Query 029710
Match_columns 189
No_of_seqs 227 out of 1124
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2299 Ribonuclease HI [Repli 100.0 9.6E-55 2.1E-59 376.9 9.0 170 4-187 130-300 (301)
2 cd07181 RNaseH_typeII_eukaryot 100.0 8.7E-36 1.9E-40 252.0 10.1 117 7-123 100-216 (216)
3 PRK14551 rnhB ribonuclease HII 100.0 1E-33 2.2E-38 239.4 9.3 118 2-125 84-203 (212)
4 TIGR00729 ribonuclease H, mamm 100.0 3.6E-32 7.9E-37 228.1 10.2 115 4-124 89-206 (206)
5 cd07180 RNaseH_typeII_Archaea_ 100.0 6.3E-32 1.4E-36 226.1 9.6 116 1-122 86-203 (204)
6 cd06266 RNaseH_typeII Ribonucl 99.9 2.3E-28 5E-33 202.2 7.6 112 1-120 82-193 (193)
7 COG0164 RnhB Ribonuclease HII 99.9 3.1E-27 6.7E-32 199.1 8.7 101 5-125 86-190 (199)
8 PRK00015 rnhB ribonuclease HII 99.9 1.7E-27 3.6E-32 199.7 6.7 95 2-119 99-197 (197)
9 PF01351 RNase_HII: Ribonuclea 99.9 3.6E-27 7.8E-32 195.6 7.9 109 5-119 90-198 (198)
10 cd06590 RNaseH_typeII_bacteria 99.9 1.6E-26 3.4E-31 193.9 6.7 114 2-123 87-208 (208)
11 cd07182 RNaseH_typeII_bacteria 99.9 5E-26 1.1E-30 188.0 6.9 96 2-119 79-178 (179)
12 PRK14550 rnhB ribonuclease HII 99.9 1.5E-25 3.2E-30 189.2 5.7 98 8-124 92-193 (204)
13 PRK13926 ribonuclease HII; Pro 99.9 9.9E-25 2.2E-29 184.5 9.0 93 9-124 108-204 (207)
14 PRK13925 rnhB ribonuclease HII 99.9 1E-24 2.2E-29 183.2 7.1 101 2-123 93-197 (198)
15 PRK00996 ribonuclease HIII; Pr 99.8 1.8E-20 3.9E-25 166.2 6.9 116 1-124 175-300 (304)
16 TIGR00716 rnhC ribonuclease HI 99.5 5.8E-14 1.3E-18 123.8 6.2 98 1-112 169-275 (284)
17 COG1039 RnhC Ribonuclease HIII 98.7 2.1E-08 4.6E-13 89.2 6.9 101 1-109 171-277 (297)
18 cd00223 TOPRIM_TopoIIB_SPO TOP 64.3 4.9 0.00011 32.2 2.0 19 84-103 30-48 (160)
19 PRK04342 DNA topoisomerase VI 55.9 7.8 0.00017 35.8 2.0 19 84-103 220-238 (367)
20 PRK13555 azoreductase; Provisi 47.1 56 0.0012 27.5 5.7 76 25-102 24-116 (208)
21 KOG3495 Mitochondrial F1F0-ATP 47.0 18 0.00039 24.7 2.2 20 53-72 12-31 (50)
22 KOG3286 Selenoprotein T [Gener 45.6 65 0.0014 28.2 5.9 77 9-90 68-147 (226)
23 PLN00060 meiotic recombination 44.9 16 0.00035 34.2 2.3 19 84-103 241-259 (384)
24 PF09010 AsiA: Anti-Sigma Fact 44.1 11 0.00023 28.8 0.8 20 51-70 10-29 (91)
25 TIGR00334 5S_RNA_mat_M5 ribonu 37.2 1.3E+02 0.0028 25.3 6.4 34 15-48 51-84 (174)
26 KOG2795 Catalytic subunit of t 36.0 24 0.00052 33.1 1.9 31 84-116 224-254 (372)
27 PRK05473 hypothetical protein; 34.9 29 0.00062 26.3 1.9 30 43-72 46-77 (86)
28 PRK12360 4-hydroxy-3-methylbut 32.9 98 0.0021 27.8 5.2 53 1-61 41-110 (281)
29 PRK04860 hypothetical protein; 24.5 68 0.0015 26.4 2.6 33 81-117 77-109 (160)
30 PF13542 HTH_Tnp_ISL3: Helix-t 23.5 31 0.00067 21.9 0.3 17 110-126 35-51 (52)
31 PF06042 DUF925: Bacterial pro 22.8 1.1E+02 0.0025 25.3 3.6 46 1-46 27-76 (163)
32 PF06135 DUF965: Bacterial pro 21.9 66 0.0014 23.9 1.8 29 43-71 43-73 (79)
33 cd06366 PBP1_GABAb_receptor Li 21.4 1.5E+02 0.0032 25.5 4.2 50 9-58 36-85 (350)
No 1
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=100.00 E-value=9.6e-55 Score=376.87 Aligned_cols=170 Identities=45% Similarity=0.767 Sum_probs=147.6
Q ss_pred hhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCC
Q 029710 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83 (189)
Q Consensus 4 ~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~ 83 (189)
+.|+++||++++|||||||+|++||++|+++||+++|+|.+||||+||+||||||||||+||+.++.|+++|.+.....+
T Consensus 130 ~~v~~~gvnvteiyVDTVGpp~~Yq~kLek~FP~~k~tV~kKADSlfpiVS~ASI~AKVtRD~alk~w~~~E~~~~~d~~ 209 (301)
T KOG2299|consen 130 DEVLDQGVNVTEIYVDTVGPPAKYQEKLEKRFPGIKFTVTKKADSLFPIVSAASIVAKVTRDRALKEWQFEEKLSDPDED 209 (301)
T ss_pred HHHHHhCCceEEEEEecCCChHHHHHHHHhhCCCeEEEEeecccccccchhhhhhhhhhhhccccceeeeeeecccCCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987778889
Q ss_pred CCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhcc-cceeeecCcccccccccccCCcccccccccccCCCCC
Q 029710 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKR 162 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~~-~~~v~w~~~~~~e~~~~~~~~~~~~~~~s~~~~~~~~ 162 (189)
|||||||||+|++||+.+++++||||++|||||+|++.+|++ +.++.|+++..+.+..+. .++++|+.+.+..
T Consensus 210 ~GSGYP~DP~T~~wLk~~v~~VFGfp~lVRfSW~Ta~t~L~~~~~~~~~e~~~~e~~~~~~------~~~T~~~~~~~~s 283 (301)
T KOG2299|consen 210 LGSGYPSDPETKAWLKENVDSVFGFPSLVRFSWKTAKTLLEDRSEPLKWEESGFELDKTPL------LKFTKKFKPNPAS 283 (301)
T ss_pred ccCCCCCChhHHHHHHhcccccccCccceeeeHHHHHHHHhcccccceeecccccccchHH------HHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999985 999999988644322111 4688888765433
Q ss_pred cchhhhccCccccchhhhccccccc
Q 029710 163 RSEEIESSGKGRCKFLEARKLEQLT 187 (189)
Q Consensus 163 ~~~~~~~~~~~r~~ff~~r~l~~~~ 187 (189)
..+ . |..+| +|+|+++.
T Consensus 284 --~~~----~-r~~~~-~r~l~~~~ 300 (301)
T KOG2299|consen 284 --RSV----P-RSERF-ERHLENWY 300 (301)
T ss_pred --ccc----c-hhHHH-HHhhhhhc
Confidence 111 2 33356 99999874
No 2
>cd07181 RNaseH_typeII_eukaryota_like Eukaryotic Ribonuclease HII; putative role in Okazaki fragment removal during replication. Ribonuclease (RNase) HII endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is a type II RNase H that is active during replication and is believed to play a role in removal
Probab=100.00 E-value=8.7e-36 Score=251.96 Aligned_cols=117 Identities=58% Similarity=0.973 Sum_probs=102.4
Q ss_pred hcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCCCc
Q 029710 7 KNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 86 (189)
Q Consensus 7 l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~Gs 86 (189)
+++++++..||||+++++++|.++|+..+|++++++++|||++||+||||||||||+||++|+.++.........+++||
T Consensus 100 ~~~~~~~~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~kaD~~~~~VAAASIvAKV~RD~~m~~l~~~~~~~~~~~~~gs 179 (216)
T cd07181 100 LDKGVNVTEVYVDTVGPPEKYQAKLKKLFPGIKFTVEKKADSLYPIVSAASIVAKVTRDRALKNWQFDEYLIDPDGDFGS 179 (216)
T ss_pred HcCCCCCCEEEECCCCChhHHHHhhhhcCCCCceEEeeCcccccHHHHHHHHHHHHHHHHHHHHHHhhCccccccCCCce
Confidence 35677899999999999999999998878888899999999999999999999999999999997442211112357899
Q ss_pred cCCCChhHHHHHHhhhccccCCCccccccchhhHHhh
Q 029710 87 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123 (189)
Q Consensus 87 GYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l 123 (189)
||||||.|++||++++++.+|+|++||+||+|++++|
T Consensus 180 GYpsd~~t~~~l~~~~~~~~~~~~~~R~sw~t~~~~l 216 (216)
T cd07181 180 GYPSDPKTKKWLKKNVDPVFGFPSLVRFSWSTAKKLL 216 (216)
T ss_pred ECCCHHHHHHHHHhcCCCcCCCCCceEccccchHhcC
Confidence 9999999999999999999999999999999999875
No 3
>PRK14551 rnhB ribonuclease HII; Provisional
Probab=100.00 E-value=1e-33 Score=239.37 Aligned_cols=118 Identities=28% Similarity=0.419 Sum_probs=102.6
Q ss_pred cchhhhcCCCcccEEEEcCCC-ChHHHHHHHhhhCC-CccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhh
Q 029710 2 HDRSGKNLHFFIFQVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 79 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG-~~~~y~~~L~~~fp-~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~ 79 (189)
|++++.++-..+..||||+.+ ++++|+++|++.++ ++++++++|||++||+||||||||||+||+.|+.+ ..
T Consensus 84 ~~~ai~~l~~~~~~v~iD~~~~~~~~~~~~l~~~~~~~~~~~~~~KaD~~~~~VAAASIlAKv~RD~~m~~l------~~ 157 (212)
T PRK14551 84 HAEALSGVATDGITGLCDAGDVDAGRFARRVADRVALDVSVSAEHGADEEDPLVGAASIVAKVARDAHVAAL------AA 157 (212)
T ss_pred HHHHHHhhccCCCEEEECCCCCchHHHHHhhhhccCCCCceEEEecccchhHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 666775554567889999985 78899999988764 67899999999999999999999999999999996 45
Q ss_pred cCCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhcc
Q 029710 80 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125 (189)
Q Consensus 80 ~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~~ 125 (189)
.||+|||||||||.|++||++..++.+++|++||+||+|++++++.
T Consensus 158 ~y~~~GsGYpsd~~t~~~l~~~~~~~g~~p~~~R~Sw~~~~~~~~~ 203 (212)
T PRK14551 158 EYGDVGSGYPSDPTTREFLREYVREHGELPACARRSWSTCDDVLAA 203 (212)
T ss_pred HCCCCCCcCCCcHHHHHHHHHHHHHhCCCchhhccCcHHHHHHHHH
Confidence 7889999999999999999988877666777999999999999854
No 4
>TIGR00729 ribonuclease H, mammalian HI/archaeal HII subfamily. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterized as RNase HI, large subunit.
Probab=99.97 E-value=3.6e-32 Score=228.07 Aligned_cols=115 Identities=37% Similarity=0.607 Sum_probs=94.4
Q ss_pred hhhhcCCCcccEEEEcCCCChHH-HHHHH--hhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhc
Q 029710 4 RSGKNLHFFIFQVYLDTVGDAEK-YQAKL--SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80 (189)
Q Consensus 4 ~~~l~~gv~~~~V~VDtvG~~~~-y~~~L--~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~ 80 (189)
+++..+..++..||||+++.++. |...+ ...+|++++++++|||++||+||||||||||+||++|+.| .+.
T Consensus 89 ~~i~~l~~~~~~v~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VAAASIlAKv~RD~~m~~l------~~~ 162 (206)
T TIGR00729 89 KAAIILIEKPSEVYVDSVDVNPKRFKREIKIKERIEGIKVIAEHKADAKYPVVSAASIIAKVERDREIESL------KRK 162 (206)
T ss_pred HHHHHHhcCCcEEEEcCCCCcHHHHHHHHHHhccCCCCcEEEEeccccccchhhHHHHHHHHHHHHHHHHH------HHh
Confidence 44444445678999999986544 33333 3357888999999999999999999999999999999996 456
Q ss_pred CCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 81 ~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
|+.|||||||||+|++||+++.++.+++|++||+||+|++++++
T Consensus 163 ~~~~GsGY~sd~~t~~~l~~~~~~~g~~~~~~R~sf~~~~~~~~ 206 (206)
T TIGR00729 163 YGDFGSGYPSDPRTREWLEEYFKSHGELPDIVRRTWKTVRKLLD 206 (206)
T ss_pred cCCCCCcCCCCHHHHHHHHHHHHhhCCCCcccccCcHHHHHhhC
Confidence 88999999999999999999776664577899999999998763
No 5
>cd07180 RNaseH_typeII_Archaea_like Archaeal ribonuclease HII. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair. Some archaeal RNase HII show broad divalent cation specificity. It is proposed that three of the four acidic residues at the active site are involved in metal binding and the fourth one involved in the catalytic process in archaea. Most archaeal genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears tha
Probab=99.97 E-value=6.3e-32 Score=226.13 Aligned_cols=116 Identities=34% Similarity=0.520 Sum_probs=101.6
Q ss_pred CcchhhhcCCCcccEEEEcCC-CChHHHHHHHhhhC-CCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhh
Q 029710 1 MHDRSGKNLHFFIFQVYLDTV-GDAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 78 (189)
Q Consensus 1 ~h~~~~l~~gv~~~~V~VDtv-G~~~~y~~~L~~~f-p~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~ 78 (189)
+|++++.++-.++..|+||++ +++++|.+.|++.+ +++++++++|||++||+||||||||||+||++|+.+ .
T Consensus 86 ~~~~~i~~l~~~~~~iliD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAaASIlAKv~Rd~~m~~l------~ 159 (204)
T cd07180 86 AFAELINRLSDKPDIVYVDACDVNEERFAEELRERLNSGVEVIAEHKADAKYPVVSAASIIAKVERDREIEEL------K 159 (204)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCCHHHHHHHHHHhcCCCCcEEEEeCCcccCchhhHHHHHHHHHHHHHHHHH------H
Confidence 366666555456789999999 57889999998876 357889999999999999999999999999999986 4
Q ss_pred hcCCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHh
Q 029710 79 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 122 (189)
Q Consensus 79 ~~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~ 122 (189)
..|++||+|||+||.|++|++++.++.+|+|++||+||+|++++
T Consensus 160 ~~~~~~g~Gy~sd~~t~~~l~~~~~~~g~~~~~~R~sf~~~~~~ 203 (204)
T cd07180 160 EEYGDFGSGYPSDPRTIKFLRNYYREHGELPPIVRKSWKTVKRL 203 (204)
T ss_pred HhcccCCCcCCCCHHHHHHHHHHHHhhCCCChhheecccchhhc
Confidence 56789999999999999999998887778999999999999764
No 6
>cd06266 RNaseH_typeII Ribonuclease H type II. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genome contained the combination of only RNase HI and HIII. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escheri
Probab=99.95 E-value=2.3e-28 Score=202.24 Aligned_cols=112 Identities=37% Similarity=0.369 Sum_probs=94.3
Q ss_pred CcchhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhc
Q 029710 1 MHDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80 (189)
Q Consensus 1 ~h~~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~ 80 (189)
+|++++.+++.+++.||||++++++.|+. +...++++++++++|||++||+||||||||||+||+.|+.|.... ...
T Consensus 82 ~~~~~i~~l~~~~~~i~iD~~~~~~~~~~-~~~~~~~~~~~~~~kaD~~~~~VaAASIiAKv~rd~~m~~l~~~~--~~~ 158 (193)
T cd06266 82 AMARAILNLGVKPDEVLVDGNGVPEKYFA-LEKKFLPIPVTAIVKGDSKSPSVAAASILAKVTRDRLMEELDEEY--PGY 158 (193)
T ss_pred HHHHHHHhcCCCCCEEEECCCCChhhhhh-hcccCCCCCeEEEeccccccHhHHHHHHHHHHHHHHHHHHHHHHC--CCC
Confidence 47888888888899999999999999988 655567889999999999999999999999999999999974311 002
Q ss_pred CCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhH
Q 029710 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCT 120 (189)
Q Consensus 81 ~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~ 120 (189)
..+.|||||+||.|.+|++.+..+ ++||+||+|++
T Consensus 159 ~~~~gsGy~s~~~~~~~~~~~~~~-----~~~R~sf~~~~ 193 (193)
T cd06266 159 GFAKGKGYPTDPHTEAILKYGPTE-----PIHRRSFKTVK 193 (193)
T ss_pred CCcCCcCcCcHHHHHHHHHhCcCC-----CeeeCCCCCCC
Confidence 237889999999999999976432 99999999863
No 7
>COG0164 RnhB Ribonuclease HII [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.1e-27 Score=199.08 Aligned_cols=101 Identities=33% Similarity=0.384 Sum_probs=80.3
Q ss_pred hhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCC
Q 029710 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84 (189)
Q Consensus 5 ~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~ 84 (189)
++.++..++..||||+.+- ...|. .| .++++|||++|++||||||||||+||++|+.+ ...||+|
T Consensus 86 av~~l~~~~~~vlvD~~~~----~~~l~--~~---~~a~~KgDa~~~~IaAASIvAKV~RDr~m~~l------~~~yp~Y 150 (199)
T COG0164 86 AVAGLSSQPDLVLVDGNDL----PLGLP--QP---AVAIIKGDAKSPSIAAASILAKVTRDRLMEEL------AKEYPEY 150 (199)
T ss_pred HHHhccccCCEEEEeCCCc----cccCC--CC---cceeeccchhhHHHHHHHHHHHHHHHHHHHHH------HhhCcCc
Confidence 4456677779999998761 11121 11 38999999999999999999999999999996 4566655
Q ss_pred ----CccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhcc
Q 029710 85 ----GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125 (189)
Q Consensus 85 ----GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~~ 125 (189)
||||||||.|.+|++.. +.|++||+||+|++++++.
T Consensus 151 ~~~~~~GY~T~~h~~a~~~~~-----~~~~~hR~Sf~~vk~~~~~ 190 (199)
T COG0164 151 GFDKGSGYPTDPHTEALLKKG-----GTPGIHRRSFAPVRRLLGL 190 (199)
T ss_pred CcccCCCCCChHHHHHHHHhC-----CCCceeecccHHHHHhhhh
Confidence 59999999999999854 4555999999999999863
No 8
>PRK00015 rnhB ribonuclease HII; Validated
Probab=99.94 E-value=1.7e-27 Score=199.73 Aligned_cols=95 Identities=26% Similarity=0.303 Sum_probs=78.4
Q ss_pred cchhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcC
Q 029710 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~ 81 (189)
|++++.++ .+++.||||+++.++. .++++++.|||++||+||||||||||+||++|+.| ++.+
T Consensus 99 ~~~~i~~l-~~~~~i~vD~~~~~~~----------~~~~~~~~kaD~~~~~VaAASIvAKv~RD~~m~~l------~~~~ 161 (197)
T PRK00015 99 MRRAVEGL-VKPDYVLVDGNRVPKL----------PIPQEAIVKGDAKSPSIAAASILAKVTRDRLMEEL------DKEY 161 (197)
T ss_pred HHHHHHhc-CCCCEEEECCCCCCCC----------CCCeEEEEcCCcccHHHHHHHHHHHHHHHHHHHHH------HHhC
Confidence 34445444 6788999999986521 13467778999999999999999999999999996 4567
Q ss_pred CCCC----ccCCCChhHHHHHHhhhccccCCCccccccchhh
Q 029710 82 RNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119 (189)
Q Consensus 82 ~~~G----sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~ 119 (189)
++|| |||||||.|.+|++ +|++++||+||+|+
T Consensus 162 ~~yg~~~~sGY~s~~~~~a~~~------~G~~~~~R~Sw~~~ 197 (197)
T PRK00015 162 PGYGFAKHKGYGTKEHLEALAK------YGPTPIHRRSFAPV 197 (197)
T ss_pred cCCCCcCCCcCCCHHHHHHHHH------cCCChhhcCcCcCC
Confidence 8888 99999999999776 49999999999985
No 9
>PF01351 RNase_HII: Ribonuclease HII; InterPro: IPR024567 Ribonuclease HII and HIII are endonucleases that specifically degrade the RNA of RNA-DNA hybrids. Proteins which belong to this family have been found in bacteria, archaea, and eukaryota. The domain represented by this entry is found in ribonucleases HII aand HIII.; PDB: 2ETJ_A 3O3H_A 3O3G_A 3O3F_A 3KIO_A 3P5J_A 1UAX_B 2DFF_A 1IO2_A 2DFH_A ....
Probab=99.94 E-value=3.6e-27 Score=195.58 Aligned_cols=109 Identities=40% Similarity=0.493 Sum_probs=93.7
Q ss_pred hhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCC
Q 029710 5 SGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 84 (189)
Q Consensus 5 ~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~ 84 (189)
++..++..++.|+||+++.+++|..+|++.++ +++++++|||++||+||||||||||+||++|+.+... -.+..+.
T Consensus 90 ~l~~~~~~~~~v~iD~~~~~~~~~~~~~~~~~-~~~~~~~Kad~~~~~VAAASIvAK~~rd~~~~~~~~~---~~~~~~~ 165 (198)
T PF01351_consen 90 ALLKLGVQPDEVLIDQFGSPEKYYNKLEKIFK-IKVVFEPKADSKYPSVAAASIVAKVTRDEMIELLSKY---PGYGFPK 165 (198)
T ss_dssp HHHHTTSEESEEEEEESSSHHHHHHHHHHHST-SEEEEETTHHHCSHHHHHHHHHHHHHHHHHHHHHHHH---HTS-HCC
T ss_pred HHHHhccCCceeecchhhcchhcccchheecC-cceeeecccchhhHHHHHHHHHHHHHHHHHHHHHHhC---cCCCCcc
Confidence 34567889999999999999999999999888 8999999999999999999999999999888774321 0112278
Q ss_pred CccCCCChhHHHHHHhhhccccCCCccccccchhh
Q 029710 85 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119 (189)
Q Consensus 85 GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~ 119 (189)
|||||+||.|++|++....+ ++|++||+||+|+
T Consensus 166 gsGy~s~~~~~~~~~~~~~~--~l~~~~R~sf~tv 198 (198)
T PF01351_consen 166 GSGYPSDPHTRAILKKGGSP--ELPQIHRLSFKTV 198 (198)
T ss_dssp TSSSTTSHHHHHHHHHHHHH--SSHTTB-TTSHHH
T ss_pred CCCCChHHHHHHHHHhCCCC--CCCccccCCCcCC
Confidence 89999999999999999877 8999999999996
No 10
>cd06590 RNaseH_typeII_bacteria_HIII_like bacterial Ribonuclease HIII-like. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gen
Probab=99.93 E-value=1.6e-26 Score=193.87 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=96.4
Q ss_pred cchhhhcC---CCcccEEEEcCCCChHHHHHHHhhhC--CCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhh
Q 029710 2 HDRSGKNL---HFFIFQVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76 (189)
Q Consensus 2 h~~~~l~~---gv~~~~V~VDtvG~~~~y~~~L~~~f--p~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~ 76 (189)
|.+++..+ ++.+..|+||+++.+++|++.|.+.+ +++++++++|||++||+||||||||||+||+.|+.+.
T Consensus 87 ~~~ai~~l~~~~~~~~~v~vD~~~~~~~~~~~l~~~~~~~~~~~~~~~kaD~~~~~VaAASIlAKv~Rd~~m~~l~---- 162 (208)
T cd06590 87 HNKAINNLLEKPKKPVAILIDQFASEKVYKRYLKKEKKIVKEPLIFRTKAESKHLAVAAASILARYAFLEKMEKLS---- 162 (208)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCCCHHHHHHHHHhhccCCCCceEEEecCcccchHHHHHHHHHHHHHHHHHHHHH----
Confidence 44555333 56788999999999999999999887 6789999999999999999999999999999999963
Q ss_pred hhhcCC---CCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhh
Q 029710 77 AENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123 (189)
Q Consensus 77 ~~~~~~---~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l 123 (189)
..|+ ..|+|||+|+.|++||+.+.... +|+++|+||+|+++++
T Consensus 163 --~~yg~~~~~G~g~~~~~~~~~~l~~~g~~~--l~~~~k~~~~t~~~~~ 208 (208)
T cd06590 163 --KQYGMKLPKGASSKVDEQAAEIIKKYGLEE--LKKVAKLHFKNTKKAL 208 (208)
T ss_pred --HHhCCCCCCCCCcHHHHHHHHHHHHhhHhH--HHHHHHHhchhhHhhC
Confidence 3343 67999999999999999875322 7889999999998863
No 11
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=99.92 E-value=5e-26 Score=187.95 Aligned_cols=96 Identities=27% Similarity=0.269 Sum_probs=78.0
Q ss_pred cchhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcC
Q 029710 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~ 81 (189)
|.+++..++.+++.|+||+++.+.. ..++++++|||++||+||||||||||+||++|+.| .+.+
T Consensus 79 ~~~ai~~l~~~~~~v~iD~~~~~~~----------~~~~~~~~KaD~~~~~VaAASIvAKv~RD~~m~~l------~~~~ 142 (179)
T cd07182 79 MRRAVEGLPVKPDYVLVDGNRLPPL----------PIPQEAIVKGDAKSASIAAASILAKVTRDRLMIEL------DKKY 142 (179)
T ss_pred HHHHHHhCCCCCCEEEECCcCCCCC----------CCCeEEEeccccccHHHHHHHHHHHHHHHHHHHHH------HHHC
Confidence 4456666677889999999875321 35678899999999999999999999999999996 4567
Q ss_pred CCCC----ccCCCChhHHHHHHhhhccccCCCccccccchhh
Q 029710 82 RNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 119 (189)
Q Consensus 82 ~~~G----sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~ 119 (189)
|+|| ||||| +.|++.+. .+|+|++||+||+|+
T Consensus 143 ~~yg~~~~~GY~s----~~h~~~i~--~~G~~~~hR~s~~~~ 178 (179)
T cd07182 143 PGYGFAKHKGYGT----KEHLEALK--KYGPTPIHRRSFAPV 178 (179)
T ss_pred cCCCCcCCCCCCc----HHHHHHHH--HhCcCHhhcCCCCCC
Confidence 7776 99995 55666554 689999999999986
No 12
>PRK14550 rnhB ribonuclease HII; Provisional
Probab=99.92 E-value=1.5e-25 Score=189.25 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=78.1
Q ss_pred cCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCCC--
Q 029710 8 NLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG-- 85 (189)
Q Consensus 8 ~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~G-- 85 (189)
.+...+..|+||+...+. +...+| .+.+++|||++||+||||||||||+||++|++| ...||.||
T Consensus 92 ~l~~~~~~vliDg~~~~~-----~~~~~~--~~~~~~KgD~~~~~VAAASIiAKV~RD~~M~~l------~~~~p~Ygf~ 158 (204)
T PRK14550 92 NGCSLANEIKIDGNTAFG-----LNKRYP--NIQTIIKGDETIAQIAMASVLAKAFKDREMLEL------HALFKEYGWD 158 (204)
T ss_pred hCCCCCCEEEECCccCcc-----ccccCc--ceeEEEcccccchhHHHHHHHHHHHHHHHHHHH------HHhCCCCCCc
Confidence 345567789999653221 111123 356778999999999999999999999999986 44566665
Q ss_pred --ccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 86 --SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 86 --sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
|||| |++|++++. .+|++++||+||+|+.++|.
T Consensus 159 ~~kGY~----T~~h~~ai~--~~G~~p~hR~Sf~t~~~~~~ 193 (204)
T PRK14550 159 KNCGYG----TKQHIEAII--KLGATPFHRHSFTLKNRILN 193 (204)
T ss_pred CCCCCC----CHHHHHHHH--HhCcCHHHcCCcCCCCcccC
Confidence 9999 999999976 78999999999999999886
No 13
>PRK13926 ribonuclease HII; Provisional
Probab=99.91 E-value=9.9e-25 Score=184.55 Aligned_cols=93 Identities=27% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCCC---
Q 029710 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG--- 85 (189)
Q Consensus 9 ~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~G--- 85 (189)
+.++++.|++|... +. ..+++++++|||++||+||||||||||+||++|+.| .+.|++||
T Consensus 108 l~~~~~~v~~D~~~--------~~---~~~~~~~~~KgD~~~~~VaAASIvAKv~RD~~m~~l------~~~~~~yg~~~ 170 (207)
T PRK13926 108 LAVAPEALVTDYLR--------LP---TPLPLLAPPKADALSPTVAAASLLAKTERDRLMREL------DARYPGYGFAR 170 (207)
T ss_pred cCCCCCEEEECccc--------CC---CCCCeEEEecCccccHHHHHHHHHHHHHHHHHHHHH------HHhCccCCCcC
Confidence 45678889999421 11 236789999999999999999999999999999996 45778877
Q ss_pred -ccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 86 -SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 86 -sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
|||| |+.+++||+ .||+|++||+||+|+++++.
T Consensus 171 ~kGY~-t~~h~~~l~-----~~G~~~~hR~s~~~~~~~~~ 204 (207)
T PRK13926 171 HKGYG-TPAHREALA-----ALGPSPVHRRSFAPVRRLLT 204 (207)
T ss_pred CCCCC-CHHHHHHHH-----HhCcCHHHcCCcHHHHHhhh
Confidence 9999 777888886 46999999999999998764
No 14
>PRK13925 rnhB ribonuclease HII; Provisional
Probab=99.91 E-value=1e-24 Score=183.25 Aligned_cols=101 Identities=24% Similarity=0.159 Sum_probs=81.9
Q ss_pred cchhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcC
Q 029710 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~ 81 (189)
|++++..+..++..|+||++++.. .++... ...+|||++||+||||||||||+||++|+.| ++.|
T Consensus 93 ~~~~i~~l~~~~~~v~iD~~~~~~--------~~~~~~-~~v~kaD~~~~~VaAASIiAKV~RD~~m~~l------~~~y 157 (198)
T PRK13925 93 MLRALKKLKSPPSLCLVDGNLPLR--------LWPGPQ-RTIVKGDSKSAAIAAASILAKVWRDDLIKRL------AKKY 157 (198)
T ss_pred HHHHHHhcCCCCCEEEECCccccC--------cCCCCc-eeecccccccHHHHHHHHHHHHHHHHHHHHH------HHHC
Confidence 456677777788999999886411 233333 3346999999999999999999999999996 5578
Q ss_pred CCCC----ccCCCChhHHHHHHhhhccccCCCccccccchhhHHhh
Q 029710 82 RNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF 123 (189)
Q Consensus 82 ~~~G----sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l 123 (189)
|+|| +||| |++|++++. .||++++||+||.|+-.++
T Consensus 158 p~y~f~~~kGY~----t~~h~~~i~--~~G~~p~hR~sf~~~~~~~ 197 (198)
T PRK13925 158 PGYGLEKNKGYG----TAQHRQALL--KLGPTPLHRKSFLPKLILI 197 (198)
T ss_pred CCCCcccCCCCC----cHHHHHHHH--HhCcCHHHcCCCcchhhcc
Confidence 8888 9999 899999887 8999999999999875543
No 15
>PRK00996 ribonuclease HIII; Provisional
Probab=99.81 E-value=1.8e-20 Score=166.17 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=92.5
Q ss_pred CcchhhhcC-----CCcccEEEEcCCCChHHHHHHHhhhC--CCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccch
Q 029710 1 MHDRSGKNL-----HFFIFQVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73 (189)
Q Consensus 1 ~h~~~~l~~-----gv~~~~V~VDtvG~~~~y~~~L~~~f--p~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~ 73 (189)
|||+++..+ ++.++.|+||+++.+++|+++|.... +..++++++|||++||+|||||||||+.+++.|+.+
T Consensus 175 ~h~~ai~~l~~k~~~~~p~~iliD~f~~~~~y~~~l~~e~~~~~~~~~~~~KaD~~~~~VAAASIiAR~~~l~~~~~l-- 252 (304)
T PRK00996 175 LHNQAIDNLLQKIAGIQPEKIVIDQFASPEVYQKYLKKEKNKFRDNVTFETKAESKHLAVAAASIIARYAFLENMDKL-- 252 (304)
T ss_pred HHHHHHHHHHhhccCCCCCEEEECCCCCchHHHHHhhhhccCCCCceEEEeccchhhHHHHHHHHHHHHHHHHHHHHh--
Confidence 588888665 78889999999998999999998632 346789999999999999999999955555555542
Q ss_pred hhhhhhcCC---CCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 74 EETAENMHR---NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 74 ~e~~~~~~~---~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
...|+ ..|+|||+|+.+++||+++- .-.+|.++|.+|+|++++++
T Consensus 253 ----~~~yg~~~~kGag~~~d~~a~~~i~~~G--~~~L~~~aK~hfk~~~k~~~ 300 (304)
T PRK00996 253 ----SKEAGMTLPKGAGAKVDKVAAQILKKYG--KEALEKFAKLHFKNTEKAQK 300 (304)
T ss_pred ----CcCCCCCCCCCCCCHHHHHHHHHHHHhC--cchhHHHHHHhchhHHHHHH
Confidence 22233 45899999999999999763 22378899999999988764
No 16
>TIGR00716 rnhC ribonuclease HIII. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other. The only RNase H homolog in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This model describes bacterial RNase III.
Probab=99.47 E-value=5.8e-14 Score=123.81 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=69.6
Q ss_pred CcchhhhcC---CCcccEEEEcCCCChHHHHHHHhhh-CCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhh
Q 029710 1 MHDRSGKNL---HFFIFQVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 76 (189)
Q Consensus 1 ~h~~~~l~~---gv~~~~V~VDtvG~~~~y~~~L~~~-fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~ 76 (189)
|||+++..+ ...+..|+||+++.++.|+..|... ++..++++++|||+ ||+|||||||||..+++.|+.
T Consensus 169 ~h~~aI~~l~~~~~~~~~i~ID~f~~~~~y~~~l~~~~~~~~~~~~~~KaE~-~~aVAAASIiAR~~~l~~l~~------ 241 (284)
T TIGR00716 169 FHKLLIERLLKEECGVSEVVVDQFAPSNPFFNHLKGRDIVGEDVIFETEAER-NLAVAAASIFARYKFLQSLKE------ 241 (284)
T ss_pred HHHHHHHHHhhCcCCCcEEEECCCCCchHhhhhcccccccCCceeeeccccc-chhhhHHHHHHHHHHHHHHHH------
Confidence 588888554 2233579999999888888877542 45678999999998 999999999994444444444
Q ss_pred hhhcCCCCC----ccCCCChhHHHHHHhh-hccccCCCccc
Q 029710 77 AENMHRNFG----SGYPGDPETKAWLTDH-KHIIFGFPSLV 112 (189)
Q Consensus 77 ~~~~~~~~G----sGYPsDp~Tk~~L~~~-~~~~~G~p~~v 112 (189)
+++.|| +||+ |+.+..+. .-..+|+..++
T Consensus 242 ---l~~~yg~~~pkGa~----~~v~~~a~~~i~~~G~~~L~ 275 (284)
T TIGR00716 242 ---LERELGIKLPKGAS----KEVKELAKSLILKKGPSALE 275 (284)
T ss_pred ---hCcccCCcCCCCCC----hHHHHHHHHHHHHhCccHHH
Confidence 445555 9999 78777521 12367887543
No 17
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.1e-08 Score=89.20 Aligned_cols=101 Identities=20% Similarity=0.129 Sum_probs=73.6
Q ss_pred Ccchhh---h-cCCCcccEEEEcCCCChHHHHHHHhhhC--CCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchh
Q 029710 1 MHDRSG---K-NLHFFIFQVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 74 (189)
Q Consensus 1 ~h~~~~---l-~~gv~~~~V~VDtvG~~~~y~~~L~~~f--p~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~ 74 (189)
|||+++ + ..|..++.|.||.+.+.+.|..+|.+.+ +...+....||++.|.+||||||+| ||.+|..++.-
T Consensus 171 lH~~ai~~ll~~~~~~~~~ivIDqFa~~~~~~~yl~k~~~~~~~p~~f~~kaEs~~laVAvASIiA---R~~Fl~~~~~l 247 (297)
T COG1039 171 LHNQAIQNLLPQKGAQPEFIVIDQFASSENYKNYLQKETNKFSEPVLFLTKAESKSLAVAVASIIA---RYAFLQSLKQL 247 (297)
T ss_pred HHHHHHHHHHHhccCCCeEEEeccccchhHHHHHHHhhccCCCCceeeeecccccchhHHHHHHHH---HHHHHHHHHHH
Confidence 699988 3 2789999999999999999999998873 3456888999999999999999999 99999997543
Q ss_pred hhhhhcCCCCCccCCCChhHHHHHHhhhccccCCC
Q 029710 75 ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFP 109 (189)
Q Consensus 75 e~~~~~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p 109 (189)
+....+.-.-|+|-. ..+....+.. .+|+.
T Consensus 248 ~~~~gv~LPkGAg~~----V~~~a~~i~~-k~g~~ 277 (297)
T COG1039 248 SRQYGVQLPKGAGPA----VDQAAAEIIQ-KRGFS 277 (297)
T ss_pred HHHhCCcCCCCCchh----HHHHHHHHHH-HhhHH
Confidence 221111113456644 4444444432 45664
No 18
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=64.26 E-value=4.9 Score=32.17 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=16.4
Q ss_pred CCccCCCChhHHHHHHhhhc
Q 029710 84 FGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~ 103 (189)
+|+||| |..|+.+|+.+..
T Consensus 30 t~kG~P-~~~tr~~l~~L~~ 48 (160)
T cd00223 30 TGKGYP-DRATRRFLRRLHE 48 (160)
T ss_pred EcCCcC-CHHHHHHHHHHHH
Confidence 589999 7889999998764
No 19
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=55.90 E-value=7.8 Score=35.76 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCccCCCChhHHHHHHhhhc
Q 029710 84 FGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~ 103 (189)
+|+||| |..|+.||+.+.+
T Consensus 220 tgkG~P-d~~TR~fl~~L~~ 238 (367)
T PRK04342 220 HLKGQP-ARATRRFIKRLNE 238 (367)
T ss_pred ECCCCC-CHHHHHHHHHHHH
Confidence 689999 8899999998875
No 20
>PRK13555 azoreductase; Provisional
Probab=47.11 E-value=56 Score=27.53 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHH--------H---------HHHhccchhhhhhhcCCCCCcc
Q 029710 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR--------D---------RTLRGWIFEETAENMHRNFGSG 87 (189)
Q Consensus 25 ~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~R--------D---------~~m~~~~~~e~~~~~~~~~GsG 87 (189)
+.|.+.+++..|+..|+..-=++..+|.++++.+-|+-.. + .+++++.....+--.+|.|.-|
T Consensus 24 ~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AD~lvi~~P~~n~~ 103 (208)
T PRK13555 24 ETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATVDQYLNQFLEADKVVFAFPLWNFT 103 (208)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHHHHHHHHHHHcCEEEEEcCccccc
Confidence 5566666666688888888888888999998887775431 1 1222221111111246889999
Q ss_pred CCCChhHHHHHHhhh
Q 029710 88 YPGDPETKAWLTDHK 102 (189)
Q Consensus 88 YPsDp~Tk~~L~~~~ 102 (189)
+| ...|.|+....
T Consensus 104 ~P--a~LK~~iD~v~ 116 (208)
T PRK13555 104 VP--APLITYISYLS 116 (208)
T ss_pred ch--HHHHHHHHHHh
Confidence 99 45677777665
No 21
>KOG3495 consensus Mitochondrial F1F0-ATP synthase, subunit epsilon/ATP15 [Energy production and conversion]
Probab=46.97 E-value=18 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.7
Q ss_pred hhhhHHHhHHHHHHHHhccc
Q 029710 53 VSGASIVAKVTRDRTLRGWI 72 (189)
Q Consensus 53 VsAASIvAKV~RD~~m~~~~ 72 (189)
|.=++|||+++|+.++.++.
T Consensus 12 i~Ys~I~A~vvR~~LK~e~k 31 (50)
T KOG3495|consen 12 IRYSQIAAQVVRQALKTELK 31 (50)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 45579999999999998763
No 22
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=45.61 E-value=65 Score=28.18 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCcccEEEEcCCC---ChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCCCC
Q 029710 9 LHFFIFQVYLDTVG---DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 85 (189)
Q Consensus 9 ~gv~~~~V~VDtvG---~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~~G 85 (189)
.|-.++-.|.=++| -.+.|...|++.||++.|.- +.||-.+-=-++||+.==--|--+...-......+-+|
T Consensus 68 ~~ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~Ieg-----aNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iG 142 (226)
T KOG3286|consen 68 YGPTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEG-----ANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIG 142 (226)
T ss_pred cCCcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeec-----CcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceec
Confidence 34556777777788 35777888999999998774 57888888888888865544443321111234456789
Q ss_pred ccCCC
Q 029710 86 SGYPG 90 (189)
Q Consensus 86 sGYPs 90 (189)
=|||+
T Consensus 143 l~~P~ 147 (226)
T KOG3286|consen 143 LGYPS 147 (226)
T ss_pred CCCcH
Confidence 99993
No 23
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=44.95 E-value=16 Score=34.17 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCccCCCChhHHHHHHhhhc
Q 029710 84 FGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~ 103 (189)
-|+||| |-.|+.+|+.+.+
T Consensus 241 TgKGyP-D~aTR~fL~~L~~ 259 (384)
T PLN00060 241 TAKGYP-DLATRFILHRLSQ 259 (384)
T ss_pred ecCCCC-CHHHHHHHHHHHH
Confidence 389999 8999999998754
No 24
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=44.09 E-value=11 Score=28.80 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=18.4
Q ss_pred chhhhhHHHhHHHHHHHHhc
Q 029710 51 PVVSGASIVAKVTRDRTLRG 70 (189)
Q Consensus 51 p~VsAASIvAKV~RD~~m~~ 70 (189)
-|||-|||+-|--||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIl~~ 29 (91)
T PF09010_consen 10 EIIAVASILIKFGRDDILEN 29 (91)
T ss_dssp HHHHHHHHHHHTTTHHHHTS
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 47999999999999999987
No 25
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=37.25 E-value=1.3e+02 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHhhhCCCccEEEEecCCc
Q 029710 15 QVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADS 48 (189)
Q Consensus 15 ~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs 48 (189)
-|+.|.-.+-++....|.+.+|+++.....+.+.
T Consensus 51 IIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a 84 (174)
T TIGR00334 51 IILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLA 84 (174)
T ss_pred EEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhc
Confidence 4677876678899999999999987655555554
No 26
>KOG2795 consensus Catalytic subunit of the meiotic double strand break transesterase [Replication, recombination and repair]
Probab=36.01 E-value=24 Score=33.07 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCccCCCChhHHHHHHhhhccccCCCccccccc
Q 029710 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 116 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW 116 (189)
-|+||| |-.|+.+|+.+.+.. -+|-+.=+-|
T Consensus 224 TgKGyP-D~~TR~fLkkL~~~~-~lpv~~LvDa 254 (372)
T KOG2795|consen 224 TGKGYP-DIATRLFLKKLEEKL-KLPVYGLVDA 254 (372)
T ss_pred ecCCCC-cHHHHHHHHHHHHHh-CCCEEEEeec
Confidence 489999 999999999887644 3443333333
No 27
>PRK05473 hypothetical protein; Provisional
Probab=34.89 E-value=29 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.0
Q ss_pred EecCCcccch--hhhhHHHhHHHHHHHHhccc
Q 029710 43 SKKADSLYPV--VSGASIVAKVTRDRTLRGWI 72 (189)
Q Consensus 43 ~~KADs~yp~--VsAASIvAKV~RD~~m~~~~ 72 (189)
..-||..|-. =-|=|+|-|+.||.+|+++.
T Consensus 46 llSGDPaYItsh~nAR~lIrkiERDEilEeLv 77 (86)
T PRK05473 46 LLSGDPAYIPRHNDARNLIRKLERDEILEELV 77 (86)
T ss_pred hccCCCCccCCcccHHHHHHHHhHHHHHHHHH
Confidence 3455655533 24789999999999999863
No 28
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=32.86 E-value=98 Score=27.75 Aligned_cols=53 Identities=15% Similarity=0.324 Sum_probs=35.6
Q ss_pred Ccchhhh----cCCCccc------------EEEEcCCC-ChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhH
Q 029710 1 MHDRSGK----NLHFFIF------------QVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 61 (189)
Q Consensus 1 ~h~~~~l----~~gv~~~------------~V~VDtvG-~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAK 61 (189)
.||..+. ++|+.+. .|+|-+-| +|+.|. +|+++ +++++ |++||.|.-+=-.|+
T Consensus 41 VHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~-~~~~~--g~~vi-----DaTCP~V~k~~~~v~ 110 (281)
T PRK12360 41 IHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYK-DLKDK--GLEII-----DATCPFVKKIQNIVE 110 (281)
T ss_pred cCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHH-HHHHC--CCeEE-----eCCCccchHHHHHHH
Confidence 3898884 4788665 57888888 565555 45442 45544 999999987655553
No 29
>PRK04860 hypothetical protein; Provisional
Probab=24.54 E-value=68 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCCCccCCCChhHHHHHHhhhccccCCCccccccch
Q 029710 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117 (189)
Q Consensus 81 ~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~ 117 (189)
+-.||.|||-|+.=+.||++ +||.|+-.-.|+.
T Consensus 77 ~~~~g~~~~Hg~ewk~lm~~----v~g~~~r~~h~~~ 109 (160)
T PRK04860 77 YQLFGRVAPHGKEWQWMMES----VLGVPARRTHQFE 109 (160)
T ss_pred HHHcCCCCCCCHHHHHHHHH----hcCCCCcccCCCc
Confidence 34578999999988888886 4687654444443
No 30
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=23.50 E-value=31 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.2
Q ss_pred ccccccchhhHHhhccc
Q 029710 110 SLVRFSWGTCTSHFKDI 126 (189)
Q Consensus 110 ~~vR~SW~t~~~~l~~~ 126 (189)
..+..||.||.++++..
T Consensus 35 ~~~~vs~~TV~ri~~~~ 51 (52)
T PF13542_consen 35 RELGVSWSTVRRIFDRY 51 (52)
T ss_pred HHHCCCHHHHHHHHHhh
Confidence 35667899999998754
No 31
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2LA3_A.
Probab=22.79 E-value=1.1e+02 Score=25.25 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=26.1
Q ss_pred CcchhhhcCCCcccEEEEcCCC----ChHHHHHHHhhhCCCccEEEEecC
Q 029710 1 MHDRSGKNLHFFIFQVYLDTVG----DAEKYQAKLSQRFPSIKFVVSKKA 46 (189)
Q Consensus 1 ~h~~~~l~~gv~~~~V~VDtvG----~~~~y~~~L~~~fp~i~~~v~~KA 46 (189)
||++....-=-.++-||-|.-+ ....++..|.+.+|++.+.|...|
T Consensus 27 L~g~~~~~~i~DiDviYfD~~d~s~e~e~~~e~~l~~~~p~~~weVkNQA 76 (163)
T PF06042_consen 27 LHGRPPSTPINDIDVIYFDPSDLSYEAEDAIEARLRALFPGYPWEVKNQA 76 (163)
T ss_dssp GTTS-TT---SEEEEEE--T-TS-HHHHHHHHHHHHHH-TTSEEEEEEST
T ss_pred hcCCCCCCCCCceeEEEeCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeee
Confidence 3444442222246789999843 345678889999999888876554
No 32
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=21.91 E-value=66 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred EecCCcccch--hhhhHHHhHHHHHHHHhcc
Q 029710 43 SKKADSLYPV--VSGASIVAKVTRDRTLRGW 71 (189)
Q Consensus 43 ~~KADs~yp~--VsAASIvAKV~RD~~m~~~ 71 (189)
..-||..|-. =-|=|+|-|+.||.+|+++
T Consensus 43 llSGDPaYItsh~nAR~lIr~~eRDellEeL 73 (79)
T PF06135_consen 43 LLSGDPAYITSHNNARNLIRKIERDELLEEL 73 (79)
T ss_pred eecCCCccccCcccHHHHHHHHhHHHHHHHH
Confidence 3456665543 2478999999999999985
No 33
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=21.42 E-value=1.5e+02 Score=25.45 Aligned_cols=50 Identities=8% Similarity=-0.087 Sum_probs=30.8
Q ss_pred CCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHH
Q 029710 9 LHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASI 58 (189)
Q Consensus 9 ~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASI 58 (189)
.|.++.-++.|+.++|..-.+...+....-++.+.....+.....+++.+
T Consensus 36 ~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~a~~~~ 85 (350)
T cd06366 36 PGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAEFVAEV 85 (350)
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHHHHHHH
Confidence 36778889999988887766666554443345555555444344444443
Done!