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTC 119
GSGYP DP+T +L D+ KH P + R W TC
Sbjct: 181 GSGYPSDPKTIKFLEDYFKKH--KKLPDIARTHWKTC 215
>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
gi|150421651|sp|Q9YET5.2|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
Length = 225
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 16 VYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
V +D GD + + L++ +V +KADS YPVVS ASIVAKV RD L
Sbjct: 104 VVVDKYGDVQGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------ 157
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG---FPSLVRFSWGTC 119
+ M+ GSGYP DPET+ W+ + +F P ++R++W T
Sbjct: 158 QVLRRMYGVRGSGYPSDPETREWVRE----VFARGEAPRVIRYTWSTV 201
>gi|345005256|ref|YP_004808109.1| ribonuclease HII [halophilic archaeon DL31]
gi|344320882|gb|AEN05736.1| ribonuclease HII [halophilic archaeon DL31]
Length = 217
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
+F DT DAE++ +L +++ AD YPVVS AS+VAKV RDR
Sbjct: 98 LFADAADT--DAERFGRRLRDTILDGDGSALEVTAEHGADESYPVVSAASVVAKVERDR- 154
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ E E R GSGYP DP T+++L + P+ R SW TC
Sbjct: 155 ----LMAEIDEEHGRAIGSGYPSDPTTRSFLEGYVAEYGELPACARASWATC 202
>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
E + + GSGYP DP T+A+L ++ FP +VR G
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGAGAII 202
>gi|336122129|ref|YP_004576904.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
gi|334856650|gb|AEH07126.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
Length = 305
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 16 VYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+Y+D EK ++KL +IK + KAD Y +VS ASIVAKV RD+ +
Sbjct: 178 IYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADDKYKIVSAASIVAKVIRDKIIDN 237
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 130
+ + ++ GSGYP D T +L ++ P + R SW T + K+
Sbjct: 238 Y------KEIYGEIGSGYPSDKTTINYLKNYVKEHGTLPEIARKSWKTSKNILKEF---- 287
Query: 131 WESDEMDEDVSSRRSGKRQLKL 152
DEM++ + R+ +Q+KL
Sbjct: 288 --EDEMNK---TNRNNSQQMKL 304
>gi|378755758|gb|EHY65784.1| hypothetical protein NERG_01391 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFV----VSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+V++DTVG+ + +AK+ K + V +KADS Y VV ASI+AKVTRD
Sbjct: 210 EVFVDTVGNKQTLRAKVVDLLKDSKGIKNVTVEEKADSKYQVVGAASILAKVTRDMFFEN 269
Query: 71 WIFEET---AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
+ + ++ + SGYP D TK W+ GFPS+ R +W K I+
Sbjct: 270 FDLSKMIYKGSSLPKIAVSGYPSDVNTKNWMKKSFLSGLGFPSIFRIAW-------KPIL 322
Query: 128 EVLWE 132
EVL E
Sbjct: 323 EVLQE 327
>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
Length = 212
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
I V KAD LY VVS ASIVAKVTRDR + E ++ N GSGYP DP+T A+
Sbjct: 122 IAIVSKHKADDLYAVVSAASIVAKVTRDRMI------EDLKSQWGNIGSGYPSDPDTIAF 175
Query: 98 LTDHKHIIFGFPSLVRFSWGTCTSHF 123
L + PS+ R SW T ++
Sbjct: 176 LKRYIEERGEPPSIARMSWKTISNMM 201
>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
Length = 233
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 8 NLHFFIFQVYLDTVG-DAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASI 58
NL ++Y+D +A+K++ +L R I K + KAD YP+VS ASI
Sbjct: 103 NLKDEYLEIYVDACSTNAKKFENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASI 162
Query: 59 VAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+AK RD + E + + GSGYP DP+T +L + P++ R W T
Sbjct: 163 IAKADRDEII------EQYKKKYGEIGSGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKT 216
Query: 119 C 119
C
Sbjct: 217 C 217
>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
gi|189043627|sp|A6UQ18.1|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
Length = 244
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 15 QVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
++++D +E+ ++AKL + ++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 126 KIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNIIE 183
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ E + GSGYPGDP+TK +L +HK + P + R SW T K+
Sbjct: 184 SYKEE------FGDIGSGYPGDPKTKEFLKRFVKEHKKL----PKIARGSWATSKKLLKE 233
Query: 126 IVE 128
E
Sbjct: 234 FEE 236
>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
Length = 198
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 22/116 (18%)
Query: 13 IFQVYLDTVGD-AEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+ +Y+D+ E+++ + +R ++ + KAD L PVVS ASIVAKV RD +
Sbjct: 84 VHTIYIDSPDPKPERFRDMIMERVGGNVNVIAMNKADKLIPVVSAASIVAKVVRDSII-- 141
Query: 71 WIFEETAENMHR---NFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTC 119
E +HR +FGSGYP DP T K W+ H P +VR SW T
Sbjct: 142 -------ERLHREFGDFGSGYPSDPRTIAFLKRWIEKHG----DLPPIVRRSWSTA 186
>gi|435851233|ref|YP_007312819.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433661863|gb|AGB49289.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 216
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 26 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 85
+Y K ++ + V +AD+ YP+VS ASIVAKV RD + +E + + G
Sbjct: 121 QYAKKYPEKSEELTVVSEHQADATYPIVSAASIVAKVRRDE-----LVKELINRIGIDLG 175
Query: 86 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
SGYP DP+TK +L D P VR SW T + K+
Sbjct: 176 SGYPSDPKTKRFLEDWSREHGTLPDFVRHSWKTALNVLKE 215
>gi|389852952|ref|YP_006355186.1| ribonuclease HII [Pyrococcus sp. ST04]
gi|388250258|gb|AFK23111.1| Ribonuclease HII [Pyrococcus sp. ST04]
Length = 222
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D AE++ ++ R + + KAD+ Y VVS ASI+AKV RD +
Sbjct: 102 IYADAADVKAERFAREIGARLSYNASIIAEHKADAKYEVVSAASILAKVIRDEEI----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP TK WL + KH FP +VR SW T
Sbjct: 157 -EKLKEEYGDFGSGYPSDPRTKKWLEEWFKKH--KSFPPIVRRSWETV 201
>gi|432328903|ref|YP_007247047.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
gi|432135612|gb|AGB04881.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
Length = 213
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
VY+D D E++ +++ + ++SK KAD LYP VS ASI+AKV RDR I
Sbjct: 98 VYVDAADVDEERFAREIALKVRKDVNIISKHKADLLYPEVSAASIIAKVERDR-----II 152
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
EE + M +FGSGYP D TK +L ++ + P VR SW +
Sbjct: 153 EELKKKMG-DFGSGYPADRRTKEYLEEYFNEHGDLPPNVRRSWKSA 197
>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
Length = 218
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPE 93
+++ V AD L PVVS ASIVAKV RD + E +HR +FGSGYP DP
Sbjct: 129 NVEVVAMNNADKLIPVVSAASIVAKVIRDSII---------EELHREYGDFGSGYPSDPR 179
Query: 94 TKAWLTDHKHIIFGFPSLVRFSWGTC 119
T A+L D P +VR SW T
Sbjct: 180 TMAFLRDWVKRHGDLPPIVRRSWSTV 205
>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
gi|34395785|sp|Q8PTA3.1|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 220
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
IK V +AD++YPVVS ASI+AKV RD + EE +FGSGYP DP+T+ +
Sbjct: 133 IKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKREWCIDFGSGYPSDPKTRGF 187
Query: 98 LTD-HKHIIFGFPSLVRFSWGT 118
L K FP +VR SW T
Sbjct: 188 LLKWGKEHGGDFPDIVRQSWQT 209
>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
gi|97182902|sp|Q468N6.1|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
Length = 224
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
I+ + +AD+ YPVVS ASI+AKV RD + EE + +FGSGYP DP+TK +
Sbjct: 133 IEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKKEWGLDFGSGYPSDPKTKEF 187
Query: 98 LTD-HKHIIFGFPSLVRFSWGTC 119
L + K FP +VR SW T
Sbjct: 188 LLNWGKEHSGEFPEIVRQSWQTV 210
>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
gi|189043622|sp|A6UUM1.1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
Length = 277
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 14 FQVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++Y+D EK + ++ + +IK + KAD Y +VS ASI+AKV RDR
Sbjct: 136 IEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRK 195
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 126
+ + + ++ GSGYP D T+ +L ++ P + R SW T K I
Sbjct: 196 IEEY------KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKLLKKI 248
>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
Length = 244
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 10 HFFIFQVYLDTVGDAEKY-QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRT 67
H+ +Y+D + + Y LS+ +I+ +V+ AD YPVVS ASI+AK RD+
Sbjct: 105 HYRTVSIYIDEIKGYKNYILTNLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKN 164
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ + + ++ NFGSGYP D T WLT + P ++R +W T
Sbjct: 165 I------DFLKKIYGNFGSGYPSDKITIKWLTKTYNEENEPPLIIRRTWSTL 210
>gi|387593201|gb|EIJ88225.1| hypothetical protein NEQG_01669 [Nematocida parisii ERTm3]
gi|387596086|gb|EIJ93708.1| hypothetical protein NEPG_01280 [Nematocida parisii ERTm1]
Length = 354
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 21/118 (17%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFV----VSKKADSLYPVVSGASIVAKVTRDRTL 68
I ++++DTVG+ + K+ R K + V +KADS Y V ASI+AKVTRD
Sbjct: 211 ISEIFIDTVGNKKTLHEKVKNRMKEYKTIKKITVEEKADSKYQTVGAASILAKVTRD--- 267
Query: 69 RGWIFEETAENMHRNFG---------SGYPGDPETKAWLTDHKHII-FGFPSLVRFSW 116
+F E E ++ + SGYP D TK W+ +H I GFPS+ R +W
Sbjct: 268 ---MFLEMPEVVNIMYSEAKLPSMPISGYPSDAATKNWM-EHSFISGIGFPSIFRITW 321
>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
Length = 230
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 14 FQVYLDTVG-DAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAKVTR 64
++YLD +A+K++ ++ +I K + KAD+ Y VVS ASI+AK R
Sbjct: 107 IEIYLDACSTNAKKFENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAER 166
Query: 65 DRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTC 119
D + + + ++ + GSGYP DP+T +L ++ KH P + R W TC
Sbjct: 167 DEIIDNY------KKIYGDIGSGYPSDPKTIKFLENYFKKH--KKLPDIARTHWKTC 215
>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
gi|121691891|sp|Q12YN9.1|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
Length = 213
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 41 VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 99
V+SK AD L+PVVS ASI+AKV RD + E+ +M + GSGYP DP+TK +L
Sbjct: 134 VISKHGADDLFPVVSAASILAKVRRDE-----LIEKIKVDMGVDIGSGYPSDPKTKKFLE 188
Query: 100 DHKHIIFGFPSLVRFSWGTC 119
+ FP +VR SW T
Sbjct: 189 NWYRENSSFPDIVRHSWKTA 208
>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
Length = 218
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
+IK + +AD +Y VVS ASI+AKV RD + E +FGSGYP DP+TK
Sbjct: 132 NIKIISEHEADVVYSVVSAASIIAKVRRDELVNNL-----KEEFGVDFGSGYPSDPKTKQ 186
Query: 97 WLTDHKHIIFGFPSLVRFSWGTC 119
+L D P +VR SW T
Sbjct: 187 FLLDWVKRYGSLPDIVRHSWKTA 209
>gi|410720630|ref|ZP_11359984.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
gi|410600757|gb|EKQ55282.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
Length = 204
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
E+ ++L ++ V KAD YP+VS ASI+AKV RDR + + + N
Sbjct: 112 ERLTSELETMHSQLRVVAEHKADDRYPIVSAASIIAKVERDRAI------QDIRKTYENV 165
Query: 85 GSGYPGDPETKAWLTDHKHIIFG--FPSLVRFSWGT 118
GSGYP DP+T +L K + G P VR SW T
Sbjct: 166 GSGYPSDPKTIEFL---KTMPPGEELPDFVRSSWAT 198
>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
gi|259494074|sp|C6A1I4.1|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
Length = 224
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
K + KADS Y V+ ASI+AKVTRD+ + E + ++ N GSGYP DP T+ +L
Sbjct: 127 KIIAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIYGNIGSGYPSDPITRKFL 180
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
++ FP +VR SW T
Sbjct: 181 EEYYKEHGSFPPVVRRSWKTL 201
>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
Length = 200
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+V +D++ K K Q+ +I+ +V KAD YPVVS ASIVAKV RD + E
Sbjct: 99 KVIVDSIDIKPKRLKKKLQK-ENIEVIVEHKADEKYPVVSAASIVAKVERDSEI-----E 152
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ + + + GSGYP DP+T +L K P VR +W T
Sbjct: 153 KLKKRYNCDLGSGYPNDPKTIKFLKKFKR--SELPDFVRKTWNT 194
>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
gi|115305550|sp|Q2FP80.1|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
Length = 212
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 25 EKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83
E+Y+ +S P V KADSL+P VS ASI+AKV RDR I EE ++ + +
Sbjct: 108 ERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-YGD 161
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
GSGYP DP T +LT + P + R SW T
Sbjct: 162 IGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWET 196
>gi|347524319|ref|YP_004781889.1| ribonuclease HII [Pyrolobus fumarii 1A]
gi|343461201|gb|AEM39637.1| ribonuclease HII [Pyrolobus fumarii 1A]
Length = 234
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
+VY+D VGD + A + + + + KAD+ Y +V ASI+AKV RD +
Sbjct: 107 KVYVDAVGDPRQIIAAIRRAGFMGEVIAEPKADARYTIVGAASIIAKVYRDAVI------ 160
Query: 75 ETAENMHRNF---GSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGT 118
E + R + GSGYP DPET AW+ + ++ P VR SWGT
Sbjct: 161 ---EELRREYGVRGSGYPTDPETLAWIREAYEENPEEPPWFVRRSWGT 205
>gi|375082469|ref|ZP_09729526.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
gi|374742808|gb|EHR79189.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
Length = 224
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S K + KADS Y V+ ASI+AKVTRDR + E + ++ GSGYP DP T+
Sbjct: 125 SPKIIAEHKADSKYIPVAAASILAKVTRDRAI------EKLKELYGEIGSGYPSDPITRR 178
Query: 97 WLTDHKHIIFGFPSLVRFSWGTC 119
+L ++ FP +VR SW T
Sbjct: 179 FLEEYYKAHGEFPPIVRKSWKTL 201
>gi|433637107|ref|YP_007282867.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
gi|433288911|gb|AGB14734.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
Length = 232
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 23 DAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA+++ +++ P I AD+ P+V ASIVAKV RD + I A+ +
Sbjct: 118 DADRFARRVTDACSPPIDVAAKHGADADDPLVGAASIVAKVERDARM-ADIAATYADAGY 176
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ GSGYP DP+T+A+L H P R SW TC D
Sbjct: 177 GDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 220
>gi|448426157|ref|ZP_21583103.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|448508077|ref|ZP_21615311.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|448518457|ref|ZP_21617534.1| ribonuclease HII [Halorubrum distributum JCM 10118]
gi|445679648|gb|ELZ32108.1| ribonuclease HII [Halorubrum terrestre JCM 10247]
gi|445697654|gb|ELZ49714.1| ribonuclease HII [Halorubrum distributum JCM 9100]
gi|445705038|gb|ELZ56942.1| ribonuclease HII [Halorubrum distributum JCM 10118]
Length = 243
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 61
+R + L F+ + GD E ++ R P++ + AD PVV AS+VAK
Sbjct: 114 EERFAERLARFVAEGGEAAAGDDENGASEEGHRLPTVDVTAAHGADEDDPVVGAASVVAK 173
Query: 62 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
RD + + A + + GSGYP DP T+++L + P R SW TC
Sbjct: 174 TVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
Length = 210
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 10 HFFIFQVYLDTVG-DAEKYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 65
HF + ++D E++ A L +R ++ + KAD YPVVS ASIVAKV RD
Sbjct: 93 HFQPARAFVDAADVKPERFAANLRSNYKRVGELEIISEWKADDHYPVVSAASIVAKVHRD 152
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG-----FPSLVRFSWGTC 119
R++R E AE GSGYP DP+T +L K ++ G P+ VR SW T
Sbjct: 153 RSIRVLEAEIGAE-----IGSGYPADPKTIQFL---KGLLKGKELDNIPAYVRRSWKTV 203
>gi|374629635|ref|ZP_09702020.1| RNase HII [Methanoplanus limicola DSM 2279]
gi|373907748|gb|EHQ35852.1| RNase HII [Methanoplanus limicola DSM 2279]
Length = 212
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 17 YLDTVGDAE-KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
Y+D E +Y K++ + V SK KAD++YPVV+ ASIVAKVTRDR ++
Sbjct: 99 YVDACDVNEARYGNKIADLLDNKVTVYSKHKADNIYPVVAAASIVAKVTRDRLIK----- 153
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
E +E ++ GSGYP DP T ++L + P + R SW T ++
Sbjct: 154 ELSE-VYGTIGSGYPSDPVTISYLEGYIRENKEAPDIARKSWKTVSN 199
>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
Length = 215
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 16 VYLDTVG-DAEKYQAKLSQRF---------PSIKFVVSKKADSLYPVVSGASIVAKVTRD 65
Y+D +AE++ KL F P I + AD +YP+VS ASI+AKV RD
Sbjct: 102 AYVDAADVNAERFGKKLLAAFEKKHEREKKPEI--ISEHGADDIYPIVSAASIIAKVRRD 159
Query: 66 RTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
L G I +TA ++ +FGSGYP DP+TK +L + P VR SW T
Sbjct: 160 E-LIGNI--KTA--INEDFGSGYPSDPKTKKFLQEWMDKNGNLPDFVRHSWKTAA 209
>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
Length = 219
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 17 YLDTVG-DAEKYQ---AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
Y+D +A++Y+ L + S + + +ADS YP+V+ ASI+AKVTRDR L +
Sbjct: 103 YVDACDVNADRYRETVTALLEPAASCQVIAEHRADSTYPIVAAASIIAKVTRDR-LVDAL 161
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+E + GSGYP D T A+L+D+ P+ R SW T T H
Sbjct: 162 ADECGQ-----IGSGYPSDRYTIAYLSDYIRRHHAPPACARKSWKT-TIHL 206
>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 15 QVYLDTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+VY+D AE+ + KL + ++ + KADS YP+VS ASI+AKV RDR
Sbjct: 97 KVYVDAADVNEDRFAEEIKKKLGK---DVEIISEHKADSKYPMVSAASIIAKVERDR--- 150
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
I EE E + FGSGYP D TK +L + P R SW + K
Sbjct: 151 --IIEELKEELG-EFGSGYPSDDRTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
Length = 211
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 18/109 (16%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
VY+D + E+++ ++ +R ++ S KAD +YP+VS ASIVAKV RD FE
Sbjct: 100 VYIDCPDINVERFKHEIEER-TGVEVFASHKADEIYPIVSIASIVAKVERD-------FE 151
Query: 75 -ETAENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 118
+ + ++ +FGSGYP D T +++L +HK FP +VR W T
Sbjct: 152 IDKLKKIYGDFGSGYPSDLRTIEFLRSYLREHK----SFPPIVRKRWKT 196
>gi|429216288|ref|YP_007174278.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
gi|429132817|gb|AFZ69829.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
Length = 228
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 11 FFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
F I + +D G + +KL Q +V KAD YPVVS ASI+AKV RDR +
Sbjct: 105 FEIKSIIIDKFGYLKLMPSKLKQLGFKGDLIVEPKADVNYPVVSAASIIAKVIRDRRI-- 162
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGF-PSLVRFSWGTC 119
E ++ GSGYP DPET ++ + G+ P +R+SW T
Sbjct: 163 ----EILRKLYGVKGSGYPSDPETIDYV--FSELKKGYKPLFIRYSWETL 206
>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
Length = 227
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S K + KAD+ Y VS ASI+AKVTRD+ + E + + GSGYP DP T+
Sbjct: 128 SPKIIAEHKADAKYLPVSAASILAKVTRDKAI------EKLKKQYGEIGSGYPSDPRTRK 181
Query: 97 WLTDHKHIIFGFPSLVRFSWGTC 119
+L ++ FP +VR SW T
Sbjct: 182 FLEEYYKEHGEFPPIVRKSWKTL 204
>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
Length = 248
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
K V +ADS YP+VS ASI+AKV+RD ++ + ++H +FGSGYP DP WL
Sbjct: 135 KLVFESQADSKYPIVSLASIIAKVSRDLSI------SSNTSVHGDFGSGYPSDPRAVLWL 188
Query: 99 TDHKHIIFGFPSLVRFSW 116
+ + P +VR SW
Sbjct: 189 ERVYNSLEHPPPIVRKSW 206
>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
Length = 217
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S+K + KADS Y V+ ASI+AKV RDR +R E +E GSGYPGDP+T+
Sbjct: 123 SVKIIAENKADSKYIQVASASIIAKVERDRRIR-----ELSELTGVEIGSGYPGDPKTRE 177
Query: 97 WLTDHKHIIFG--FP-SLVRFSWGTCTSHFKDI 126
+ + I+ G FP VR+ W T ++I
Sbjct: 178 AI---RMILKGAEFPRDQVRWKWATINRLLEEI 207
>gi|374857159|dbj|BAL60012.1| ribonuclease HII [uncultured candidate division OP1 bacterium]
Length = 207
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S V +AD+ YP+VS ASI+AKV+RDR + E + +FG GYP +P+T+A
Sbjct: 123 SFALVAENRADATYPIVSAASIIAKVSRDRAI------ERLREEYGDFGWGYPSEPKTRA 176
Query: 97 WLTDHKHIIFGFPSLVRFSWGT 118
+L FP R W T
Sbjct: 177 FLKKFYECNGRFPDCARAKWRT 198
>gi|341581295|ref|YP_004761787.1| ribonuclease HII [Thermococcus sp. 4557]
gi|340808953|gb|AEK72110.1| ribonuclease HII [Thermococcus sp. 4557]
Length = 231
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
+ + KAD + VS ASI+AKVTRDR + E + + GSGYP DP T+A+L
Sbjct: 127 EIIAEHKADDKFVPVSAASIIAKVTRDRAI------EKLKEKYGEIGSGYPSDPRTRAFL 180
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
++ FP +VR SW T
Sbjct: 181 ENYYREHGEFPPIVRRSWKTL 201
>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
gi|115305551|sp|Q2NEI6.1|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
Length = 212
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 YLDTVGDAE-KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
Y+D + E ++ K+ + P++ V KAD Y +VS ASI+AKV RD+ L E
Sbjct: 109 YIDCIDVRENRFHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------E 162
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ + GSGYP D T +L K+ FP ++R +W T
Sbjct: 163 IIRQEYGSVGSGYPSDKNTINYLKTIKN--NQFPPIIRKTWKT 203
>gi|408381629|ref|ZP_11179177.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
gi|407815560|gb|EKF86130.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
E+ ++L + V KAD YP+VS ASIVAKV RDR + + + +
Sbjct: 112 ERLASELESMHSQLNVVSEHKADDHYPIVSAASIVAKVERDRAI------QNIRKTYPDV 165
Query: 85 GSGYPGDPETKAWL-TDHKHIIFGFPSLVRFSWGTCTSHFK 124
GSGYP DP+T +L T + P +R SW T K
Sbjct: 166 GSGYPSDPKTIEFLKTLSQETPNELPEFIRRSWATVERILK 206
>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Methanoregula boonei 6A8]
gi|166226624|sp|A7I9P7.1|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
Length = 213
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KH 103
ADS YPVVS ASIVAKVTRDR + + GSGYP DPET A+L + +H
Sbjct: 130 ADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSGYPSDPETIAYLNAYIDEH 183
Query: 104 IIFGFPSLVRFSWGTCTS 121
I P + R SW T ++
Sbjct: 184 RI--PPPIARKSWKTVST 199
>gi|448452543|ref|ZP_21593405.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
gi|445808742|gb|EMA58800.1| ribonuclease HII [Halorubrum litoreum JCM 13561]
Length = 243
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 61
+R + L F+ + GD E ++ P++ + AD PVV AS+VAK
Sbjct: 114 EERFAERLARFVAEGGEAAAGDDENGASEEGDHLPTVDVTAAHGADEDDPVVGAASVVAK 173
Query: 62 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
RD + + A + + GSGYP DP T+++L + P R SW TC
Sbjct: 174 TVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|448376204|ref|ZP_21559488.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
gi|445658222|gb|ELZ11045.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
Length = 235
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 23 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA+++ +++ I AD+ P+V ASIVAKV RD + + E A+ +
Sbjct: 121 DADRFARRVTDACSHPIDVAAEHGADADDPLVGAASIVAKVERDARM-ADVAETYADAGY 179
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ GSGYP DP+T+A+L H P R SW TC D
Sbjct: 180 GDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 223
>gi|448484903|ref|ZP_21606304.1| ribonuclease HII [Halorubrum arcis JCM 13916]
gi|445819336|gb|EMA69180.1| ribonuclease HII [Halorubrum arcis JCM 13916]
Length = 243
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 61
+R + L F+ + GD E ++ P++ + AD PVV AS+VAK
Sbjct: 114 EERFAERLARFVAEGGEAAAGDDENGASEEGHHLPTVDVTAAHGADEDDPVVGAASVVAK 173
Query: 62 VTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
RD + + A + + GSGYP DP T+++L + P R SW TC
Sbjct: 174 TVRDAAMAEI---DAAYPGYDDLGSGYPSDPATRSFLAAYVGDHGTLPDCARASWSTC 228
>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP6]
gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP6]
Length = 210
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 23 DAEKY-QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
+AE++ QA + S+ + KAD + VVS ASI+AKV RDR++R E MH
Sbjct: 110 NAERFAQAVRNHSKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMR-----ELENEMH 164
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP D +T A+L++ P R SW T
Sbjct: 165 CKIGSGYPHDRDTIAFLSEWVRENKDLPPCARHSWTTA 202
>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
Length = 255
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Query: 14 FQVYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
++Y+D V + + + R ++ V+ +AD+ YP VS AS++AKV RDR +
Sbjct: 112 LRIYVDEVKGYGESVRECAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNI--- 168
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG----FPSLVRFSWGTC 119
+ + GSGYP DP ++AWL I+G P +R SWG
Sbjct: 169 ---DVLGKITGGLGSGYPSDPASRAWLAT----IYGRWDKPPVFIRRSWGIV 213
>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
Length = 244
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 10 HFFIFQVYLDTVGDAEKY-QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRT 67
H+ +Y+D + + Y A LS+ +I+ +V+ AD YPVVS ASI+AK RD+
Sbjct: 105 HYRTASIYIDEIKGYKNYILANLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKN 164
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
+ + + ++ N GSGYP D T WL + P ++R +W T +
Sbjct: 165 I------DFLKKIYGNLGSGYPSDRVTINWLIKTYNGEKEPPLIIRRTWSTLRKY 213
>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 218
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ K + + V KADS+YP VS ASIV+KV RDR + ++
Sbjct: 106 VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DK 160
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
AE + FGSGYP DP T +L S+ R W T
Sbjct: 161 IAEK-YGFFGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWET 202
>gi|34395818|sp|Q97CG6.2|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 212
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ K + + V KADS+YP VS ASIV+KV RDR + ++
Sbjct: 100 VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DK 154
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
AE + FGSGYP DP T +L S+ R W T
Sbjct: 155 IAEK-YGFFGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 219
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ K + + V KADS+YP VS ASIV+KV RDR + ++
Sbjct: 107 VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DK 161
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
AE + FGSGYP DP T +L S+ R W T
Sbjct: 162 IAEK-YGFFGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWET 203
>gi|390962065|ref|YP_006425899.1| ribonuclease HII [Thermococcus sp. CL1]
gi|390520373|gb|AFL96105.1| ribonuclease HII [Thermococcus sp. CL1]
Length = 232
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
+ + KAD + VS ASI+AKVTRDR + E + + GSGYP DP T+A+L
Sbjct: 129 EIIAEHKADDKFVPVSAASILAKVTRDRAI------EKLKEEYGEIGSGYPSDPRTRAFL 182
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
++ FP +VR SW T
Sbjct: 183 ENYYREHGTFPPIVRRSWKTL 203
>gi|448500118|ref|ZP_21611597.1| ribonuclease HII [Halorubrum coriense DSM 10284]
gi|445696840|gb|ELZ48919.1| ribonuclease HII [Halorubrum coriense DSM 10284]
Length = 235
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
++ + + P++ + AD PVV AS+VAKV RD + A +
Sbjct: 130 DEAEPRADGALPAVDVTAAHGADEDDPVVGAASVVAKVVRDAAMTDL----DAARPEYDL 185
Query: 85 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+A+L + P R SW TC
Sbjct: 186 GSGYPSDPTTRAFLAAYVGDHGTLPDCARASWSTC 220
>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
Length = 232
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFP----SIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
I ++Y+D + K ++ SI + AD+ Y VV ASIVAKV RD +
Sbjct: 102 ISEIYIDAFANPNKLLHYINSNCIASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHI 161
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
+ + ++ +FGSGYP D +T WL ++ P +VR SW T T
Sbjct: 162 ------DNLKKVYGDFGSGYPSDKKTIEWLRNYYAKHNALPPIVRKSWSTIT 207
>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
Length = 205
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D+ E L + V KAD +YP VS ASI+AKV RDR +
Sbjct: 98 VYVDSFDVNELRLQSLLMENTKRQIVCRHKADEIYPCVSAASIIAKVIRDREI------- 150
Query: 76 TAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123
+ +H+ +FGSGYP DP T ++ + S+VR W T S
Sbjct: 151 --DKLHKDYGDFGSGYPSDPRTINFVKNALKNGINIDSIVRHQWKTYKSML 199
>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 15 QVYLDTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
+VY+D AE+ + KL + ++ + KADS YP+VS ASI+AKV RDR +
Sbjct: 97 KVYVDAADVNEDRFAEEIKKKLGK---DVEIISEHKADSKYPMVSAASIIAKVERDRII- 152
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124
+ +E E FGSGYP D TK +L + P R SW + K
Sbjct: 153 NELKKELGE-----FGSGYPADERTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
Length = 204
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 17 YLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
Y+D + E++ ++ ++K V AD YP+VS ASIVAKV RD+ + + +E
Sbjct: 103 YIDCIDVKPERFTNEIENFQENLKVVAEHGADDTYPIVSAASIVAKVERDQEI-SRLKKE 161
Query: 76 TAENMHRNFGSGYPGDPETKAWL--TDHKHIIFGFPSLVRFSWGT 118
E GSGYP DP+T A+L T +K P VR SW T
Sbjct: 162 FGE-----IGSGYPSDPKTVAYLKATPYKE----LPIFVRRSWST 197
>gi|383318933|ref|YP_005379774.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
gi|379320303|gb|AFC99255.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
Length = 217
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 17 YLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
YLD +AE++ + +R ++ V AD YP+VS ASI+AKV RD + +
Sbjct: 102 YLDACDVNAERFGLNVRKRLSFEVEVVSRHNADKDYPIVSAASILAKVHRD-----ALVK 156
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ +E + + GSGYP DP T +L + P VR SW T ++ D ++
Sbjct: 157 KISETVGEDVGSGYPHDPITIKFLKSYYAKNGEMPPFVRKSWKTTSAVISDCLQ 210
>gi|409096060|ref|ZP_11216084.1| ribonuclease HII [Thermococcus zilligii AN1]
Length = 224
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
+ + KAD +P VS ASI+AKVTRDR + E + GSGYP DP T+ +L
Sbjct: 129 EIIAEHKADDKFPPVSAASILAKVTRDRAI------ERLREEYGEIGSGYPSDPRTREFL 182
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
+ FP +VR +W T
Sbjct: 183 MGYYKKHGEFPPVVRRTWETL 203
>gi|448458612|ref|ZP_21596278.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
gi|445809124|gb|EMA59171.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
Length = 234
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 28 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 87
A P++ + AD PVV AS+VAKV RD + E A + GSG
Sbjct: 131 SATTDTDLPAVDVSAAHGADEDDPVVGAASVVAKVARDERMAAVDAEYAA---YDGVGSG 187
Query: 88 YPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
YP DP T+++L H P R SW TC
Sbjct: 188 YPSDPTTRSFLRAHVDDHGEVPDCARRSWATC 219
>gi|448534698|ref|ZP_21621856.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
gi|445704309|gb|ELZ56226.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
Length = 236
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 28 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 87
+A+ P++ + AD+ P+V AS+VAKVTRD + + A + + GSG
Sbjct: 133 RAEGGDPVPAVDVTAAHGADADDPLVGAASVVAKVTRDAAM---ATVDAAYPEYDDVGSG 189
Query: 88 YPGDPETK----AWLTDHKHIIFGFPSLVRFSWGTC 119
YP DP T+ A++ DH + P R SW TC
Sbjct: 190 YPSDPATRSFIAAYVGDHGRL----PDCARESWATC 221
>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
Length = 219
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-FGSGYPGDPETKAW 97
K + KAD Y VV ASI+AK RD + E +++ GSGYP DP+TK +
Sbjct: 127 KVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNKDGIGSGYPSDPKTKNF 186
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L ++K+ P VR SWGT
Sbjct: 187 LKNYKY--DEMPDFVRRSWGTV 206
>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
gi|189043623|sp|A2STJ6.1|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
Length = 212
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
VYLD +A+++ + + S V S+ KAD+ Y VV ASIVAKVTRDR + +
Sbjct: 97 VYLDACDVNAKRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAKVTRDRCIAD-LK 155
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
EE E GSGYP DP T ++LT++ P R SW T
Sbjct: 156 EEYGE-----IGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQT 195
>gi|386002343|ref|YP_005920642.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
gi|357210399|gb|AET65019.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
Length = 207
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET-- 94
S++ V +AD +PVV+ ASI+AKV RD ++R E + + R GSGYP DP T
Sbjct: 122 SMEVVAEHRADRNHPVVAAASILAKVRRDLSVR-----EIEKAVGREIGSGYPSDPATIR 176
Query: 95 --KAWLTDHKHIIFGFPSLVRFSWGTC 119
++W+ +H P + R SW T
Sbjct: 177 FLESWVGEHGD----LPPVARQSWKTA 199
>gi|448437393|ref|ZP_21587416.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
gi|445681120|gb|ELZ33559.1| ribonuclease HII [Halorubrum tebenquichense DSM 14210]
Length = 238
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 22 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
GD E+ ++ P++ + AD+ P+V AS+VAKVTRD + + A +
Sbjct: 131 GDGERPES--GDPVPAVDVTAAHGADADDPLVGAASVVAKVTRDAEM---ATVDAAYPEY 185
Query: 82 RNFGSGYPGDPETK----AWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+ A++ DH + P R SW TC
Sbjct: 186 DGVGSGYPSDPATRSFIAAYVGDHGTL----PDCARESWATC 223
>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
Length = 215
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+ K + L + FP + +V KK D+ P + ASIVAK R+R +
Sbjct: 105 VCVDIVGNGAKQRRALGEVFPDV--IVMKKGDASCPAAAAASIVAKEARERHV------S 156
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ +FGSGYP DP+T WL+ + P +VR W T
Sbjct: 157 QLRARYGDFGSGYPSDPKTLRWLS----VTRPLPPIVRKKWKT 195
>gi|448440394|ref|ZP_21588557.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
gi|445690290|gb|ELZ42505.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
Length = 234
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 94
P++ + AD PVV AS+VAKV RDR + + A + GSGYP DP T
Sbjct: 138 LPTVDVSAAHGADEDDPVVGAASVVAKVARDRRMADIDADYPA---YDGLGSGYPSDPTT 194
Query: 95 ----KAWLTDHKHIIFGFPSLVRFSWGTC 119
+A++ DH + P R +W TC
Sbjct: 195 RDFLRAYVDDHGDV----PDCARRTWATC 219
>gi|389860356|ref|YP_006362595.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
gi|388525259|gb|AFK50457.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
Length = 231
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 14 FQVYLDTVGDAEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
++Y+D + AE + S + FV+ +ADS YP VS ASI+AK RD ++
Sbjct: 106 VEIYVDEIKGAESKLRRFSMELYGDKLVVFVMEPEADSKYPAVSLASIIAKTLRDESI-- 163
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ + ++GSGY DP+T W+T++ + P +VR W
Sbjct: 164 ----QPGRVLFGDYGSGYSADPKTVKWVTEYSK-VSPPPLIVRRKW 204
>gi|397780747|ref|YP_006545220.1| ribonuclease HII [Methanoculleus bourgensis MS2]
gi|396939249|emb|CCJ36504.1| ribonuclease HII [Methanoculleus bourgensis MS2]
Length = 216
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 17 YLDTVG-DAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
Y+D +AE+Y ++ FP + +AD+ Y +V AS+VAKVTRDR ++
Sbjct: 106 YVDACDVNAERYGRTVTDYLDFPC-DIISEHRADARYKIVGAASVVAKVTRDRAIKDL-- 162
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ + N GSGYP DP T +L + P R SW T T+
Sbjct: 163 ----DEQYGNIGSGYPSDPVTIEFLRGYVRDYGNPPPCARRSWKTVTN 206
>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
gi|226736826|sp|B6YVT5.1|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
Length = 227
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 40 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 99
+ KAD + VS ASI+AKV RDR + E ++ + GSGYP DP T+ +L
Sbjct: 128 IIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYGEIGSGYPSDPRTRTFLE 181
Query: 100 DHKHIIFGFPSLVRFSWGTC 119
++ FP +VR +W T
Sbjct: 182 EYYRKHGEFPPIVRRTWKTL 201
>gi|448397461|ref|ZP_21569494.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
gi|445672560|gb|ELZ25131.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
Length = 223
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DAE++ ++S + V + AD P+V ASI+AKV RD + E
Sbjct: 116 DAERFARRVSDTCSLERLAVDARHGADDDSPLVGAASIIAKVERDAHIATLAAE------ 169
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYPGD T+A+LT + P R SW TC
Sbjct: 170 YGPIGSGYPGDSTTRAFLTSYVDAHGELPPFARESWSTC 208
>gi|395646404|ref|ZP_10434264.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
gi|395443144|gb|EJG07901.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
Length = 212
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 17 YLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
Y+D + E+Y A ++ + AD+L+PVVS ASIVAKV+RDR I E
Sbjct: 98 YVDACDVNEERYAATVTALGSPCPVIARHHADALFPVVSAASIVAKVSRDRR----IIE- 152
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ GSGYP D T A+L + P R SW T KD
Sbjct: 153 -LQEAFGAIGSGYPSDTVTIAYLREQIRADGVPPVFARRSWKTVEEMMKD 201
>gi|448406608|ref|ZP_21573062.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
gi|445677179|gb|ELZ29682.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
Length = 252
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 36 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 95
P I AD Y VV ASIVAKV RD + E + + GSGYPGD T+
Sbjct: 128 PPIDARAEHGADETYVVVGAASIVAKVARDAHVEALAEE------YGDVGSGYPGDDTTR 181
Query: 96 ----AWLTDHKHIIFGFPSLVRFSWGTCT 120
++ DH+ + P+ R SW TCT
Sbjct: 182 DFLEGYVADHEEL----PACARASWQTCT 206
>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
Length = 234
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 14 FQVYLDTVGD--AEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
YLD GD A +++ +++ R + + AD+ YP+V ASI+AKV RD
Sbjct: 117 LATYLDA-GDTNAVRFERRVADRIEADLDLRAEHGADAAYPIVGAASIIAKVERD----A 171
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ E AE + + GSGYPGD T+ +L D+ P+ R SW T
Sbjct: 172 HVAELAAE--YGDLGSGYPGDSTTRDFLEDYIAEHGELPACARESWQT 217
>gi|429857939|gb|ELA32776.1| ribonuclease hi large subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 320
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKA--DSLYPVVSGASIVAKVTRDRTLRG 70
+ ++Y+DTVG YQAKL + FP+ K V++ A + LY + +
Sbjct: 178 VAEIYVDTVGQPAAYQAKLQRFFPATKITVTRDAALEVLYRARAPEA------------- 224
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF--KDIVE 128
+GSGYP D W+ + H +FG+ RFSWGT K ++
Sbjct: 225 -----AEAEEGMAWGSGYPSDQRCVTWMRGNMHPVFGWGPECRFSWGTAKDMLEAKGSLK 279
Query: 129 VLWESDE 135
V W D+
Sbjct: 280 VEWPVDD 286
>gi|344210764|ref|YP_004795084.1| RNAase HII [Haloarcula hispanica ATCC 33960]
gi|343782119|gb|AEM56096.1| RNAase HII [Haloarcula hispanica ATCC 33960]
Length = 211
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ +++ + + AD P+V ASIVAKV RD + E +
Sbjct: 105 DAARFGRRVADAVDTDVAVTAEHGADETDPLVGAASIVAKVARDAHVADLAEE------Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+A+L D+ P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|448668246|ref|ZP_21686377.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
gi|445768328|gb|EMA19413.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
Length = 211
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
+ AD P+V ASI+AKV RD + E + + GSGYP DP T+A+
Sbjct: 121 VTVTAEHGADETDPLVGAASIIAKVARDEHVAALAEE------YGDVGSGYPSDPTTRAF 174
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L D+ P+ R SW TC
Sbjct: 175 LADYVDRHGELPACARRSWSTC 196
>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
gi|121694604|sp|A0B796.1|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
Length = 211
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
I + AD + VV+ ASI+AKV RDR++R E A + R GSGYP DP T
Sbjct: 127 IDILAEHNADRKHIVVAAASIIAKVARDRSIRDL---EAA--LGRPLGSGYPSDPATVRF 181
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGTC 119
K W+ ++ + PS VR SW T
Sbjct: 182 LKEWIEENGDL----PSFVRKSWSTA 203
>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
Length = 205
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 17 YLDTVG-DAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
Y+D +AE+Y +++ +P + V AD+ + VV AS+VAKVTRDR +R
Sbjct: 95 YVDACDVNAERYGRTVAELLDYPC-EIVAEHHADARHKVVGAASVVAKVTRDRAIREL-- 151
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
E + GSGYP DP T +L + P+ R SW T T+
Sbjct: 152 ----EQQYGAIGSGYPSDPATIEFLRGYIRSHGSPPACARRSWKTVTN 195
>gi|448320192|ref|ZP_21509680.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
gi|445606598|gb|ELY60502.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
Length = 222
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD P+V AS+VAKV RD ++ E + GSGYP DP T+A+L +
Sbjct: 140 ADDQDPIVGAASVVAKVERDASMAALADE------YGPVGSGYPSDPTTRAFLESYVADH 193
Query: 106 FGFPSLVRFSWGTCTSHFKD 125
P R SW TC D
Sbjct: 194 DSLPPFARESWSTCADVLAD 213
>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
Length = 192
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+ + K+ + +K V AD Y S ASI+AKVTRDR + +
Sbjct: 84 VTIDKVGNEDIVIMKIREL--GLKDNVVFNADVKYIEASAASIIAKVTRDRII------D 135
Query: 76 TAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTC 119
+ + ++ +FGSGYP DP+T+ W+ + ++ P ++R +W T
Sbjct: 136 SLKKIYGDFGSGYPSDPKTRKWIIEIYEKDKNNPPPIIRRTWKTL 180
>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
gi|11387092|sp|P57673.1|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
Length = 212
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ ++ Q + V KAD+++P VS ASIV+KV RD + +
Sbjct: 101 VYIDCYDVIEERAQEIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------D 154
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ +FGSGYP DP T +L + +VR W T
Sbjct: 155 RLHDRFGDFGSGYPSDPRTIDFLKKYLKENQDPSEIVRIHWST 197
>gi|333986451|ref|YP_004519058.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
gi|333824595|gb|AEG17257.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
Length = 202
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
++++A++ +++ V KAD Y +VS ASIVAKV RD ++ E +
Sbjct: 112 KRFKAEIETYKENLEVVAEHKADDKYVIVSAASIVAKVERDSEVQKIRKE------FKEI 165
Query: 85 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
GSGYP DP+T A+L + P VR SW T
Sbjct: 166 GSGYPSDPKTIAFLKKTSY--EDLPDFVRKSWAT 197
>gi|399577795|ref|ZP_10771547.1| rnase hii [Halogranum salarium B-1]
gi|399237237|gb|EJN58169.1| rnase hii [Halogranum salarium B-1]
Length = 219
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
I V AD + +V ASIVAKV RD + E A + + GSGYP DP+T
Sbjct: 126 IDVVSEHGADETHGIVGAASIVAKVERDSMVEAIAAEYDA---YGDVGSGYPSDPKTRRF 182
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGTCT 120
KA++ DH + P R SW TC
Sbjct: 183 LKAYVADHGDV----PDCARRSWSTCA 205
>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
Length = 206
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 15 QVYLDTV-GDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
+V LD++ ++EKY F P+ + + KAD Y V ASI+AKV RD+ ++
Sbjct: 107 KVILDSIESNSEKYSLPFKSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIKSL 166
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
E + + GSGYP D T ++ + F +P +R SW
Sbjct: 167 EIE-----LDQTIGSGYPSDSITTEFVNSYLKKNFEYPDSMRRSW 206
>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
Length = 212
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 104
+AD L PVVS ASIVAKV RDR + E+ + + +FGSGY D T +L ++
Sbjct: 131 RADVLKPVVSAASIVAKVERDREI-----EKIKKELGVDFGSGYASDKRTIEFLKEYFKE 185
Query: 105 IFGFPSLVRFSWGT----CTSHFKD 125
FP VR SW T C +D
Sbjct: 186 HGRFPPYVRRSWKTLDRICQQSLED 210
>gi|11498229|ref|NP_069455.1| ribonuclease HII [Archaeoglobus fulgidus DSM 4304]
gi|7388077|sp|O29634.1|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
Length = 205
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+D+ + ++ + ++ V KAD YP+V+ ASI+AKV R+R + E
Sbjct: 99 YVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ER 152
Query: 77 AENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ +FGSGY DP T K W+ + PS VR W T ++
Sbjct: 153 LKEKFGDFGSGYASDPRTREVLKEWIASGR-----IPSCVRMRWKTVSN 196
>gi|335436880|ref|ZP_08559669.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
gi|334897145|gb|EGM35282.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
Length = 256
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 14 FQVYLDTVGD--AEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
YLD GD A +++ +++ R + + AD+ YP+V ASIVAKV RD +
Sbjct: 139 LATYLDA-GDTNAVRFERRVADRVEADLDLRAEHGADAAYPIVGAASIVAKVERDAHVAA 197
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
E + + GSGYPGD T+A+L + P+ R SW T
Sbjct: 198 LAAE------YGDLGSGYPGDSTTRAFLERYIEEHGELPACARESWQT 239
>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+D+ + ++ + ++ V KAD YP+V+ ASI+AKV R+R + E
Sbjct: 119 YVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ER 172
Query: 77 AENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ +FGSGY DP T K W+ + PS VR W T ++
Sbjct: 173 LKEKFGDFGSGYASDPRTREVLKEWIASGR-----IPSCVRMRWKTVSN 216
>gi|432330429|ref|YP_007248572.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
gi|432137138|gb|AGB02065.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
Length = 213
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 14/77 (18%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET----KAWLTDH 101
AD +PVVS ASI+AKVTRDR + T + + GSGYP DP T W+ +H
Sbjct: 130 ADEKFPVVSAASIIAKVTRDRAI------ATLSKKYGDLGSGYPSDPVTIRFLNDWIDEH 183
Query: 102 KHIIFGFPSLVRFSWGT 118
+ P + R SW T
Sbjct: 184 R----TPPPIARKSWKT 196
>gi|223476982|ref|YP_002581715.1| Ribonuclease HII [Thermococcus sp. AM4]
gi|214032208|gb|EEB73038.1| Ribonuclease HII [Thermococcus sp. AM4]
Length = 230
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
VY+D E + R S K V +AD + VS ASI+AKV RDR +
Sbjct: 106 VYIDAADVKEGRFGEAVGRLLSFKAEIVAEHRADDKFVPVSAASILAKVVRDRAI----- 160
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+ +L + FP +VR +W T
Sbjct: 161 -ERLKREYGEIGSGYPSDPRTREFLEKYYREHGDFPPIVRKTWKTV 205
>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+D+ + ++ + ++ V KAD YP+V+ ASI+AKV R+R + E
Sbjct: 111 YVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ER 164
Query: 77 AENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ +FGSGY DP T K W+ + PS VR W T ++
Sbjct: 165 LKEKFGDFGSGYASDPRTREVLKEWIASGR-----IPSCVRMRWKTVSN 208
>gi|435846199|ref|YP_007308449.1| RNase HII [Natronococcus occultus SP4]
gi|433672467|gb|AGB36659.1| RNase HII [Natronococcus occultus SP4]
Length = 224
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK-- 95
++ + AD P+V AS+VAKV RD ++ E + + GSGYP DP T+
Sbjct: 134 LELTAAHGADDEDPIVGAASVVAKVERDASMAALADE------YGSVGSGYPSDPTTREF 187
Query: 96 --AWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+++ DH + P R SW TC D
Sbjct: 188 LESYVADHGEL----PPFARESWSTCADVLAD 215
>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
gi|448287053|ref|ZP_21478269.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
gi|445572799|gb|ELY27329.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
Length = 224
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
+ V +AD YP V AS+VAKV RD TL I E + + GSGYP DP T+ +
Sbjct: 131 VTVVSEHRADETYPHVGAASVVAKVRRD-TLMETIGERYED--YGPVGSGYPSDPTTREF 187
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L + P R SW TC
Sbjct: 188 LRTYVSETGELPDCARASWATC 209
>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
Length = 234
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 36 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET- 94
P + + AD P+V AS+VAKV RD + + A + GSGYP DP T
Sbjct: 139 PEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPA---YDGLGSGYPSDPATR 195
Query: 95 ---KAWLTDHKHIIFGFPSLVRFSWGTC 119
+A++ DH ++ P R SW TC
Sbjct: 196 NFLRAYVNDHGNV----PGCARRSWATC 219
>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|384432732|ref|YP_005642090.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|74539626|sp|Q97W56.1|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
Length = 212
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VGD EK +L + K V KAD L+ S ASI+AKV RD + +
Sbjct: 100 VTVDKVGD-EKPVIELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDN------YID 151
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ ++ +FGSGYP DP T WL P ++R SW S
Sbjct: 152 ELKQVYGDFGSGYPADPRTIKWLKSFYEKNPNPPPIIRRSWKILRS 197
>gi|448689619|ref|ZP_21695203.1| ribonuclease HII [Haloarcula japonica DSM 6131]
gi|445777890|gb|EMA28850.1| ribonuclease HII [Haloarcula japonica DSM 6131]
Length = 211
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ +++ + + AD P+V ASI+AKV RD + E AE +
Sbjct: 105 DAARFGRRVADAVDADVTVTAEHGADETDPLVGAASIIAKVARDVHVT-----ELAEE-Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+ +L D+ P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRTFLADYVDSHGELPACARRSWSTC 196
>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
Length = 255
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 2 HDRSGKNLHFFIFQVYLDTVGDAEK--YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 59
H +G ++ + Y D +G+ + Y+ +++ + +AD+ YP VS AS+V
Sbjct: 107 HQGTGVRIYIDEVKGYNDKIGECARGLYRG-------NVEIFIESRADAKYPAVSAASVV 159
Query: 60 AKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117
AK+ RD ++ I ET GSGYP DP ++ WL + P +R SWG
Sbjct: 160 AKILRDSNIKALQVIAGET--------GSGYPSDPVSRRWLANMYRDDGEPPVYIRKSWG 211
Query: 118 TC 119
Sbjct: 212 IV 213
>gi|448679235|ref|ZP_21690072.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
gi|445771333|gb|EMA22390.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
Length = 211
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ +++ + + AD VV ASI+AKV RD + E +
Sbjct: 105 DATRFGRRVADAVDADVTVTAEHGADETDTVVGAASIIAKVARDAHVAELAVE------Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+A+L D+ P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|448311343|ref|ZP_21501107.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
gi|445605171|gb|ELY59102.1| ribonuclease HII [Natronolimnobius innermongolicus JCM 12255]
Length = 242
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD P+V ASIVAKV RD + A + + GSGYP DP T+A+L +
Sbjct: 157 ADDESPIVGAASIVAKVERDAHVESL---SAAYDAYETVGSGYPSDPNTQAFLEAYVDDH 213
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 214 GELPVCARESWSTC 227
>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
Length = 250
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
Query: 8 NLHFFIFQVYLDTVGDA-----EKYQAKLSQRF---PSIK--FVVSKKADSLYPVVSGAS 57
N H +F LD + DA E++ ++S+R P +K + KAD+ + +V GAS
Sbjct: 103 NRHHRLFTQELDILLDACDVNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGAS 162
Query: 58 IVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIF--GFPSLVRFS 115
I+AKV RD + E A ++ GSGYP DP T L ++I G +R+S
Sbjct: 163 ILAKVVRDMEI-----ERIAVDVGAPVGSGYPADPNTVKALP---YLIKEDGIHEEIRWS 214
Query: 116 WGTC 119
W T
Sbjct: 215 WATV 218
>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|448294621|ref|ZP_21484700.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|445586298|gb|ELY40580.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
Length = 214
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 23 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ ++ QR P + AD + +V AS+VAKV RDR + E +
Sbjct: 108 DAGRFVHRVGQRLPEGVSLSGEHGADEHHAIVGAASVVAKVERDRRVAAL------EAAY 161
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
GSGYP DP T+ +L ++ P R SW T
Sbjct: 162 GEVGSGYPSDPTTREFLAEYVAENGELPECARASWKT 198
>gi|390937865|ref|YP_006401603.1| RNase HII [Desulfurococcus fermentans DSM 16532]
gi|390190972|gb|AFL66028.1| RNase HII [Desulfurococcus fermentans DSM 16532]
Length = 255
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 14 FQVYLDTVGDAEKYQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
++Y+D V + Y K+ + +++ + +AD+ YP VS AS+VAK+ RD +
Sbjct: 112 VRIYIDEV---KGYNGKIGECARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNI 168
Query: 69 RGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ I ET GSGYP DP ++ WL + P +R SWG
Sbjct: 169 KALQVIAGET--------GSGYPSDPVSRRWLANMYRDDGEPPVYIRRSWGIV 213
>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284996585|ref|YP_003418352.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385772204|ref|YP_005644770.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
gi|385774919|ref|YP_005647487.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
Length = 212
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+ EK +L ++ K V KAD L+ S ASI+AKV RD + +
Sbjct: 100 VTVDKVGE-EKPVIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDN------YID 151
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ ++ +FGSGYP DP T WL P +VR SW S
Sbjct: 152 ELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNPPPIVRRSWKILRS 197
>gi|448415068|ref|ZP_21577939.1| ribonuclease HII [Halosarcina pallida JCM 14848]
gi|445681186|gb|ELZ33622.1| ribonuclease HII [Halosarcina pallida JCM 14848]
Length = 224
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
++ +AD YP V AS+VAKV RD + + TA + GSGYP DP T+
Sbjct: 130 AVSVTAEHRADETYPHVGAASVVAKVERDARMAEIDEDVTA---YGPVGSGYPSDPTTRE 186
Query: 97 WLTDHKHIIFGFPSLVRFSWGTC 119
+L + P R SW TC
Sbjct: 187 FLRRYVGETGELPDCARASWSTC 209
>gi|374328021|ref|YP_005086221.1| ribonuclease HII [Pyrobaculum sp. 1860]
gi|356643290|gb|AET33969.1| ribonuclease HII [Pyrobaculum sp. 1860]
Length = 195
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 82
DA++Y + LS F + + VV+ P V+ ASIVAKV RDR L E +
Sbjct: 106 DADRYGSGLS--FLTGRRVVALHKGEKVPQVAAASIVAKVVRDRLL------EVVKREVG 157
Query: 83 NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFK 124
+FGSGYP D +T WL P VR+SWGT FK
Sbjct: 158 DFGSGYPSDRKTVEWLRAGL-----VPRECVRWSWGTVGKLFK 195
>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
Length = 226
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
+ V +AD + VS ASI+AKV RDR + E + + GSGYP DP T+ +L
Sbjct: 129 EIVAEHRADDKFVPVSAASILAKVVRDRAI------EKLKEEYGEIGSGYPSDPRTRDFL 182
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
+ FP +VR +W T
Sbjct: 183 ERYYREHGDFPPIVRRTWKTV 203
>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
Length = 212
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+ EK +L ++ K V KAD L+ S ASI+AKV RD + +
Sbjct: 100 VTVDKVGE-EKPVIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDN------YID 151
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ ++ +FGSGYP DP T WL P +VR SW S
Sbjct: 152 ELKKVYGDFGSGYPADPRTIKWLKSFYEKNPNPPPIVRRSWKILRS 197
>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
DSM 2375]
gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
gi|189043626|sp|A5ULV6.1|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
gi|222434841|gb|EEE42006.1| ribonuclease HII [Methanobrevibacter smithii DSM 2375]
gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
Length = 207
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 24 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83
AE++Q KL+ + V KAD Y VS ASI+AK RD I E + +
Sbjct: 111 AERFQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQERD----AHIAEINKDYIKMG 165
Query: 84 -FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP TK +LT+ + P VR SW T
Sbjct: 166 GIGSGYPSDPITKKFLTNFTY--DEMPDFVRKSWATV 200
>gi|448475115|ref|ZP_21602833.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
gi|445816586|gb|EMA66473.1| ribonuclease HII [Halorubrum aidingense JCM 13560]
Length = 260
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 94
P + + AD P+V AS+VAKV RD + + T + + GSGYPGD T
Sbjct: 164 LPGVDVEAAHGADEDDPLVGAASVVAKVARDARMDA--IDATYPD-YAAVGSGYPGDATT 220
Query: 95 KAWLTDHKHIIFGFPSLVRFSWGTC 119
+A+L D+ P R SW TC
Sbjct: 221 RAFLRDYVADHGEVPDCARRSWSTC 245
>gi|448366041|ref|ZP_21554295.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
gi|445654650|gb|ELZ07501.1| ribonuclease HII [Natrialba aegyptia DSM 13077]
Length = 241
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ +++ +++ AD P+V ASIVAKV RD + ET +
Sbjct: 135 DAERFARRVTDACTLNLELDARHGADEDSPIVGAASIVAKVARDAHV------ETIADEF 188
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+ +L + P + R SW TC
Sbjct: 189 GSVGSGYPSDPTTREFLERYVDEHGELPPVARTSWATC 226
>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
gi|115305552|sp|Q3IRF6.1|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|76557704|emb|CAI49287.1| ribonuclease H, type 2 [Natronomonas pharaonis DSM 2160]
Length = 212
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
+ AD +V ASI+AK R+R + E + GSGYP DP TKA+
Sbjct: 122 VSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYGAVGSGYPSDPTTKAF 175
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L + GFP VR SW TC
Sbjct: 176 LREAFEQEGGFPPCVRTSWSTC 197
>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
Length = 208
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG E +L +R + VV K AD L+ S ASI+AKV RD + E
Sbjct: 100 VTVDKVGK-ETEVIELIERLGFVANVVHK-ADELFIEASSASIIAKVIRDNII------E 151
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ + +FGSGYP DP+T W+ D P+++R SW
Sbjct: 152 RLKLKYGDFGSGYPSDPKTIRWVKDLVSKGEEPPNIIRKSW 192
>gi|448465151|ref|ZP_21598718.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
gi|445815126|gb|EMA65061.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
Length = 238
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 94
P + + AD P+V AS+VAKV RD+ + + + GSGYP DP T
Sbjct: 142 LPEVDVSAAHGADEDDPLVGAASVVAKVARDQRM---AAVDADYAAYDGVGSGYPSDPTT 198
Query: 95 ----KAWLTDHKHIIFGFPSLVRFSWGTC 119
+A++ DH + P R SW TC
Sbjct: 199 RSFLRAYVDDHGDV----PDCARRSWATC 223
>gi|448355147|ref|ZP_21543900.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
gi|445635912|gb|ELY89077.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
Length = 221
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ R ++ ++ + AD PVV ASI+AKV RD + E++
Sbjct: 112 DADRFARRVADRC-GLECTITAEHGADDDSPVVGAASIIAKVERDAHV---------ESI 161
Query: 81 HRNF------GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
F GSGYP DP T+A+L + P+ R SW TC
Sbjct: 162 SAGFPDCGPVGSGYPSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|448384513|ref|ZP_21563351.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
gi|445658579|gb|ELZ11397.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
Length = 223
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ V + AD P+V ASIVAKV RD + E
Sbjct: 116 DADRFARRVADACSLEALTVDARHGADDESPLVGAASIVAKVERDSHVAALADE------ 169
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYPGD T+ +L D+ P R SW TC
Sbjct: 170 YGPIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|448282223|ref|ZP_21473512.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|445576857|gb|ELY31305.1| ribonuclease HII [Natrialba magadii ATCC 43099]
Length = 221
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRG--WIFEETAE 78
DA+++ +++ R ++ +S + AD P+V ASI+AKV RD + F +
Sbjct: 112 DADRFARRVADRC-GLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCGP 170
Query: 79 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+A+L + P+ R SW TC
Sbjct: 171 -----VGSGYPSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|448363470|ref|ZP_21552070.1| ribonuclease HII [Natrialba asiatica DSM 12278]
gi|445646283|gb|ELY99272.1| ribonuclease HII [Natrialba asiatica DSM 12278]
Length = 237
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ +++ ++ AD P+V ASIVAKV RD + ET +
Sbjct: 131 DAERFARRVTDACTLELELDARHGADEDSPIVGAASIVAKVARDAHV------ETIADEF 184
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+ +L + P + R SW TC
Sbjct: 185 GSVGSGYPSDPTTREFLERYVDEHGELPPVARTSWATC 222
>gi|448350813|ref|ZP_21539624.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
gi|445635685|gb|ELY88852.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
Length = 254
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD P+V ASIVAKV RD + ET + + GSGYP DP T+ +L +
Sbjct: 172 ADENSPIVGAASIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEH 225
Query: 106 FGFPSLVRFSWGTC 119
P + R SW TC
Sbjct: 226 GELPPVARASWATC 239
>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
Length = 507
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRGW 71
++ +D++ + +KY FP + + KAD + V ASI+AKV RDR W
Sbjct: 241 KIIIDSIEMNTQKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDR----W 296
Query: 72 IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ ++ N GSGYP DP T +++ + + +P+ +R SW
Sbjct: 297 M-KQLETNTSHIIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
>gi|429191022|ref|YP_007176700.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|448327412|ref|ZP_21516740.1| ribonuclease HII [Natronobacterium gregoryi SP2]
gi|429135240|gb|AFZ72251.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|445608510|gb|ELY62349.1| ribonuclease HII [Natronobacterium gregoryi SP2]
Length = 221
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD PVV ASIVAKV RD + I EE + + GSGYP DP T+ +L +
Sbjct: 139 ADDDSPVVGAASIVAKVERDAHV-AAISEE-----YGDVGSGYPSDPTTREFLESYVDDH 192
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 193 GELPPFARSSWSTC 206
>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
gi|74516083|sp|Q5UXT4.1|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
Length = 211
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ +++ + + AD +V ASI+AKV RD + E AE +
Sbjct: 105 DAARFGRRVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+ +L D+ P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
Length = 205
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--GSGYPGDPETKAWLTDHKH 103
ADS + VVS ASI+AKVTRDR + E + + + GSGYP D +T ++T +
Sbjct: 133 ADSRFVVVSAASIIAKVTRDRAI---------EKLRKTYDLGSGYPSDSKTVKFVTRYYK 183
Query: 104 IIFGFPSLVRFSW 116
P+ VR SW
Sbjct: 184 TSKSLPTFVRKSW 196
>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 212
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET---- 94
K + KADS YPVVS ASI+AKV RDR ++ + +++ GSGYP D +T
Sbjct: 125 KVISEHKADSKYPVVSAASIIAKVVRDREVK-----KIEKSLRIRIGSGYPSDSKTIDAV 179
Query: 95 KAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ LT+ S VR W T S
Sbjct: 180 RGNLTNS-----ALLSHVREHWSTMRS 201
>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449066967|ref|YP_007434049.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449069239|ref|YP_007436320.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
gi|109896186|sp|Q4JA60.1|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449035475|gb|AGE70901.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449037747|gb|AGE73172.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
Length = 212
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+A + ++ S + V AD Y VS ASI+AKV RD +
Sbjct: 101 VTVDKVGNASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------N 152
Query: 76 TAENMHRNFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSW 116
+ + +FGSGYPGD +T W+ D + + P ++R SW
Sbjct: 153 ELKKTYGDFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>gi|433592396|ref|YP_007281892.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|448333742|ref|ZP_21522931.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
gi|433307176|gb|AGB32988.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|445621621|gb|ELY75092.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
Length = 223
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 23 DAEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ P ++ AD +V AS+VAKV RD + E
Sbjct: 116 DADRFARRVADACPLEAVSIDARHGADDESTLVGAASVVAKVERDAHVAALADE------ 169
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYPGD T+ +L D+ P R SW TC
Sbjct: 170 YGEIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|448654674|ref|ZP_21681600.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
gi|445766522|gb|EMA17649.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
Length = 211
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD +V ASI+AKV RD + E AE + + GSGYP DP T+ +L+D+
Sbjct: 129 ADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGYPSDPTTRTFLSDYVDRH 182
Query: 106 FGFPSLVRFSWGTC 119
P+ R SW TC
Sbjct: 183 GELPACARRSWSTC 196
>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
gi|7227913|sp|O27102.1|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 206
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+V +D+V E+ + ++ F I+ AD+ Y V+ ASI+AKV RD +
Sbjct: 101 RVIIDSVDVKPERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI----- 155
Query: 74 EETAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E+ + +R + GSGYP DP T+ +L + P VR SW T
Sbjct: 156 -ESIQKKNRKLGDIGSGYPSDPRTREFLESFTY--DELPDFVRRSWATV 201
>gi|383620733|ref|ZP_09947139.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|448698324|ref|ZP_21698963.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|445780943|gb|EMA31813.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
Length = 223
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD P+V ASIVAKV RD + E + + GSGYPGD T+ +L+D+
Sbjct: 141 ADDDSPLVGAASIVAKVERDAHVAAIADE------YGDVGSGYPGDSTTREFLSDYVAEH 194
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 195 GELPPFARSSWSTC 208
>gi|448318842|ref|ZP_21508353.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
gi|445597681|gb|ELY51754.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
Length = 220
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 51 PVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS 110
P+V AS+VAKV RD ++ E + GSGYP DP T+ +L + P
Sbjct: 143 PIVGAASVVAKVERDASMAALADE------YGPVGSGYPSDPTTRTFLESYVADRGELPP 196
Query: 111 LVRFSWGTCTSHFKD 125
R SW TC D
Sbjct: 197 FARASWSTCEDVLAD 211
>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
gi|189043570|sp|A8MAH5.1|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
Length = 209
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
++ +V AD P+VS ASIVAKV RD + +ET + +FGSGYP DP T
Sbjct: 126 VELIVLNHADESIPLVSAASIVAKVIRDTIISR--LKET----YGDFGSGYPSDPRTISA 179
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGT 118
+ W+ + P +VR SW T
Sbjct: 180 LRRWINNGT-----LPPIVRRSWRT 199
>gi|448641404|ref|ZP_21678014.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
gi|445760818|gb|EMA12074.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
Length = 211
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD +V ASI+AKV RD + E AE + + GSGYP DP T+ +L D+
Sbjct: 129 ADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSGYPSDPTTRTFLADYVDRH 182
Query: 106 FGFPSLVRFSWGTC 119
P+ R SW TC
Sbjct: 183 GELPACARRSWSTC 196
>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
gi|74574695|sp|Q974Z3.1|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|342306230|dbj|BAK54319.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
Length = 208
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ F ++ +D VG+ + + ++ + V + AD + S ASI+AKV RD +
Sbjct: 94 VEFKPIRISIDKVGNTKVVEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII 151
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+T ++ + +FGSGYP DP+T W+ + P ++R SW
Sbjct: 152 ------DTLKSKYGDFGSGYPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>gi|386876647|ref|ZP_10118743.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
gi|386805548|gb|EIJ65071.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
Length = 206
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
ADS + +VS ASI+AKV RDR + T N GSGYP D T ++T++
Sbjct: 133 ADSRFVIVSAASILAKVARDRAI-------TKLRKDHNLGSGYPSDSVTVKFVTNYYKKN 185
Query: 106 FGFPSLVRFSW 116
PS VR SW
Sbjct: 186 HVMPSFVRKSW 196
>gi|448360110|ref|ZP_21548753.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
gi|445640487|gb|ELY93575.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
Length = 221
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRG--WIFEETAE 78
DA+++ +++ + ++ ++ + AD P+V ASI+AKV RD + F +
Sbjct: 112 DADRFARRVADQC-GLECTITAEHGADDDSPIVGAASIIAKVERDAHVESVSAAFPDCGP 170
Query: 79 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+A+L + PS R SW TC
Sbjct: 171 -----VGSGYPSDPNTRAFLESYVDAHGKLPSCARESWSTC 206
>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
Length = 210
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ +++ R S I + AD P+V ASIVAK R+ + E A
Sbjct: 104 DAERFGRRVADRVDSEIDLGSAHGADETDPLVGAASIVAKSAREAHVAALADEFGA---- 159
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+ +L + P R SW TC
Sbjct: 160 --VGSGYPSDPATREFLKRYVDEHGALPDCARTSWSTC 195
>gi|448730927|ref|ZP_21713230.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
gi|445792521|gb|EMA43122.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
Length = 223
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ ++ + + + AD Y +V AS+VAKV RD + E H
Sbjct: 117 DAERFGRRVREATTADVAITAEHGADEEYDLVGAASVVAKVARDAHIADLADE------H 170
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ GSGYP DP T+ +L + H P R SW T
Sbjct: 171 GSVGSGYPSDPTTRDFLARYVHEHGDLPPFARRSWKT 207
>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
Length = 830
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 38 IKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
++ V+SK AD+ PVV ASIVAKV RD+ + + A++ N GSGYP DP T++
Sbjct: 133 VETVISKHGADAENPVVGAASIVAKVHRDK-----VIQSIAKDRGFNVGSGYPSDPNTRS 187
Query: 97 WLTDHKHIIFGFPSL-VRFSWGTCTSHFKD 125
L + + P L +R+ W T H+ +
Sbjct: 188 ALP--RLLSQEQPDLDLRWGWKTVEKHWSE 215
>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
Length = 207
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
V +D+V E+ ++ F I+ AD+ Y V+ ASI+AKV RD +
Sbjct: 102 VIIDSVDVKPERLTEEIRSHFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEI------ 155
Query: 75 ETAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
E + +R + GSGYP DP T+A+L + P VR SW T K+
Sbjct: 156 ERIQKRNRKLGDIGSGYPSDPRTRAFLESFSY--DELPDFVRKSWATVQKRRKN 207
>gi|448599595|ref|ZP_21655398.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
gi|445736268|gb|ELZ87812.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
Length = 215
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ S++ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 171
Query: 91 DPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ P R SW TC
Sbjct: 172 DGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448570098|ref|ZP_21639092.1| ribonuclease HII [Haloferax lucentense DSM 14919]
gi|445723399|gb|ELZ75041.1| ribonuclease HII [Haloferax lucentense DSM 14919]
Length = 215
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ S++ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 171
Query: 91 DPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ P R SW TC
Sbjct: 172 DGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448634381|ref|ZP_21674779.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
gi|445749354|gb|EMA00799.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
Length = 211
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ +++ + + AD P+V ASI+AK R+ + E AE +
Sbjct: 105 DAERFGRRVAGAVDAEVTVTAEHGADETDPLVGAASIIAKEAREAHVA-----ELAEE-Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+++L D P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRSFLADCVDRHGELPACARRSWSTC 196
>gi|448725585|ref|ZP_21708035.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
gi|445798039|gb|EMA48468.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
Length = 209
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 23 DAEKYQAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ ++ ++ ++ AD + V ASIVAKV RD + E H
Sbjct: 103 DAERFGRRVRAETATDVELAAEHGADESHEHVGAASIVAKVARDAHVADLAAE------H 156
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
GSGYPGD T+ +L ++ G P R SW T +D++E +S
Sbjct: 157 GAIGSGYPGDGTTREFLREYVREHGGLPPFARASWKTS----RDVLEAADQS 204
>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
Length = 228
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
I AD P+V AS+VAKV RD + E + GSGYP DP T+ +
Sbjct: 138 INIEARHGADDESPIVGAASVVAKVERDAHVAALADE------YGPVGSGYPNDPNTREF 191
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L + P R SW TC
Sbjct: 192 LESYVGEYGDLPPCARESWSTC 213
>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
Length = 215
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ S+ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 171
Query: 91 DPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ P R SW TC
Sbjct: 172 DGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|433422650|ref|ZP_20406055.1| ribonuclease HII [Haloferax sp. BAB2207]
gi|432198565|gb|ELK54835.1| ribonuclease HII [Haloferax sp. BAB2207]
Length = 215
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ S+ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 171
Query: 91 DPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ P R SW TC
Sbjct: 172 DGTTREFLREYVRDHGILPDCARKSWSTCA 201
>gi|448344676|ref|ZP_21533580.1| ribonuclease HII [Natrinema altunense JCM 12890]
gi|445637317|gb|ELY90468.1| ribonuclease HII [Natrinema altunense JCM 12890]
Length = 146
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ S++ V + AD P+V ASIVAKV RD + E
Sbjct: 40 DADRFARRVADAC-SVEIDVDARHGADDDAPLVGAASIVAKVDRDAHIAALADE------ 92
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYPGD T+ +L + P R SW TC
Sbjct: 93 YGPIGSGYPGDSTTREFLASYVDEHSSLPPFARESWSTC 131
>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
Length = 208
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 42 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH 101
V KAD L+ S ASIVAKV RDR + E+ + +FGSGYP D +T W+ D
Sbjct: 124 VVHKADELFVEASSASIVAKVIRDRLI------ESLKKEFGDFGSGYPSDRKTVQWVLDL 177
Query: 102 KHIIFGFPSLVRFSW 116
P+++R SW
Sbjct: 178 VSRGEEPPNIIRRSW 192
>gi|448620244|ref|ZP_21667592.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
gi|445757032|gb|EMA08388.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
Length = 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S++ +AD + +V ASIVAKV RDR + E + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEVGSGYPSDGTTRK 177
Query: 97 WLTDH--KHIIFGFPSLVRFSWGTCT 120
+L ++ +H I P R SW TC
Sbjct: 178 FLREYVREHGI--LPDCARKSWSTCA 201
>gi|448577303|ref|ZP_21642933.1| ribonuclease HII [Haloferax larsenii JCM 13917]
gi|445727948|gb|ELZ79557.1| ribonuclease HII [Haloferax larsenii JCM 13917]
Length = 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S++ +AD + +V ASIVAKV RDR + I EE E GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEA-IAEEYGE-----VGSGYPSDQTTRD 177
Query: 97 WLTD--HKHIIFGFPSLVRFSWGTCT 120
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|448607693|ref|ZP_21659646.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
gi|445737630|gb|ELZ89162.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
Length = 215
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S++ +AD + +V ASIVAKV RDR + E + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEVGSGYPSDGTTRK 177
Query: 97 WLTDH--KHIIFGFPSLVRFSWGTCT 120
+L ++ +H I P R SW TC
Sbjct: 178 FLREYVREHGI--LPDCARKSWSTCA 201
>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
Length = 212
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 36 PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETK 95
P I AD + +V ASIVAKV RD + + E+ H GSGYP DP T+
Sbjct: 120 PEITVEAEHGADETHAIVGAASIVAKVERDAHV-ARLAEQ-----HGGVGSGYPSDPNTR 173
Query: 96 AWLTDHKHIIFGFPSLVRFSWGT 118
+L ++ P R SW T
Sbjct: 174 EFLREYVEAHGELPECARASWQT 196
>gi|448394694|ref|ZP_21568366.1| ribonuclease HII [Haloterrigena salina JCM 13891]
gi|445662155|gb|ELZ14928.1| ribonuclease HII [Haloterrigena salina JCM 13891]
Length = 247
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 46 ADSLYPVVSGASIVAKVTRDR---TLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHK 102
AD P+V AS+VAKV RD L I E + + GSGYP DP T+ +L +
Sbjct: 162 ADDESPIVGAASVVAKVERDAHVAALADRIDE------YESVGSGYPSDPNTREFLASYV 215
Query: 103 HIIFGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 216 DERGELPPFARESWSTC 232
>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
gi|254807995|sp|B1YB67.1|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170933937|gb|ACB39198.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
Length = 198
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 3 DRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKV 62
D + K + VY D + + + F + + VV+ P V+ ASIVAKV
Sbjct: 87 DYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVVAMHKGESVPQVAAASIVAKV 146
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
RDR L + +E +FGSGYP DP T+ WL + P VR+SW T
Sbjct: 147 VRDR-LVALLKKEVG-----DFGSGYPSDPRTREWLKWGRL----PPECVRWSWRT 192
>gi|354610229|ref|ZP_09028185.1| ribonuclease HII [Halobacterium sp. DL1]
gi|353195049|gb|EHB60551.1| ribonuclease HII [Halobacterium sp. DL1]
Length = 210
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DAE++ +++ + + AD Y V+ ASIVAKV RD + E A H
Sbjct: 104 DAERFGRRVADAVTADVDITAEHGADDEYDFVAAASIVAKVARDSHV-----AELATG-H 157
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ GSGYP DP T+ +L+++ P R SW T
Sbjct: 158 GDVGSGYPSDPTTREFLSEYVREHGCLPDCARESWQT 194
>gi|448290099|ref|ZP_21481254.1| ribonuclease HII [Haloferax volcanii DS2]
gi|445580354|gb|ELY34738.1| ribonuclease HII [Haloferax volcanii DS2]
Length = 92
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 104
+AD + +V ASIVAKV RDR + E + + GSGYP D T+ +L ++
Sbjct: 9 RADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPSDGTTREFLREYVRD 62
Query: 105 IFGFPSLVRFSWGTCT 120
P R SW TC
Sbjct: 63 HGILPDCARKSWSTCA 78
>gi|448545094|ref|ZP_21625837.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
gi|445704612|gb|ELZ56524.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-646]
Length = 99
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ ++ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 2 LAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 55
Query: 91 DPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ +H I P R SW TC
Sbjct: 56 DGTTREFLREYVREHGI--LPDCARKSWSTCA 85
>gi|424811467|ref|ZP_18236718.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757193|gb|EGQ40774.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
Length = 217
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA+ Y+ KL R V ++ AD+ YP+VS AS+VAK R+R + E E
Sbjct: 110 DADVYEEKLLSRLDFDPEVTAEHGADAAYPIVSAASVVAKSARERHV-----ERLHEKYG 164
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+F SGYP D T +L + P R W T
Sbjct: 165 VDFDSGYPHDEATIEFLKGYVRSTGDLPDEARRQWSTS 202
>gi|340345418|ref|ZP_08668550.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520559|gb|EGP94282.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 215
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--GSGYPGDPETKAWLTDHKH 103
ADS + VVS ASI+AKVTRDR + + +N+ GSGYP D +T ++ +
Sbjct: 140 ADSRFIVVSAASIIAKVTRDRAIL---------KLRKNYDLGSGYPSDSKTIDFVASYYK 190
Query: 104 IIFGFPSLVRFSW 116
I P VR SW
Sbjct: 191 INQVLPIFVRKSW 203
>gi|397775767|ref|YP_006543313.1| ribonuclease HII [Natrinema sp. J7-2]
gi|397684860|gb|AFO59237.1| ribonuclease HII [Natrinema sp. J7-2]
Length = 222
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA+++ +++ P + AD P+V ASI+AKV RD + E +
Sbjct: 116 DADRFARRVADACPLEVDVDARHGADDDAPLVGAASIIAKVNRDAHVAALADE------Y 169
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP D T+ +L + P R SW TC
Sbjct: 170 GPIGSGYPSDATTREFLASYVDEHGSLPPFARASWSTC 207
>gi|448490375|ref|ZP_21607963.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
gi|445693979|gb|ELZ46117.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
Length = 236
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 35 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 94
P++ + AD PVV AS+VAK R + A + + GSGYP DP T
Sbjct: 140 LPAVDVTAAHGADGDDPVVGAASVVAKTVR---DAAMADIDAAYPDYDDLGSGYPSDPAT 196
Query: 95 K----AWLTDHKHIIFGFPSLVRFSWGTC 119
+ A++ DH+ + P R SW TC
Sbjct: 197 RSFLAAYVGDHETL----PDCARTSWSTC 221
>gi|448593311|ref|ZP_21652309.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
gi|445730219|gb|ELZ81809.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
Length = 215
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S++ +AD + +V ASIVAKV RDR + E + + GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPSDQTTRD 177
Query: 97 WLTD--HKHIIFGFPSLVRFSWGTCT 120
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|448610387|ref|ZP_21661133.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
gi|445745011|gb|ELZ96481.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
Length = 215
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ S+ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAETGLSVDVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGAVGSGYPS 171
Query: 91 DPETKAWLTD--HKHIIFGFPSLVRFSWGTCT 120
D T+ +L + +H I P R SW TC
Sbjct: 172 DQTTRDFLREFVREHGI--LPDCARKSWATCA 201
>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
Length = 217
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 41 VVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 99
V+S+ AD YPVVS ASI+AKV RD ++ E +++ N GSGY D T +L
Sbjct: 127 VISRHNADRDYPVVSAASILAKVHRDALIK-----EICDSIGENVGSGYSHDQVTIEFLK 181
Query: 100 DHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ P R SW T ++ D ++
Sbjct: 182 GYYKKNKCMPPFARKSWKTTSAIISDCLQ 210
>gi|401406283|ref|XP_003882591.1| Ribonuclease, related [Neospora caninum Liverpool]
gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
Length = 297
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 83 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 142
FGSGYPGD ET A+L + +FGF VRFSW T + I E E E+V
Sbjct: 195 TFGSGYPGDAETVAFLNKNCDPVFGFDGFVRFSWSTA----RLIFEKRGVPVEWYEEVEE 250
Query: 143 RRSGKRQLKLSDI-GFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
+G + K S I F ++KR E + G R F KL+ L+
Sbjct: 251 EAAGASKAKQSRITNFFAAKR---EATAGGIDRAPFFVKSKLQLLSEL 295
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 42 VSKKADSLYPVVSGASIVAKVTRDRTLRGW 71
V++KADSLYPVVS ASI+AKV+RDR L W
Sbjct: 81 VAEKADSLYPVVSAASILAKVSRDRMLVQW 110
>gi|448339615|ref|ZP_21528633.1| ribonuclease HII [Natrinema pallidum DSM 3751]
gi|445619604|gb|ELY73131.1| ribonuclease HII [Natrinema pallidum DSM 3751]
Length = 222
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ S++ V + AD P+V ASI+AKV RD + E
Sbjct: 116 DADRFARRVADAC-SLEVDVDARHGADDDAPLVGAASIIAKVDRDAHIAALADE------ 168
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYPGD T+ +L + P R SW TC
Sbjct: 169 YGPIGSGYPGDATTREFLASYVDEHGSLPPFARESWSTC 207
>gi|448547399|ref|ZP_21626877.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
gi|445716410|gb|ELZ68154.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
Length = 215
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ ++ +AD + +V ASIVAKV RDR + E + + GSGYP
Sbjct: 118 LAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVGSGYPS 171
Query: 91 DPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ +H I P R SW TC
Sbjct: 172 DGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
gi|74579762|sp|Q74MH3.1|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
Length = 200
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I + +D+ E Y+ ++ + +++K P+V+ ASIVAKV RDR +
Sbjct: 93 ISHIVIDSPERPENYKLRILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI---- 148
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
E+ E +FGSGYP D T+ L + I+ + +R W
Sbjct: 149 -EKIKEQTGIDFGSGYPSDKRTRKALEQYYRILKPY---IRKKW 188
>gi|448584728|ref|ZP_21647471.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
gi|445727582|gb|ELZ79192.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
Length = 215
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 31 LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPG 90
L++ ++ +AD + +V ASIVAKV RDR + EE A + + GSGYP
Sbjct: 118 LAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRV-----EEIAAS-YGEVGSGYPS 171
Query: 91 DPETKAWLTDH--KHIIFGFPSLVRFSWGTCT 120
D T+ +L ++ +H I P R SW TC
Sbjct: 172 DGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|389847511|ref|YP_006349750.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|448617289|ref|ZP_21665944.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|388244817|gb|AFK19763.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|445748638|gb|EMA00085.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
Length = 215
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKA 96
S++ +AD + +V ASIVAKV RDR + I +E E GSGYP D T+
Sbjct: 124 SVEVHAQHRADDEHAIVGAASIVAKVERDRRV-AAIADEYGE-----VGSGYPSDQTTRD 177
Query: 97 WLTD--HKHIIFGFPSLVRFSWGTCT 120
+L + +H I P R SW TC
Sbjct: 178 FLREFVREHGI--LPDCARKSWSTCA 201
>gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum]
Length = 665
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 16 VYLDTV-GDAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
V +D++ +++K+ L QR+ +V + KAD Y + ASIVAKVTRD+ +
Sbjct: 386 VEIDSIESNSQKFSYPLRQRYAGFANIVCEIKADMTYTSTAAASIVAKVTRDKYI----- 440
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTCTS 121
E + G GYP D T +++ ++ F P VR SW T +S
Sbjct: 441 ENLQSQVGEPIGCGYPSDETTLSFIDRFYRANAFDHPE-VRQSWKTISS 488
>gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514]
gi|189043645|sp|A4WHQ7.1|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514]
Length = 198
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 26 KYQAKLSQRFPS------------------IKFVVSKKADSLY-----PVVSGASIVAKV 62
KY AKL + P+ + F+ ++ SL+ P V+ ASIVAKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 121
RDR + E +FGSGYP D +T+ WL + P VR+SW T
Sbjct: 147 VRDRLV------EMLRKEVGDFGSGYPSDRKTREWLRGGR-----IPHECVRWSWETVGK 195
Query: 122 HFK 124
FK
Sbjct: 196 LFK 198
>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
gi|73917829|sp|Q6KZK4.1|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
Length = 199
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
++Y+D E ++ + + + AD +VS ASI+AKV RD +
Sbjct: 93 KIYIDCFDVNESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------ 146
Query: 75 ETAENMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E ++++ +FGSGYP DP+T +L +H +I ++VR W T +K++V+
Sbjct: 147 EKLKSIYGDFGSGYPSDPKTLRFLEHSIINHDNI----DNIVRKEWKT----YKNLVQ 196
>gi|448566780|ref|ZP_21637035.1| ribonuclease HII [Haloferax prahovense DSM 18310]
gi|445713369|gb|ELZ65146.1| ribonuclease HII [Haloferax prahovense DSM 18310]
Length = 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--K 102
+AD + +V ASIVAKV RDR + EE A + GSGYP D T+ +L ++ +
Sbjct: 132 RADDEHAIVGAASIVAKVERDRRV-----EEIA-AAYGEVGSGYPSDGTTRKFLREYVRE 185
Query: 103 HIIFGFPSLVRFSWGTCT 120
H I P R SW TC
Sbjct: 186 HGI--LPDCARKSWSTCA 201
>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
gi|189043673|sp|A1RYM0.1|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
Length = 213
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
++ V AD Y +V ASIVAK TRD + + + +FGSGYP DP T
Sbjct: 134 VRIVAENGADEKYTIVGAASIVAKETRDEIINAL------KKTYGDFGSGYPSDPRTLRF 187
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGT 118
+ W+ H P + R W T
Sbjct: 188 AEEWVRKHGE----PPPIARKEWAT 208
>gi|448299120|ref|ZP_21489133.1| ribonuclease HII [Natronorubrum tibetense GA33]
gi|445588654|gb|ELY42896.1| ribonuclease HII [Natronorubrum tibetense GA33]
Length = 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK----------ADSLYPVVSGASIVAKVTRDRTLRGWI 72
DA+++ ++SQ ++ + + AD +V ASIVAKV RD + I
Sbjct: 116 DADRFARRVSQACSAVSSLEAPTDALEIDARHGADDDSKIVGAASIVAKVERDAHV-AAI 174
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
EE + GSGYP DP T+ +L + P R SW TC
Sbjct: 175 AEE-----YGPVGSGYPSDPNTREFLETYVDEHATLPPFARESWSTC 216
>gi|336255000|ref|YP_004598107.1| ribonuclease HII [Halopiger xanaduensis SH-6]
gi|335338989|gb|AEH38228.1| ribonuclease HII [Halopiger xanaduensis SH-6]
Length = 233
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD +V ASIVAKV RD + I EE + N GSGYP DP T+ +L +
Sbjct: 151 ADDDSTLVGAASIVAKVERDAHIEA-IGEE-----YGNVGSGYPSDPTTRDFLESYVDEH 204
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 205 GELPPFARESWSTC 218
>gi|379005051|ref|YP_005260723.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
gi|375160504|gb|AFA40116.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
Length = 198
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 26 KYQAKLSQRFPS------------------IKFVVSKKADSLY-----PVVSGASIVAKV 62
KY AKL + P+ + F+ ++ SL+ P V+ ASIVAKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 121
RDR + E +FGSGYP D +T+ WL + P VR+SW T
Sbjct: 147 VRDRLV------EMLRKEVGDFGSGYPSDRKTREWLRAGR-----IPHECVRWSWETVGK 195
Query: 122 HFK 124
FK
Sbjct: 196 LFK 198
>gi|448327673|ref|ZP_21516995.1| ribonuclease HII [Natrinema versiforme JCM 10478]
gi|445617302|gb|ELY70900.1| ribonuclease HII [Natrinema versiforme JCM 10478]
Length = 223
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80
DA+++ +++ + V + AD +V ASI+AKV RD + + E
Sbjct: 116 DADRFARRVADACSLERLAVDARHGADDDSLLVGAASIIAKVERDAHMAAFADE------ 169
Query: 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ GSGYPGD T+ +L + P R SW TC D
Sbjct: 170 YGPVGSGYPGDSTTREFLASYVDEHRELPPFARASWSTCEDALAD 214
>gi|374632053|ref|ZP_09704427.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
gi|373525883|gb|EHP70663.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
Length = 212
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD + S ASIVAKV RDR I E E + +FGSGYP DP+T+ W+
Sbjct: 128 ADENFLEASAASIVAKVVRDR-----IVLELREQ-YGDFGSGYPSDPKTRKWVERLAKEG 181
Query: 106 FGFPSLVRFSW 116
P+++R +W
Sbjct: 182 KPPPTIIRRTW 192
>gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
gi|109626729|emb|CAJ53196.1| ribonuclease H, type 2 [Haloquadratum walsbyi DSM 16790]
Length = 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNFGSGYPGDPETKAWLTDHKH 103
AD P+V+ ASI+AK RD + +E T GSGYP D +T+A+L +
Sbjct: 146 ADEDDPLVAAASIIAKARRDEQITALAKEYETTGP-----IGSGYPSDQKTRAFLRRYIR 200
Query: 104 IIFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
P+ R SW T DIVE + +S
Sbjct: 201 TNGKVPACARRSWAT----VDDIVESIEQS 226
>gi|409729992|ref|ZP_11271603.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|448722297|ref|ZP_21704835.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|445790008|gb|EMA40681.1| ribonuclease HII [Halococcus hamelinensis 100A6]
Length = 212
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
++ AD + +V ASIVAKV RD + E + H GSGYP DP T+ +
Sbjct: 122 VEVTAEHGADENHDLVGAASIVAKVARDSHI------ERLADEHGPLGSGYPSDPNTREF 175
Query: 98 LTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
L ++ P R SW T +D+++ +S
Sbjct: 176 LREYVREHGELPPFARASWKTS----RDVLDAAAQS 207
>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
gi|74561281|sp|Q8TYV5.1|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
Length = 210
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+V LD G+ + + P I + ++AD+ Y VVS ASIVAK RD WI
Sbjct: 95 EVILDKPGNYSPERLRRELDLPEGINLIAEERADAKYEVVSAASIVAKTYRD-----WIV 149
Query: 74 EETAENMHRNFGSGYPGDPET 94
E + GSGYP DP T
Sbjct: 150 -RLLELEYGEVGSGYPSDPRT 169
>gi|448733907|ref|ZP_21716147.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
gi|445801893|gb|EMA52208.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
Length = 223
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
++ AD + +V AS+VAKV RD + E H GSGYP DP T+ +
Sbjct: 133 VEITAEHGADEEHALVGAASVVAKVARDAHIADLADE------HGPIGSGYPSDPTTREF 186
Query: 98 LTDHKHIIFGFPSLVRFSWGT 118
L ++ P R SW T
Sbjct: 187 LAEYVREHGDLPPFARRSWKT 207
>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
Length = 203
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+D+ + ++L R + V KA+ + P V+ ASIVAKV RDR + +
Sbjct: 100 YVDSPDPKPERFSELLSRMSGRRVVAMNKAERV-PQVAAASIVAKVVRDRLV------DM 152
Query: 77 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ +FGSGYP D +T + L K + +R SWGT
Sbjct: 153 LRSEMGDFGSGYPSDSKTISALRSGKIAV----ECIRHSWGT 190
>gi|393795311|ref|ZP_10378675.1| ribonuclease HII [Candidatus Nitrosoarchaeum limnia BG20]
Length = 205
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
ADS + VVS ASI+AKVTRDR E + + GSGYP D +T ++ +
Sbjct: 133 ADSRFIVVSAASIIAKVTRDR-------EIMKLRKNHDLGSGYPSDSKTIDFVKLYYKTN 185
Query: 106 FGFPSLVRFSW 116
P VR SW
Sbjct: 186 QILPVFVRKSW 196
>gi|448738065|ref|ZP_21720096.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
gi|445802649|gb|EMA52953.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
Length = 208
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
++ AD + V ASIVAKV RD + E H GSGYPGD T+ +
Sbjct: 118 VELAAEHGADESHDHVGAASIVAKVARDEHVADLAAE------HGAIGSGYPGDSSTRKF 171
Query: 98 LTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
L ++ P R SW T +D++E +S
Sbjct: 172 LREYVREHGDLPPFARESWKTS----RDVLEAADQS 203
>gi|424814493|ref|ZP_18239671.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
gi|339758109|gb|EGQ43366.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
Length = 219
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 23 DAEKYQAKLSQRFPS----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 78
DAE++ K+ + S ++F AD +PVVS ASIVAK R E E
Sbjct: 109 DAEEFIGKIKKSMNSDNTDMEFKAEHGADDSFPVVSAASIVAKSAR---------ESHVE 159
Query: 79 NMHRNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+H +G SGYP D T +L + P R SW T
Sbjct: 160 GLHSKYGYDFASGYPHDKPTITFLERYLDQEGDLPPETRRSWSTA 204
>gi|448308426|ref|ZP_21498303.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
gi|445593714|gb|ELY47883.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
Length = 227
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD +V ASI+AKV RD + E + GSGYP DP T+ +L +
Sbjct: 145 ADDDSTLVGAASIIAKVERDAHVAALADE------YGPVGSGYPSDPTTQTFLESYVDEH 198
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 199 GDLPPCARASWSTC 212
>gi|448304708|ref|ZP_21494644.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
gi|445590089|gb|ELY44310.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
Length = 219
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
AD +V ASI+AKV RD + E + GSGYP DP T+ +L +
Sbjct: 137 ADDDSTLVGAASIIAKVERDAHVAALADE------YGPVGSGYPSDPTTQTFLESYVDEH 190
Query: 106 FGFPSLVRFSWGTC 119
P R SW TC
Sbjct: 191 GDLPPCARASWSTC 204
>gi|385804569|ref|YP_005840969.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
gi|339730061|emb|CCC41372.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
Length = 231
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFE-ETAENMHRNFGSGYPGDPETKAWLTDHKHI 104
AD P+V+ AS++AK RD + E ET + GSGYP D +T+A+L +
Sbjct: 146 ADEDDPLVAAASVIAKARRDEQITALAKEYETIGPI----GSGYPSDQKTRAFLRRYIRT 201
Query: 105 IFGFPSLVRFSWGTCTSHFKDIVEVLWES 133
P+ R SW T DIVE + +S
Sbjct: 202 NGKVPACARRSWAT----VDDIVESIEQS 226
>gi|355571207|ref|ZP_09042459.1| ribonuclease HII [Methanolinea tarda NOBI-1]
gi|354825595|gb|EHF09817.1| ribonuclease HII [Methanolinea tarda NOBI-1]
Length = 211
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPETK 95
+ V AD +P VS ASIVAKV RD + +H +FGSGYP DP T
Sbjct: 121 RVVSCHHADRQHPAVSAASIVAKVERDSMI---------HRLHDEWGSFGSGYPSDPVTI 171
Query: 96 AWLTDHKHIIFGFPSLVRFSWGT 118
+L + P + R SW T
Sbjct: 172 RFLERYLEEKGEIPPIARKSWET 194
>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
gi|189043576|sp|A0RV25.1|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
Length = 205
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHI 104
+AD + +VS ASI+AKV RDR++ E H + GSGYP D T ++ + +
Sbjct: 131 RADDRFVIVSAASILAKVARDRSI------ERLRKSH-DVGSGYPSDRRTVGFVRGYYNK 183
Query: 105 IFGFPSLVRFSW 116
P VR SW
Sbjct: 184 NGAMPPFVRRSW 195
>gi|329766418|ref|ZP_08257962.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137017|gb|EGG41309.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 116
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHII 105
ADS + VVS ASI+AKV RDR E + + GSGYP D +T ++ +
Sbjct: 44 ADSRFIVVSAASIIAKVVRDR-------EIMKLRKNHDLGSGYPSDSKTIDFVKLYYKTN 96
Query: 106 FGFPSLVRFSW 116
P VR SW
Sbjct: 97 HILPVFVRKSW 107
>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
gi|74564756|sp|Q8ZXL6.1|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
Length = 212
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 82
+ ++Y++ L F + K V++ P V+ ASIVAKV RDR ++ + +E
Sbjct: 106 NPKRYESGLV--FATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQ-LLKKEVG----- 157
Query: 83 NFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF 123
+FGSGYP DP T L + + PS +R+ W T
Sbjct: 158 DFGSGYPSDPRTLQRLREGR-----MPSECIRWQWKTVGGRI 194
>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
Length = 306
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 91 DPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
DP TK +L+ H +FGFPSLVRFSW T +D
Sbjct: 219 DPATKKFLSAHVDNVFGFPSLVRFSWSTAEKLLED 253
>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
Length = 142
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDH 101
W F E +++ ++GSGYP DP+TKAWL H
Sbjct: 110 WQFVENLQDLDSDYGSGYPNDPKTKAWLRKH 140
>gi|452208016|ref|YP_007488138.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
gi|452084116|emb|CCQ37449.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
Length = 210
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPSIKFV-VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ A++ + + + AD+ +V AS++AK R+R + + +
Sbjct: 104 DAGRFAARVEDGLGADATIDAAHGADASDSLVGAASVLAKSARERHV------ASLADRF 157
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP T+++L + FP R SW TC
Sbjct: 158 GEVGSGYPSDPTTRSFLRRYVEEHGAFPPPTRRSWSTC 195
>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
gi|39932439|sp|Q8XZH7.1|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
solanacearum GMI1000]
Length = 236
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 34 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGT 187
>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
Length = 236
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 34 RFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H +G+
Sbjct: 131 RCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGT 187
>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
Length = 211
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 52 VVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG-FPS 110
VV+ ASI+AK RD + E + + +FGSGY D +T+ WL + I G P
Sbjct: 136 VVAAASIIAKCLRDEII------EELKREYGDFGSGYASDEKTRRWLEE--QIKRGKIPE 187
Query: 111 LVRFSWGT 118
+VR W T
Sbjct: 188 IVRKRWKT 195
>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 218
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 23 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 82
+ EK + LS++ K + AD + VS ASI+AK R+R + E+ + +
Sbjct: 111 NTEKIRLYLSKKIKDKKIIAENYADKNHIEVSAASIIAKANREREV-----EKIKKELGY 165
Query: 83 NFGSGYPGDPETKAW---LTDHKHIIF-GFPSLVRFSWGTC 119
+FGSGYP DP+T + +T+++ I + VR +W T
Sbjct: 166 DFGSGYPSDPKTIQFIKIITENERINQEPYKKFVRKTWNTV 206
>gi|374724762|gb|EHR76842.1| ribonuclease HII [uncultured marine group II euryarchaeote]
Length = 242
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT----- 99
KAD+ + +V ASI+AKV RD I E + GSGYP DP TKA L
Sbjct: 146 KADTNHAIVGMASILAKVRRDE-----IIEALKVEIGAPIGSGYPSDPNTKAALPFLLSG 200
Query: 100 DHKHIIFGFPSLVRFSWGTC 119
D H +R+SW T
Sbjct: 201 DTPH------EALRWSWKTV 214
>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
gi|189043646|sp|A1RU36.1|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
Length = 195
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 37 SIKFVVSKKADSLY-----PVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 91
++ F+ ++ +L+ P V+ ASIVAKV RDR + + + +FGSGYP D
Sbjct: 113 ALSFITGRRVVALHGGESVPQVAAASIVAKVIRDRLI------DILKREIGDFGSGYPSD 166
Query: 92 PETKAWLTDHKHIIFGFPSLVRFSWGT 118
+T WL K + VR SW T
Sbjct: 167 VKTIEWLRLGKIPV----ECVRRSWRT 189
>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
Length = 589
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 14 FQVYLDTV-GDAEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRG 70
+++ LD++ + K+ FP+ + V +ADS Y ASI+AKV RDR +
Sbjct: 398 YKIQLDSLESNTGKFSLPFRDAFPAPEHTVICENQADSKYVSTGAASIIAKVERDRAIAA 457
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
++++ G GYP D T ++ + VR SW T T+
Sbjct: 458 -----LEKSVNTPVGCGYPSDATTLTFIESYYQRNGNDHPDVRLSWKTLTN 503
>gi|421897361|ref|ZP_16327729.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
Length = 236
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
Length = 242
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 136 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 193
>gi|421888303|ref|ZP_16319403.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
gi|378966342|emb|CCF96151.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
Length = 236
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|344169900|emb|CCA82269.1| ribonuclease HII (RNase HII) [blood disease bacterium R229]
Length = 236
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|386333599|ref|YP_006029769.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
gi|334196048|gb|AEG69233.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
Length = 236
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
Length = 236
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|344171454|emb|CCA84066.1| ribonuclease HII (RNase HII) [Ralstonia syzygii R24]
Length = 236
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGT 187
>gi|300704217|ref|YP_003745820.1| ribonuclease HII [Ralstonia solanacearum CFBP2957]
gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
Length = 236
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 86
R P + F V K D+L P +S ASI+AKVTRDR L F ++H +G+
Sbjct: 130 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGYGT 187
>gi|408406045|ref|YP_006864029.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366641|gb|AFU60371.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 225
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 70
+VY+D + ++Y+ + Q P + + AD VVS ASI+AK+TRD ++
Sbjct: 111 EVYVDCCDINPDRYKDYIGQHLKCSPKVHSI--HHADVTNVVVSAASIIAKITRDEEIK- 167
Query: 71 WIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+ +R GSGYP D T ++ + P R SW
Sbjct: 168 -----RIRSKYRGIGSGYPSDDRTMRFIRRYVAKNGSAPEFARKSW 208
>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
gi|238691815|sp|B2UBB5.1|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
Length = 232
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 89
R P + F V K D+L P +S ASI+AKVTRDR L E + G G P
Sbjct: 129 NRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGTP 187
>gi|339499659|ref|YP_004697694.1| ribonuclease H [Spirochaeta caldaria DSM 7334]
gi|338834008|gb|AEJ19186.1| Ribonuclease H [Spirochaeta caldaria DSM 7334]
Length = 199
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFGSGYP 89
KAD+L P V ASI+AK RDR + GWI+ E H+ GYP
Sbjct: 124 KADALVPEVMAASILAKTARDRMMERYGWIYPEYGYEQHK----GYP 166
>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|404377816|ref|ZP_10982916.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|348612883|gb|EGY62490.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
Length = 232
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 33 QRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 89
R P + F V K D+L P +S ASI+AKVTRDR L E + G G P
Sbjct: 129 NRCPQVAFAVEAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGTP 187
>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
gi|74568991|sp|Q9HNR3.1|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189043604|sp|B0R6T4.1|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
gi|167727665|emb|CAP14453.1| ribonuclease H, type 2 [Halobacterium salinarum R1]
Length = 212
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 17 YLDTVGDA--EKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
Y+D GD +++ +++ R + + AD Y +V+ ASIVAKV RD +
Sbjct: 98 YVDA-GDVNEQRFGRRVANRVAADVAVTAEHGADDEYDLVAAASIVAKVARDAHV----- 151
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ A + GSGYP D T+ +L + P R SW T
Sbjct: 152 DALAAAFDADIGSGYPSDSTTREFLAAYVREHGELPECARASWQT 196
>gi|424819593|ref|ZP_18244670.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 218
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 6 GKNLHFFIF-------------QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKK-ADSLYP 51
GKNL++ +V +D+ K + Q K ++++ AD +
Sbjct: 80 GKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLIKRKIIIAENYADRNHV 139
Query: 52 VVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT----DHKHIIFG 107
VS ASI+AK R+R + ++ + +FGSGYP DP+T +L + K
Sbjct: 140 EVSAASILAKSEREREV-----DKIKKIFGYDFGSGYPSDPKTVEFLKIIKENGKIDESP 194
Query: 108 FPSLVRFSWGTCTS 121
+ L+R SW T S
Sbjct: 195 YKELIRKSWSTLQS 208
>gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147]
gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786]
Length = 214
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPET 94
SI+ V D+L P +S ASI+AKVTRDR L +F N+H +G+ P
Sbjct: 132 SIRSVAIVGGDALVPSISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGT-----PRH 186
Query: 95 KAWLTDH 101
A L +H
Sbjct: 187 LAALREH 193
>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
Length = 207
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
E+Y + LS + K +V+ P V+ ASIVAKV RDR + + + +F
Sbjct: 122 ERYGSALSMA--TGKRIVALNKGERVPQVAAASIVAKVVRDRLI------DLLKREVGDF 173
Query: 85 GSGYPGDPET 94
GSGYP DP T
Sbjct: 174 GSGYPSDPRT 183
>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
Length = 281
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRF----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
I + Y++ +G E L + +KF+V ++ + A IV+ R+ L
Sbjct: 133 IIECYINPIGFKENLNEVLKKGLGLGNNDLKFIVG-----MHQTIIAAQIVSLQERNTRL 187
Query: 69 RGWIFEETAENMHRN--FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ ++++ + GSGYP D T+ +L+ +F +P +RF+W T ++ K
Sbjct: 188 L-----QIQQDIYPSGQMGSGYPSDALTREFLSKVSIPVFIYPQDIRFAWQTVSASLKQ 241
>gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 102
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 85
+IK +V KADS P VS ASI+AKV+RDR +R + I+ + H+ +G
Sbjct: 23 NIKTIV--KADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYG 71
>gi|388471367|ref|ZP_10145576.1| ornithine cyclodeaminase [Pseudomonas synxantha BG33R]
gi|388008064|gb|EIK69330.1| ornithine cyclodeaminase [Pseudomonas synxantha BG33R]
Length = 348
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 26 KYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-NMH 81
K AKL+ + FP+IK ++ ADS+ V GA IV VT D+ + +E E MH
Sbjct: 165 KATAKLAANLKAFPAIKVIL---ADSVAEAVKGADIVTTVTADKAYATILTDEMIEPGMH 221
Query: 82 RN-FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 140
N G PG E + + +I + R V LW+ +
Sbjct: 222 LNAVGGDCPGKTELDRRIVERARVIVEYEPQSRIEGEIQHMPEDSPVTELWQV------I 275
Query: 141 SSRRSGK---RQLKLSD-IGFS 158
+ ++ G+ RQ+ L D +GF+
Sbjct: 276 NGQKPGRENARQITLFDSVGFA 297
>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|424819944|ref|ZP_18244982.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|342326723|gb|EGU23207.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
Length = 189
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 27 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 84
Y +IK +V KADS P VS ASI+AKV+RDR +R + I+ + H+ +
Sbjct: 100 YDGNCDYGVKNIKTIV--KADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGY 157
Query: 85 G 85
G
Sbjct: 158 G 158
>gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington]
gi|383752176|ref|YP_005427276.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|383843012|ref|YP_005423515.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
gi|73917831|sp|Q68XG6.1|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
gi|380758819|gb|AFE54054.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|380759659|gb|AFE54893.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
Length = 193
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
EK + +F ++F+ D+L ++ ASI+AKVTRDR + E H+N+
Sbjct: 107 EKILVDGNMKFSDVRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNY 166
Query: 85 GSG 87
G G
Sbjct: 167 GYG 169
>gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E]
gi|383487047|ref|YP_005404727.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|383487623|ref|YP_005405302.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|383488470|ref|YP_005406148.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|383489312|ref|YP_005406989.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
gi|383499448|ref|YP_005412809.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500287|ref|YP_005413647.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|386082034|ref|YP_005998611.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|7227932|sp|Q9ZDW3.1|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii str. Madrid E]
gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|380757412|gb|AFE52649.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|380757984|gb|AFE53220.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|380760502|gb|AFE49024.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|380761349|gb|AFE49870.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|380762194|gb|AFE50714.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763035|gb|AFE51554.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
Length = 193
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 32 SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 87
+ +F I+F+ D+L ++ ASI+AKVTRDR + E H+N+G G
Sbjct: 114 NMKFSDIRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYG 169
>gi|385805443|ref|YP_005841841.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
gi|383795306|gb|AFH42389.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
Length = 200
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 37 SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF---GSGYPGDPE 93
+I+ +V KKAD + V+ ASIVAKV RDR L E + NF GSGYPGD +
Sbjct: 124 NIEQLVLKKADENFIAVAAASIVAKVQRDRAL---------EQIRNNFGLIGSGYPGDKK 174
Query: 94 TKAWLTDH 101
+ WL H
Sbjct: 175 SVEWLKLH 182
>gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus]
gi|39932315|sp|Q7VRD2.1|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus]
Length = 205
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 85
K DS PV+S ASI+AKVTRD+ + + HRN G
Sbjct: 132 KGDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKG 172
>gi|398347238|ref|ZP_10531941.1| ribonuclease H [Leptospira broomii str. 5399]
Length = 221
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 34 RFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNFGS 86
++P KF+ SK K DS +S ASI+AKVTRDR ++G F H+ +GS
Sbjct: 137 KYPESKFISSKSHYYTKGDSRIVSISAASIIAKVTRDRWMKGIAGKFPGYGFESHKGYGS 196
>gi|348029848|ref|YP_004872534.1| ribonuclease H [Glaciecola nitratireducens FR1064]
gi|347947191|gb|AEP30541.1| ribonuclease H [Glaciecola nitratireducens FR1064]
Length = 213
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG----SGYPGDPETKAWLTD 100
K D+L+P +S ASI+AKVTRD + T N + ++G GYP TKA L
Sbjct: 131 KGDALFPQISAASIIAKVTRDDEMV------TLHNQYPHYGFAAHKGYP----TKAHLAA 180
Query: 101 HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDE 138
+ G S R S+ S V LW+ + DE
Sbjct: 181 LQE--HGPLSCYRQSFKPVQS-----VLALWQGEFQDE 211
>gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
gi|189043667|sp|A6QCJ3.1|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
Length = 188
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 45 KADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAENMHRNFGS 86
KAD P VS ASI+AKVTRDR + I+ E H+ +G+
Sbjct: 114 KADDKVPEVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGT 157
>gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
gi|123491623|sp|Q2GD69.1|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
Length = 195
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 19 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 78
D + +A KY+ +K VVS D +Y + ASIVAKVTRDR + G + T
Sbjct: 107 DIINNAAKYK--------EVKSVVS--GDKIYGEIKAASIVAKVTRDRLMEG--LDLTYP 154
Query: 79 NMHRNFGSGYPGDPE-----TKAWLTDH 101
F GY G E K +TDH
Sbjct: 155 YYRWKFNKGY-GTKEHLEALAKYGVTDH 181
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,934,593
Number of Sequences: 23463169
Number of extensions: 117581166
Number of successful extensions: 269751
Number of sequences better than 100.0: 674
Number of HSP's better than 100.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 268589
Number of HSP's gapped (non-prelim): 713
length of query: 189
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 55
effective length of database: 9,215,130,721
effective search space: 506832189655
effective search space used: 506832189655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)