BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029710
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 270 bits (691), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Query: 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++ + + YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR
Sbjct: 116 DMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRA 175
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIV 127
L+ W+ EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K V
Sbjct: 176 LKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEV 235
Query: 128 EVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 187
EV WE+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT
Sbjct: 236 EVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLT 294
Query: 188 HF 189
F
Sbjct: 295 QF 296
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+W
Sbjct: 196 FVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIW 255
Query: 132 ESDEMDEDVSSRRSGK 147
E E +ED R GK
Sbjct: 256 EDSEAEED--PERPGK 269
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W
Sbjct: 136 VTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQ 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E+ + + ++GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V W
Sbjct: 196 FVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTW 255
Query: 132 ESDEMDED 139
E +ED
Sbjct: 256 EDSAAEED 263
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I +VY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W
Sbjct: 181 IAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS 240
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 132
F E FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E
Sbjct: 241 FPEGLVIKDNEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-E 299
Query: 133 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 189
DE D + + +G + K F + + E I + C+F + R LE + F
Sbjct: 300 FDEPDSE-KPKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 135 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 194
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 131
F E +++ ++GSGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+W
Sbjct: 195 FVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIW 254
Query: 132 E 132
E
Sbjct: 255 E 255
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ QV++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 136 VAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWK 195
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLW 131
F E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V W
Sbjct: 196 FVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKW 255
Query: 132 ESDE 135
E E
Sbjct: 256 EDSE 259
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT 63
R + + ++ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVT
Sbjct: 123 RDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVT 182
Query: 64 RDRTLRGWIF-EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122
RD LR W F E+ + +GSGYPGDP TK +L +FGF SLVR SW T ++
Sbjct: 183 RDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTI 242
Query: 123 F-KDIVEVLWESDEMDEDVSSRR 144
K V WE DE + S+R
Sbjct: 243 VEKRCVPGSWEDDEEEGKSQSKR 265
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 15 QVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
++YLDTVG +KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F
Sbjct: 130 ELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNF 189
Query: 74 E-----ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI-- 126
+ + E + +FGSGYP DP +K WL ++ +FG+P+ +RFSW T + +
Sbjct: 190 DYLNIYDQDEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACF 249
Query: 127 -VEVLWESDEMDEDVSSRRSGKRQL 150
V+ + E+D++ + ++ K++
Sbjct: 250 GVDWVLENDKLKQHFQENQNDKKRF 274
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 11/159 (6%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E
Sbjct: 152 VYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVES 206
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI----VEVL 130
+ GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D + +
Sbjct: 207 LKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIK 266
Query: 131 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 169
WE MD ++ + K QL+L + ++R +++
Sbjct: 267 WEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 9/116 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ +++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 160 VTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL---- 215
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + +GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 216 -EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLE 266
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
+ ++Y+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L
Sbjct: 174 VTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL---- 229
Query: 73 FEETAENMHR--NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHFKDIVEV 129
E A R N+GSGY D T WL + IFG+ +VR+SW T KD++E+
Sbjct: 230 --ECARESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTA----KDLLEL 283
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 126
+ IF E GSGYP DP+TK +L ++ H G P + R SW T + K+I
Sbjct: 178 EEYKEIFGE--------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEI 229
Query: 127 VE 128
E
Sbjct: 230 EE 231
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D VG EK A+LS R ++ + AD YP+VS ASIVAKV RD +R
Sbjct: 109 VYVDAVGSPEKLAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------ 161
Query: 76 TAENMHRNFGSGYPGDPETKAWLT-DHKHIIFGFPSLVRFSWGT 118
++ GSGYP DPET AWL +++ P VR +W T
Sbjct: 162 MLRRLYGVRGSGYPTDPETIAWLAEEYRRNPANPPWFVRRTWST 205
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 178 ------EEYKKTFGEIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D DA ++ + + +R K + KAD+ YPVVS ASI+AKV RD +
Sbjct: 102 IYADAADVDANRFASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP+TK WL ++ FP +VR +W T
Sbjct: 157 -EKLKKQYGDFGSGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 120 ISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI 177
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E + GSGYP DP+TK +L + H G P + R SW T + K+I E
Sbjct: 178 ------EEYKKTFGEIGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 14 FQVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+Y+D +E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRDR
Sbjct: 123 ISIYIDACSSSEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-- 178
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
+ EE E GSGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 179 ---VIEEYKETFGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR +
Sbjct: 102 IYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 157 -EKLKEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 41 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTD 100
+ KAD+ Y +VS ASI+AKVTRDR + E + + FGSGYP DP TK WL +
Sbjct: 129 IAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGEFGSGYPSDPRTKEWLEE 182
Query: 101 HKHIIFGFPSLVRFSWGTC 119
+ FP +VR +W T
Sbjct: 183 YYKQYGDFPPIVRRTWETA 201
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+Y+D+ AE++ + R K V KAD+ Y +VS ASI+AKV RDR +
Sbjct: 102 IYIDSADVKAERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI----- 156
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E + + +FGSGYP DP TK WL + FP +VR +W T
Sbjct: 157 -EKLKAEYGDFGSGYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTA 201
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 21/119 (17%)
Query: 16 VYLDTVG-DAEKYQAKLSQRF----PS----IKFVVSKKADSLYPVVSGASIVAKVTRDR 66
VY D AE++ L +++ P+ I+ + +AD++YPVVS ASI+AKV RD
Sbjct: 102 VYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE 161
Query: 67 TLRGWIFEETAENMHRNFGSGYPGDPETKA----WLTDHKHIIFGFPSLVRFSWGTCTS 121
+ EE + +FGSGYP DP+TKA W +H FP +VR SW T +
Sbjct: 162 -----LIEEIKKEWSVDFGSGYPSDPKTKAFLLKWGKEHDG---KFPEIVRQSWQTVEN 212
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + + + ++ +
Sbjct: 127 DKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY------KKIYGDI 180
Query: 85 GSGYPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTC 119
GSGYP DP+T +L D+ KH P + R W TC
Sbjct: 181 GSGYPSDPKTIKFLEDYFKKH--KKLPDIARTHWKTC 215
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 17 YLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
YLD +AE++ + + ++ V + +ADS YP+VS ASI+AKV RD +R
Sbjct: 109 YLDACDVNAERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR----- 163
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 128
E +E M + GSGYP DP T ++L ++ P R SW T + D ++
Sbjct: 164 EISEKMGEDVGSGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 16 VYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74
V +D GD + + L++ +V +KADS YPVVS ASIVAKV RD L
Sbjct: 104 VVVDKYGDVQGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------ 157
Query: 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFG---FPSLVRFSWGTC 119
+ M+ GSGYP DPET+ W+ + +F P ++R++W T
Sbjct: 158 QVLRRMYGVRGSGYPSDPETREWVRE----VFARGEAPRVIRYTWSTV 201
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 15 QVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 69
++++D +E+ ++AKL + ++ + KAD Y +VS ASI+AKVTRD +
Sbjct: 126 KIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNIIE 183
Query: 70 GWIFEETAENMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFKD 125
+ E + GSGYPGDP+TK +L +HK + P + R SW T K+
Sbjct: 184 SYKEE------FGDIGSGYPGDPKTKEFLKRFVKEHKKL----PKIARGSWATSKKLLKE 233
Query: 126 IVE 128
E
Sbjct: 234 FEE 236
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
IK V +AD++YPVVS ASI+AKV RD + EE +FGSGYP DP+T+ +
Sbjct: 133 IKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKREWCIDFGSGYPSDPKTRGF 187
Query: 98 LTD-HKHIIFGFPSLVRFSWGT 118
L K FP +VR SW T
Sbjct: 188 LLKWGKEHGGDFPDIVRQSWQT 209
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
I+ + +AD+ YPVVS ASI+AKV RD + EE + +FGSGYP DP+TK +
Sbjct: 133 IEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKKEWGLDFGSGYPSDPKTKEF 187
Query: 98 LTD-HKHIIFGFPSLVRFSWGTC 119
L + K FP +VR SW T
Sbjct: 188 LLNWGKEHSGEFPEIVRQSWQTV 210
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 14 FQVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 67
++Y+D EK + ++ + +IK + KAD Y +VS ASI+AKV RDR
Sbjct: 136 IEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRK 195
Query: 68 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI 126
+ + + ++ GSGYP D T+ +L ++ P + R SW T K I
Sbjct: 196 IEEY------KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKLLKKI 248
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 41 VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 99
V+SK AD L+PVVS ASI+AKV RD + E+ +M + GSGYP DP+TK +L
Sbjct: 134 VISKHGADDLFPVVSAASILAKVRRDE-----LIEKIKVDMGVDIGSGYPSDPKTKKFLE 188
Query: 100 DHKHIIFGFPSLVRFSWGTC 119
+ FP +VR SW T
Sbjct: 189 NWYRENSSFPDIVRHSWKTA 208
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 39 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 98
K + KADS Y V+ ASI+AKVTRD+ + E + ++ N GSGYP DP T+ +L
Sbjct: 127 KIIAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIYGNIGSGYPSDPITRKFL 180
Query: 99 TDHKHIIFGFPSLVRFSWGTC 119
++ FP +VR SW T
Sbjct: 181 EEYYKEHGSFPPVVRRSWKTL 201
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 25 EKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83
E+Y+ +S P V KADSL+P VS ASI+AKV RDR I EE ++ + +
Sbjct: 108 ERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-YGD 161
Query: 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
GSGYP DP T +LT + P + R SW T
Sbjct: 162 IGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWET 196
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 17 YLDTVGDAE-KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
Y+D + E ++ K+ + P++ V KAD Y +VS ASI+AKV RD+ L E
Sbjct: 109 YIDCIDVRENRFHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------E 162
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ + GSGYP D T +L K+ FP ++R +W T
Sbjct: 163 IIRQEYGSVGSGYPSDKNTINYLKTIKN--NQFPPIIRKTWKT 203
>sp|A7I9P7|RNH2_METB6 Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3
SV=1
Length = 213
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 46 ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDH--KH 103
ADS YPVVS ASIVAKVTRDR + + GSGYP DPET A+L + +H
Sbjct: 130 ADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSGYPSDPETIAYLNAYIDEH 183
Query: 104 IIFGFPSLVRFSWGTCTS 121
I P + R SW T ++
Sbjct: 184 RI--PPPIARKSWKTVST 199
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ K + + V KADS+YP VS ASIV+KV RDR + ++
Sbjct: 100 VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DK 154
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
AE + FGSGYP DP T +L S+ R W T
Sbjct: 155 IAEK-YGFFGSGYPSDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>sp|A2STJ6|RNH2_METLZ Ribonuclease HII OS=Methanocorpusculum labreanum (strain ATCC 43576
/ DSM 4855 / Z) GN=rnhB PE=3 SV=1
Length = 212
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 16 VYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIF 73
VYLD +A+++ + + S V S+ KAD+ Y VV ASIVAKVTRDR + +
Sbjct: 97 VYLDACDVNAKRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAKVTRDRCIAD-LK 155
Query: 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
EE E GSGYP DP T ++LT++ P R SW T
Sbjct: 156 EEYGE-----IGSGYPSDPATISFLTEYIRTRGEVPLCARRSWQT 195
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 40 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLT 99
+ KAD + VS ASI+AKV RDR + E ++ + GSGYP DP T+ +L
Sbjct: 128 IIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYGEIGSGYPSDPRTRTFLE 181
Query: 100 DHKHIIFGFPSLVRFSWGTC 119
++ FP +VR +W T
Sbjct: 182 EYYRKHGEFPPIVRRTWKTL 201
>sp|A0B796|RNH2_METTP Ribonuclease HII OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=rnhB PE=3 SV=1
Length = 211
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
I + AD + VV+ ASI+AKV RDR++R E A + R GSGYP DP T
Sbjct: 127 IDILAEHNADRKHIVVAAASIIAKVARDRSIRDL---EAA--LGRPLGSGYPSDPATVRF 181
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGTC 119
K W+ ++ + PS VR SW T
Sbjct: 182 LKEWIEENGDL----PSFVRKSWSTA 203
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
VY+D E+ ++ Q + V KAD+++P VS ASIV+KV RD + +
Sbjct: 101 VYIDCYDVIEERAQEIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------D 154
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
+ +FGSGYP DP T +L + +VR W T
Sbjct: 155 RLHDRFGDFGSGYPSDPRTIDFLKKYLKENQDPSEIVRIHWST 197
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 17 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76
Y+D+ + ++ + ++ V KAD YP+V+ ASI+AKV R+R + E
Sbjct: 99 YVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ER 152
Query: 77 AENMHRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ +FGSGY DP T K W+ + PS VR W T ++
Sbjct: 153 LKEKFGDFGSGYASDPRTREVLKEWIASGR-----IPSCVRMRWKTVSN 196
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VGD EK +L + K V KAD L+ S ASI+AKV RD + +
Sbjct: 100 VTVDKVGD-EKPVIELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDN------YID 151
Query: 76 TAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 121
+ ++ +FGSGYP DP T WL P ++R SW S
Sbjct: 152 ELKQVYGDFGSGYPADPRTIKWLKSFYEKNPNPPPIIRRSWKILRS 197
>sp|A5ULV6|RNH2_METS3 Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=rnhB PE=3 SV=1
Length = 207
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 24 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83
AE++Q KL+ + V KAD Y VS ASI+AK RD I E + +
Sbjct: 111 AERFQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQERD----AHIAEINKDYIKMG 165
Query: 84 -FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
GSGYP DP TK +LT+ + P VR SW T
Sbjct: 166 GIGSGYPSDPITKKFLTNFTY--DEMPDFVRKSWATV 200
>sp|Q3IRF6|RNH2_NATPD Ribonuclease HII OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnhB PE=3 SV=1
Length = 212
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAW 97
+ AD +V ASI+AK R+R + E + GSGYP DP TKA+
Sbjct: 122 VSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYGAVGSGYPSDPTTKAF 175
Query: 98 LTDHKHIIFGFPSLVRFSWGTC 119
L + GFP VR SW TC
Sbjct: 176 LREAFEQEGGFPPCVRTSWSTC 197
>sp|Q5UXT4|RNH2_HALMA Ribonuclease HII OS=Haloarcula marismortui (strain ATCC 43049 / DSM
3752 / JCM 8966 / VKM B-1809) GN=rnhB PE=3 SV=1
Length = 211
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 23 DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81
DA ++ +++ + + AD +V ASI+AKV RD + E AE +
Sbjct: 105 DAARFGRRVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--Y 158
Query: 82 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
+ GSGYP DP T+ +L D+ P+ R SW TC
Sbjct: 159 GDVGSGYPSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 16 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 75
V +D VG+A + ++ S + V AD Y VS ASI+AKV RD +
Sbjct: 101 VTVDKVGNASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------N 152
Query: 76 TAENMHRNFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSW 116
+ + +FGSGYPGD +T W+ D + + P ++R SW
Sbjct: 153 ELKKTYGDFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 15 QVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73
+V +D+V E+ + ++ F I+ AD+ Y V+ ASI+AKV RD +
Sbjct: 101 RVIIDSVDVKPERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI----- 155
Query: 74 EETAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119
E+ + +R + GSGYP DP T+ +L + P VR SW T
Sbjct: 156 -ESIQKKNRKLGDIGSGYPSDPRTREFLESFTY--DELPDFVRRSWATV 201
>sp|A8MAH5|RNH2_CALMQ Ribonuclease HII OS=Caldivirga maquilingensis (strain ATCC 700844 /
DSMZ 13496 / JCM 10307 / IC-167) GN=rnhB PE=3 SV=1
Length = 209
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 38 IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET--- 94
++ +V AD P+VS ASIVAKV RD + +ET + +FGSGYP DP T
Sbjct: 126 VELIVLNHADESIPLVSAASIVAKVIRDTIISR--LKET----YGDFGSGYPSDPRTISA 179
Query: 95 -KAWLTDHKHIIFGFPSLVRFSWGT 118
+ W+ + P +VR SW T
Sbjct: 180 LRRWINNGT-----LPPIVRRSWRT 199
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 68
+ F ++ +D VG+ + + ++ + V + AD + S ASI+AKV RD +
Sbjct: 94 VEFKPIRISIDKVGNTKVVEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII 151
Query: 69 RGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
+T ++ + +FGSGYP DP+T W+ + P ++R SW
Sbjct: 152 ------DTLKSKYGDFGSGYPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>sp|B1YB67|RNH2_PYRNV Ribonuclease HII OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM
9278 / V24Sta) GN=rnhB PE=3 SV=1
Length = 198
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 3 DRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKV 62
D + K + VY D + + + F + + VV+ P V+ ASIVAKV
Sbjct: 87 DYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVVAMHKGESVPQVAAASIVAKV 146
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 118
RDR L + +E +FGSGYP DP T+ WL + P VR+SW T
Sbjct: 147 VRDR-LVALLKKEVG-----DFGSGYPSDPRTREWLKWGRL----PPECVRWSWRT 192
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 13 IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 72
I + +D+ E Y+ ++ + +++K P+V+ ASIVAKV RDR +
Sbjct: 93 ISHIVIDSPERPENYKLRILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI---- 148
Query: 73 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116
E+ E +FGSGYP D T+ L + I+ + +R W
Sbjct: 149 -EKIKEQTGIDFGSGYPSDKRTRKALEQYYRILKPY---IRKKW 188
>sp|A4WHQ7|RNH2_PYRAR Ribonuclease HII OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM
11321) GN=rnhB PE=3 SV=1
Length = 198
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 26 KYQAKLSQRFPS------------------IKFVVSKKADSLY-----PVVSGASIVAKV 62
KY AKL + P+ + F+ ++ SL+ P V+ ASIVAKV
Sbjct: 87 KYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKV 146
Query: 63 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTS 121
RDR + E +FGSGYP D +T+ WL + P VR+SW T
Sbjct: 147 VRDRLV------EMLRKEVGDFGSGYPSDRKTREWLRGGR-----IPHECVRWSWETVGK 195
Query: 122 HFK 124
FK
Sbjct: 196 LFK 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,259,326
Number of Sequences: 539616
Number of extensions: 2799450
Number of successful extensions: 7273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 7019
Number of HSP's gapped (non-prelim): 251
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)