Query 029710
Match_columns 189
No_of_seqs 227 out of 1124
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_A Ribonuclease H2 subunit 100.0 1.5E-53 5.1E-58 375.8 11.7 174 4-189 127-301 (301)
2 1io2_A Ribonuclease HII; endon 100.0 1.6E-34 5.3E-39 243.2 8.6 117 2-124 88-206 (213)
3 1eke_A Ribonuclease HII; endon 100.0 4.5E-34 1.6E-38 242.4 6.8 109 10-124 103-220 (230)
4 1i39_A Ribonuclease HII, RNAse 100.0 1.1E-33 3.7E-38 240.2 8.4 113 2-124 106-219 (225)
5 1uax_A Ribonuclease HII, ribon 100.0 1.3E-33 4.4E-38 238.7 8.8 118 2-125 88-207 (220)
6 2etj_A Ribonuclease HII, RNAse 100.0 1.3E-29 4.5E-34 218.5 3.8 111 2-135 102-216 (250)
7 2d0b_A RNAse HIII, ribonucleas 99.9 4.3E-24 1.5E-28 188.2 4.5 119 1-124 179-304 (310)
8 3vn5_A RNAse HIII, ribonucleas 99.7 1.5E-18 5.2E-23 149.9 2.0 95 2-117 160-256 (257)
9 1d3y_A DNA topoisomerase VI A 64.4 2.6 8.8E-05 36.4 1.7 20 83-103 151-170 (301)
10 2q2e_A Type II DNA topoisomera 54.1 5.8 0.0002 35.1 2.2 19 84-103 225-243 (369)
11 2zbk_A Type II DNA topoisomera 48.7 6.7 0.00023 35.1 1.7 19 84-103 232-250 (389)
12 2kih_A Matrix protein 2; S31N, 46.5 6.6 0.00023 24.9 0.9 16 46-61 3-18 (43)
13 1jr5_A 10 kDa anti-sigma facto 41.2 7.2 0.00025 28.6 0.6 20 51-70 10-29 (90)
14 2ljb_A M2 protein, BM2 protein 41.2 10 0.00034 23.2 1.1 16 46-61 3-18 (35)
15 3lbw_A M2 protein; proton chan 33.3 17 0.00057 20.3 1.1 11 51-61 1-11 (23)
16 2la3_A Uncharacterized protein 31.1 43 0.0015 27.2 3.7 45 1-46 51-99 (191)
17 3bkd_A Transmembrane domain of 25.6 26 0.00088 20.0 1.0 11 50-60 3-13 (26)
18 3p0r_A Azoreductase; structura 25.0 1.4E+02 0.0047 23.4 5.7 76 25-102 27-119 (211)
No 1
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=100.00 E-value=1.5e-53 Score=375.76 Aligned_cols=174 Identities=40% Similarity=0.742 Sum_probs=124.6
Q ss_pred hhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcCCC
Q 029710 4 RSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 83 (189)
Q Consensus 4 ~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~~~ 83 (189)
++++++|++++.||||+++.|++|+++|++.+|++++++++|||++||+||||||||||+||++|+.|.|.|.+...+++
T Consensus 127 ~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~~p~~~~~~~~KgDs~~~sVAAASIlAKV~RD~~M~~~~f~e~l~~~~~~ 206 (301)
T 3kio_A 127 QYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSD 206 (301)
T ss_dssp HHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCCCEEEECCCCChHHHHHHHhhcCCCCceEEEeccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHhhCCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred CCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc-ccceeeecCcccccccccccCCcccccccccccCCCCC
Q 029710 84 FGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKR 162 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~-~~~~v~w~~~~~~e~~~~~~~~~~~~~~~s~~~~~~~~ 162 (189)
|||||||||+|++||+++++++||+|++||+||+|++++|+ ++++|.|++|+++++.++. .+|++||.+....
T Consensus 207 ~GsGYPSDp~T~~~L~~~~~~~~G~p~~vR~SW~tvk~~l~~~~~~v~w~~~~~~~~~~~~------~~~~~~f~~~~~~ 280 (301)
T 3kio_A 207 YGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEEDPERP------GKITSYFSQGPQT 280 (301)
T ss_dssp CCSSSTTSHHHHHHHHTTCBTTTBSCTTBCTTSHHHHHHHHHHSCCEECSCC----------------------------
T ss_pred CCCcCCCCHHHHHHHHHcccccCCCCccccCCcHHHHHHHhcCCceeeecccccccccccc------hhHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999998 5999999988643332111 3799998643211
Q ss_pred cchhhhccCccccchhhhcccccccCC
Q 029710 163 RSEEIESSGKGRCKFLEARKLEQLTHF 189 (189)
Q Consensus 163 ~~~~~~~~~~~r~~ff~~r~l~~~~~~ 189 (189)
..+++||+||++|+|++|+++
T Consensus 281 ------~~~~~~~~~f~~~~l~~~~~~ 301 (301)
T 3kio_A 281 ------CRPQAPHRYFQERGLEAASSL 301 (301)
T ss_dssp ---------------------------
T ss_pred ------ccccccchhhHhhcccccccC
Confidence 123679999999999999875
No 2
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=1.6e-34 Score=243.17 Aligned_cols=117 Identities=35% Similarity=0.554 Sum_probs=104.6
Q ss_pred cchhhhcCCCcccEEEEcCCC-ChHHHHHHHhhhCC-CccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhh
Q 029710 2 HDRSGKNLHFFIFQVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 79 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG-~~~~y~~~L~~~fp-~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~ 79 (189)
|++++.++...++.||||+++ ++++|+.+|+..+| .+++++++|||++||+||||||||||+||++|..| ..
T Consensus 88 ~~~ai~~l~~~p~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l------~~ 161 (213)
T 1io2_A 88 FAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKL------KE 161 (213)
T ss_dssp HHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHhccccCCEEEECCCCCCHHHHHHHHhhccCCCCceEEEeCcccccHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 667787888889999999998 88999999998775 68999999999999999999999999999999997 44
Q ss_pred cCCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 80 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 80 ~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
.||+||+|||+||+|++||++.+++.+++|++||+||+|++++++
T Consensus 162 ~y~~~g~GY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~ 206 (213)
T 1io2_A 162 EYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAE 206 (213)
T ss_dssp HHSCCCSSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHHHH
T ss_pred HcCCCCCcCCchHHHHHHHHHHHHHhCCCChhhhCCCHhHHHHHH
Confidence 568999999999999999997665554489999999999999875
No 3
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=4.5e-34 Score=242.42 Aligned_cols=109 Identities=32% Similarity=0.600 Sum_probs=97.3
Q ss_pred CCcccEEEEcCCC-ChHHHHHHHhhhC--------CCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhc
Q 029710 10 HFFIFQVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80 (189)
Q Consensus 10 gv~~~~V~VDtvG-~~~~y~~~L~~~f--------p~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~ 80 (189)
|++++.|+||+++ ++++|+++|+..+ |.+++++++|||++||+||||||||||+||++|..| ...
T Consensus 103 ~~~~~~vliD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l------~~~ 176 (230)
T 1eke_A 103 RDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY------KKI 176 (230)
T ss_dssp CSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred CCCCCEEEECCCCCChHHHHHHHhhhhcccccccCCCCceEEEECcccccHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 6779999999998 8899999987755 457899999999999999999999999999999997 456
Q ss_pred CCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 81 ~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
||+||+|||+||+|++||++..++.+++|++||+||+|++++++
T Consensus 177 yp~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~ 220 (230)
T 1eke_A 177 YGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRILD 220 (230)
T ss_dssp TSCCTTSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHHH
T ss_pred cCCCCCcCCchHHHHHHHHHHHHHhCCCCHHHcCCCHhHHHHHH
Confidence 78999999999999999997665554499999999999999884
No 4
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=100.00 E-value=1.1e-33 Score=240.25 Aligned_cols=113 Identities=31% Similarity=0.456 Sum_probs=100.1
Q ss_pred cchhhhcCCCcccEEEEcCCC-ChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhc
Q 029710 2 HDRSGKNLHFFIFQVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 80 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG-~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~ 80 (189)
|++++.++. ++.|+||+++ ++++|+++|+..+| +++++++|||++||+||||||||||+||++|++| .+.
T Consensus 106 m~~ai~~l~--~~~vlvD~~~~~~~~~~~~l~~~~~-~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l------~~~ 176 (225)
T 1i39_A 106 YAEIILRLK--PEIAYVDSPDVIPERLSRELEEITG-LRVVAEHKADEKYPLVAAASIIAKVEREREIERL------KEK 176 (225)
T ss_dssp HHHHHHHHC--CSEEEEEESSSCCHHHHHHHHHHHC-SEEEEEETGGGTCHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHHHhCC--CCEEEECCCCCChHHHHHHhhhcCC-CceEEEecccccchHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 445555443 5889999998 78999999987665 7899999999999999999999999999999997 446
Q ss_pred CCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 81 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 81 ~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
||+||+|||+||+|++||++++.+ +|+|++||+||+|++++++
T Consensus 177 yp~~gkGY~tD~~t~~hl~~~i~~-~g~~~~hR~Sf~~~~~~l~ 219 (225)
T 1i39_A 177 FGDFGSGYASDPRTREVLKEWIAS-GRIPSCVRMRWKTVSNLRQ 219 (225)
T ss_dssp HCCCCSSSTTSHHHHHHHHHHHHH-TCCCTTBCTTSHHHHHHHC
T ss_pred CCCCCCcCCChHHHHHHHHHhhhh-cCCCHHHcCCCHHHHHHHh
Confidence 789999999999999999987766 8999999999999999887
No 5
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=100.00 E-value=1.3e-33 Score=238.75 Aligned_cols=118 Identities=32% Similarity=0.550 Sum_probs=104.8
Q ss_pred cchhhhcCCCcccEEEEcCCC-ChHHHHHHHhhhCC-CccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhh
Q 029710 2 HDRSGKNLHFFIFQVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 79 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG-~~~~y~~~L~~~fp-~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~ 79 (189)
|++++.++...++.|+||+++ ++++|+++|+..+| .+++++++|||++||+||||||||||+||++|.+| .+
T Consensus 88 m~~ai~~l~~~~~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l------~~ 161 (220)
T 1uax_A 88 FVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKL------KQ 161 (220)
T ss_dssp HHHHHHTCSSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHhcCCCCCEEEECCCCCChHHHHHHhhhccCCCCceEEEeccchhhHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 667788888888999999998 78999999998775 68999999999999999999999999999999997 45
Q ss_pred cCCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhcc
Q 029710 80 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD 125 (189)
Q Consensus 80 ~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~~ 125 (189)
.||+||+|||+||+|++||++...+.+++|++||+||+|+++++++
T Consensus 162 ~yp~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~~ 207 (220)
T 1uax_A 162 KYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEER 207 (220)
T ss_dssp HHCCCTTSCTTCHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHHHH
T ss_pred HcCCCCCcCCchHHHHHHHHHHHHHhCCCChhhcCCChhHHHHHHH
Confidence 6789999999999999999976654444889999999999998864
No 6
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=99.95 E-value=1.3e-29 Score=218.47 Aligned_cols=111 Identities=26% Similarity=0.256 Sum_probs=94.2
Q ss_pred cchhhhcCCCcccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhhcC
Q 029710 2 HDRSGKNLHFFIFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 81 (189)
Q Consensus 2 h~~~~l~~gv~~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~~~ 81 (189)
+++++.+++++++.||||+++.+ | .+++++++|||++||+||||||||||+||++|+.| ...|
T Consensus 102 m~rAi~~L~~~p~~vlVDg~~~~------l-----~~~~~~ivKgD~~~~sVAAASIlAKV~RD~~M~~l------~~~y 164 (250)
T 2etj_A 102 MNRALENLSVKPSFVLVDGKGIE------L-----SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEF------HRMY 164 (250)
T ss_dssp HHHHHHHSSSCCSEEEEESSSCC------C-----SSCEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHH------HHHC
T ss_pred HHHHHHhcCCCCCEEEECCCCCC------C-----CCceEEEecccccchhHHHHHHHHHHHHHHHHHHH------HHHC
Confidence 46788889999999999998764 1 25678889999999999999999999999999997 4578
Q ss_pred CCCC----ccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhcccceeeecCcc
Q 029710 82 RNFG----SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 135 (189)
Q Consensus 82 ~~~G----sGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~~~~~v~w~~~~ 135 (189)
|.|| +|||+ +.+++||+ .||++++||+||+|++++++..+.+.|.+++
T Consensus 165 p~Ygf~~~kGY~T-~~h~~al~-----~~G~~~~HR~Sf~~v~~~l~~~~~~~w~~~~ 216 (250)
T 2etj_A 165 PQFSFHKHKGYAT-KEHLNEIR-----KNGVLPIHRLSFEPVLELLTDDLLREFFEKG 216 (250)
T ss_dssp TTSCHHHHTTCCC-HHHHHHHH-----HHCCCTTBCTTSHHHHTTCCHHHHHHHHHTT
T ss_pred cccCCcCCCcCCc-HHHHHHHH-----HcCcCCeEECCcHHHHHHHhhccccccCCCc
Confidence 9998 99995 44555544 5799999999999999999755889997765
No 7
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=99.89 E-value=4.3e-24 Score=188.23 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred Ccchhh----hcC-CCcccEEEEcCCCChHHHHHHHhh--hCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccch
Q 029710 1 MHDRSG----KNL-HFFIFQVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 73 (189)
Q Consensus 1 ~h~~~~----l~~-gv~~~~V~VDtvG~~~~y~~~L~~--~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~ 73 (189)
||++++ ..+ |++++.|+||+++.++.|+++|++ .++.+++++++|||++||+|||||||| ||++|+.|+.
T Consensus 179 ~~~~ai~~~i~~L~~~~p~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~~~KgD~~~~~VAAASIlA---RD~~m~~l~~ 255 (310)
T 2d0b_A 179 LHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIA---RYVFLEEMEQ 255 (310)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCEEEECCCCChHHHHHHHhhccccCCCceEEEeccccccHHHHHHHHHH---HHHHHHHHHH
Confidence 466665 333 499999999999999999999975 456789999999999999999999999 9999999854
Q ss_pred hhhhhhcCCCCCccCCCChhHHHHHHhhhccccCCCccccccchhhHHhhc
Q 029710 74 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFK 124 (189)
Q Consensus 74 ~e~~~~~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~t~~~~l~ 124 (189)
...........|+|||+|+.|++||+++-.. ++|.++|+||+|++++++
T Consensus 256 ~~p~Yg~~~~kGygt~~h~~a~~~L~~~G~~--~l~~~~R~sf~t~~~~~~ 304 (310)
T 2d0b_A 256 LSRAVGLLLPKGAGAIVDEAAARIIRARGEE--MLETCAKLHFANTKKALA 304 (310)
T ss_dssp HHHHHTSCCCSSSSHHHHHHHHHHHHHHCGG--GHHHHBCTTSTHHHHHHH
T ss_pred hCcccCCCCCcCCCCHHHHHHHHHHHHhCCC--ccchhheecCHhHHHHHH
Confidence 3221111124567778888888888877532 566788899999999886
No 8
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=99.71 E-value=1.5e-18 Score=149.85 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=70.8
Q ss_pred cchhhhcCCCc--ccEEEEcCCCChHHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHHHHHHHhccchhhhhhh
Q 029710 2 HDRSGKNLHFF--IFQVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 79 (189)
Q Consensus 2 h~~~~l~~gv~--~~~V~VDtvG~~~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~RD~~m~~~~~~e~~~~ 79 (189)
|++++..+... ++.|+||+++.+. .| .+++++++|||+ ||+|||||||||+.||+.|..+ ...
T Consensus 160 m~~Ai~~L~~~~~~~~vlvD~~~~~~----~l-----~~~~~~~~KgD~-~~sVAAASIlARd~~m~~l~~~-----~p~ 224 (257)
T 3vn5_A 160 YKLLIERVKEECGVSEVVVDKYQPSN----PF-----GEDVIFETEAER-NLAVAVASIFARYKFLQSLKEV-----ERE 224 (257)
T ss_dssp HHHHHHHHHHHHTCSCEEECCCSSSC----CS-----CTTEEECBTTBC-CHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHhhccCCCCEEEECCCCCcc----cC-----CCCeEEEEccch-hHHHHHHHHHHHHHHHHHHHHh-----Ccc
Confidence 66777555444 5789999987532 12 257899999999 9999999999944444444432 122
Q ss_pred cCCCCCccCCCChhHHHHHHhhhccccCCCccccccch
Q 029710 80 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWG 117 (189)
Q Consensus 80 ~~~~~GsGYPsDp~Tk~~L~~~~~~~~G~p~~vR~SW~ 117 (189)
++-+.++||| |+.|++++. .+|++++||.||.
T Consensus 225 Ygf~~~kGYg----T~~H~~Al~--~~G~~~~~rl~f~ 256 (257)
T 3vn5_A 225 LGIKIPKGTS----KEVKELAKS--LKNPERFIKLNFN 256 (257)
T ss_dssp HCSCCCCSCC----HHHHHHHHT--CSSGGGTBCGGGC
T ss_pred CCCcCCCCCC----cHHHHHHHH--HHCCCHHHHhccC
Confidence 2335669999 999999998 8999999999994
No 9
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=64.37 E-value=2.6 Score=36.38 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.2
Q ss_pred CCCccCCCChhHHHHHHhhhc
Q 029710 83 NFGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 83 ~~GsGYPsDp~Tk~~L~~~~~ 103 (189)
-+|+||| |..|+.||+.+.+
T Consensus 151 It~kGyP-d~aTR~fl~~L~~ 170 (301)
T 1d3y_A 151 VSLKGVP-ARATRRFIKRLHE 170 (301)
T ss_dssp EECCSSC-CHHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHH
Confidence 3689999 9999999998754
No 10
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=54.07 E-value=5.8 Score=35.05 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.4
Q ss_pred CCccCCCChhHHHHHHhhhc
Q 029710 84 FGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~ 103 (189)
+|+||| |..|+.||+.+.+
T Consensus 225 t~kG~P-d~atR~~L~~L~~ 243 (369)
T 2q2e_A 225 HLKGQP-ARSTRRIIKRMNE 243 (369)
T ss_dssp ECCSSC-CHHHHHHHHHHTT
T ss_pred ECCCCC-CHHHHHHHHHHHH
Confidence 689999 8899999998754
No 11
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=48.68 E-value=6.7 Score=35.11 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.8
Q ss_pred CCccCCCChhHHHHHHhhhc
Q 029710 84 FGSGYPGDPETKAWLTDHKH 103 (189)
Q Consensus 84 ~GsGYPsDp~Tk~~L~~~~~ 103 (189)
+|+||| |+.|+.||+.+.+
T Consensus 232 t~kG~P-d~aTR~fL~~L~~ 250 (389)
T 2zbk_A 232 TSAGQP-DRATRRFVRRLNE 250 (389)
T ss_dssp ECCSSC-CTTHHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHHHH
Confidence 689999 8999999998764
No 12
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=46.50 E-value=6.6 Score=24.88 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=11.6
Q ss_pred CCcccchhhhhHHHhH
Q 029710 46 ADSLYPVVSGASIVAK 61 (189)
Q Consensus 46 ADs~yp~VsAASIvAK 61 (189)
.||.-|.|.||||+.=
T Consensus 3 ~dssdplv~aa~iiGI 18 (43)
T 2kih_A 3 NDSSDPLVVAANIIGI 18 (43)
T ss_dssp ---CCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHH
Confidence 3788899999999974
No 13
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=41.22 E-value=7.2 Score=28.61 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.3
Q ss_pred chhhhhHHHhHHHHHHHHhc
Q 029710 51 PVVSGASIVAKVTRDRTLRG 70 (189)
Q Consensus 51 p~VsAASIvAKV~RD~~m~~ 70 (189)
-||+-|||+-|--||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIle~ 29 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVEN 29 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 47899999999999999987
No 14
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=41.18 E-value=10 Score=23.19 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=11.5
Q ss_pred CCcccchhhhhHHHhH
Q 029710 46 ADSLYPVVSGASIVAK 61 (189)
Q Consensus 46 ADs~yp~VsAASIvAK 61 (189)
.||.-|.|.||+|+-=
T Consensus 3 ~dSsDplviaA~Iigi 18 (35)
T 2ljb_A 3 NDSSDPLVVAASIIGI 18 (35)
T ss_dssp ---CCTHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHH
Confidence 3788899999999873
No 15
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=33.27 E-value=17 Score=20.25 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=8.9
Q ss_pred chhhhhHHHhH
Q 029710 51 PVVSGASIVAK 61 (189)
Q Consensus 51 p~VsAASIvAK 61 (189)
|.|.||||+.=
T Consensus 1 plv~aa~iigI 11 (23)
T 3lbw_A 1 PLVVAASIIAI 11 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred CeehhHHHHHH
Confidence 67899999873
No 16
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=31.14 E-value=43 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=30.2
Q ss_pred CcchhhhcCCCcccEEEEcCCC----ChHHHHHHHhhhCCCccEEEEecC
Q 029710 1 MHDRSGKNLHFFIFQVYLDTVG----DAEKYQAKLSQRFPSIKFVVSKKA 46 (189)
Q Consensus 1 ~h~~~~l~~gv~~~~V~VDtvG----~~~~y~~~L~~~fp~i~~~v~~KA 46 (189)
||++....-=-.++-||-|. + ....++.+|++.||++.+.|...|
T Consensus 51 L~g~~~~~~i~DiDviYFD~-d~s~e~e~~~e~~L~~~~p~~~weVkNQA 99 (191)
T 2la3_A 51 LSDKSPFDHETDIDVIFFDP-DFSYEETLLLEKKLREDFPQYQWELKNQV 99 (191)
T ss_dssp GTTSCTTCCCSEEEEEECCT-TSCHHHHHHHHHHHHHHCTTSEEEEEEST
T ss_pred hcCCCCCCCCCceeEEEECC-CCCHHHHHHHHHHHHHhCCCCCEEEEece
Confidence 45554432223468899997 4 235678889999999887776554
No 17
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=25.56 E-value=26 Score=19.98 Aligned_cols=11 Identities=45% Similarity=0.613 Sum_probs=9.5
Q ss_pred cchhhhhHHHh
Q 029710 50 YPVVSGASIVA 60 (189)
Q Consensus 50 yp~VsAASIvA 60 (189)
-|.|.||||+-
T Consensus 3 Dplv~aa~iiG 13 (26)
T 3bkd_A 3 DPLVVAASIMG 13 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred CcchhHHHHHH
Confidence 48899999986
No 18
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=25.05 E-value=1.4e+02 Score=23.36 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHHHHhhhCCCccEEEEecCCcccchhhhhHHHhHHH--------------H---HHHHhccchhhhhhhcCCCCCcc
Q 029710 25 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVT--------------R---DRTLRGWIFEETAENMHRNFGSG 87 (189)
Q Consensus 25 ~~y~~~L~~~fp~i~~~v~~KADs~yp~VsAASIvAKV~--------------R---D~~m~~~~~~e~~~~~~~~~GsG 87 (189)
+.+.+.|++..|+.++++..=+|..+|..++.-+-+.-. . +++++++.....+--..|.|-.|
T Consensus 27 ~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~iv~~~P~y~~~ 106 (211)
T 3p0r_A 27 EAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLT 106 (211)
T ss_dssp HHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTB
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEcChhccc
Confidence 344555666678888888888887779988765543211 0 12222221111111135788899
Q ss_pred CCCChhHHHHHHhhh
Q 029710 88 YPGDPETKAWLTDHK 102 (189)
Q Consensus 88 YPsDp~Tk~~L~~~~ 102 (189)
+| +..|.|+....
T Consensus 107 ~p--~~lK~~iD~~~ 119 (211)
T 3p0r_A 107 IP--AVLHTYIDYLN 119 (211)
T ss_dssp CC--HHHHHHHHHHC
T ss_pred CC--HHHHHHHHHHh
Confidence 99 45677777665
Done!