Query 029712
Match_columns 189
No_of_seqs 162 out of 494
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 99.8 2.6E-19 5.5E-24 158.5 5.3 83 4-88 210-299 (302)
2 KOG3288 OTU-like cysteine prot 99.5 4.9E-15 1.1E-19 130.0 3.0 103 18-138 165-273 (307)
3 PF02338 OTU: OTU-like cystein 99.2 2.4E-11 5.1E-16 91.6 3.8 59 23-81 53-121 (121)
4 COG5539 Predicted cysteine pro 98.2 1.5E-06 3.3E-11 77.8 4.0 64 18-85 236-305 (306)
5 KOG2605 OTU (ovarian tumor)-li 97.8 1.8E-05 3.9E-10 73.0 4.1 76 12-87 262-344 (371)
6 PF10275 Peptidase_C65: Peptid 97.6 0.00015 3.3E-09 61.9 6.4 69 16-85 167-243 (244)
7 COG5539 Predicted cysteine pro 97.4 2.1E-05 4.6E-10 70.6 -1.7 66 17-85 163-230 (306)
8 KOG3991 Uncharacterized conser 93.7 0.14 2.9E-06 45.3 5.3 68 17-85 183-254 (256)
9 KOG2605 OTU (ovarian tumor)-li 47.6 4.2 9.1E-05 38.0 -1.1 41 121-161 298-338 (371)
10 KOG1252 Cystathionine beta-syn 38.4 68 0.0015 30.1 5.2 106 15-127 182-298 (362)
11 PF11159 DUF2939: Protein of u 32.0 1.1E+02 0.0024 22.4 4.6 43 104-154 13-55 (95)
12 PF09957 DUF2191: Uncharacteri 22.3 2.4E+02 0.0052 18.6 5.0 38 119-157 8-45 (47)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-19 Score=158.53 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=68.2
Q ss_pred eeeccccCCCCcc-cHHHHHhhcCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcC----
Q 029712 4 FSFSVCNCDSHSF-VVKRFVLTSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH---- 77 (189)
Q Consensus 4 ~~~~~~n~Df~~~-~fdeYc~~i~d~-~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~---- 77 (189)
|.+..++-|-.++ -|++||+.|+++ +|||+|||+|||++|.+||+||+.++++. +++++|.+ .+||+|+||+
T Consensus 210 f~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~-~~geey~k-d~pL~lvY~rH~y~ 287 (302)
T KOG2606|consen 210 FLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPIL-EYGEEYGK-DKPLILVYHRHAYG 287 (302)
T ss_pred HhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCce-eechhhCC-CCCeeeehHHhHHH
Confidence 4444555544443 399999988875 99999999999999999999999998655 66688876 6899999999
Q ss_pred -CCCCccccCCC
Q 029712 78 -GNHYNSLVDPR 88 (189)
Q Consensus 78 -G~HYNSV~~p~ 88 (189)
|+||||+.+++
T Consensus 288 LGeHYNS~~~~~ 299 (302)
T KOG2606|consen 288 LGEHYNSVTPLK 299 (302)
T ss_pred HHhhhccccccc
Confidence 99999998654
No 2
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.9e-15 Score=130.04 Aligned_cols=103 Identities=23% Similarity=0.403 Sum_probs=83.2
Q ss_pred HHHHHhhcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccCCCCCCcccCC
Q 029712 18 VKRFVLTSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGL 96 (189)
Q Consensus 18 fdeYc~~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~~~~ig~gl 96 (189)
=.+||.||+. ..|||.|||.+||..|++.|+|++.++-+|+.|+++ ......+.|.|. |+|||++.
T Consensus 165 n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged-~~~~~rv~llyd-GIHYD~l~----------- 231 (307)
T KOG3288|consen 165 NKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGED-KNFDNRVLLLYD-GIHYDPLA----------- 231 (307)
T ss_pred cHHHHHHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCCC-CCCCceEEEEec-ccccChhh-----------
Confidence 3789999987 599999999999999999999999999999999654 335667888886 99999986
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhHHHHHHH-----HHhccccccchH
Q 029712 97 GFSCLRGTNVDKDQVKAAIKAQQDQQIDNA-----LLAEGRFYSDLE 138 (189)
Q Consensus 97 g~~~~~p~~~dk~~~~~a~~~se~~~ie~a-----~l~dk~~~tD~e 138 (189)
+.-+.|.++|.. .|..+++.++.+| .++.+++|||+-
T Consensus 232 -m~~~~~~~~~~t----ifp~~dd~v~~~alqLa~~~k~~r~ytdt~ 273 (307)
T KOG3288|consen 232 -MNEFKPTDVDNT----IFPVSDDTVLTQALQLASELKRTRYYTDTA 273 (307)
T ss_pred -hccCCccCCccc----ccccccchHHHHHHHHHHHHHhcceecccc
Confidence 122456777766 6777777666665 578899999964
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.16 E-value=2.4e-11 Score=91.65 Aligned_cols=59 Identities=41% Similarity=0.668 Sum_probs=46.0
Q ss_pred hhcCCCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEe---cC--CCCCCCCcEEEEEcC-----CCCC
Q 029712 23 LTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIF---HG--SYNTDNPPIRLSYHH-----GNHY 81 (189)
Q Consensus 23 ~~i~d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if---~e--~~~~~~~~I~LsYh~-----G~HY 81 (189)
+|.++++|||++||+|||++|+|+|.||+........+ .+ ......++|+|+|+. |+||
T Consensus 53 ~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 53 KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 35677899999999999999999999998865442222 11 123467899999999 9998
No 4
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.5e-06 Score=77.79 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHhhcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcC-----CCCCcccc
Q 029712 18 VKRFVLTSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH-----GNHYNSLV 85 (189)
Q Consensus 18 fdeYc~~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~-----G~HYNSV~ 85 (189)
|++||+.++. ..||+.+|+|+||..+++|+.++...++.+ .++.-. .+....+.|+. | |||+..
T Consensus 236 ~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~i-k~n~c~--~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 236 WDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI-KCNICG--TGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred HHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceE-Eeeccc--cccchhhHHHHHHHhhc-CccccC
Confidence 8999997776 599999999999999999999999877655 333221 23456677766 7 999975
No 5
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.8e-05 Score=72.96 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCCccc---HHHHHh-hcCCCCCCCHHHHHHHH---HhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccc
Q 029712 12 DSHSFV---VKRFVL-TSWMQVYGNNVEIQALC---EMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84 (189)
Q Consensus 12 Df~~~~---fdeYc~-~i~d~~WGG~IELqALS---e~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV 84 (189)
+|.+|+ |-.|.+ |.+++.||+|+|+||+| +....|+.+.+.......-..+...+....+++.|+.-.|||.+
T Consensus 262 ~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~~~~ 341 (371)
T KOG2605|consen 262 FYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHYNTA 341 (371)
T ss_pred ccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccchhhhhhc
Confidence 355555 788998 56689999999999999 67788888888876543333233333445577778888999999
Q ss_pred cCC
Q 029712 85 VDP 87 (189)
Q Consensus 85 ~~p 87 (189)
+..
T Consensus 342 ~~~ 344 (371)
T KOG2605|consen 342 RHS 344 (371)
T ss_pred ccc
Confidence 855
No 6
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=97.60 E-value=0.00015 Score=61.89 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=46.0
Q ss_pred ccHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCC----ceE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712 16 FVVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTE----PIN--IFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (189)
Q Consensus 16 ~~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~----~i~--if~e~~~~~~~~I~LsYh~G~HYNSV~ 85 (189)
..+++||+ .+.. +.=.+||.|.|||++++++|.|+-.+.. .++ .+.+......+.|+|.|--| |||-++
T Consensus 167 ~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpg-HYdIly 243 (244)
T PF10275_consen 167 LTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPG-HYDILY 243 (244)
T ss_dssp S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred CCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCC-cccccc
Confidence 45889998 5666 5888999999999999999999988743 122 23222234678999999855 999775
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=2.1e-05 Score=70.56 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=54.1
Q ss_pred cHHHHHhhcCC-CCCC-CHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712 17 VVKRFVLTSWM-QVYG-NNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (189)
Q Consensus 17 ~fdeYc~~i~d-~~WG-G~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~ 85 (189)
.--.||.|+.. ..|| |++|+-+||..+++.|+|..+....+..+++. +....+++.|. |+|||...
T Consensus 163 ~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~--~~~q~~~i~f~-g~hfD~~t 230 (306)
T COG5539 163 DVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH--PYVQRISILFT-GIHFDEET 230 (306)
T ss_pred chHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCC--hhhhhhhhhhc-ccccchhh
Confidence 45779999887 5999 99999999999999999999987666666432 23456888886 99999986
No 8
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.14 Score=45.34 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred cHHHHHh-hcCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceEEe-cCCCC-CCCCcEEEEEcCCCCCcccc
Q 029712 17 VVKRFVL-TSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIF-HGSYN-TDNPPIRLSYHHGNHYNSLV 85 (189)
Q Consensus 17 ~fdeYc~-~i~d~-~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if-~e~~~-~~~~~I~LsYh~G~HYNSV~ 85 (189)
.++.||. .+..- .=-|||+|-|||+++++.|.|--++...-... +-.+. ...|.|.|.|- -.|||-++
T Consensus 183 tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYr-pGHYdilY 254 (256)
T KOG3991|consen 183 TVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYR-PGHYDILY 254 (256)
T ss_pred cHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEec-CCcccccc
Confidence 3789999 46653 66899999999999999999987754322122 11221 25678999986 78999887
No 9
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=47.55 E-value=4.2 Score=37.95 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=35.8
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHhccch
Q 029712 121 QQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN 161 (189)
Q Consensus 121 ~~ie~a~l~dk~~~tD~e~t~~~ie~~v~~~s~~~~l~~~~ 161 (189)
..+++.|+.++...|||..|...|+++++++.+..|+....
T Consensus 298 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~ 338 (371)
T KOG2605|consen 298 EEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHY 338 (371)
T ss_pred hhccccceeecccccceeccCcccccchhhhhhcccchhhh
Confidence 44555688899999999999999999999999999998755
No 10
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=38.41 E-value=68 Score=30.14 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=57.9
Q ss_pred cccHHHHHhhcCC--C--CCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCC-CCCCcEEEEEcCCCCCccccCCCC
Q 029712 15 SFVVKRFVLTSWM--Q--VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYN-TDNPPIRLSYHHGNHYNSLVDPRR 89 (189)
Q Consensus 15 ~~~fdeYc~~i~d--~--~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~-~~~~~I~LsYh~G~HYNSV~~p~~ 89 (189)
.|.+|+|++.-.. + +=|-+|=-|- .=++.|.|+-..+.--...-+.|. +.++++.+.= -.-+|.++.++..
T Consensus 182 a~~l~Qf~np~Np~~hy~ttg~EI~~q~---~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~-vdp~~S~~~~~~~ 257 (362)
T KOG1252|consen 182 AYILDQFHNPGNPLAHYETTGPEIWRQL---DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVG-VDPQESIVLSGGK 257 (362)
T ss_pred hHHHHHhcCCCCcccccccccHHHHHHh---cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEE-eCCCcceeccCCC
Confidence 3567888874322 1 3343332232 556777777775421111111111 1234444432 2445555554433
Q ss_pred CCc------ccCCCCCCCCCCchhHHHHHHHHHHhhHHHHHHHH
Q 029712 90 MTV------GAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNAL 127 (189)
Q Consensus 90 ~~i------g~glg~~~~~p~~~dk~~~~~a~~~se~~~ie~a~ 127 (189)
+.. |.|-| |.|...|.+.|...++...++.++-||
T Consensus 258 ~g~~~~~I~GIGyg---~~p~~ld~~~vd~~~~~~~d~A~~~Ar 298 (362)
T KOG1252|consen 258 PGPTFHKIQGIGYG---FIPTTLDTKLVDEVLKVSSDEAIEMAR 298 (362)
T ss_pred CCCCccceeccccC---cCccccchHHHHHHHHhCCHHHHHHHH
Confidence 221 33322 899999999999999999888888774
No 11
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=31.96 E-value=1.1e+02 Score=22.35 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q 029712 104 TNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRA 154 (189)
Q Consensus 104 ~~~dk~~~~~a~~~se~~~ie~a~l~dk~~~tD~e~t~~~ie~~v~~~s~~ 154 (189)
|.....++++|++..|...+++-+ ||.+-.+.+.+|+...-..
T Consensus 13 Py~al~~i~~Ai~~~D~~~l~~~V--------D~~avr~slk~ql~~~~~~ 55 (95)
T PF11159_consen 13 PYYALYQIRQAIQAHDAAALARYV--------DFPAVRASLKDQLNAELVS 55 (95)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHc--------CHHHHHHHHHHHHHHHHHh
Confidence 445667899999999999888766 9999999998888765444
No 12
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.26 E-value=2.4e+02 Score=18.57 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHh
Q 029712 119 QDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 157 (189)
Q Consensus 119 e~~~ie~a~l~dk~~~tD~e~t~~~ie~~v~~~s~~~~l 157 (189)
+++.|++||---+ .-|--++-++++++.|.++...+.+
T Consensus 8 Dd~Ll~eA~~l~g-~~tk~~~V~~ALr~~i~r~~~~~l~ 45 (47)
T PF09957_consen 8 DDELLAEAMRLTG-TKTKKEAVNEALRELIRRRKRRELL 45 (47)
T ss_pred CHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666653333 3355567788888888888776543
Done!